Merge staging-next into staging

lib/attrsets.nix

···
   getBin = getOutput "bin";
   getLib = getOutput "lib";
   getDev = getOutput "dev";
+  getMan = getOutput "man";
 
   /* Pick the outputs of packages to place in buildInputs */
   chooseDevOutputs = drvs: builtins.map getDev drvs;

lib/default.nix

···
       genAttrs isDerivation toDerivation optionalAttrs
       zipAttrsWithNames zipAttrsWith zipAttrs recursiveUpdateUntil
       recursiveUpdate matchAttrs overrideExisting getOutput getBin
-      getLib getDev chooseDevOutputs zipWithNames zip
+      getLib getDev getMan chooseDevOutputs zipWithNames zip
       recurseIntoAttrs dontRecurseIntoAttrs;
     inherit (lists) singleton forEach foldr fold foldl foldl' imap0 imap1
       concatMap flatten remove findSingle findFirst any all count

nixos/doc/manual/release-notes/rl-2009.xml

···
 </programlisting>
     </para>
    </listitem>
+   <listitem>
+    <para>
+      Two new option <link linkend="opt-documentation.man.generateCaches">documentation.man.generateCaches</link>
+      has been added to automatically generate the <literal>man-db</literal> caches, which are needed by utilities
+      like <command>whatis</command> and <command>apropos</command>. The caches are generated during the build of
+      the NixOS configuration: since this can be expensive when a large number of packages are installed, the
+      feature is disabled by default.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 

nixos/modules/misc/documentation.nix

···
         '';
       };
 
+      man.generateCaches = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Whether to generate the manual page index caches using
+          <literal>mandb(8)</literal>. This allows searching for a page or
+          keyword using utilities like <literal>apropos(1)</literal>.
+        '';
+      };
+
       info.enable = mkOption {
         type = types.bool;
         default = true;
···
       environment.systemPackages = [ pkgs.man-db ];
       environment.pathsToLink = [ "/share/man" ];
       environment.extraOutputsToInstall = [ "man" ] ++ optional cfg.dev.enable "devman";
-      environment.etc."man.conf".source = "${pkgs.man-db}/etc/man_db.conf";
+      environment.etc."man_db.conf".text =
+        let
+          manualPages = pkgs.buildEnv {
+            name = "man-paths";
+            paths = config.environment.systemPackages;
+            pathsToLink = [ "/share/man" ];
+            extraOutputsToInstall = ["man"];
+            ignoreCollisions = true;
+          };
+          manualCache = pkgs.runCommandLocal "man-cache" { }
+          ''
+            echo "MANDB_MAP ${manualPages}/share/man $out" > man.conf
+            ${pkgs.man-db}/bin/mandb -C man.conf -psc
+          '';
+        in
+        ''
+          # Manual pages paths for NixOS
+          MANPATH_MAP /run/current-system/sw/bin /run/current-system/sw/share/man
+          MANPATH_MAP /run/wrappers/bin          /run/current-system/sw/share/man
+
+          ${optionalString cfg.man.generateCaches ''
+          # Generated manual pages cache for NixOS (immutable)
+          MANDB_MAP /run/current-system/sw/share/man ${manualCache}
+          ''}
+          # Manual pages caches for NixOS
+          MANDB_MAP /run/current-system/sw/share/man /var/cache/man/nixos
+        '';
     })
 
     (mkIf cfg.info.enable {

pkgs/data/icons/numix-icon-theme/default.nix

···
 
 stdenv.mkDerivation rec {
   pname = "numix-icon-theme";
-  version = "20.03.20";
+  version = "20.06.07";
 
   src = fetchFromGitHub {
     owner = "numixproject";
     repo = pname;
     rev = version;
-    sha256 = "092f8k38xf9yz898nrangm0ia211d41z8kx0v6njfqfgpiad1s7q";
+    sha256 = "1yp9parc8ihmai8pswf4qzrqd88qpls87ipq8ylx38yqns7wsn4h";
   };
 
   nativeBuildInputs = [ gtk3 ];

pkgs/desktops/gnome-3/core/nautilus/default.nix

···
 
 stdenv.mkDerivation rec {
   pname = "nautilus";
-  version = "3.36.2";
+  version = "3.36.3";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "1yknaz8n0l949sr8j3b7kdm0cm5mx2dp4n4k577m492hk6akqrr6";
+    sha256 = "1y0fsd7j48v4qkc051cg41mz7jycgw4vd4g37lw682p7n5xgrjmn";
   };
 
   nativeBuildInputs = [

pkgs/development/libraries/ffmpeg-full/default.nix

···
   pname = "ffmpeg-full";
   inherit (ffmpeg) src version;
 
