lol
0
fork

Configure Feed

Select the types of activity you want to include in your feed.

Merge staging-next into staging

authored by

github-actions[bot] and committed by
GitHub
8ddea08a 30cb0d70

+3544 -3045
+8
nixos/doc/manual/from_md/release-notes/rl-2111.section.xml
··· 441 441 <literal>code-server</literal>-module now available 442 442 </para> 443 443 </listitem> 444 + <listitem> 445 + <para> 446 + <link xlink:href="https://github.com/xmrig/xmrig">xmrig</link>, 447 + a high performance, open source, cross platform RandomX, 448 + KawPow, CryptoNight and AstroBWT unified CPU/GPU miner and 449 + RandomX benchmark. 450 + </para> 451 + </listitem> 444 452 </itemizedlist> 445 453 </section> 446 454 <section xml:id="sec-release-21.11-incompatibilities">
+2
nixos/doc/manual/release-notes/rl-2111.section.md
··· 131 131 132 132 - `code-server`-module now available 133 133 134 + - [xmrig](https://github.com/xmrig/xmrig), a high performance, open source, cross platform RandomX, KawPow, CryptoNight and AstroBWT unified CPU/GPU miner and RandomX benchmark. 135 + 134 136 ## Backward Incompatibilities {#sec-release-21.11-incompatibilities} 135 137 136 138 - The NixOS VM test framework, `pkgs.nixosTest`/`make-test-python.nix`, now requires detaching commands such as `succeed("foo &")` and `succeed("foo | xclip -i")` to close stdout.
+71
nixos/modules/services/misc/xmrig.nix
··· 1 + { config, pkgs, lib, ... }: 2 + 3 + 4 + let 5 + cfg = config.services.xmrig; 6 + 7 + json = pkgs.formats.json { }; 8 + configFile = json.generate "config.json" cfg.settings; 9 + in 10 + 11 + with lib; 12 + 13 + { 14 + options = { 15 + services.xmrig = { 16 + enable = mkEnableOption "XMRig Mining Software"; 17 + 18 + package = mkOption { 19 + type = types.package; 20 + default = pkgs.xmrig; 21 + example = literalExpression "pkgs.xmrig-mo"; 22 + description = "XMRig package to use."; 23 + }; 24 + 25 + settings = mkOption { 26 + default = { }; 27 + type = json.type; 28 + example = literalExpression '' 29 + { 30 + autosave = true; 31 + cpu = true; 32 + opencl = false; 33 + cuda = false; 34 + pools = [ 35 + { 36 + url = "pool.supportxmr.com:443"; 37 + user = "your-wallet"; 38 + keepalive = true; 39 + tls = true; 40 + } 41 + ] 42 + } 43 + ''; 44 + description = '' 45 + XMRig configuration. Refer to 46 + <link xlink:href="https://xmrig.com/docs/miner/config"/> 47 + for details on supported values. 48 + ''; 49 + }; 50 + }; 51 + }; 52 + 53 + config = mkIf cfg.enable { 54 + systemd.services.xmrig = { 55 + wantedBy = [ "multi-user.target" ]; 56 + after = [ "network.target" ]; 57 + description = "XMRig Mining Software Service"; 58 + serviceConfig = { 59 + ExecStartPre = "${cfg.package}/bin/xmrig --config=${configFile} --dry-run"; 60 + ExecStart = "${cfg.package}/bin/xmrig --config=${configFile}"; 61 + DynamicUser = true; 62 + }; 63 + }; 64 + }; 65 + 66 + meta = with lib; { 67 + description = "XMRig Mining Software Service"; 68 + license = licenses.gpl3Only; 69 + maintainers = with maintainers; [ ratsclub ]; 70 + }; 71 + }
+3 -3
nixos/tests/plasma5.nix
