ocamlPackages.git: 3.3.0 -> 3.3.2; decompress: 1.2.0 -> 1.3.0; duff: 0.3 -> 0.4; and related updates (#116486)

* ocamlPackages.hxd: 0.2.0 -> 0.3.1

ocamlPackages.hxd: disable lwt by default on OCaml 4.06 (syntax error)

* ocamlPackages.duff: 0.3 -> 0.4

* ocamlPackages.decompress: 1.2.0 -> 1.3.0

Keep decompress 1.2.0 around as decompress-1-2 until imagelib supports
decompress 1.3.0: https://github.com/rlepigre/ocaml-imagelib/issues/49

* ocamlPackages.carton*: 0.2.0 -> 0.4.0

* ocamlPackages.git: 3.3.0 -> 3.3.2

pkgs/development/ocaml-modules/carton/default.nix

···
 , ke, duff, decompress, cstruct, optint, bigstringaf, stdlib-shims
 , bigarray-compat, checkseum, logs, psq, fmt
 , result, rresult, fpath, base64, bos, digestif, mmap, alcotest
-, crowbar, alcotest-lwt, lwt, findlib, mirage-flow, cmdliner
+, crowbar, alcotest-lwt, lwt, findlib, mirage-flow, cmdliner, hxd
 }:
 
 buildDunePackage rec {
   pname = "carton";
-  version = "0.2.0";
+  version = "0.4.0";
 
   useDune2 = true;
   minimumOCamlVersion = "4.08";
 
   src = fetchurl {
     url = "https://github.com/mirage/ocaml-git/releases/download/${pname}-v${version}/${pname}-${pname}-v${version}.tbz";
-    sha256 = "0gfns4a9p9540kijccsg52yzyn3jfvi737mb0g71yazyc89dqwhn";
+    sha256 = "777f9692b83cd63570c17527a32c5045818ab9242d923cbbde72fc23d0da0140";
   };
 
   # remove changelogs for mimic and the git* packages
···
     rresult
     fpath
     bos
+    hxd
   ];
   propagatedBuildInputs = [
     ke

pkgs/development/ocaml-modules/decompress/1.2.nix

···
+{ lib, fetchurl, buildDunePackage
+, checkseum, bigarray-compat, optint
+}:
+
+buildDunePackage rec {
+  version = "1.2.0";
+  pname = "decompress";
+
+  minimumOCamlVersion = "4.07";
+
+  useDune2 = true;
+
+  src = fetchurl {
+    url = "https://github.com/mirage/decompress/releases/download/v${version}/decompress-v${version}.tbz";
+    sha256 = "1c3sq9a6kpzl0pj3gmg7w18ssjjl70yv0r3l7qjprcncjx23v62i";
+  };
+
+  propagatedBuildInputs = [ optint bigarray-compat checkseum ];
+  # required hxd version is not available in nixpkgs
+  doCheck = false;
+
+  meta = {
+    description = "Pure OCaml implementation of Zlib";
+    license = lib.licenses.mit;
+    maintainers = [ lib.maintainers.vbgl ];
+    homepage = "https://github.com/mirage/decompress";
+  };
+}

pkgs/development/ocaml-modules/decompress/default.nix

···
 { lib, fetchurl, buildDunePackage
-, checkseum, bigarray-compat, optint
-, bigstringaf, alcotest, hxd, camlzip, base64
+, checkseum, bigarray-compat, optint, cmdliner
+, bigstringaf, alcotest, camlzip, base64, ctypes, fmt
 }:
 
 buildDunePackage rec {
-  version = "1.2.0";
+  version = "1.3.0";
   pname = "decompress";
 
   minimumOCamlVersion = "4.07";
···
 
   src = fetchurl {
     url = "https://github.com/mirage/decompress/releases/download/v${version}/decompress-v${version}.tbz";
-    sha256 = "1c3sq9a6kpzl0pj3gmg7w18ssjjl70yv0r3l7qjprcncjx23v62i";
+    sha256 = "de149896939be13fedec46a4581121d5ab74850a2241d08e6aa8ae4bb18c52c4";
   };
 
