byarielm.fyi
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README.md
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README.md
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</div>
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# Installation
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R programming language >= 4.1.1 is required to use scImmuCC.
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R programming language >= 4.1.1 ，packages Seurat and GSVA are required to use scImmuCC.
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The installation from GitHub is in experimental stage but gives the newest feature:
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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if (!requireNamespace("Seurat", quietly = TRUE))
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install.packages("Seurat")
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if (!requireNamespace("GSVA", quietly = TRUE))
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BiocManager::install("GSVA")
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if (!requireNamespace("remotes", quietly = TRUE))
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install.packages("remotes")
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remotes::install_github("wuaipinglab/scImmuCC")
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</div>
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count <- as.matrix(count)
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test <- scImmuCC_Layered(test_data,Non_Immune=FALSE)
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##if your data have non-immune cell, Nn_Immune = TRUE
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test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) ##if your data have non-immune cell, Nn_Immune = TRUE
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</div>
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The annotation results will be output in your current running directory。