-  patches = [ ./prefer-libdav1d-over-libaom.patch ];
-
   prePatch = ''
     patchShebangs .
   '' + stdenv.lib.optionalString stdenv.isDarwin ''

pkgs/development/libraries/ffmpeg-full/prefer-libdav1d-over-libaom.patch

···
-diff --git a/libavcodec/allcodecs.c b/libavcodec/allcodecs.c
-index d2f9a39ce5..2342399a8e 100644
---- a/libavcodec/allcodecs.c
-+++ b/libavcodec/allcodecs.c
-@@ -679,13 +679,13 @@ extern AVCodec ff_pcm_mulaw_at_encoder;
- extern AVCodec ff_pcm_mulaw_at_decoder;
- extern AVCodec ff_qdmc_at_decoder;
- extern AVCodec ff_qdm2_at_decoder;
-+extern AVCodec ff_libdav1d_decoder;
- extern AVCodec ff_libaom_av1_decoder;
- extern AVCodec ff_libaom_av1_encoder;
- extern AVCodec ff_libaribb24_decoder;
- extern AVCodec ff_libcelt_decoder;
- extern AVCodec ff_libcodec2_encoder;
- extern AVCodec ff_libcodec2_decoder;
--extern AVCodec ff_libdav1d_decoder;
- extern AVCodec ff_libdavs2_decoder;
- extern AVCodec ff_libfdk_aac_encoder;
- extern AVCodec ff_libfdk_aac_decoder;

pkgs/development/libraries/ffmpeg/4.nix

···
 }@args:
 
 callPackage ./generic.nix (rec {
-  version = "4.2.3";
-  branch = "4.2";
-  sha256 = "0pkrariwjv25k7inwshch7b5820ly3hsp991amyb60rkqc8v4zi1";
+  version = "4.3";
+  branch = "4.3";
+  sha256 = "1qnnhd2b0g5sg72pclxs3i8sxzz0raky69k7w9cmpba9zh973s57";
   darwinFrameworks = [ Cocoa CoreMedia VideoToolbox ];
 } // args)

pkgs/development/libraries/json-c/default.nix

···
-{ stdenv, fetchurl, autoconf }:
+{ stdenv, fetchurl, fetchpatch, autoconf }:
 
 stdenv.mkDerivation rec {
   name = "json-c-0.13.1";
···
     url    = "https://s3.amazonaws.com/json-c_releases/releases/${name}-nodoc.tar.gz";
     sha256 = "0ch1v18wk703bpbyzj7h1mkwvsw4rw4qdwvgykscypvqq10678ll";
   };
+
+  patches = [
+    # https://nvd.nist.gov/vuln/detail/CVE-2020-12762
+    (fetchpatch {
+      name = "CVE-2020-12762.patch";
+      url = "https://github.com/json-c/json-c/commit/865b5a65199973bb63dff8e47a2f57e04fec9736.patch";
+      sha256 = "1g5afk4khhm1sb70xrva1pyznshcw3ipzp1g5z60dpzxy303pp6h";
+    })
+  ];
 
   outputs = [ "out" "dev" ];
 

pkgs/development/libraries/libgcrypt/default.nix

···
   configureFlags = [ "--with-libgpg-error-prefix=${libgpgerror.dev}" ]
    ++ stdenv.lib.optional stdenv.hostPlatform.isMusl "--disable-asm";
 
+  # Necessary to generate correct assembly when compiling for aarch32 on
+  # aarch64
+  configurePlatforms = [ "host" "build" ];
+
   # Make sure libraries are correct for .pc and .la files
   # Also make sure includes are fixed for callers who don't use libgpgcrypt-config
   postFixup = ''

pkgs/development/libraries/libjpeg-turbo/default.nix

···
         url = "https://github.com/libjpeg-turbo/libjpeg-turbo/commit/a2291b252de1413a13db61b21863ae7aea0946f3.patch";
         sha256 = "0nc5vcch5h52gpi07h08zf8br58q8x81q2hv871hrn0dinb53vym";
       })
+
+      (fetchpatch {
+        name = "cve-2020-13790.patch";
+        url = "https://github.com/libjpeg-turbo/libjpeg-turbo/commit/3de15e0c344d.diff";
+        sha256 = "0hm5i6qir5w3zxb0xvqdh4jyvbfg7xnd28arhyfsaclfz9wdb0pb";
+      })
     ] ++
     stdenv.lib.optional (stdenv.hostPlatform.libc or null == "msvcrt")
       ./mingw-boolean.patch;

pkgs/development/libraries/libksba/default.nix

···
 { buildPackages, stdenv, fetchurl, gettext, libgpgerror }:
 
 stdenv.mkDerivation rec {
-  name = "libksba-1.3.5";
+  name = "libksba-1.4.0";
 
