r-modules: remedy remaining Hydra failures

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+10
pkgs/development/r-modules/default.nix
··· 436 436 "PBSadmb" 437 437 "PBSmodelling" 438 438 "PCPS" 439 + "PKgraph" 439 440 "PopGenReport" 440 441 "PredictABEL" 441 442 "PrevMap" ··· 664 665 "babel" # requires edgeR 665 666 "BACA" # requires RDAVIDWebService 666 667 "BcDiag" # requires fabia 668 + "beadarrayMSV" # requires Biobase, geneplotter, andlimma 667 669 "bdvis" # requres taxize 668 670 "beadarrayFilter" # requires beadarray 669 671 "bigGP" # requires MPI running. HELP WANTED! ··· 679 681 "CARrampsOcl" # depends on OpenCL 680 682 "CHAT" # requires DNAcopy 681 683 "ChemoSpec" # depends on broken speaq 684 + "Crossover" # fails self-test 682 685 "classGraph" # requires graph, and Rgraphviz 683 686 "clpAPI" # requires clp 684 687 "compendiumdb" # requires Biobase ··· 733 736 "gmatrix" # depends on proprietary cudatoolkit 734 737 "GOGANPA" # requires WGCNA 735 738 "gputools" # depends on proprietary cudatoolkit 739 + "gMCP" # fails self-test 736 740 "gRain" # requires gRbase 737 741 "gRapHD" # requires graph 738 742 "gRbase" # requires RBGL, and graph ··· 805 809 "optBiomarker" # requires rpanel 806 810 "ora" # requires ROracle 807 811 "orQA" # requires genefilter 812 + "pRF" # requires multtest 808 813 "PBSmapping" # fails its test suite for unclear reasons 814 + "PBSddesolve" # fails its test suite for unclear reasons 809 815 "PairViz" # requires graph 810 816 "PANDA" # requires GO.db 811 817 "ParDNAcopy" # requires DNAcopy ··· 874 880 "rpanel" # I could not make Tcl to recognize BWidget. HELP WANTED! 875 881 "RQuantLib" # requires QuantLib 876 882 "RSAP" # requires SAPNWRFCSDK 883 + "rgp" # fails self-test 884 + "rgpui" # depends on broken rgp 877 885 "RSeed" # requires RBGL, and graph 878 886 "rsig" # requires survcomp 879 887 "RSNPset" # requires qvalue ··· 909 917 "spocc" # requires leafletR 910 918 "SQDA" # requires limma 911 919 "Statomica" # requires Biobase, multtest 920 + "stagePop" # depends on broken PBSddesolve 921 + "SeqGrapheR" # depends on Biostrings 912 922 "stpp" # requires spatstat 913 923 "structSSI" # requires multtest 914 924 "strum" # requires Rgraphviz