··· 42 42 machine.succeed("getfacl -p /dev/snd/timer | grep -q ${user.name}") 43 43 44 44 with subtest("Run Dolphin"): 45 - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 dolphin &'") 45 + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 dolphin >&2 &'") 46 46 machine.wait_for_window(" Dolphin") 47 47 48 48 with subtest("Run Konsole"): 49 - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 konsole &'") 49 + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 konsole >&2 &'") 50 50 machine.wait_for_window("Konsole") 51 51 52 52 with subtest("Run systemsettings"): 53 - machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 systemsettings5 &'") 53 + machine.execute("su - ${user.name} -c 'DISPLAY=:0.0 systemsettings5 >&2 &'") 54 54 machine.wait_for_window("Settings") 55 55 56 56 with subtest("Wait to get a screenshot"):
+114
pkgs/applications/audio/jconvolver/default.nix
··· 1 + { lib, stdenv, fetchurl, flac, unzip, fftwFloat, hybridreverb2, libclthreads, libjack2, libsndfile, zita-convolver }: 2 + 3 + stdenv.mkDerivation rec { 4 + pname = "jconvolver"; 5 + version = "1.1.0"; 6 + 7 + src = fetchurl { 8 + url = "https://kokkinizita.linuxaudio.org/linuxaudio/downloads/${pname}-${version}.tar.bz2"; 9 + sha256 = "03fq1rk5wyn32w0aaa9vqijnw9x9i0i7sv4nhsf949bk5lvi2nmc"; 10 + }; 11 + 12 + reverbs = fetchurl { 13 + url = "http://kokkinizita.linuxaudio.org/linuxaudio/downloads/jconvolver-reverbs.tar.bz2"; 14 + sha256 = "127aj211xfqp37c94d9cn0mmwzbjkj3f6br5gr67ckqirvsdkndi"; 15 + }; 16 + weird = fetchurl { 17 + url = "http://kokkinizita.linuxaudio.org/linuxaudio/downloads/weird.wav"; 18 + sha256 = "14xchdikx5k8zlgwglrqi168vki3n3rwhn73dkbj5qwh2ndrlyrc"; 19 + }; 20 + 21 + porihall-sf = fetchurl { 22 + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/sndfld.zip"; 23 + sha256 = "0z1kmdin3vcy6wmnym9jlfh8hwvci9404hff02cb98iw2slxid42"; 24 + }; 25 + porihall-bd = fetchurl { 26 + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/bin_dfeq.zip"; 27 + sha256 = "03m2brfxs851sag4z7kd71h6anv6hj34zcambwib0v1byg8vyplp"; 28 + }; 29 + porihall-c = fetchurl { 30 + url = "http://legacy.spa.aalto.fi/projects/poririrs/wavs/cardioid.zip"; 31 + sha256 = "0ilbfvb2kvg5z6zi0mf2k4n0vgpir3iz5fa53xw92c07fs0cx36w"; 32 + }; 33 + 34 + spacenet-hm2 = fetchurl { 35 + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/hamilton-mausoleum/b-format/hm2_000_bformat_48k.wav"; 36 + sha256 = "1icnzfzq3mccbmnvmvh22mw8g8dci4i9h7lgrpmycj58v3gnb1p5"; 37 + }; 38 + spacenet-lyd3 = fetchurl { 39 + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/st-andrews-church/b-format/lyd3_000_bformat_48k.wav"; 40 + sha256 = "144cc0i91q5i72lwbxydx3nvxrd12j7clxjhwa2b8sf69ypz58wd"; 41 + }; 42 + spacenet-mh3 = fetchurl { 43 + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/maes-howe/b-format/mh3_000_bformat_48k.wav"; 44 + sha256 = "1c6v9jlm88l1sx2383yivycdrs9jqfsfx8cpbkjg19v2x1dfns0b"; 45 + }; 46 + spacenet-minster1 = fetchurl { 47 + url = "https://webfiles.york.ac.uk/OPENAIR/IRs/york-minster/b-format/minster1_bformat_48k.wav"; 48 + sha256 = "1cs26pawjkv6qvwhfirfvzh21xvnmx8yh7f4xcr79cxv5c6hhnrw"; 49 + }; 50 + 51 + nativeBuildInputs = [ flac unzip ]; 52 + 53 + buildInputs = [ 54 + fftwFloat 55 + hybridreverb2 56 + libclthreads 57 + libjack2 58 + libsndfile 59 + zita-convolver 60 + ]; 61 + 62 + outputs = [ "bin" "out" "doc" ]; 63 + 64 + preConfigure = '' 65 + cd source 66 + ''; 67 + 68 + makeFlags = [ 69 + "PREFIX=$(bin)" 70 + ]; 71 + 72 + postInstall = '' 73 + mkdir -p $doc/share/doc/jconvolver 74 + cp -r ../[A-Z]* $doc/share/doc/jconvolver/ 75 + 76 + mkdir -p $out/share/jconvolver 77 + cp -r ../config-files $out/share/jconvolver/ 78 + cd $out/share/jconvolver 79 + for conf in */*.conf */*/*.conf; do 80 + if grep -q /audio/ $conf; then 81 + substituteInPlace $conf --replace /audio/ $out/share/jconvolver/ 82 + fi 83 + done 84 + substituteInPlace config-files/xtalk-cancel/EYCv2-44.conf --replace /cd "#/cd" 85 + ln -s ${weird} config-files/weird.wav 86 + 87 + tar xf ${reverbs} 88 + cd reverbs 89 + unzip -d porihall ${porihall-sf} s1_r4_sf.wav 90 + unzip -d porihall ${porihall-bd} s1_r3_bd.wav 91 + unzip -d porihall ${porihall-c} s1_r3_c.wav 92 + 93 + mkdir spacenet 94 + ln -s ${spacenet-hm2} spacenet/HM2_000_WXYZ_48k.amb 95 + ln -s ${spacenet-lyd3} spacenet/Lyd3_000_WXYZ_48k.amb 96 + ln -s ${spacenet-mh3} spacenet/MH3_000_WXYZ_48k.amb 97 + ln -s ${spacenet-minster1} spacenet/Minster1_000_WXYZ_48k.amb 98 + 99 + mkdir -p hybridreverb-database/large_concert_hall/music/8m 100 + for flac in ${hybridreverb2}/share/HybridReverb2/RIR_Database/large_concert_hall/music/8m/*.flac; do 101 + flac --output-prefix=hybridreverb-database/large_concert_hall/music/8m/ -d $flac 102 + done 103 + ''; 104 + 105 + enableParallelBuilding = true; 106 + 107 + meta = with lib; { 108 + description = "A JACK client and audio file convolver with reverb samples"; 109 + homepage = "https://kokkinizita.linuxaudio.org/linuxaudio/"; 110 + license = licenses.gpl2Plus; 111 + maintainers = with maintainers; [ orivej ]; 112 + platforms = platforms.linux; 113 + }; 114 + }
+3 -3
pkgs/applications/audio/mixxx/default.nix
··· 53 53 54 54 mkDerivation rec { 55 55 pname = "mixxx"; 56 - version = "2.3.0"; 56 + version = "2.3.1"; 57 57 58 58 src = fetchFromGitHub { 59 59 owner = "mixxxdj"; 60 60 repo = "mixxx"; 61 61 rev = version; 62 - sha256 = "18sx4l3zzbn5142xfv5bp0crdd615a5728fkprqacnx3zpa144x6"; 62 + sha256 = "sha256-6M1qaRyRYWTIKqclewuD+RUVDdxVbBHcfpw2qYgO6BA="; 63 63 }; 64 64 65 65 nativeBuildInputs = [ cmake pkg-config ]; ··· 117 117 118 118 # mixxx installs udev rules to DATADIR instead of SYSCONFDIR 119 119 # let's disable this and install udev rules manually via postInstall 120 - # see https://github.com/mixxxdj/mixxx/blob/2.3.0/CMakeLists.txt#L1381-L1392 120 + # see https://github.com/mixxxdj/mixxx/blob/2.3.1/CMakeLists.txt#L1381-L1392 121 121 cmakeFlags = [ 122 122 "-DINSTALL_USER_UDEV_RULES=OFF" 123 123 ];
+5
pkgs/applications/audio/tagutil/default.nix
··· 30 30 zlib 31 31 ]; 32 32 33 + prePatch = '' 34 + substituteInPlace CMakeLists.txt \ 35 + --replace "-o aslr" "" 36 + ''; 37 + 33 38 meta = with lib; { 34 39 description = "Scriptable music files tags tool and editor"; 35 40 homepage = "https://github.com/kaworu/tagutil";
+2 -2
pkgs/applications/editors/rstudio/default.nix
··· 168 168 ''; 169 169 170 170 postInstall = '' 171 - mkdir -p $out/share/icons $out/bin 172 - ln $out/lib/rstudio/rstudio.png $out/share/icons 171 + mkdir -p $out/share/icons/hicolor/48x48/apps $out/bin 172 + ln $out/lib/rstudio/rstudio.png $out/share/icons/hicolor/48x48/apps 173 173 174 174 for f in {diagnostics,rpostback,rstudio}; do 175 175 ln -s $out/lib/rstudio/bin/$f $out/bin
+1
pkgs/applications/networking/browsers/yandex-browser/default.nix
··· 131 131 license = licenses.unfree; 132 132 maintainers = with maintainers; [ dan4ik605743 ]; 133 133 platforms = [ "x86_64-linux" ]; 134 + broken = true; 134 135 }; 135 136 }
+6 -4
pkgs/applications/networking/cluster/nerdctl/default.nix
