pyrox.dev
deeptools: 3.5.5 -> 3.5.6 (#381289)
+16
-19
pkgs/by-name/de/deeptools/package.nix
+16
-19
pkgs/by-name/de/deeptools/package.nix
···
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{
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lib,
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python3,
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python3Packages,
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fetchFromGitHub,
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addBinToPathHook,
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}:
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python3.pkgs.buildPythonApplication rec {
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python3Packages.buildPythonApplication rec {
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pname = "deeptools";
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version = "3.5.5";
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version = "3.5.6";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "deeptools";
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repo = "deepTools";
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tag = version;
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hash = "sha256-2kSlL7Y5f/FjVtStnmz+GlTw2oymrtxOCaXlqgbQ7FU=";
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hash = "sha256-dxXlOvOjF4KSc5YO+1A5hlp95sfeyPSbmp93tihm7Vo=";
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};
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nativeBuildInputs = with python3.pkgs; [
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build-system = with python3Packages; [
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setuptools
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];
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propagatedBuildInputs = with python3.pkgs; [
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dependencies = with python3Packages; [
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numpy
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scipy
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matplotlib
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pysam
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numpydoc
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scipy
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+
pybigwig
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py2bit
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pybigwig
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pysam
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matplotlib
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plotly
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deeptoolsintervals
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importlib-metadata
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];
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nativeCheckInputs = with python3.pkgs; [
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nativeCheckInputs = with python3Packages; [
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pytestCheckHook
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addBinToPathHook
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];
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preCheck = ''
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export PATH="$out/bin:$PATH"
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'';
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disabledTestPaths = [
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# tests trip on `len(sys.argv) == 1`
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"deeptools/test/test_bigwigAverage.py"
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"deeptools/test/test_multiBamSummary.py"
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];
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meta = with lib; {
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meta = {
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homepage = "https://deeptools.readthedocs.io/en/develop";
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description = "Tools for exploring deep DNA sequencing data";
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longDescription = ''
···
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publication-ready visualizations to identify enrichments and for functional
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annotations of the genome.
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'';
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license = with licenses; [
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license = with lib.licenses; [
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mit
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bsd3
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];
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maintainers = with maintainers; [ scalavision ];
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maintainers = with lib.maintainers; [ scalavision ];
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};
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}