   src = fetchurl {
     url = "mirror://gnupg/libksba/${name}.tar.bz2";
-    sha256 = "0h53q4sns1jz1pkmhcz5wp9qrfn9f5g9i3vjv6dafwzzlvblyi21";
+    sha256 = "1dj1razn35srkgadx3i30yr0q037cr0dn54m6a54vxgh3zlsirmz";
   };
 
   outputs = [ "out" "dev" "info" ];

pkgs/development/libraries/libqmi/default.nix

···
-{ stdenv, fetchurl, pkgconfig, glib, python3, libgudev, libmbim }:
+{ stdenv, fetchurl, pkg-config, gobject-introspection, glib, python3, libgudev, libmbim }:
 
 stdenv.mkDerivation rec {
   pname = "libqmi";
-  version = "1.24.12";
+  version = "1.25.900";
 
   src = fetchurl {
     url = "https://www.freedesktop.org/software/libqmi/${pname}-${version}.tar.xz";
-    sha256 = "0scb8a2kh0vnzx6kxanfy2s2slnfppvrwg202rxv30m8p2i92frd";
+    sha256 = "0a96f4ab7qy4szwzqs8ir2mvsnpqzk7zsiv6zahlhpf0jhp1vxf7";
   };
 
   outputs = [ "out" "dev" "devdoc" ];
 
   configureFlags = [
     "--with-udev-base-dir=${placeholder "out"}/lib/udev"
+    "--enable-introspection"
   ];
 
   nativeBuildInputs = [
-    pkgconfig
+    pkg-config
+    gobject-introspection
     python3
   ];
 

pkgs/development/libraries/nv-codec-headers/default.nix

···
 
 stdenv.mkDerivation rec {
   pname = "nv-codec-headers";
-  version = "9.0.18.1";
+  version = "9.1.23.1";
 
   src = fetchgit {
     url = "https://git.videolan.org/git/ffmpeg/nv-codec-headers.git";
     rev = "n${version}";
-    sha256 = "0354fivb92ix341jds7a7qn3mgwimrnxbganhlhr4vayj25c3hw5";
+    sha256 = "1xfvb3mhz6wfx9c732888xa82ivaig903lhvvrqqzs31qfznsplh";
   };
 
   makeFlags = [ "PREFIX=$(out)" ];

pkgs/development/libraries/science/math/openblas/default.nix

···
 in
 stdenv.mkDerivation rec {
   pname = "openblas";
-  version = "0.3.9";
+  version = "0.3.10";
   src = fetchFromGitHub {
     owner = "xianyi";
     repo = "OpenBLAS";
     rev = "v${version}";
-    sha256 = "0nq51j45shb32n6086xff3x374kx5qhr2cwjzvppx4s2z0ahflal";
+    sha256 = "174id98ga82bhz2v7sy9yj6pqy0h0088p3mkdikip69p9rh3d17b";
   };
 
   inherit blas64;

pkgs/development/python-modules/flake8/default.nix

···
 { stdenv, buildPythonPackage, fetchPypi, pythonOlder
 , mock, pytest, pytestrunner
-, configparser, enum34, mccabe, pycodestyle, pyflakes, entrypoints, functools32, typing
+, configparser, enum34, mccabe, pycodestyle, pyflakes, functools32, typing, importlib-metadata
 }:
 
 buildPythonPackage rec {
···
   };
 
   checkInputs = [ pytest mock pytestrunner ];
-  propagatedBuildInputs = [ entrypoints pyflakes pycodestyle mccabe ]
+  propagatedBuildInputs = [ pyflakes pycodestyle mccabe ]
     ++ stdenv.lib.optionals (pythonOlder "3.2") [ configparser functools32 ]
     ++ stdenv.lib.optionals (pythonOlder "3.4") [ enum34 ]
-    ++ stdenv.lib.optionals (pythonOlder "3.5") [ typing ];
+    ++ stdenv.lib.optionals (pythonOlder "3.5") [ typing ]
+    ++ stdenv.lib.optionals (pythonOlder "3.8") [ importlib-metadata ];
 
   checkPhase = ''
     py.test tests

pkgs/development/tools/build-managers/cmake/default.nix

···
           + lib.optionalString useNcurses "-cursesUI"
           + lib.optionalString withQt5 "-qt5UI"
           + lib.optionalString useQt4 "-qt4UI";
-  version = "3.17.2";
+  version = "3.17.3";
 
   src = fetchurl {
     url = "${meta.homepage}files/v${lib.versions.majorMinor version}/cmake-${version}.tar.gz";
     # compare with https://cmake.org/files/v${lib.versions.majorMinor version}/cmake-${version}-SHA-256.txt
-    sha256 = "199srp8yfai51pcbpmfyc4s8vzrmh2dm91bp582hj2l29x634xzw";
+    sha256 = "0h4c3nwk7wmzcmmlwyb16zmjqr44l4k591m2y9p9zp3m498hvmhb";
   };
 
