tjh.dev
1diff --git a/Makefile b/Makefile
2index 359585f..13ec279 100644
3--- a/Makefile
4+++ b/Makefile
5@@ -49,7 +49,6 @@ OBJS= src/fastmap.o src/bwtindex.o src/utils.o src/memcpy_bwamem.o src/kthread.
6 src/FMI_search.o src/read_index_ele.o src/bwamem_pair.o src/kswv.o src/bwa.o \
7 src/bwamem_extra.o src/kopen.o
8 BWA_LIB= libbwa.a
9-SAFE_STR_LIB= ext/safestringlib/libsafestring.a
10
11 ifeq ($(arch),sse41)
12 ifeq ($(CXX), icpc)
13@@ -101,16 +100,6 @@ CXXFLAGS+= -g -O3 -fpermissive $(ARCH_FLAGS) #-Wall ##-xSSE2
14 all:$(EXE)
15
16 multi:
17- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
18- $(MAKE) arch=sse41 EXE=bwa-mem2.sse41 CXX=$(CXX) all
19- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
20- $(MAKE) arch=sse42 EXE=bwa-mem2.sse42 CXX=$(CXX) all
21- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
22- $(MAKE) arch=avx EXE=bwa-mem2.avx CXX=$(CXX) all
23- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
24- $(MAKE) arch=avx2 EXE=bwa-mem2.avx2 CXX=$(CXX) all
25- rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean;
26- $(MAKE) arch=avx512 EXE=bwa-mem2.avx512bw CXX=$(CXX) all
27 $(CXX) -Wall -O3 src/runsimd.cpp -Iext/safestringlib/include -Lext/safestringlib/ -lsafestring $(STATIC_GCC) -o bwa-mem2
28
29
30@@ -120,12 +109,8 @@ $(EXE):$(BWA_LIB) $(SAFE_STR_LIB) src/main.o
31 $(BWA_LIB):$(OBJS)
32 ar rcs $(BWA_LIB) $(OBJS)
33
34-$(SAFE_STR_LIB):
35- cd ext/safestringlib/ && $(MAKE) clean && $(MAKE) CC=$(CC) directories libsafestring.a
36-
37 clean:
38 rm -fr src/*.o $(BWA_LIB) $(EXE) bwa-mem2.sse41 bwa-mem2.sse42 bwa-mem2.avx bwa-mem2.avx2 bwa-mem2.avx512bw
39- cd ext/safestringlib/ && $(MAKE) clean
40
41 depend:
42 (LC_ALL=C; export LC_ALL; makedepend -Y -- $(CXXFLAGS) $(CPPFLAGS) -I. -- src/*.cpp)