pyrox.dev
petsc: removed default unfree dependencies
authored by Alexander Kiselyov and committed by Emery Hemingway dc622dce 771c5644
+36
-43
pkgs/by-name/pe/petsc/package.nix
+36
-43
pkgs/by-name/pe/petsc/package.nix
···
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hdf5,
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metis,
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parmetis,
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withParmetis ? false,
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pkg-config,
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p4est,
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zlib, # propagated by p4est but required by petsc
···
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};
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inherit mpiSupport;
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-
withp4est = petsc-withp4est;
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strictDeps = true;
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nativeBuildInputs = [
···
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buildInputs = [
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blas
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lapack
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] ++ lib.optional hdf5-support hdf5 ++ lib.optional withp4est p4est;
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] ++ lib.optional hdf5-support hdf5 ++ lib.optional petsc-withp4est p4est ++ lib.optionals withParmetis [ metis parmetis ];
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prePatch = lib.optionalString stdenv.isDarwin ''
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substituteInPlace config/install.py \
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# These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.
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patches = [ ./filter_mpi_warnings.patch ];
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configureFlags = [
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"--with-blas=1"
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"--with-lapack=1"
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"--with-scalar-type=${petsc-scalar-type}"
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"--with-precision=${petsc-precision}"
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"--with-mpi=${if mpiSupport then "1" else "0"}"
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] ++ lib.optionals mpiSupport [
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"--CC=mpicc"
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"--with-cxx=mpicxx"
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"--with-fc=mpif90"
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] ++ lib.optionals (mpiSupport && withParmetis) [
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"--with-metis=1"
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"--with-metis-dir=${metis}"
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"--with-parmetis=1"
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"--with-parmetis-dir=${parmetis}"
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] ++ lib.optionals petsc-optimized [
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"--with-debugging=0"
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"COPTFLAGS=-O3"
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"FOPTFLAGS=-O3"
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"CXXOPTFLAGS=-O3"
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"CXXFLAGS=-O3"
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];
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preConfigure = ''
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patchShebangs ./lib/petsc/bin
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configureFlagsArray=(
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$configureFlagsArray
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${
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if !mpiSupport then
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''
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"--with-mpi=0"
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''
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else
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''
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"--CC=mpicc"
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"--with-cxx=mpicxx"
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"--with-fc=mpif90"
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"--with-mpi=1"
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"--with-metis=1"
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"--with-metis-dir=${metis}"
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"--with-parmetis=1"
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"--with-parmetis-dir=${parmetis}"
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''
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}
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${lib.optionalString withp4est ''
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"--with-p4est=1"
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"--with-zlib-include=${zlib.dev}/include"
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"--with-zlib-lib=-L${zlib}/lib -lz"
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''}
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${lib.optionalString hdf5-support ''
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"--with-hdf5=1"
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"--with-hdf5-fortran-bindings=1"
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"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
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"--with-hdf5-include=${hdf5.dev}/include"
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''}
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"--with-blas=1"
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"--with-lapack=1"
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"--with-scalar-type=${petsc-scalar-type}"
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"--with-precision=${petsc-precision}"
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${lib.optionalString petsc-optimized ''
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"--with-debugging=0"
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COPTFLAGS='-O3'
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FOPTFLAGS='-O3'
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CXXOPTFLAGS='-O3'
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CXXFLAGS='-O3'
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''}
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'' + lib.optionalString petsc-withp4est ''
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configureFlagsArray+=(
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"--with-p4est=1"
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"--with-zlib-include=${zlib.dev}/include"
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"--with-zlib-lib=-L${zlib}/lib -lz"
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)
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'' + lib.optionalString hdf5-support ''
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configureFlagsArray+=(
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"--with-hdf5=1"
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"--with-hdf5-fortran-bindings=1"
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"--with-hdf5-include=${hdf5.dev}/include"
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"--with-hdf5-lib=-L${hdf5}/lib -lhdf5"
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)
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'';
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