   patches = [

pkgs/development/tools/parsing/bison/default.nix

···
 
 stdenv.mkDerivation rec {
   pname = "bison";
-  version = "3.6.2";
+  version = "3.6.3";
 
   src = fetchurl {
     url = "mirror://gnu/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "16h8panwpljwdq902v9x7inpnks51fn0kqlbyqfjvpilv6md73p2";
+    sha256 = "0qry9ar16dpg9nzrq7jh3fqh4ah2xvcf6v00fc81z08yjd1ljk2b";
   };
 
   nativeBuildInputs = [ m4 perl ] ++ stdenv.lib.optional stdenv.isSunOS help2man;

pkgs/os-specific/linux/alsa-lib/default.nix

···
 { stdenv, fetchurl, alsa-ucm-conf, alsa-topology-conf }:
 
 stdenv.mkDerivation rec {
-  name = "alsa-lib-1.2.2";
+  name = "alsa-lib-1.2.3";
 
   src = fetchurl {
     url = "mirror://alsa/lib/${name}.tar.bz2";
-    sha256 = "1v5kb8jyvrpkvvq7dq8hfbmcj68lml97i4s0prxpfx2mh3c57s6q";
+    sha256 = "13k7dx1g749z74rz71hs5j8z0pqdjgx7l69pn0vsy7jizhi0kw02";
   };
 
   patches = [

pkgs/os-specific/linux/alsa-topology-conf/default.nix

···
 
 stdenv.mkDerivation rec {
   name = "alsa-topology-conf-${version}";
-  version = "1.2.2";
+  version = "1.2.3";
 
   src = fetchurl {
     url = "mirror://alsa/lib/${name}.tar.bz2";
-    sha256 = "09cls485ckdjsp4azhv3nw7chyg3r7zrqgald6yp70f7cysxcwml";
+    sha256 = "1zwxc9zhfcmyffjjbibzpdvf4kx7wv9g2zl6xz7y0d6srfr9jgw3";
   };
 
   dontBuild = true;

pkgs/os-specific/linux/alsa-ucm-conf/default.nix

···
 
 stdenv.mkDerivation rec {
   name = "alsa-ucm-conf-${version}";
-  version = "1.2.2";
+  version = "1.2.3";
 
   src = fetchurl {
     url = "mirror://alsa/lib/${name}.tar.bz2";
-    sha256 = "0364fgzdm2qrsqvgqri25gzscbma7yqlv31wz8b1z9c5phlxkgvy";
+    sha256 = "000db5yla7dljidjbbwbiaxvc1a7wh1zpw694gipaymj9fh4vhhv";
   };
 
   dontBuild = true;

pkgs/os-specific/linux/kernel/common-config.nix

···
       SND_HDA_RECONFIG    = yes; # Support reconfiguration of jack functions
       # Support configuring jack functions via fw mechanism at boot
       SND_HDA_PATCH_LOADER = yes;
-      SND_HDA_CODEC_CA0132_DSP = whenOlder "5.8" yes; # Enable DSP firmware loading on Creative Soundblaster Z/Zx/ZxR/Recon
+      SND_HDA_CODEC_CA0132_DSP = whenOlder "5.7" yes; # Enable DSP firmware loading on Creative Soundblaster Z/Zx/ZxR/Recon
       SND_OSSEMUL         = yes;
       SND_USB_CAIAQ_INPUT = yes;
       # Enable PSS mixer (Beethoven ADSP-16 and other compatible)

pkgs/os-specific/linux/systemd/0001-Start-device-units-for-uninitialised-encrypted-devic.patch

···
-From b873e4c0de3e24f2ec9370e5a217247217e90587 Mon Sep 17 00:00:00 2001
+From 22f46f55c81d84e83a4614856d84e63c8400165c Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Tue, 8 Jan 2013 15:46:30 +0100
 Subject: [PATCH 01/18] Start device units for uninitialised encrypted devices

pkgs/os-specific/linux/systemd/0002-Don-t-try-to-unmount-nix-or-nix-store.patch

···
-From bdd3ff777dd8253ff5732118dd6de0fa9a9b95fe Mon Sep 17 00:00:00 2001
+From e5b2b1e90d055068936336f6f01639bcde251b96 Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Fri, 12 Apr 2013 13:16:57 +0200
 Subject: [PATCH 02/18] Don't try to unmount /nix or /nix/store
···
 
 https://github.com/NixOS/nixos/issues/126
 ---
- src/core/mount.c      | 2 ++
- src/shutdown/umount.c | 2 ++
+ src/shared/fstab-util.c | 2 ++
+ src/shutdown/umount.c   | 2 ++
  2 files changed, 4 insertions(+)
 