··· 10 10 11 11 buildGoModule rec { 12 12 pname = "nerdctl"; 13 - version = "0.12.1"; 13 + version = "0.13.0"; 14 14 15 15 src = fetchFromGitHub { 16 16 owner = "containerd"; 17 17 repo = pname; 18 18 rev = "v${version}"; 19 - sha256 = "sha256-FRu1h6DT43rPaa9dcgz83w9K+xtzJgB4l/eTu+Fbb+c="; 19 + sha256 = "sha256-uyLY2yH/6J0rtra0brBATadPqrNyyuCcaGfOrng9h4Y="; 20 20 }; 21 21 22 - vendorSha256 = "sha256-QFACe1/5MVbXKTknEyqjWclEQgJSZAJ/QljhLq/tWe4="; 22 + vendorSha256 = "sha256-r7xzvntTIJocdYMQpFXunI2XV65eRG+piEEzS5N2xsY="; 23 23 24 24 nativeBuildInputs = [ makeWrapper installShellFiles ]; 25 25 ··· 35 35 --prefix CNI_PATH : "${cni-plugins}/bin" 36 36 37 37 installShellCompletion --cmd nerdctl \ 38 - --bash <($out/bin/nerdctl completion bash) 38 + --bash <($out/bin/nerdctl completion bash) \ 39 + --fish <($out/bin/nerdctl completion fish) \ 40 + --zsh <($out/bin/nerdctl completion zsh) 39 41 ''; 40 42 41 43 doInstallCheck = true;
+3 -3
pkgs/applications/networking/cluster/terraform-providers/lxd/default.nix
··· 2 2 3 3 buildGoModule rec { 4 4 pname = "terraform-provider-lxd"; 5 - version = "1.5.0"; 5 + version = "1.6.0"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "sl1pm4t"; 9 9 repo = "terraform-provider-lxd"; 10 10 rev = "v${version}"; 11 - sha256 = "sha256-ikI8LQ6qawdeUSb1Ee03H409DQw2M4QtsIxAESxXNRI="; 11 + sha256 = "sha256-fl9sYoyrVV6LvnIrnyAXy18QLLazQajjcLO1JWsqAR4="; 12 12 }; 13 13 14 - vendorSha256 = "sha256-IjpC7bFodqdrqVUEQdZBc6N8py5+t2kRYvcQiPr7CHc="; 14 + vendorSha256 = "sha256-ervfG/BAaF4M+BXsp0eCDM6nPWQOS3pthClhArsUoYc="; 15 15 16 16 doCheck = false; 17 17
+2 -2
pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
··· 58 58 }); 59 59 in stdenv.mkDerivation rec { 60 60 pname = "signal-desktop"; 61 - version = "5.22.0"; # Please backport all updates to the stable channel. 61 + version = "5.23.0"; # Please backport all updates to the stable channel. 62 62 # All releases have a limited lifetime and "expire" 90 days after the release. 63 63 # When releases "expire" the application becomes unusable until an update is 64 64 # applied. The expiration date for the current release can be extracted with: ··· 68 68 69 69 src = fetchurl { 70 70 url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; 71 - sha256 = "1y88qw57wk187fjb05zqvagv4pamc8171xwvznqb2k0vclsg82j8"; 71 + sha256 = "0jan203zbrkb9scfdldwnvyvk4657a3pn0ws51xf53jhvvywhpg0"; 72 72 }; 73 73 74 74 nativeBuildInputs = [
+2 -2
pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
··· 66 66 in 67 67 mkDerivation rec { 68 68 pname = "telegram-desktop"; 69 - version = "3.1.9"; 69 + version = "3.1.11"; 70 70 # Note: Update via pkgs/applications/networking/instant-messengers/telegram/tdesktop/update.py 71 71 72 72 # Telegram-Desktop with submodules ··· 75 75 repo = "tdesktop"; 76 76 rev = "v${version}"; 77 77 fetchSubmodules = true; 78 - sha256 = "1nmakl9jxmw3k8gka56cyywbjwv06a5983dy6h9jhkkq950fn33s"; 78 + sha256 = "0hpcsraw3gx37wk3r88q51qf68ny0kb3kd6slnklwf22d1jqr3fn"; 79 79 }; 80 80 81 81 postPatch = ''
+3 -3
pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix
··· 8 8 9 9 stdenv.mkDerivation { 10 10 pname = "tg_owt"; 11 - version = "unstable-2021-09-15"; 11 + version = "unstable-2021-10-21"; 12 12 13 13 src = fetchFromGitHub { 14 14 owner = "desktop-app"; 15 15 repo = "tg_owt"; 16 - rev = "575fb17d2853c43329e45f6693370f5e41668055"; 17 - sha256 = "17lhy5g4apdakspv75zm070k7003crf1i80m8wy8f631s86v30md"; 16 + rev = "d578c760dc6f1ae5f0f3bb5317b0b2ed04b79138"; 17 + sha256 = "12lr50nma3j9df55sxi6p48yhn9yxrwzz5yrx7r29p8p4fv1c75w"; 18 18 fetchSubmodules = true; 19 19 }; 20 20
