Merge pull request #112625 from fabaff/bump-pyfakefs

pkgs/development/python-modules/docplex/default.nix

···
 
 buildPythonPackage rec {
   pname = "docplex";
-  version = "2.19.202";
+  version = "2.20.204";
 
   # No source available from official repo
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2b606dc645f99feae67dfc528620dddc773ecef5d59bcaeae68bba601f25162b";
+    sha256 = "sha256-JNjD9UtLHsMGwTuXydZ+L5+pPQ2eobkr26Yt9pgs1qA=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/intelhex/default.nix

···
 { lib
 , buildPythonPackage
 , fetchPypi
-, fetchpatch
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "intelhex";
-  version = "2.2.1";
+  version = "2.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ckqjbxd8gwcg98gfzpn4vq1qxzfvq3rdbrr1hikj1nmw08qb780";
+    sha256 = "sha256-iStzYacZ9JRSN9qMz3VOlRPbMvViiFJ4WuoQjc0lAJM=";
   };
 
-  patches = [
-    # patch the tests to check for the correct version string (2.2.1)
-    (fetchpatch {
-      url = "https://patch-diff.githubusercontent.com/raw/bialix/intelhex/pull/26.patch";
-      sha256 = "1f3f2cyf9ipb9zdifmjs8rqhg028dhy91vabxxn3l7br657s8r2l";
-    })
-  ];
+  checkInputs = [ pytestCheckHook ];
+
+  pytestFlagsArray = [ "intelhex/test.py" ];
+
+  pythonImportsCheck = [ "intelhex" ];
 
   meta = {
     homepage = "https://github.com/bialix/intelhex";

pkgs/development/python-modules/pyfakefs/default.nix

···
-{ lib, stdenv, buildPythonPackage, fetchPypi, pythonOlder, python, pytest, glibcLocales }:
+{ lib
+, stdenv
+, buildPythonPackage
+, fetchPypi
+, pytestCheckHook
+, pythonOlder
+}:
 
 buildPythonPackage rec {
-  version = "4.3.2";
+  version = "4.3.3";
   pname = "pyfakefs";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dfeed4715e2056e3e56b9c5f51a679ce2934897eef926f3d14e5364e43f19070";
+    sha256 = "sha256-/7KrJkoLg69Uii2wxQl5jiCDYd85YBuomK5lzs+1nLs=";
   };
 
   postPatch = ''
···
       --replace "test_rename_dir_to_existing_dir" "notest_rename_dir_to_existing_dir"
   '');
 
-  checkInputs = [ pytest glibcLocales ];
-
-  checkPhase = ''
-    export LC_ALL=en_US.UTF-8
-    ${python.interpreter} -m pyfakefs.tests.all_tests
-    ${python.interpreter} -m pyfakefs.tests.all_tests_without_extra_packages
-    ${python.interpreter} -m pytest pyfakefs/pytest_tests/pytest_plugin_test.py
-  '';
+  checkInputs = [ pytestCheckHook ];
+  # https://github.com/jmcgeheeiv/pyfakefs/issues/581 (OSError: [Errno 9] Bad file descriptor)
+  disabledTests = [ "test_open_existing_pipe" ];
+  pythonImportsCheck = [ "pyfakefs" ];
 
   meta = with lib; {
     description = "Fake file system that mocks the Python file system modules";
-    license     = licenses.asl20;
-    homepage    = "http://pyfakefs.org/";
-    changelog   = "https://github.com/jmcgeheeiv/pyfakefs/blob/master/CHANGES.md";
+    homepage = "http://pyfakefs.org/";
+    changelog = "https://github.com/jmcgeheeiv/pyfakefs/blob/master/CHANGES.md";
+    license = licenses.asl20;
     maintainers = with maintainers; [ gebner ];
   };
 }

pkgs/development/python-modules/qiskit-aer/default.nix

···
 , blas
 , catch2
 , cmake
+, conan
 , cython
 , fmt
 , muparserx
···
 
 buildPythonPackage rec {
   pname = "qiskit-aer";
-  version = "0.7.1";
+  version = "0.7.4";
 
   disabled = pythonOlder "3.6";
 