-diff --git a/src/core/mount.c b/src/core/mount.c
-index 1c4aefd734..a5553226f8 100644
---- a/src/core/mount.c
-+++ b/src/core/mount.c
-@@ -412,6 +412,8 @@ static bool mount_is_extrinsic(Mount *m) {
- 
-         if (PATH_IN_SET(m->where,  /* Don't bother with the OS data itself */
-                         "/",       /* (strictly speaking redundant: should already be covered by the perpetual flag check above) */
+diff --git a/src/shared/fstab-util.c b/src/shared/fstab-util.c
+index b19127be09..f9adca1100 100644
+--- a/src/shared/fstab-util.c
++++ b/src/shared/fstab-util.c
+@@ -40,6 +40,8 @@ bool fstab_is_extrinsic(const char *mount, const char *opts) {
+         /* Don't bother with the OS data itself */
+         if (PATH_IN_SET(mount,
+                         "/",
 +                        "/nix",
 +                        "/nix/store",
                          "/usr",

pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch

···
-From c28b3b2e254433e93549ee6fe8c93b43ce455776 Mon Sep 17 00:00:00 2001
+From ca7f6286c518d7ef3877458bbdf8e01f5518ab0e Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Wed, 16 Apr 2014 10:59:28 +0200
 Subject: [PATCH 03/18] Fix NixOS containers
···
  1 file changed, 2 insertions(+)
 
 diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c
-index 734dee1130..a97b1a4bc9 100644
+index 51d0c2a75b..4d3451ff3b 100644
 --- a/src/nspawn/nspawn.c
 +++ b/src/nspawn/nspawn.c
-@@ -5018,6 +5018,7 @@ static int run(int argc, char *argv[]) {
+@@ -5017,6 +5017,7 @@ static int run(int argc, char *argv[]) {
                                  goto finish;
                          }
                  } else {
···
                          const char *p, *q;
  
                          if (arg_pivot_root_new)
-@@ -5032,6 +5033,7 @@ static int run(int argc, char *argv[]) {
+@@ -5031,6 +5032,7 @@ static int run(int argc, char *argv[]) {
                                  r = -EINVAL;
                                  goto finish;
                          }

pkgs/os-specific/linux/systemd/0004-Look-for-fsck-in-the-right-place.patch

···
-From baf52609ad18785aa1d2cd043185ae9438d59411 Mon Sep 17 00:00:00 2001
+From c87cc5b1cf9c37f195e6b362352279e14289554e Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Thu, 1 May 2014 14:10:10 +0200
 Subject: [PATCH 04/18] Look for fsck in the right place

pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch

···
-From 45f80155b7c2edb1e73c233283f1ab1582e1cfbe Mon Sep 17 00:00:00 2001
+From 450c133c1815b473136b2a5540f9213fef5506ee Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Fri, 19 Dec 2014 14:46:17 +0100
 Subject: [PATCH 05/18] Add some NixOS-specific unit directories

pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch

···
-From d52058070c0c12bb05f82460f0b4b55678b724e9 Mon Sep 17 00:00:00 2001
+From f88a9bb1e6080b539ed0116caa9781e7f6755f54 Mon Sep 17 00:00:00 2001
 From: Eelco Dolstra <[e-mail]>
 Date: Mon, 11 May 2015 15:39:38 +0200
 Subject: [PATCH 06/18] Get rid of a useless message in user sessions
···
  1 file changed, 2 insertions(+), 1 deletion(-)
 
 diff --git a/src/core/unit.c b/src/core/unit.c
-index 97e1b0004c..d3cc2ba9ec 100644
+index c306183555..3db39fa435 100644
 --- a/src/core/unit.c
 +++ b/src/core/unit.c
 @@ -2043,7 +2043,8 @@ static void unit_check_binds_to(Unit *u) {

pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch

···
-From 409fc808794942ad1736c2cc74853d9792e4ad02 Mon Sep 17 00:00:00 2001
+From e2b25ce3606d05ff8a387185c41ab32fb2a36161 Mon Sep 17 00:00:00 2001
 From: Gabriel Ebner <[e-mail]>
 Date: Sun, 6 Dec 2015 14:26:36 +0100
 Subject: [PATCH 07/18] hostnamed, localed, timedated: disable methods that

pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch

···
-From b56fc7b6ae8014eb2f71924c89498f395a1a81bd Mon Sep 17 00:00:00 2001
+From 5a6aad633a7ceffd62b009ce0c4ab6673129f7ff Mon Sep 17 00:00:00 2001
 From: Nikolay Amiantov <[e-mail]>
 Date: Thu, 7 Jul 2016 02:47:13 +0300
 Subject: [PATCH 08/18] Fix hwdb paths

pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch

···
-From 4d304a321796db4de827aa39a149bea23d039214 Mon Sep 17 00:00:00 2001
+From b509dbd302a7933ae0002f44b99aac6a1fd5775b Mon Sep 17 00:00:00 2001
 From: Nikolay Amiantov <[e-mail]>
 Date: Tue, 11 Oct 2016 13:12:08 +0300
 Subject: [PATCH 09/18] Change /usr/share/zoneinfo to /etc/zoneinfo
···
          (void) mkdir_parents(etc_localtime, 0755);
          if (symlink(e, etc_localtime) < 0)
 diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c
-index a97b1a4bc9..aed60439e3 100644
+index 4d3451ff3b..1adb91335c 100644
 --- a/src/nspawn/nspawn.c
 +++ b/src/nspawn/nspawn.c
 @@ -1657,8 +1657,8 @@ static int userns_mkdir(const char *root, const char *path, mode_t mode, uid_t u

pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch

···
-From cb3f1ec1793cbf74c4b5663e038bd49ff4576192 Mon Sep 17 00:00:00 2001
+From b5665ef8b9266c662c3a137df1ef1721cdff346e Mon Sep 17 00:00:00 2001
 From: Imuli <[e-mail]>
 Date: Wed, 19 Oct 2016 08:46:47 -0400
 Subject: [PATCH 10/18] localectl: use /etc/X11/xkb for list-x11-*

pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch

···
-From 0ffb786d0e12a61899af448b1e4dd32a53ea5a8e Mon Sep 17 00:00:00 2001
+From be6b5c37779302384079b22b7fd767daad878fa9 Mon Sep 17 00:00:00 2001
 From: Franz Pletz <[e-mail]>
 Date: Sun, 11 Feb 2018 04:37:44 +0100
 Subject: [PATCH 11/18] build: don't create statedir and don't touch prefixdir
···
  1 file changed, 3 deletions(-)
 
 diff --git a/meson.build b/meson.build
-index fc216d22da..078db3bb5d 100644
+index c09115e06a..62eba4186c 100644
 --- a/meson.build
 +++ b/meson.build
-@@ -3176,9 +3176,6 @@ install_data('LICENSE.GPL2',
+@@ -3184,9 +3184,6 @@ install_data('LICENSE.GPL2',
               'src/libsystemd/sd-bus/GVARIANT-SERIALIZATION',
               install_dir : docdir)
  

pkgs/os-specific/linux/systemd/0012-Install-default-configuration-into-out-share-factory.patch

···
-From 3dbcdab1ba22c4eeca6d61718c09bcb9b5551764 Mon Sep 17 00:00:00 2001
+From 9262f52b0e30cf8c39d9f7684a8c0e8fd4887cd5 Mon Sep 17 00:00:00 2001
 From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <[e-mail]>
 Date: Mon, 26 Feb 2018 14:25:57 +0000
 Subject: [PATCH 12/18] Install default configuration into $out/share/factory
···
          meson.add_install_script('sh', '-c',
                                   'test -n "$DESTDIR" || @0@/systemd-hwdb update'
 diff --git a/meson.build b/meson.build
-index 078db3bb5d..6e1a6483fc 100644
+index 62eba4186c..b0b2edbb5a 100644
 --- a/meson.build
 +++ b/meson.build
 @@ -154,6 +154,9 @@ udevhwdbdir = join_paths(udevlibexecdir, 'hwdb.d')
···
  bootlibdir = join_paths(prefixdir, 'lib/systemd/boot/efi')
  testsdir = join_paths(prefixdir, 'lib/systemd/tests')
  systemdstatedir = join_paths(localstatedir, 'lib/systemd')
-@@ -2503,7 +2506,7 @@ if conf.get('ENABLE_BINFMT') == 1
+@@ -2511,7 +2514,7 @@ if conf.get('ENABLE_BINFMT') == 1
          meson.add_install_script('sh', '-c',
                                   mkdir_p.format(binfmtdir))
          meson.add_install_script('sh', '-c',
···
  endif
  
  if conf.get('ENABLE_REPART') == 1
-@@ -2604,7 +2607,7 @@ executable('systemd-sleep',
+@@ -2612,7 +2615,7 @@ executable('systemd-sleep',
             install_dir : rootlibexecdir)
  
  install_data('src/sleep/sleep.conf',
···
  
  exe = executable('systemd-sysctl',
                   'src/sysctl/sysctl.c',
-@@ -2916,7 +2919,7 @@ if conf.get('HAVE_KMOD') == 1
+@@ -2924,7 +2927,7 @@ if conf.get('HAVE_KMOD') == 1
          meson.add_install_script('sh', '-c',
                                   mkdir_p.format(modulesloaddir))
          meson.add_install_script('sh', '-c',
···
  endif
  
  exe = executable('systemd-nspawn',
-@@ -3159,7 +3162,7 @@ install_subdir('factory/etc',
+@@ -3167,7 +3170,7 @@ install_subdir('factory/etc',
                 install_dir : factorydir)
  
  install_data('xorg/50-systemd-user.sh',

pkgs/os-specific/linux/systemd/0013-inherit-systemd-environment-when-calling-generators.patch

