sage: 9.7 -> 9.8

pkgs/applications/science/math/sage/env-locations.nix

···
     export GRAPHS_DATA_DIR='${graphs}/share/graphs'
     export ELLCURVE_DATA_DIR='${elliptic_curves}/share/ellcurves'
     export POLYTOPE_DATA_DIR='${polytopes_db}/share/reflexive_polytopes'
-    export GAP_ROOT_DIR='${gap}/share/gap'
+    export GAP_LIB_DIR='${gap}/lib/gap'
+    export GAP_SHARE_DIR='${gap}/share/gap'
     export ECLDIR='${maxima.lisp-compiler}/lib/${maxima.lisp-compiler.pname}-${maxima.lisp-compiler.version}/'
     export COMBINATORIAL_DESIGN_DATA_DIR="${combinatorial_designs}/share/combinatorial_designs"
     export CREMONA_MINI_DATA_DIR="${elliptic_curves}/share/cremona"

pkgs/applications/science/math/sage/patches/pari-2.15.1-upgrade-rebased.patch

···
-diff --git a/src/sage/geometry/polyhedron/backend_normaliz.py b/src/sage/geometry/polyhedron/backend_normaliz.py
-index 86b89632a5..ca8a43b248 100644
---- a/src/sage/geometry/polyhedron/backend_normaliz.py
-+++ b/src/sage/geometry/polyhedron/backend_normaliz.py
-@@ -53,7 +53,7 @@ def _number_field_elements_from_algebraics_list_of_lists_of_lists(listss, **kwds
-         1.732050807568878?
-         sage: from sage.geometry.polyhedron.backend_normaliz import _number_field_elements_from_algebraics_list_of_lists_of_lists
-         sage: K, results, hom = _number_field_elements_from_algebraics_list_of_lists_of_lists([[[rt2], [1]], [[rt3]], [[1], []]]); results  # optional - sage.rings.number_field
--        [[[-a^3 + 3*a], [1]], [[-a^2 + 2]], [[1], []]]
-+        [[[-a^3 + 3*a], [1]], [[a^2 - 2]], [[1], []]]
-     """
-     from sage.rings.qqbar import number_field_elements_from_algebraics
-     numbers = []
-diff --git a/src/sage/lfunctions/pari.py b/src/sage/lfunctions/pari.py
-index d2b20f1891..6c31efe239 100644
---- a/src/sage/lfunctions/pari.py
-+++ b/src/sage/lfunctions/pari.py
-@@ -339,7 +339,7 @@ def lfun_eta_quotient(scalings, exponents):
-         0.0374412812685155
- 
-         sage: lfun_eta_quotient([6],[4])
--        [[Vecsmall([7]), [Vecsmall([6]), Vecsmall([4])]], 0, [0, 1], 2, 36, 1]
-+        [[Vecsmall([7]), [Vecsmall([6]), Vecsmall([4]), 0]], 0, [0, 1], 2, 36, 1]
- 
-         sage: lfun_eta_quotient([2,1,4], [5,-2,-2])
-         Traceback (most recent call last):

pkgs/applications/science/math/sage/sage-src.nix

···
   );
 in
 stdenv.mkDerivation rec {
-  version = "9.7";
+  version = "9.8";
   pname = "sage-src";
 
   src = fetchFromGitHub {
     owner = "sagemath";
     repo = "sage";
     rev = version;
-    sha256 = "sha256-MYpCp18wqKwCa+tcJ7He14p1FXDlVm1vubQqQS9g3LY=";
+    sha256 = "sha256-dDbrzJXsOBARYfJz0r7n3LbaoXHnx7Acz6HBa95NV9o=";
   };
 
   # Patches needed because of particularities of nix or the way this is packaged.
···
     # To help debug the transient error in
     # https://trac.sagemath.org/ticket/23087 when it next occurs.
     ./patches/configurationpy-error-verbose.patch
-
-    # https://trac.sagemath.org/ticket/33907
-    (fetchSageDiff {
-      name = "interfaces-expectpy-intermittent.patch";
-      base = "9.8.beta6";
-      rev = "6f5c1c2fc8bcfb5e6555716d05ce70511795ffa1";
-      sha256 = "sha256-z8FQxtrk62MHzPjrUTad+fMAE6XV8GTsLWKgGOM3zBg=";
-    })
   ];
 
