pyrox.dev
Merge pull request #123042 from fabaff/fix-dendropy
python3Packages.dendropy: 4.4.0 -> 4.5.1
authored by Fabian Affolter and committed by GitHub a2c3ea5b fc63be7a
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pkgs/development/python-modules/dendropy/default.nix
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pkgs/development/python-modules/dendropy/default.nix
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{ lib
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, pkgs
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, buildPythonPackage
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, fetchFromGitHub
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, pytest
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, pytestCheckHook
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}:
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buildPythonPackage rec {
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pname = "DendroPy";
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version = "4.4.0";
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pname = "dendropy";
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version = "4.5.1";
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# tests are incorrectly packaged in pypi version
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src = fetchFromGitHub {
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owner = "jeetsukumaran";
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repo = pname;
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rev = "v${version}";
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sha256 = "097hfyv2kaf4x92i4rjx0paw2cncxap48qivv8zxng4z7nhid0x9";
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sha256 = "sha256-FP0+fJkkFtSysPxoHXjyMgF8pPin7aRyzmHe9bH8LlM=";
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};
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preCheck = ''
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# Needed for unicode python tests
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export LC_ALL="en_US.UTF-8"
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cd tests # to find the 'support' module
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'';
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checkInputs = [
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pytestCheckHook
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];
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checkInputs = [ pytest pkgs.glibcLocales ];
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disabledTests = [
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# FileNotFoundError: [Errno 2] No such file or directory: 'paup'
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"test_basic_split_count_with_incorrect_rootings_raises_error"
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"test_basic_split_count_with_incorrect_weight_treatment_raises_error"
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"test_basic_split_counting_under_different_rootings"
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"test_group1"
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# AssertionError: 6 != 5
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"test_by_num_lineages"
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];
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checkPhase = ''
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pytest -k 'not test_dataio_nexml_reader_tree_list and not test_pscores_with'
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'';
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pythonImportsCheck = [ "dendropy" ];
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meta = {
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meta = with lib; {
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description = "Python library for phylogenetic computing";
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homepage = "https://dendropy.org/";
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description = "A Python library for phylogenetic computing";
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maintainers = with lib.maintainers; [ unode ];
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license = lib.licenses.bsd3;
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license = licenses.bsd3;
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maintainers = with maintainers; [ unode ];
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};
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}