+2 -3
pkgs/applications/science/math/R/default.nix
··· 14 14 15 15 stdenv.mkDerivation rec { 16 16 pname = "R"; 17 - version = "4.1.1"; 17 + version = "4.1.2"; 18 18 19 19 src = fetchurl { 20 20 url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; 21 - sha256 = "0r6kpnxjbvb7gdfg4m1z8zc6xd225vw81wrnf05ps9ajawk06pji"; 21 + sha256 = "sha256-IDYiXp9yB9TOCX5Ulyrs2qi0DX2ZEc0mSR+sWg+rOK8="; 22 22 }; 23 23 24 24 dontUseImakeConfigure = true; ··· 31 31 32 32 patches = [ 33 33 ./no-usr-local-search-paths.patch 34 - ./skip-check-for-aarch64.patch 35 34 ]; 36 35 37 36 prePatch = lib.optionalString stdenv.isDarwin ''
-11
pkgs/applications/science/math/R/skip-check-for-aarch64.patch
··· 1 - diff -ur a/src/library/stats/man/nls.Rd b/src/library/stats/man/nls.Rd 2 - --- a/src/library/stats/man/nls.Rd 2021-05-21 19:15:02.000000000 -0300 3 - +++ b/src/library/stats/man/nls.Rd 2021-08-12 12:39:00.094758280 -0300 4 - @@ -287,7 +287,7 @@ 5 - options(digits = 10) # more accuracy for 'trace' 6 - ## IGNORE_RDIFF_BEGIN 7 - try(nlm1 <- update(nlmod, control = list(tol = 1e-7))) # where central diff. work here: 8 - - (nlm2 <- update(nlmod, control = list(tol = 8e-8, nDcentral=TRUE), trace=TRUE)) 9 - + (nlm2 <- update(nlmod, control = list(tol = 8e-8, nDcentral=TRUE, warnOnly=TRUE), trace=TRUE)) 10 - ## --> convergence tolerance 4.997e-8 (in 11 iter.) 11 - ## IGNORE_RDIFF_END
+6 -2
pkgs/applications/science/math/cemu/default.nix
··· 1 1 { fetchFromGitHub 2 2 , lib 3 - , mkDerivation 4 3 , SDL2 5 4 , libGL 6 5 , libarchive ··· 10 9 , git 11 10 , libpng_apng 12 11 , pkg-config 12 + , wrapQtAppsHook 13 + , stdenv 13 14 }: 14 15 15 - mkDerivation rec { 16 + stdenv.mkDerivation rec { 16 17 pname = "CEmu"; 17 18 version = "1.3"; 18 19 src = fetchFromGitHub { ··· 26 27 nativeBuildInputs = [ 27 28 qmake 28 29 git 30 + wrapQtAppsHook 29 31 pkg-config 30 32 ]; 31 33 ··· 40 42 41 43 qmakeFlags = [ 42 44 "gui/qt" 45 + "CONFIG+=ltcg" 43 46 ]; 44 47 45 48 meta = with lib; { ··· 49 52 license = licenses.gpl3; 50 53 maintainers = with maintainers; [ luc65r ]; 51 54 platforms = [ "x86_64-linux" "x86_64-darwin" ]; 55 + broken = stdenv.isDarwin; 52 56 }; 53 57 }
+2
pkgs/applications/video/entangle/default.nix
··· 35 35 , udev 36 36 , util-linux 37 37 , xorg 38 + , zstd 38 39 }: 39 40 40 41 stdenv.mkDerivation rec { ··· 86 87 pcre 87 88 udev 88 89 util-linux 90 + zstd 89 91 ] ++ (with xorg; [ 90 92 libXdmcp 91 93 libXtst
+2 -2
pkgs/applications/video/minitube/default.nix
··· 6 6 7 7 mkDerivation rec { 8 8 pname = "minitube"; 9 - version = "3.8.1"; 9 + version = "3.9.1"; 10 10 11 11 src = fetchFromGitHub { 12 - sha256 = "3lpZyPwo4NnxZJKfmCFsH4WdakV4KB5BtCr5xsleeIQ="; 12 + sha256 = "sha256-1BVHxB7WtXCAJqP+uADszdVPc+T3ctCCzfoJPCb5ZTE="; 13 13 rev = version; 14 14 repo = "minitube"; 15 15 owner = "flaviotordini";
+3 -3
pkgs/applications/window-managers/i3/status-rust.nix
··· 12 12 13 13 rustPlatform.buildRustPackage rec { 14 14 pname = "i3status-rust"; 15 - version = "0.20.4"; 15 + version = "0.20.5"; 16 16 17 17 src = fetchFromGitHub { 18 18 owner = "greshake"; 19 19 repo = pname; 20 20 rev = "v${version}"; 21 - sha256 = "sha256-lohMrsMCAnb2p7H+xfa24Wx3LEFxCAlGHfP9A70Hg48="; 21 + sha256 = "sha256-7KEG4akn6tOUrgQUZFX0Wiz8YAKFUAr8AN16Xg8CLO4="; 22 22 }; 23 23 24 - cargoSha256 = "sha256-pe96VNTH49qgQ4yxKcAcQPN31W2k1mD9TdhNKBp4x5Q="; 24 + cargoSha256 = "sha256-GTE1KJ/ZpiqwmmKYx6kNzPNNmz0QHYWrIyKN49uzdZA="; 25 25 26 26 nativeBuildInputs = [ pkg-config makeWrapper ]; 27 27
