tjh.dev / nixpkgs
Clone of https://github.com/NixOS/nixpkgs.git (to stress-test knotserver)
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work on fixing up bioconductor packages

Jeffrey David Johnson 3c0fb5ed c9934bbc

+2 -4
unified split
+2 -4
pkgs/development/r-modules/default.nix
··· 369 ShortRead = [ pkgs.zlib ]; 370 oligo = [ pkgs.zlib ]; 371 gmapR = [ pkgs.zlib ]; 372 - ncdf = [ pkgs.netcdf ]; 373 Rsubread = [ pkgs.zlib ]; 374 - SemiCompRisks = [ pkgs.gsl_1 ]; 375 XVector = [ pkgs.zlib ]; 376 Rsamtools = [ pkgs.zlib ]; 377 rtracklayer = [ pkgs.zlib ]; ··· 698 699 # Packages which cannot be installed due to lack of dependencies or other reasons. 700 brokenPackages = [ 701 "vmsbase" # broken build 702 "vcfR" # broken build 703 "strataG" # broken build ··· 1084 "rjags" # broken build 1085 "proteoQC" # depends on broken package rTANDEM 1086 "PGA" # depends on broken package rTANDEM 1087 - "cudatoolkit" # broken build 1088 "MBESS" # depends on broken package OpenMx 1089 "IONiseR" # depends on broken package rhdf5 1090 "DOQTL" # depends on broken package rhdf5 1091 "DmelSGI" # depends on broken package rhdf5 1092 "flowDiv" # depends on broken package ncdfFlow 1093 "ChemmineDrugs" # depends on broken package ChemmineR 1094 - "nlopt" # broken build 1095 "stpm" # depends on broken package nloptr 1096 "sjmisc" # depends on broken package nloptr 1097 "rstanarm" # depends on broken package nloptr
··· 369 ShortRead = [ pkgs.zlib ]; 370 oligo = [ pkgs.zlib ]; 371 gmapR = [ pkgs.zlib ]; 372 Rsubread = [ pkgs.zlib ]; 373 XVector = [ pkgs.zlib ]; 374 Rsamtools = [ pkgs.zlib ]; 375 rtracklayer = [ pkgs.zlib ]; ··· 696 697 # Packages which cannot be installed due to lack of dependencies or other reasons. 698 brokenPackages = [ 699 + "spoccutils" # depends on broken package spocc 700 + "mapr" # depends on broken package spocc 701 "vmsbase" # broken build 702 "vcfR" # broken build 703 "strataG" # broken build ··· 1084 "rjags" # broken build 1085 "proteoQC" # depends on broken package rTANDEM 1086 "PGA" # depends on broken package rTANDEM 1087 "MBESS" # depends on broken package OpenMx 1088 "IONiseR" # depends on broken package rhdf5 1089 "DOQTL" # depends on broken package rhdf5 1090 "DmelSGI" # depends on broken package rhdf5 1091 "flowDiv" # depends on broken package ncdfFlow 1092 "ChemmineDrugs" # depends on broken package ChemmineR 1093 "stpm" # depends on broken package nloptr 1094 "sjmisc" # depends on broken package nloptr 1095 "rstanarm" # depends on broken package nloptr