byarielm.fyi
+19
-1
README.md
+19
-1
README.md
···
24
24
remotes::install_github("wuaipinglab/scImmuCC")
25
25
26
26
# QuickStart
27
-
The following is a quick tutorial on how to use scImmuCC to annotate immune cell types in scRNA-Seq
27
+
The following is a quick tutorial on how to use scImmuCC to annotate immune cell types in scRNA-Seq.
28
+
29
+
library(scImmuCC)
30
+
31
+
count <- read.csv(file=filename) #read your scRNA-Seq file
32
+
dim(count)
33
+
count <- as.matrix(count)
34
+
test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) ## if your data have non-immune cell, Nn_Immune = TRUE
35
+
36
+
The annotation results will be output in your current running directory。
37
+
38
+
39
+
40
+
41
+
42
+
43
+
44
+
45
+
28
46