pyrox.dev
deeptools: 3.5.5 -> 3.5.6 (#381289)
+16
-19
pkgs/by-name/de/deeptools/package.nix
+16
-19
pkgs/by-name/de/deeptools/package.nix
···
1
{
2
lib,
3
-
python3,
4
fetchFromGitHub,
5
}:
6
7
-
python3.pkgs.buildPythonApplication rec {
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pname = "deeptools";
9
-
version = "3.5.5";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "deeptools";
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repo = "deepTools";
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tag = version;
16
-
hash = "sha256-2kSlL7Y5f/FjVtStnmz+GlTw2oymrtxOCaXlqgbQ7FU=";
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};
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19
-
nativeBuildInputs = with python3.pkgs; [
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setuptools
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];
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23
-
propagatedBuildInputs = with python3.pkgs; [
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numpy
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numpydoc
26
-
scipy
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py2bit
28
-
pybigwig
29
-
pysam
30
-
matplotlib
31
plotly
32
deeptoolsintervals
33
-
importlib-metadata
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];
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36
-
nativeCheckInputs = with python3.pkgs; [
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pytestCheckHook
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];
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-
preCheck = ''
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-
export PATH="$out/bin:$PATH"
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-
'';
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-
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disabledTestPaths = [
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# tests trip on `len(sys.argv) == 1`
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"deeptools/test/test_bigwigAverage.py"
···
49
"deeptools/test/test_multiBamSummary.py"
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];
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52
-
meta = with lib; {
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homepage = "https://deeptools.readthedocs.io/en/develop";
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description = "Tools for exploring deep DNA sequencing data";
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longDescription = ''
···
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publication-ready visualizations to identify enrichments and for functional
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annotations of the genome.
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'';
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-
license = with licenses; [
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mit
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bsd3
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];
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-
maintainers = with maintainers; [ scalavision ];
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};
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}
···
1
{
2
lib,
3
+
python3Packages,
4
fetchFromGitHub,
5
+
addBinToPathHook,
6
}:
7
8
+
python3Packages.buildPythonApplication rec {
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pname = "deeptools";
10
+
version = "3.5.6";
11
pyproject = true;
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13
src = fetchFromGitHub {
14
owner = "deeptools";
15
repo = "deepTools";
16
tag = version;
17
+
hash = "sha256-dxXlOvOjF4KSc5YO+1A5hlp95sfeyPSbmp93tihm7Vo=";
18
};
19
20
+
build-system = with python3Packages; [
21
setuptools
22
];
23
24
+
dependencies = with python3Packages; [
25
numpy
26
+
scipy
27
+
matplotlib
28
+
pysam
29
numpydoc
30
+
pybigwig
31
py2bit
32
plotly
33
deeptoolsintervals
34
];
35
36
+
nativeCheckInputs = with python3Packages; [
37
pytestCheckHook
38
+
addBinToPathHook
39
];
40
41
disabledTestPaths = [
42
# tests trip on `len(sys.argv) == 1`
43
"deeptools/test/test_bigwigAverage.py"
···
46
"deeptools/test/test_multiBamSummary.py"
47
];
48
49
+
meta = {
50
homepage = "https://deeptools.readthedocs.io/en/develop";
51
description = "Tools for exploring deep DNA sequencing data";
52
longDescription = ''
···
57
publication-ready visualizations to identify enrichments and for functional
58
annotations of the genome.
59
'';
60
+
license = with lib.licenses; [
61
mit
62
bsd3
63
];
64
+
maintainers = with lib.maintainers; [ scalavision ];
65
};
66
}