···
     owner = "Qiskit";
     repo = "qiskit-aer";
     rev = version;
-    sha256 = "07l0wavdknx0y4vy0hwgw24365sg4nb6ygl3lpa098np85qgyn4y";
+    sha256 = "sha256-o6c1ZcGFZ3pwinzMTif1nqF29Wq0Nog1++ZoJGuiKxo=";
   };
 
   nativeBuildInputs = [
···
     pybind11
   ];
 
-  patches = [
-    # TODO: remove in favor of qiskit-aer PR #877 patch once accepted/stable
-    ./remove-conan-install.patch
-  ];
+  postPatch = ''
+    substituteInPlace setup.py --replace "'cmake!=3.17,!=3.17.0'," ""
+  '';
+
+  preBuild = ''
+    export DISABLE_CONAN=1
+  '';
 
   dontUseCmakeConfigure = true;
 

pkgs/development/python-modules/qiskit-aer/remove-conan-install.patch

···
-diff --git a/CMakeLists.txt b/CMakeLists.txt
-index efeacfc..77bd6bd 100755
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -121,7 +121,11 @@ endif()
- # Looking for external libraries
- #
- 
--setup_conan()
-+find_package(muparserx REQUIRED)
-+find_package(nlohmann_json REQUIRED)
-+find_package(spdlog REQUIRED)
-+# for tests only
-+find_package(catch2)
- 
- # If we do not set them with a space CMake fails afterwards if nothing is set for this vars!
- set(AER_LINKER_FLAGS " ")
-@@ -269,16 +273,16 @@ endif()
- set(AER_LIBRARIES
- 	${AER_LIBRARIES}
- 	${BLAS_LIBRARIES}
--	CONAN_PKG::nlohmann_json
-+	nlohmann_json
- 	Threads::Threads
--	CONAN_PKG::spdlog
-+	spdlog
- 	${DL_LIB}
- 	${THRUST_DEPENDANT_LIBS})
- 
- set(AER_COMPILER_DEFINITIONS ${AER_COMPILER_DEFINITIONS} ${CONAN_DEFINES})
- # Cython build is only enabled if building through scikit-build.
- if(SKBUILD) # Terra Addon build
--	set(AER_LIBRARIES ${AER_LIBRARIES} CONAN_PKG::muparserx)
-+	set(AER_LIBRARIES ${AER_LIBRARIES} muparserx)
- 	add_subdirectory(qiskit/providers/aer/pulse/qutip_extra_lite/cy)
- 	add_subdirectory(qiskit/providers/aer/backends/wrappers)
- 	add_subdirectory(src/open_pulse)
-diff --git a/setup.py b/setup.py
-index fd71e9f..1561cc4 100644
---- a/setup.py
-+++ b/setup.py
-@@ -11,12 +11,6 @@ import inspect
- 
- PACKAGE_NAME = os.getenv('QISKIT_AER_PACKAGE_NAME', 'qiskit-aer')
- 
--try:
--    from conans import client
--except ImportError:
--    subprocess.call([sys.executable, '-m', 'pip', 'install', 'conan'])
--    from conans import client
--
- try:
-     from skbuild import setup
- except ImportError:
-@@ -46,8 +40,6 @@ common_requirements = [
- 
- setup_requirements = common_requirements + [
-     'scikit-build',
--    'cmake!=3.17,!=3.17.0',
--    'conan>=1.22.2'
- ]
- 
- requirements = common_requirements + ['qiskit-terra>=0.12.0']

pkgs/development/python-modules/qiskit-aqua/default.nix

···
 
 buildPythonPackage rec {
   pname = "qiskit-aqua";
-  version = "0.8.1";
+  version = "0.8.2";
 
   disabled = pythonOlder "3.6";
 
···
     owner = "Qiskit";
     repo = "qiskit-aqua";
     rev = version;
-    sha256 = "11qyya3vyq50wpzrzzl8v46yx5p72rhpqhybwn47qgazxgg82r1b";
+    sha256 = "sha256-ybf8bXqsVk6quYi0vrfo/Mplk7Nr7tQS7cevXxI9khw=";
   };
 
   # Optional packages: pyscf (see below NOTE) & pytorch. Can install via pip/nix if needed.
···
   # It can also be installed at runtime from the pip wheel.
   # We disable appropriate tests below to allow building without pyscf installed
 
