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nimPackages.hts: 0.3.4 -> 0.3.23, rename from hts-nim
Emery Hemingway
2 years ago
9025a583
714fb068
+24
-17
4 changed files
expand all
collapse all
unified
split
pkgs
applications
science
biology
mosdepth
default.nix
development
nim-packages
hts
default.nix
hts-nim
default.nix
top-level
nim-packages.nix
+2
-2
pkgs/applications/science/biology/mosdepth/default.nix
···
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{lib, nimPackages, fetchFromGitHub, pcre}:
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+
{ lib, nimPackages, fetchFromGitHub, docopt, hts, pcre }:
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nimPackages.buildNimPackage rec {
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pname = "mosdepth";
···
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sha256 = "sha256-7uteYTCbAaXedPqk0WtHpqTfUWH/+rRW8aSlFixkEko=";
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};
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buildInputs = with nimPackages; [ docopt hts-nim pcre ];
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+
buildInputs = [ docopt hts pcre ];
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meta = with lib; {
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description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing";
-14
pkgs/development/nim-packages/hts-nim/default.nix
···
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{ buildNimPackage, fetchFromGitHub, htslib }:
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buildNimPackage rec {
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pname = "hts-nim";
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version = "0.3.4";
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src = fetchFromGitHub {
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owner = "brentp";
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repo = pname;
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rev = "v${version}";
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sha256 = "0670phk1bq3l9j2zaa8i5wcpc5dyfrc0l2a6c21g0l2mmdczffa7";
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-
};
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propagatedBuildInputs = [ htslib ];
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doCheck = false;
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}
+21
pkgs/development/nim-packages/hts/default.nix
···
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+
{ lib, buildNimPackage, fetchFromGitHub, htslib }:
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+
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buildNimPackage (final: prev: {
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pname = "hts";
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version = "0.3.23";
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src = fetchFromGitHub {
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owner = "brentp";
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repo = "hts-nim";
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rev = "v${final.version}";
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hash = "sha256-o27yOtzW4hk8dpicqjW4D8zxqXHdxcz+e84PyK+yBq8=";
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};
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+
propagatedBuildInputs = [ htslib ];
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+
nimFlags = [ "--mm:refc" ];
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doCheck = false;
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meta = final.src.meta // {
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description = "Nim wrapper for htslib for parsing genomics data files";
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homepage = "https://brentp.github.io/hts-nim/";
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license = [ lib.licenses.mit ];
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maintainers = with lib.maintainers; [ ehmry ];
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};
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})
+1
-1
pkgs/top-level/nim-packages.nix
···
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hashlib = callPackage ../development/nim-packages/hashlib { };
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-
hts-nim = callPackage ../development/nim-packages/hts-nim { };
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+
hts = callPackage ../development/nim-packages/hts { };
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illwill = callPackage ../development/nim-packages/illwill { };
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