···
-From 0b0510aa72cf8026f34f300efa3f150f45971404 Mon Sep 17 00:00:00 2001
+From 05c2761f6a981c8576fc47a3dd8beb5a2af3ef09 Mon Sep 17 00:00:00 2001
 From: Andreas Rammhold <[e-mail]>
 Date: Fri, 2 Nov 2018 21:15:42 +0100
 Subject: [PATCH 13/18] inherit systemd environment when calling generators.
···
  1 file changed, 8 insertions(+), 3 deletions(-)
 
 diff --git a/src/core/manager.c b/src/core/manager.c
-index 25afdbea04..7afd5e5a37 100644
+index 4412e7a849..b799eeca95 100644
 --- a/src/core/manager.c
 +++ b/src/core/manager.c
-@@ -3896,9 +3896,14 @@ static int manager_run_generators(Manager *m) {
+@@ -3901,9 +3901,14 @@ static int manager_run_generators(Manager *m) {
          argv[4] = NULL;
  
          RUN_WITH_UMASK(0022)

pkgs/os-specific/linux/systemd/0014-add-rootprefix-to-lookup-dir-paths.patch

···
-From 4bd20cf0450455e2f9831b09ba91811ba3d58961 Mon Sep 17 00:00:00 2001
+From c70029539d0aec5df0c1e4203359335a3841a1e5 Mon Sep 17 00:00:00 2001
 From: Andreas Rammhold <[e-mail]>
 Date: Thu, 9 May 2019 11:15:22 +0200
 Subject: [PATCH 14/18] add rootprefix to lookup dir paths

pkgs/os-specific/linux/systemd/0015-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch

···
-From f23a1e00de028048a2a21d322493039cce7ee214 Mon Sep 17 00:00:00 2001
+From 98580b4aa34f3d2e7401f54d6561c5af27ea3437 Mon Sep 17 00:00:00 2001
 From: Nikolay Amiantov <[e-mail]>
 Date: Thu, 25 Jul 2019 20:45:55 +0300
 Subject: [PATCH 15/18] systemd-shutdown: execute scripts in
···
  1 file changed, 1 insertion(+), 1 deletion(-)
 
 diff --git a/src/shutdown/shutdown.c b/src/shutdown/shutdown.c
-index 15e6c1799e..412bdefe74 100644
+index 523040b57c..561d91c94c 100644
 --- a/src/shutdown/shutdown.c
 +++ b/src/shutdown/shutdown.c
-@@ -298,7 +298,7 @@ int main(int argc, char *argv[]) {
+@@ -299,7 +299,7 @@ int main(int argc, char *argv[]) {
          _cleanup_free_ char *cgroup = NULL;
          char *arguments[3], *watchdog_device;
          int cmd, r, umount_log_level = LOG_INFO;

pkgs/os-specific/linux/systemd/0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch

···
-From 758b8211e6e76524d62a2e0ffcf37dcf55e3be87 Mon Sep 17 00:00:00 2001
+From 3821e20966ee20f74986041f33c4934ad20385b2 Mon Sep 17 00:00:00 2001
 From: Nikolay Amiantov <[e-mail]>
 Date: Thu, 25 Jul 2019 20:46:58 +0300
 Subject: [PATCH 16/18] systemd-sleep: execute scripts in

pkgs/os-specific/linux/systemd/0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch

···
-From ce9fe2249c91fdfb224eaffce63e3dbdb4a5c25d Mon Sep 17 00:00:00 2001
+From b07defe819e0f66d08563690b3a5abea5da08620 Mon Sep 17 00:00:00 2001
 From: Florian Klink <[e-mail]>
 Date: Sat, 7 Mar 2020 22:40:27 +0100
 Subject: [PATCH 17/18] kmod-static-nodes.service: Update ConditionFileNotEmpty

pkgs/os-specific/linux/systemd/0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch

···
-From 55b69fc1b5441e3aff8f1ab684ba8eed3718a32d Mon Sep 17 00:00:00 2001
+From 9c1ac48a7d95c09bef5a924bb5db6908596403b4 Mon Sep 17 00:00:00 2001
 From: Florian Klink <[e-mail]>
 Date: Sun, 8 Mar 2020 01:05:54 +0100
 Subject: [PATCH 18/18] path-util.h: add placeholder for DEFAULT_PATH_NORMAL

pkgs/os-specific/linux/systemd/default.nix

···
   bzip2 = null;
 };
 in stdenv.mkDerivation {
-  version = "245.5";
+  version = "245.6";
   pname = "systemd";
 