+4 -3
pkgs/data/fonts/sarasa-gothic/default.nix
··· 5 5 in fetchurl { 6 6 name = "sarasa-gothic-${version}"; 7 7 8 - url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttf-${version}.7z"; 9 - sha256 = "094sl6gklrdv9pk4r6451dvz0fjyjmwys7i81qrz4ik1km5dfq9b"; 8 + # Use the 'ttc' files here for a smaller closure size. 9 + # (Using 'ttf' files gives a closure size about 15x larger, as of November 2021.) 10 + url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttc-${version}.7z"; 11 + sha256 = "0fzbqj32jiffqsr4s0i8fignk01v5d1rik6ldg2q7dgl1298sgk8"; 10 12 11 13 recursiveHash = true; 12 14 downloadToTemp = true; ··· 21 23 homepage = "https://github.com/be5invis/Sarasa-Gothic"; 22 24 license = licenses.ofl; 23 25 maintainers = [ maintainers.ChengCat ]; 24 - hydraPlatforms = [ ]; # disabled from hydra because it's so big 25 26 platforms = platforms.all; 26 27 }; 27 28 }
-2
pkgs/development/compilers/go/1.17.nix
··· 273 273 license = licenses.bsd3; 274 274 maintainers = teams.golang.members; 275 275 platforms = platforms.linux ++ platforms.darwin; 276 - # requires >=10.13 stdenv on x86_64-darwin 277 - badPlatforms = [ "x86_64-darwin" ]; 278 276 }; 279 277 }
+3 -3
pkgs/development/dhall-modules/dhall-grafana.nix
··· 4 4 name = "grafana"; 5 5 owner = "weeezes"; 6 6 repo = "dhall-grafana"; 7 - # 2021-11-05 8 - rev = "bf2f8c8ab44682c8cef4fdce2d2f7fbeb0cfe162"; 9 - sha256 = "0h1l39kj49yvadpbw6jw3mc7qzsmhxlqqpx3cgnr9f063nh73f96"; 7 + # 2021-11-06 8 + rev = "9ee0bb643f01db6d9935cf7df1914c32a92730b4"; 9 + sha256 = "0a123r5a33p8kaqs68rx2ycjr72xvxcpcmvpqxgb2jb05mnjj540"; 10 10 dependencies = [ dhallPackages.Prelude ]; 11 11 }
+2 -2
pkgs/development/libraries/precice/default.nix
··· 2 2 3 3 stdenv.mkDerivation rec { 4 4 pname = "precice"; 5 - version = "2.2.1"; 5 + version = "2.3.0"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "precice"; 9 9 repo = pname; 10 10 rev = "v${version}"; 11 - sha256 = "sha256-XEdrKhxG0dhsfJH6glrzc+JZeCgPEVIswj0ofP838lg="; 11 + sha256 = "sha256:0p8d2xf4bl41b30yp38sqyp4fipwgcdhl0khxcv5g69fxvz2i2il"; 12 12 }; 13 13 14 14 cmakeFlags = [
+2 -2
pkgs/development/python-modules/aioshelly/default.nix
··· 7 7 8 8 buildPythonPackage rec { 9 9 pname = "aioshelly"; 10 - version = "1.0.2"; 10 + version = "1.0.4"; 11 11 12 12 src = fetchFromGitHub { 13 13 owner = "home-assistant-libs"; 14 14 repo = pname; 15 15 rev = version; 16 - sha256 = "sha256-STJ9BDVbvlIMvKMiGwkGZ9Z32NvlE+3cyYduYlwTbx4="; 16 + sha256 = "sha256-Om+v+cGisfx2PkH/J08loZioUO6y9wi5+6kd2T+dfOo="; 17 17 }; 18 18 19 19 propagatedBuildInputs = [
+6 -4
pkgs/development/python-modules/dropbox/default.nix
··· 1 - { lib, buildPythonPackage, fetchPypi 1 + { lib, buildPythonPackage, fetchFromGitHub 2 2 , requests, urllib3, mock, setuptools, stone }: 3 3 4 4 buildPythonPackage rec { 5 5 pname = "dropbox"; 6 6 version = "11.22.0"; 7 7 8 - src = fetchPypi { 9 - inherit pname version; 10 - sha256 = "ab84c9c78606faa0dc94cdb95c6b2bdb579beb5f34fff42091c98a1e0fbeb16c"; 8 + src = fetchFromGitHub { 9 + owner = "dropbox"; 10 + repo = "dropbox-sdk-python"; 11 + rev = "v${version}"; 12 + sha256 = "0fhzpss3zs5x3hr4amrmw8hras75qc385ikpw0sx5a907kigk7w5"; 11 13 }; 12 14 13 15 postPatch = ''
+12 -3
pkgs/development/python-modules/flower/default.nix