   # Patches needed because of package updates. We could just pin the versions of
···
     # adapted from https://trac.sagemath.org/ticket/23712#comment:22
     ./patches/tachyon-renamed-focallength.patch
 
-    # https://trac.sagemath.org/ticket/34118
-    (fetchSageDiff {
-      name = "sympy-1.11-upgrade.patch";
-      base = "9.7";
-      rev = "52815744bde2b682245b6f985a112f7cb8666056";
-      sha256 = "sha256-gv6z6JkQ6S6oCJQNkVgcPVvzlplyvR1nC7pWmcUiSc0=";
-    })
-
-    # https://trac.sagemath.org/ticket/34460
-    (fetchSageDiff {
-      name = "ipywidgets-8-upgrade.patch";
-      base = "9.7";
-      rev = "2816dbacb342398a23bb3099e20c92c8020ab0fa";
-      sha256 = "sha256-tCOsMxXwPkRg3FJGVvTqDzlWdra78UfDY6nci0Nr9GI=";
-    })
-
     # https://trac.sagemath.org/ticket/34391
     (fetchSageDiff {
       name = "gap-4.12-upgrade.patch";
-      base = "9.8.beta2";
-      rev = "eb8cd42feb58963adba67599bf6e311e03424328";
-      sha256 = "sha256-0dKewOZe2n3PqSdxCJt18FkqwTdrD0VA5MXAMiTW8Tw=";
+      base = "9.8.beta7";
+      rev = "dd4a17281adcda74e11f998ef519b6bd0dafb043";
+      sha256 = "sha256-UQT9DO9xd5hh5RucvUkIm+rggPKu8bc1YaSI6LVYH98=";
     })
 
     # https://trac.sagemath.org/ticket/34701
···
       base = "eb8cd42feb58963adba67599bf6e311e03424328"; # TODO: update when #34391 lands
       rev = "90acc7f1c13a80b8aa673469a2668feb9cd4207f";
       sha256 = "sha256-9BhQLFB3wUhiXRQsK9L+I62lSjvTfrqMNi7QUIQvH4U=";
-    })
-
-    # https://trac.sagemath.org/ticket/34537
-    (fetchSageDiff {
-      name = "pari-2.15.1-upgrade.patch";
-      squashed = true;
-      base = "54cd6fe6de52aee5a433e0569e8c370618cb2047"; # 9.8.beta1
-      rev = "1e86aa26790d84bf066eca67f98a60a8aa3d4d3a";
-      sha256 = "sha256-LUgcMqrKXWb72Kxl0n6MV5unLXlQSeG8ncN41F7TRSc=";
-      excludes = ["build/*"
-                  "src/sage/geometry/polyhedron/base_number_field.py"
-                  "src/sage/geometry/polyhedron/backend_normaliz.py"
-                  "src/sage/lfunctions/pari.py"];
-    })
-    # Some files were excluded from the above patch due to
-    # conflicts. The patch below contains rebased versions.
-    ./patches/pari-2.15.1-upgrade-rebased.patch
-
-    # https://trac.sagemath.org/ticket/34668
-    (fetchSageDiff {
-      name = "matplotlib-3.6-upgrade.patch";
-      base = "9.8.beta2";
-      rev = "5501e0de0dca1cff0355326dd42bd8c7e5749568";
-      sha256 = "sha256-ceJkVaecIsZewN8v/3gPQXFbFjv5Akz6zEFg/ToXdek=";
-    })
-
-    # https://trac.sagemath.org/ticket/34693
-    (fetchSageDiff {
-      name = "matplotlib-3.6-docbuilding.patch";
-      base = "9.8.beta4";
-      rev = "64589686c261d33e6b5aff2589bcae8af004bcc6";
-      sha256 = "sha256-j5AMY1TmhP+HBBBYaFZSkABJ5vtwe6iP2LRfGEgSm8Q=";
-    })
-
-    # https://trac.sagemath.org/ticket/34615
-    (fetchSageDiff {
-      name = "sphinx-5.2-upgrade.patch";
-      base = "9.8.beta1";
-      rev = "8f8af65e54d3a9962cfab40f15dc23f4e955b43f";
-      sha256 = "sha256-yhDdyxnXSSkqLcuOPBWSEBc26rk1Od3gLcWW8S2p8bY=";
     })
 
     # temporarily paper over https://github.com/jupyter-widgets/ipywidgets/issues/3669