   # When updating, use https://github.com/systemd/systemd-stable tree, not the development one!
···
   src = fetchFromGitHub {
     owner = "systemd";
     repo = "systemd-stable";
-    rev = "9a506b7e9291d997a920af9ac299e7b834368119";
-    sha256 = "19qd92hjlsljr6x5mbw1l2vdzz5y9hy7y7g0dwgpfifb0lwkxqbr";
+    rev = "aa0cb635f1f6a4d9b50ed2cca7782f3f751be933";
+    sha256 = "191f0r1g946bsqxky00z78wygsxi9pld11y2q4374bshnpsff2ll";
   };
 
   patches = [

pkgs/tools/misc/file/default.nix

···
 
 stdenv.mkDerivation rec {
   pname = "file";
-  version = "5.38";
+  version = "5.39";
 
   src = fetchurl {
     urls = [
       "ftp://ftp.astron.com/pub/file/${pname}-${version}.tar.gz"
       "https://distfiles.macports.org/file/${pname}-${version}.tar.gz"
     ];
-    sha256 = "0d7s376b4xqymnrsjxi3nsv3f5v89pzfspzml2pcajdk5by2yg2r";
+    sha256 = "1lgs2w2sgamzf27kz5h7pajz7v62554q21fbs11n4mfrfrm2hpgh";
   };
 
   nativeBuildInputs = stdenv.lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) file;

pkgs/tools/misc/man-db/default.nix

···
   buildInputs = [ libpipeline db groff ]; # (Yes, 'groff' is both native and build input)
   checkInputs = [ libiconv /* for 'iconv' binary */ ];
 
+  patches = [ ./systemwide-man-db-conf.patch ];
+
   postPatch = ''
     # Remove all mandatory manpaths. Nixpkgs makes no requirements on
     # these directories existing.
     sed -i 's/^MANDATORY_MANPATH/# &/' src/man_db.conf.in
 
-    # Add Nixpkgs and NixOS-related manpaths
-    echo "MANPATH_MAP	/run/current-system/sw/bin		/run/current-system/sw/share/man" >> src/man_db.conf.in
-    echo "MANPATH_MAP	/run/wrappers/bin			/run/current-system/sw/share/man" >> src/man_db.conf.in
+    # Add Nix-related manpaths
     echo "MANPATH_MAP	/nix/var/nix/profiles/default/bin	/nix/var/nix/profiles/default/share/man" >> src/man_db.conf.in
 
     # Add mandb locations for the above
-    echo "MANDB_MAP	/run/current-system/sw/share/man	/var/cache/man/nixos" >> src/man_db.conf.in
     echo "MANDB_MAP	/nix/var/nix/profiles/default/share/man	/var/cache/man/nixpkgs" >> src/man_db.conf.in
   '';
 
···
     "--disable-setuid"
     "--disable-cache-owner"
     "--localstatedir=/var"
-    # Don't try /etc/man_db.conf by default, so we avoid error messages.
     "--with-config-file=${placeholder "out"}/etc/man_db.conf"
     "--with-systemdtmpfilesdir=${placeholder "out"}/lib/tmpfiles.d"
     "--with-systemdsystemunitdir=${placeholder "out"}/lib/systemd/system"

pkgs/tools/misc/man-db/systemwide-man-db-conf.patch

···
+commit 9089291006a4258c39c75a920ad536b61504251a
+Author: rnhmjoj <[e-mail]>
+Date:   Fri May 1 19:32:15 2020 +0200
+
+    check for systemwide man_db.conf before the bundled one
+
+diff --git a/src/manp.c b/src/manp.c
+index 5441339..0bbf566 100644
+--- a/src/manp.c
++++ b/src/manp.c
+@@ -841,18 +841,24 @@ void read_config_file (bool optional)
+ 	}
+ 
+ 	if (getenv ("MAN_TEST_DISABLE_SYSTEM_CONFIG") == NULL) {
+-		config_file = fopen (CONFIG_FILE, "r");
++		const char *config_filepath;
++		if (access ("/etc/man_db.conf", F_OK) != -1) {
++			config_filepath = "/etc/man_db.conf";
++		} else {
++			config_filepath = CONFIG_FILE;
++		}
++		config_file = fopen (config_filepath, "r");
+ 		if (config_file == NULL) {
+ 			if (optional)
+ 				debug ("can't open %s; continuing anyway\n",
+-				       CONFIG_FILE);
++				       config_filepath);
+ 			else
+ 				error (FAIL, 0,
+ 				       _("can't open the manpath "
+ 					 "configuration file %s"),
+-				       CONFIG_FILE);
++				       config_filepath);
+ 		} else {
+-			debug ("From the config file %s:\n", CONFIG_FILE);
++			debug ("From the config file %s:\n", config_filepath);
+ 
+ 			add_to_dirlist (config_file, 0);
+ 			fclose (config_file);