pyrox.dev
petsc: removed default unfree dependencies
authored by Alexander Kiselyov and committed by Emery Hemingway dc622dce 771c5644
+36
-43
pkgs/by-name/pe/petsc/package.nix
+36
-43
pkgs/by-name/pe/petsc/package.nix
···
15
hdf5,
16
metis,
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parmetis,
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pkg-config,
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p4est,
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zlib, # propagated by p4est but required by petsc
···
36
};
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inherit mpiSupport;
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-
withp4est = petsc-withp4est;
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strictDeps = true;
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nativeBuildInputs = [
···
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buildInputs = [
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blas
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lapack
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-
] ++ lib.optional hdf5-support hdf5 ++ lib.optional withp4est p4est;
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prePatch = lib.optionalString stdenv.isDarwin ''
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substituteInPlace config/install.py \
···
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# These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
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patches = [ ./filter_mpi_warnings.patch ];
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preConfigure = ''
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patchShebangs ./lib/petsc/bin
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-
configureFlagsArray=(
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-
$configureFlagsArray
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-
${
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-
if !mpiSupport then
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-
''
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"--with-mpi=0"
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''
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-
else
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''
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"--CC=mpicc"
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"--with-cxx=mpicxx"
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"--with-fc=mpif90"
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"--with-mpi=1"
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-
"--with-metis=1"
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"--with-metis-dir=${metis}"
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"--with-parmetis=1"
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"--with-parmetis-dir=${parmetis}"
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-
''
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-
}
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${lib.optionalString withp4est ''
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"--with-p4est=1"
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"--with-zlib-include=${zlib.dev}/include"
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"--with-zlib-lib=-L${zlib}/lib -lz"
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''}
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${lib.optionalString hdf5-support ''
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"--with-hdf5=1"
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"--with-hdf5-fortran-bindings=1"
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"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
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-
"--with-hdf5-include=${hdf5.dev}/include"
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''}
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-
"--with-blas=1"
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"--with-lapack=1"
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-
"--with-scalar-type=${petsc-scalar-type}"
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-
"--with-precision=${petsc-precision}"
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${lib.optionalString petsc-optimized ''
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"--with-debugging=0"
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-
COPTFLAGS='-O3'
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FOPTFLAGS='-O3'
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CXXOPTFLAGS='-O3'
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CXXFLAGS='-O3'
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-
''}
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)
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'';
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···
15
hdf5,
16
metis,
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parmetis,
18
+
withParmetis ? false,
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pkg-config,
20
p4est,
21
zlib, # propagated by p4est but required by petsc
···
37
};
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inherit mpiSupport;
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strictDeps = true;
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nativeBuildInputs = [
···
47
buildInputs = [
48
blas
49
lapack
50
+
] ++ lib.optional hdf5-support hdf5 ++ lib.optional petsc-withp4est p4est ++ lib.optionals withParmetis [ metis parmetis ];
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prePatch = lib.optionalString stdenv.isDarwin ''
53
substituteInPlace config/install.py \
···
60
# These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
61
patches = [ ./filter_mpi_warnings.patch ];
62
63
+
configureFlags = [
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+
"--with-blas=1"
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+
"--with-lapack=1"
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+
"--with-scalar-type=${petsc-scalar-type}"
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+
"--with-precision=${petsc-precision}"
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+
"--with-mpi=${if mpiSupport then "1" else "0"}"
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+
] ++ lib.optionals mpiSupport [
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+
"--CC=mpicc"
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+
"--with-cxx=mpicxx"
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+
"--with-fc=mpif90"
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+
] ++ lib.optionals (mpiSupport && withParmetis) [
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+
"--with-metis=1"
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+
"--with-metis-dir=${metis}"
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+
"--with-parmetis=1"
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+
"--with-parmetis-dir=${parmetis}"
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+
] ++ lib.optionals petsc-optimized [
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+
"--with-debugging=0"
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+
"COPTFLAGS=-O3"
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+
"FOPTFLAGS=-O3"
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+
"CXXOPTFLAGS=-O3"
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+
"CXXFLAGS=-O3"
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+
];
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preConfigure = ''
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patchShebangs ./lib/petsc/bin
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+
'' + lib.optionalString petsc-withp4est ''
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+
configureFlagsArray+=(
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+
"--with-p4est=1"
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+
"--with-zlib-include=${zlib.dev}/include"
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+
"--with-zlib-lib=-L${zlib}/lib -lz"
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+
)
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+
'' + lib.optionalString hdf5-support ''
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+
configureFlagsArray+=(
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+
"--with-hdf5=1"
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+
"--with-hdf5-fortran-bindings=1"
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+
"--with-hdf5-include=${hdf5.dev}/include"
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+
"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
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)
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'';
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