··· 13 13 buildPythonPackage rec { 14 14 pname = "flower"; 15 15 version = "1.0.0"; 16 + format = "setuptools"; 16 17 17 18 src = fetchPypi { 18 19 inherit pname version; ··· 27 28 28 29 propagatedBuildInputs = [ 29 30 celery 30 - pytz 31 - tornado 32 31 humanize 33 32 prometheus-client 33 + pytz 34 + tornado 34 35 ]; 35 36 36 37 checkInputs = [ ··· 38 39 pytestCheckHook 39 40 ]; 40 41 41 - pythonImportsCheck = [ "flower" ]; 42 + disabledTests = [ 43 + # AssertionError as the celery release can't be detected 44 + "test_default" 45 + "test_with_app" 46 + ]; 47 + 48 + pythonImportsCheck = [ 49 + "flower" 50 + ]; 42 51 43 52 meta = with lib; { 44 53 description = "Celery Flower";
+2 -2
pkgs/development/python-modules/flux-led/default.nix
··· 8 8 9 9 buildPythonPackage rec { 10 10 pname = "flux_led"; 11 - version = "0.24.14"; 11 + version = "0.24.17"; 12 12 13 13 disabled = pythonOlder "3.7"; 14 14 ··· 16 16 owner = "Danielhiversen"; 17 17 repo = "flux_led"; 18 18 rev = version; 19 - sha256 = "sha256-lHsMQbKKgHjxzaPdnqAY7WAZK3CiWfVr5Z5DWXsvRWI="; 19 + sha256 = "sha256-NAmODGk60Lt9OiTppYV40vvGL6g28spKRC7NxVFubxE="; 20 20 }; 21 21 22 22 propagatedBuildInputs = [
+20 -11
pkgs/development/python-modules/pip-tools/default.nix
··· 3 3 , pythonOlder 4 4 , buildPythonPackage 5 5 , pip 6 - , pytest 6 + , pytestCheckHook 7 7 , pytest-xdist 8 8 , click 9 9 , setuptools-scm 10 - , git 11 - , glibcLocales 12 - , mock 13 10 , pep517 14 11 }: 15 12 ··· 24 21 sha256 = "992d968df6f1a19d4d37c53b68b3d4b601b894fb3ee0926d1fa762ebc7c7e9e9"; 25 22 }; 26 23 27 - LC_ALL = "en_US.UTF-8"; 28 - checkInputs = [ pytest git glibcLocales mock pytest-xdist ]; 29 - propagatedBuildInputs = [ pip click setuptools-scm pep517 ]; 24 + checkInputs = [ 25 + pytestCheckHook 26 + pytest-xdist 27 + ]; 28 + 29 + nativeBuildInputs = [ 30 + setuptools-scm 31 + ]; 32 + 33 + propagatedBuildInputs = [ 34 + click 35 + pep517 36 + pip 37 + ]; 30 38 31 - checkPhase = '' 32 - export HOME=$(mktemp -d) VIRTUAL_ENV=1 33 - py.test -m "not network" 34 - ''; 39 + disabledTests = [ 40 + # these want internet access 41 + "network" 42 + "test_direct_reference_with_extras" 43 + ]; 35 44 36 45 meta = with lib; { 37 46 description = "Keeps your pinned dependencies fresh";
+2 -2
pkgs/development/python-modules/pygls/default.nix
··· 12 12 13 13 buildPythonPackage rec { 14 14 pname = "pygls"; 15 - version = "0.11.2"; 15 + version = "0.11.3"; 16 16 disabled = !isPy3k; 17 17 18 18 src = fetchFromGitHub { 19 19 owner = "openlawlibrary"; 20 20 repo = pname; 21 21 rev = "v${version}"; 22 - sha256 = "sha256-zgQ5m198HMyFFrASSYCzn0EDLLeVy2j4LD0rEyEgahQ="; 22 + sha256 = "sha256-/nmDaA67XzrrmfwlBm5syTS4hn25m30Zb3gvOdL+bR8="; 23 23 }; 24 24 25 25 SETUPTOOLS_SCM_PRETEND_VERSION = version;
+2 -2
pkgs/development/python-modules/restfly/default.nix
··· 11 11 12 12 buildPythonPackage rec { 13 13 pname = "restfly"; 14 - version = "1.4.3"; 14 + version = "1.4.4"; 15 15 16 16 src = fetchFromGitHub { 17 17 owner = "stevemcgrath"; 18 18 repo = pname; 19 19 rev = version; 20 - sha256 = "sha256-F+1Z+VAJkfqD345ZLE/DMyDW0ZqdV+wIA9N6ohl2rbY="; 20 + sha256 = "sha256-T5NfG+Vuguh6xZ/Rdx3a1vMDgXPcl/OYhOkxb76yEXg="; 21 21 }; 22 22 23 23 propagatedBuildInputs = [
+2 -2
pkgs/development/python-modules/systembridge/default.nix
··· 7 7 8 8 buildPythonPackage rec { 9 9 pname = "systembridge"; 10 - version = "2.2.0"; 10 + version = "2.2.1"; 11 11 12 12 src = fetchFromGitHub { 13 13 owner = "timmo001"; 14 14 repo = "system-bridge-connector-py"; 15 15 rev = "v${version}"; 16 - sha256 = "sha256-VR5juaZdZaEo7S0XXJkspcKmH1alitNIWmI0g/dFBbM="; 16 + sha256 = "sha256-TYRsk47cVlXQ7RWyEGxXmxdHVES6WNbzdW8ZJSkVtb8="; 17 17 }; 18 18 19 19 propagatedBuildInputs = [