-  # NOTE: we remove cplex b/c we can't build pythonPackages.cplex.
-  # cplex is only distributed in manylinux1 wheel (no source), and Nix python is not manylinux1 compatible
-
   postPatch = ''
-    substituteInPlace setup.py \
-      --replace "pyscf; sys_platform != 'win32'" "" \
-      --replace "cplex; python_version >= '3.6' and python_version < '3.8'" ""
+    substituteInPlace setup.py --replace "docplex==2.15.194" "docplex"
 
     # Add ImportWarning when running qiskit.chemistry (pyscf is a chemistry package) that pyscf is not included
     echo -e "\nimport warnings\ntry: import pyscf;\nexcept ImportError:\n    " \

pkgs/development/python-modules/qiskit-ignis/default.nix

···
 
 buildPythonPackage rec {
   pname = "qiskit-ignis";
-  version = "0.5.1";
+  version = "0.5.2";
 
   disabled = pythonOlder "3.6";
 
···
     owner = "Qiskit";
     repo = "qiskit-ignis";
     rev = version;
-    sha256 = "17kplmi17axcbbgw35dzfr3d5bzfymxfni9sf6v14223c5674p4y";
+    sha256 = "sha256-Kl3tnoamZrCxwoDdu8betG6Lf3CC3D8R2TYiq8Zl3Aw=";
   };
 
   # hacky, fix https://github.com/Qiskit/qiskit-ignis/issues/532.
-  # TODO: remove on qiskit-ignis v0.5.1
+  # TODO: remove on qiskit-ignis v0.5.2
   postPatch = ''
     substituteInPlace qiskit/ignis/mitigation/expval/base_meas_mitigator.py --replace "plt.axes" "'plt.axes'"
   '';

pkgs/development/python-modules/qiskit-terra/default.nix

···
 
 buildPythonPackage rec {
   pname = "qiskit-terra";
-  version = "0.16.1";
+  version = "0.16.4";
 
   disabled = pythonOlder "3.6";
 
···
     owner = "Qiskit";
     repo = pname;
     rev = version;
-    sha256 = "0007glsbrvq9swamvz8r76z9nzh46b388y0ds1dypczxpwlp9xcq";
+    sha256 = "sha256-/rWlPfpAHoMedKG42jfUYt0Ezq7i+9dkyPllavkg4cc=";
   };
 
   nativeBuildInputs = [ cython ];

pkgs/development/python-modules/qiskit/default.nix

···
 buildPythonPackage rec {
   pname = "qiskit";
   # NOTE: This version denotes a specific set of subpackages. See https://qiskit.org/documentation/release_notes.html#version-history
-  version = "0.23.1";
+  version = "0.23.5";
 
   disabled = pythonOlder "3.6";
 
···
     owner = "qiskit";
     repo = "qiskit";
     rev = version;
-    sha256 = "0x4cqx1wqqj7h5g3vdag694qjzsmvhpw25yrlcs70mh5ywdp28x1";
+    sha256 = "sha256-qtMFztAeqNz0FSgQnOOrvAdPcbUCAal7KrVmpNvvBiY=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/solo-python/default.nix

···
-{ lib, buildPythonPackage, fetchFromGitHub, pythonOlder
-, click, ecdsa, fido2, intelhex, pyserial, pyusb, requests}:
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, click
+, cryptography
+, ecdsa
+, fido2
+, intelhex
+, pyserial
+, pyusb
+, requests
+}:
 
  buildPythonPackage rec {
   pname = "solo-python";
-  version = "0.0.26";
+  version = "0.0.27";
   format = "flit";
   disabled = pythonOlder "3.6"; # only python>=3.6 is supported
 
···
     owner = "solokeys";
     repo = pname;
     rev = version;
-    sha256 = "05rwqrhr1as6zqhg63d6wga7l42jm2azbav5w6ih8mx5zbxf61yz";
+    sha256 = "sha256-OCiKa6mnqJGoNCC4KqI+hMw22tzhdN63x9/KujNJqcE=";
   };
 
   # replaced pinned fido, with unrestricted fido version
···
 
   propagatedBuildInputs = [
     click
+    cryptography
     ecdsa
     fido2
     intelhex