+  buildInputs = [ cmdliner ];
   propagatedBuildInputs = [ optint bigarray-compat checkseum ];
-  checkInputs = [ alcotest bigstringaf hxd camlzip base64 ];
+  checkInputs = [ alcotest bigstringaf ctypes fmt camlzip base64 ];
   doCheck = true;
 
   meta = {

pkgs/development/ocaml-modules/duff/default.nix

···
-{ lib, fetchurl, buildDunePackage
+{ lib, fetchurl, buildDunePackage, fetchpatch
 , stdlib-shims, bigarray-compat, fmt
 , alcotest, hxd, crowbar, bigstringaf
 }:
 
 buildDunePackage rec {
   pname = "duff";
-  version = "0.3";
+  version = "0.4";
 
   useDune2 = true;
 
   src = fetchurl {
     url = "https://github.com/mirage/duff/releases/download/v${version}/duff-v${version}.tbz";
-    sha256 = "1lb67yxk93ifj94p1i3swjbnj5xy8j6xzs72bwvq6cffx5xykznm";
+    sha256 = "4795e8344a2c2562e0ef6c44ab742334b5cd807637354715889741b20a461da4";
   };
 
   propagatedBuildInputs = [ stdlib-shims bigarray-compat fmt ];

pkgs/development/ocaml-modules/git/default.nix

···
 
 buildDunePackage rec {
   pname = "git";
-  version = "3.3.0";
+  version = "3.3.2";
 
   minimumOCamlVersion = "4.08";
   useDune2 = true;
 
   src = fetchurl {
     url = "https://github.com/mirage/ocaml-git/releases/download/${version}/git-${version}.tbz";
-    sha256 = "090b67e8f8a02fb52b4d0c7aa445b5ff7353fdb2da00fb37b908f089c6776cd0";
+    sha256 = "01xcjggsb13n6018lp6ic0f6pglfl39qcg126h1k3da19hvpzhrv";
   };
 
   buildInputs = [

pkgs/development/ocaml-modules/git/unix.nix

···
-{ buildDunePackage, fetchpatch, git
+{ buildDunePackage, git
 , mmap, rresult, result, bigstringaf
 , fmt, bos, fpath, uri, digestif, logs, lwt, git-cohttp-unix
 , mirage-clock, mirage-clock-unix, astring, awa, cmdliner
···
   inherit (git) version src minimumOCamlVersion;
 
   useDune2 = true;
-
-  patches = [
-    # https://github.com/mirage/ocaml-git/pull/472
-    (fetchpatch {
-      url = "https://github.com/sternenseemann/ocaml-git/commit/54998331eb9d5c61afe8901fabe0c74c2877f096.patch";
-      sha256 = "12kd45mlfaj4hxh33k9920a22mq1q2sdrin2j41w1angvg00d3my";
-    })
-  ];
 
   buildInputs = [
     awa awa-mirage cmdliner git-cohttp-unix

pkgs/development/ocaml-modules/hxd/default.nix

···
 { lib, buildDunePackage, fetchurl
-, dune-configurator, cmdliner, angstrom
-, rresult, stdlib-shims, fmt, fpath
+, ocaml, dune-configurator, cmdliner
+, lwt, withLwt ? lib.versionAtLeast ocaml.version "4.07"
 }:
 
 buildDunePackage rec {
   pname = "hxd";
-  version = "0.2.0";
+  version = "0.3.1";
 
   useDune2 = true;
 
···
 
   src = fetchurl {
     url = "https://github.com/dinosaure/hxd/releases/download/v${version}/hxd-v${version}.tbz";
-    sha256 = "1lyfrq058cc9x0c0hzsf3hv3ys0h8mxkwin9lldidlnj10izqf1l";
+    sha256 = "1c226c91e17cd329dec0c287bfd20f36302aa533069ff9c6ced32721f96b29bc";
   };
 
+  # ignore yes stderr output due to trapped SIGPIPE
+  postPatch = ''
+    sed -i 's|yes ".\+"|& 2> /dev/null|' test/*.t
+  '';
+
   nativeBuildInputs = [
     dune-configurator
   ];
+
+  propagatedBuildInputs = lib.optional withLwt lwt;
 
   buildInputs = [
     cmdliner
-    angstrom
-    rresult
-    fmt
-    fpath
   ];
 
-  propagatedBuildInputs = [
-    stdlib-shims
-  ];
+  doCheck = true;
 
   meta = with lib; {
     description = "Hexdump in OCaml";

pkgs/top-level/ocaml-packages.nix

···
 
     decompress =  callPackage ../development/ocaml-modules/decompress { };
 
+    decompress-1-2 = callPackage ../development/ocaml-modules/decompress/1.2.nix { };
+
     diet =  callPackage ../development/ocaml-modules/diet { };
 
     digestif =  callPackage ../development/ocaml-modules/digestif { };
···
 
     hxd = callPackage ../development/ocaml-modules/hxd { };
 
-    imagelib = callPackage ../development/ocaml-modules/imagelib { };
+    imagelib = callPackage ../development/ocaml-modules/imagelib {
+      decompress = decompress-1-2;
+    };
 
     inotify = callPackage ../development/ocaml-modules/inotify { };