byarielm.fyi
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README.md
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README.md
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# sc-ImmuCC: Hierarchical annotation for immune cell types in single-cell RNA-Seq
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The below demonstrates the result of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package)
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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library(scImmuCC)
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data(package="scImmuCC)
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data(test_data,package="scImmuCC") # load the test data
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count <- as.matrix(test_data) # Convert test data to matrix
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test <- scImmuCC_Layered(count = count ,Non_Immune = FALSE)
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</div>
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# Installation
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R programming language >= 4.1.1 ，packages Seurat and GSVA are required to use scImmuCC.
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remotes::install_github("wuaipinglab/scImmuCC")
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</div>
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# Example
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Below is an example of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package)
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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library(scImmuCC)
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data(package="scImmuCC)
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data(test_data,package="scImmuCC") # load the test data
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count <- as.matrix(test_data) # Convert test data to matrix
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test <- scImmuCC_Layered(count = count ,Non_Immune = FALSE)
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</div>
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# QuickStart
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The following is a quick tutorial on how to use scImmuCC to annotate immune cell types in scRNA-Seq.
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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library(scImmuCC)