byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
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··· 31 31 count <- read.csv(file=filename) #read your scRNA-Seq file 32 32 dim(count) 33 33 count <- as.matrix(count) 34 - test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) ## if your data have non-immune cell, Nn_Immune = TRUE 34 + test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) #if your data have non-immune cell, Nn_Immune = TRUE 35 35 36 36 The annotation results will be output in your current running directory。 37 37