pyrox.dev
Merge pull request #179421 from K900/bump-pythran
python310Packages.pythran: 0.9.12 -> 0.11.0
+66
-51
pkgs/development/python-modules/pythran/0001-hardcode-path-to-libgomp.patch
+66
-51
pkgs/development/python-modules/pythran/0001-hardcode-path-to-libgomp.patch
···
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From 208fe98f10c580a5a2fb6a8cfdd56de109073925 Mon Sep 17 00:00:00 2001
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From: Frederik Rietdijk <fridh@fridh.nl>
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Date: Sat, 17 Jul 2021 18:36:27 +0200
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Subject: [PATCH] hardcode path to libgomp
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---
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omp/__init__.py | 40 ++++------------------------------------
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1 file changed, 4 insertions(+), 36 deletions(-)
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diff --git a/omp/__init__.py b/omp/__init__.py
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index bddae3063..9ba3678d8 100644
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--- a/omp/__init__.py
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+++ b/omp/__init__.py
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-
@@ -69,43 +69,11 @@ class OpenMP(object):
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def init_not_msvc(self):
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""" Find OpenMP library and try to load if using ctype interface. """
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- # find_library() does not search automatically LD_LIBRARY_PATH
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- paths = os.environ.get('LD_LIBRARY_PATH', '').split(':')
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+ libgomp_path = "@gomp@"
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-
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- for libomp_name in self.get_libomp_names():
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- if cxx is None or sys.platform == 'win32':
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- # Note: Clang supports -print-file-name, but not yet for
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- # clang-cl as of v12.0.0 (April '21)
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- continue
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-
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- cmd = [cxx, '-print-file-name=' + libomp_name]
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- # the subprocess can fail in various ways in that case just give up
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- try:
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- path = os.path.dirname(check_output(cmd).decode().strip())
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- if path:
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- paths.append(path)
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- except (OSError, CalledProcessError):
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- pass
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-
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- # Try to load find libgomp shared library using loader search dirs
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- libgomp_path = find_library("gomp")
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-
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- # Try to use custom paths if lookup failed
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- for path in paths:
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- if libgomp_path:
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- break
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- path = path.strip()
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- if os.path.isdir(path):
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- libgomp_path = find_library(os.path.join(str(path), "libgomp"))
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-
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- if not libgomp_path:
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- raise ImportError("I can't find a shared library for libgomp,"
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- " you may need to install it or adjust the "
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- "LD_LIBRARY_PATH environment variable.")
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- else:
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- # Load the library (shouldn't fail with an absolute path right?)
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- self.libomp = ctypes.CDLL(libgomp_path)
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- self.version = 45
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+ # Load the library (shouldn't fail with an absolute path right?)
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+ self.libomp = ctypes.CDLL(libgomp_path)
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+ self.version = 45
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def __getattr__(self, name):
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"""
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--
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2.32.0
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···
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diff --git a/omp/__init__.py b/omp/__init__.py
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index 3801d1c8c..a93a74d6f 100644
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--- a/omp/__init__.py
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+++ b/omp/__init__.py
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+
@@ -48,72 +48,8 @@ class OpenMP(object):
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return ['omp', 'gomp', 'iomp5']
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def init_not_msvc(self):
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- """ Find OpenMP library and try to load if using ctype interface. """
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- # find_library() does not automatically search LD_LIBRARY_PATH
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- # until Python 3.6+, so we explicitly add it.
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- # LD_LIBRARY_PATH is used on Linux, while macOS uses DYLD_LIBRARY_PATH
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- # and DYLD_FALLBACK_LIBRARY_PATH.
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- env_vars = []
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- if sys.platform == 'darwin':
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- env_vars = ['DYLD_LIBRARY_PATH', 'DYLD_FALLBACK_LIBRARY_PATH']
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- else:
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- env_vars = ['LD_LIBRARY_PATH']
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-
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- paths = []
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- for env_var in env_vars:
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- env_paths = os.environ.get(env_var, '')
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- if env_paths:
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- paths.extend(env_paths.split(os.pathsep))
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-
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-
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- libomp_names = self.get_libomp_names()
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-
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- if cxx is not None:
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- for libomp_name in libomp_names:
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- cmd = [cxx,
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- '-print-file-name=lib{}{}'.format(
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- libomp_name,
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- get_shared_lib_extension())]
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- # The subprocess can fail in various ways, including because it
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- # doesn't support '-print-file-name'. In that case just give up.
