diff --git a/Makefile b/Makefile index 359585f..13ec279 100644 --- a/Makefile +++ b/Makefile @@ -49,7 +49,6 @@ OBJS= src/fastmap.o src/bwtindex.o src/utils.o src/memcpy_bwamem.o src/kthread. src/FMI_search.o src/read_index_ele.o src/bwamem_pair.o src/kswv.o src/bwa.o \ src/bwamem_extra.o src/kopen.o BWA_LIB= libbwa.a -SAFE_STR_LIB= ext/safestringlib/libsafestring.a ifeq ($(arch),sse41) ifeq ($(CXX), icpc) @@ -101,16 +100,6 @@ CXXFLAGS+= -g -O3 -fpermissive $(ARCH_FLAGS) #-Wall ##-xSSE2 all:$(EXE) multi: - rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; - $(MAKE) arch=sse41 EXE=bwa-mem2.sse41 CXX=$(CXX) all - rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; - $(MAKE) arch=sse42 EXE=bwa-mem2.sse42 CXX=$(CXX) all - rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; - $(MAKE) arch=avx EXE=bwa-mem2.avx CXX=$(CXX) all - rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; - $(MAKE) arch=avx2 EXE=bwa-mem2.avx2 CXX=$(CXX) all - rm -f src/*.o $(BWA_LIB); cd ext/safestringlib/ && $(MAKE) clean; - $(MAKE) arch=avx512 EXE=bwa-mem2.avx512bw CXX=$(CXX) all $(CXX) -Wall -O3 src/runsimd.cpp -Iext/safestringlib/include -Lext/safestringlib/ -lsafestring $(STATIC_GCC) -o bwa-mem2 @@ -120,12 +109,8 @@ $(EXE):$(BWA_LIB) $(SAFE_STR_LIB) src/main.o $(BWA_LIB):$(OBJS) ar rcs $(BWA_LIB) $(OBJS) -$(SAFE_STR_LIB): - cd ext/safestringlib/ && $(MAKE) clean && $(MAKE) CC=$(CC) directories libsafestring.a - clean: rm -fr src/*.o $(BWA_LIB) $(EXE) bwa-mem2.sse41 bwa-mem2.sse42 bwa-mem2.avx bwa-mem2.avx2 bwa-mem2.avx512bw - cd ext/safestringlib/ && $(MAKE) clean depend: (LC_ALL=C; export LC_ALL; makedepend -Y -- $(CXXFLAGS) $(CPPFLAGS) -I. -- src/*.cpp)