pyrox.dev
hmmer: enable aarch64 support (#370495)
authored by Weijia Wang and committed by GitHub 2cb020b4 4ed39fe8
+49
pkgs/by-name/ea/easel/package.nix
+49
pkgs/by-name/ea/easel/package.nix
···
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{
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lib,
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stdenv,
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fetchFromGitHub,
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autoreconfHook,
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perl,
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python3,
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versionCheckHook,
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}:
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stdenv.mkDerivation (finalAttrs: {
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pname = "easel";
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version = "0.49";
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src = fetchFromGitHub {
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owner = "EddyRivasLab";
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repo = "easel";
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tag = "easel-${finalAttrs.version}";
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hash = "sha256-NSKy7ptNYR0K/VFJNv+5TGWdC1ZM4Y5i/3L+3Coj/sg=";
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};
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nativeBuildInputs = [ autoreconfHook ];
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enableParallelBuilding = true;
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doCheck = true;
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nativeCheckInputs = [
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perl
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python3
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];
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preCheck = ''
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patchShebangs devkit/sqc
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'';
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doInstallCheck = true;
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nativeInstallCheckInputs = [ versionCheckHook ];
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meta = {
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description = "Sequence analysis library used by Eddy/Rivas lab code";
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homepage = "https://github.com/EddyRivasLab/easel";
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license = lib.licenses.bsd2;
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mainProgram = "easel";
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maintainers = with lib.maintainers; [ natsukium ];
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platforms = lib.platforms.unix;
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};
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})
+35
-10
pkgs/by-name/hm/hmmer/package.nix
+35
-10
pkgs/by-name/hm/hmmer/package.nix
···
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lib,
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stdenv,
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fetchurl,
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easel,
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perl,
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python3,
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versionCheckHook,
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}:
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stdenv.mkDerivation rec {
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stdenv.mkDerivation (finalAttrs: {
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version = "3.4";
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pname = "hmmer";
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src = fetchurl {
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url = "http://eddylab.org/software/hmmer/${pname}-${version}.tar.gz";
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sha256 = "sha256-ynDZT9DPJxvXBjQjqrsRbULeUzEXNDqbJ6ZcF/8G+/M=";
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url = "http://eddylab.org/software/hmmer/hmmer-${finalAttrs.version}.tar.gz";
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hash = "sha256-ynDZT9DPJxvXBjQjqrsRbULeUzEXNDqbJ6ZcF/8G+/M=";
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};
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meta = with lib; {
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enableParallelBuilding = true;
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doCheck = true;
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nativeCheckInputs = [
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perl
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python3
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];
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preCheck = ''
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install -Dm755 ${easel.src}/devkit/sqc easel/devkit/sqc
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patchShebangs easel/devkit/sqc testsuite/* src/hmmpress.itest.pl
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'';
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doInstallCheck = true;
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nativeInstallCheckInputs = [ versionCheckHook ];
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versionCheckProgram = "${placeholder "out"}/bin/hmmalign";
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versionCheckProgramArg = [ "-h" ];
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meta = {
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description = "Biosequence analysis using profile hidden Markov models";
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longDescription = ''
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HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
···
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HMMER can be downloaded and installed as a command line tool on your own hardware, and now it is also more widely accessible to the scientific community via new search servers at the European Bioinformatics Institute.
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'';
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homepage = "http://hmmer.org/";
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changelog = "https://github.com/EddyRivasLab/hmmer/blob/hmmer-${version}/release-notes/RELEASE-${version}.md";
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license = licenses.gpl3;
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maintainers = [ maintainers.iimog ];
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# at least SSE is *required*
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platforms = platforms.x86_64;
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changelog = "https://github.com/EddyRivasLab/hmmer/blob/hmmer-${finalAttrs.version}/release-notes/RELEASE-${finalAttrs.version}.md";
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license = lib.licenses.bsd3;
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maintainers = [ lib.maintainers.iimog ];
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platforms = lib.platforms.unix;
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};
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}
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})