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- try:
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- output = check_output(cmd,
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- stderr=DEVNULL)
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- path = os.path.dirname(output.decode().strip())
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- if path:
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- paths.append(path)
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- except (OSError, CalledProcessError):
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- pass
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-
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-
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- for libomp_name in libomp_names:
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- # Try to load find libomp shared library using loader search dirs
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- libomp_path = find_library(libomp_name)
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-
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- # Try to use custom paths if lookup failed
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- if not libomp_path:
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- for path in paths:
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- candidate_path = os.path.join(
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- path,
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- 'lib{}{}'.format(libomp_name,
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- get_shared_lib_extension()))
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- if os.path.isfile(candidate_path):
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- libomp_path = candidate_path
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- break
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-
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- # Load the library
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- if libomp_path:
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- try:
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- self.libomp = ctypes.CDLL(libomp_path)
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- except OSError:
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- raise ImportError("found openMP library '{}' but couldn't load it. "
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- "This may happen if you are cross-compiling.".format(libomp_path))
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- self.version = 45
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- return
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-
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- raise ImportError("I can't find a shared library for libomp, you may need to install it "
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- "or adjust the {} environment variable.".format(env_vars[0]))
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-
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+ self.libomp = ctypes.CDLL("@gomp@")
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+ self.version = 45
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def __getattr__(self, name):
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"""
+3
-18
pkgs/development/python-modules/pythran/default.nix
+3
-18
pkgs/development/python-modules/pythran/default.nix
···
3
, buildPythonPackage
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, fetchFromGitHub
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, openmp
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, pytest-runner
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, ply
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, networkx
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, decorator
···
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, six
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, numpy
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, beniget
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, pytestCheckHook
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, scipy
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, isPy3k
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, substituteAll
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}:
···
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in buildPythonPackage rec {
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pname = "pythran";
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version = "0.9.12";
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src = fetchFromGitHub {
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owner = "serge-sans-paille";
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repo = "pythran";
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rev = version;
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sha256 = "sha256-lQbVq4K/Q8RzlFhE+l3HPCmUGmauXawcKe31kfbUHsI=";
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};
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patches = [
···
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src = ./0001-hardcode-path-to-libgomp.patch;
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gomp = "${if stdenv.cc.isClang then openmp else stdenv.cc.cc.lib}/lib/libgomp${stdenv.hostPlatform.extensions.sharedLibrary}";
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})
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];
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nativeBuildInputs = [
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pytest-runner
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];
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propagatedBuildInputs = [
···
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"pythran.spec"
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];
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checkInputs = [
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pytestCheckHook
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numpy
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scipy
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];
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# Test suite is huge.
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# Also, in the future scipy will rely on it resulting in a circular test dependency
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doCheck = false;
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disabled = !isPy3k;
···
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homepage = "https://github.com/serge-sans-paille/pythran";
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license = lib.licenses.bsd3;
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};
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-
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}
···
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, buildPythonPackage
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, fetchFromGitHub
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, openmp
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, ply
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, networkx
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, decorator
···
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, six
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, numpy
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, beniget
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, isPy3k
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, substituteAll
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}:
···
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in buildPythonPackage rec {
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pname = "pythran";
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version = "0.11.0";
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src = fetchFromGitHub {
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owner = "serge-sans-paille";
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repo = "pythran";
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rev = version;
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sha256 = "sha256-F9gUZOTSuiqvfGoN4yQqwUg9mnCeBntw5eHO7ZnjpzI=";
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};
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patches = [
···
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src = ./0001-hardcode-path-to-libgomp.patch;
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gomp = "${if stdenv.cc.isClang then openmp else stdenv.cc.cc.lib}/lib/libgomp${stdenv.hostPlatform.extensions.sharedLibrary}";
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})
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];
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propagatedBuildInputs = [
···
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"pythran.spec"
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];
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# Test suite is huge and has a circular dependency on scipy.
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doCheck = false;
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disabled = !isPy3k;
···
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homepage = "https://github.com/serge-sans-paille/pythran";
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license = lib.licenses.bsd3;
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};
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}