pyrox.dev
R: add various features
* Ensure that R can link blas, liblapack, and libgfortran at run-time.
* Ensure that R can run the Tcl/Tk interpreter.
* Add Java support.
* Install texinfo and PDF documentation.
+54
-3
pkgs/applications/science/math/R/default.nix
+54
-3
pkgs/applications/science/math/R/default.nix
···
1
1
{ stdenv, fetchurl, blas, bzip2, gfortran, liblapack, libX11, libXmu, libXt
2
2
, libjpeg, libpng, libtiff, ncurses, pango, pcre, perl, readline, tcl
3
-
, texLive, tk, xz, zlib, less, texinfo, graphviz
3
+
, texLive, tk, xz, zlib, less, texinfo, graphviz, icu, pkgconfig, bison
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+
, imake, which, jdk, atlas
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}:
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stdenv.mkDerivation rec {
···
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buildInputs = [ blas bzip2 gfortran liblapack libX11 libXmu libXt
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libXt libjpeg libpng libtiff ncurses pango pcre perl readline tcl
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-
texLive tk xz zlib less texinfo graphviz ];
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+
texLive tk xz zlib less texinfo graphviz icu pkgconfig bison imake
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+
which jdk atlas
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+
];
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+
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+
patches = [ ./no-usr-local-search-paths.patch ];
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+
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+
preConfigure = ''
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+
configureFlagsArray=(
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+
--disable-lto
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+
--with-blas="-L${atlas}/lib -lf77blas -latlas"
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+
--with-lapack="-L${liblapack}/lib -llapack"
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+
--with-readline
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+
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
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+
--with-cairo
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+
--with-libpng
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+
--with-jpeglib
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+
--with-libtiff
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+
--with-system-zlib
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+
--with-system-bzlib
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+
--with-system-pcre
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+
--with-system-xz
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+
--with-ICU
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+
R_SHELL="${stdenv.shell}"
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+
JAVA_HOME="${jdk}"
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+
LDFLAGS="-L${gfortran.gcc}/lib"
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+
)
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+
echo "TCLLIBPATH=${tk}/lib" >>etc/Renviron.in
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+
'';
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+
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+
installTargets = [ "install" "install-info" "install-pdf" ];
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+
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+
doCheck = true;
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enableParallelBuilding = true;
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meta = {
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-
description = "a free software environment for statistical computing and graphics";
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homepage = "http://www.r-project.org/";
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+
description = "a free software environment for statistical computing and graphics";
23
55
license = stdenv.lib.licenses.gpl2Plus;
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+
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+
longDescription = ''
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+
GNU R is a language and environment for statistical computing and
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+
graphics that provides a wide variety of statistical (linear and
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+
nonlinear modelling, classical statistical tests, time-series
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+
analysis, classification, clustering, ...) and graphical
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+
techniques, and is highly extensible. One of R's strengths is the
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+
ease with which well-designed publication-quality plots can be
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+
produced, including mathematical symbols and formulae where
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+
needed. R is an integrated suite of software facilities for data
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+
manipulation, calculation and graphical display. It includes an
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+
effective data handling and storage facility, a suite of operators
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+
for calculations on arrays, in particular matrices, a large,
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+
coherent, integrated collection of intermediate tools for data
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+
analysis, graphical facilities for data analysis and display
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+
either on-screen or on hardcopy, and a well-developed, simple and
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effective programming language which includes conditionals, loops,
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user-defined recursive functions and input and output facilities.
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+
'';
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platforms = stdenv.lib.platforms.linux;
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maintainers = [ stdenv.lib.maintainers.simons ];
+24
pkgs/applications/science/math/R/no-usr-local-search-paths.patch
+24
pkgs/applications/science/math/R/no-usr-local-search-paths.patch
···
1
+
diff -ubr R-3.0.1-orig/configure R-3.0.1/configure
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+
--- R-3.0.1-orig/configure 2013-07-04 10:46:42.336133947 +0200
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+
+++ R-3.0.1/configure 2013-07-04 10:46:17.181919960 +0200
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+
@@ -3800,13 +3800,13 @@
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+
: ${LIBnn=$libnn}
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+
## We provide these defaults so that headers and libraries in
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## '/usr/local' are found (by the native tools, mostly).
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+
-if test -f "/sw/etc/fink.conf"; then
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+
- : ${CPPFLAGS="-I/sw/include -I/usr/local/include"}
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+
- : ${LDFLAGS="-L/sw/lib -L/usr/local/lib"}
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+
-else
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+
- : ${CPPFLAGS="-I/usr/local/include"}
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+
- : ${LDFLAGS="-L/usr/local/${LIBnn}"}
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+
-fi
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+
+# if test -f "/sw/etc/fink.conf"; then
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+
+# : ${CPPFLAGS="-I/sw/include -I/usr/local/include"}
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+
+# : ${LDFLAGS="-L/sw/lib -L/usr/local/lib"}
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+
+# else
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+
+# : ${CPPFLAGS="-I/usr/local/include"}
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+
+# : ${LDFLAGS="-L/usr/local/${LIBnn}"}
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+
+# fi
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+
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+
## take care not to override the command-line setting
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+
if test "${libdir}" = '${exec_prefix}/lib'; then