+38
pkgs/development/python-modules/watermark/default.nix
··· 1 + { lib 2 + , fetchFromGitHub 3 + , buildPythonPackage 4 + , importlib-metadata 5 + , ipython 6 + , pytestCheckHook 7 + , pythonOlder 8 + }: 9 + 10 + buildPythonPackage rec { 11 + pname = "watermark"; 12 + version = "2.2.0"; 13 + disabled = pythonOlder "3.7"; 14 + 15 + src = fetchFromGitHub { 16 + owner = "rasbt"; 17 + repo = pname; 18 + rev = "d3553b68dd30ac5b0951a6fae6083236e4c7f3bd"; 19 + sha256 = "0w2mzi344x1mrv8d9jca67bhig34jissr9sqrk68gpg5n10alblb"; 20 + }; 21 + 22 + propagatedBuildInputs = [ 23 + ipython 24 + ] ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata ]; 25 + 26 + checkInputs = [ 27 + pytestCheckHook 28 + ]; 29 + 30 + pythonImportsCheck = [ "watermark" ]; 31 + 32 + meta = with lib; { 33 + description = "IPython extension for printing date and time stamps, version numbers, and hardware information."; 34 + homepage = "https://github.com/rasbt/watermark"; 35 + license = licenses.bsd3; 36 + maintainers = with maintainers; [ nphilou ]; 37 + }; 38 + }
+161 -148
pkgs/development/r-modules/bioc-annotation-packages.nix
··· 4 4 # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix 5 5 6 6 { self, derive }: 7 - let derive2 = derive { biocVersion = "3.13"; }; 7 + let derive2 = derive { biocVersion = "3.14"; }; 8 8 in with self; { 9 - AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; }; 9 + AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; 10 10 AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.2"; sha256="06phi519h709nabs09xqnfyqjilj1fzmxb272hy7gy8g6lvx3g7d"; depends=[AnnotationHubData ensembldb]; }; 11 - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.0.0"; sha256="0qr12l940g0pkk8mcz63s17y68wk03vj7almgwlfsz04mzk303bj"; depends=[AnnotationHub]; }; 12 - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.0.0"; sha256="1r9fvkfkzsy58qg3wmr9h1h4ycjpjyxmngnl3dmapp55rd7n49ns"; depends=[AnnotationHub]; }; 11 + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.2.0"; sha256="0x82jcvza2vy0vi8pl0c55nsggpbrfgfxvqli38q29km8cdqcxmi"; depends=[AnnotationHub]; }; 12 + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.2.0"; sha256="12a8wh671zvwknr47cbcmijpwjm13wyd7plmifkdpj0vqgc78q0a"; depends=[AnnotationHub]; }; 13 13 AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; 14 - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="0.99.8"; sha256="0c9x07i3pmr7rd7i76hmzk2zjfi091p575q75kyy3jmxd0dpgcac"; depends=[AnnotationHub]; }; 14 + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.2.0"; sha256="1lw5z7dblczmsz5mkq1fh51y82j23kbb1hkk14r27y863n22f2by"; depends=[AnnotationHub]; }; 15 15 AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; 16 16 BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; 17 17 BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; ··· 71 71 BSgenome_Hsapiens_UCSC_hg18_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg18.masked"; version="1.3.99"; sha256="031sr3y95c32igk3lrrsafdm9i1zprjran8gak06arqc0hvzbfk0"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg18]; }; 72 72 BSgenome_Hsapiens_UCSC_hg19 = derive2 { name="BSgenome.Hsapiens.UCSC.hg19"; version="1.4.3"; sha256="06lx7q7i52lg3vkjkqy492z9ianzgi4nhs9m1jrxjjb4hgbnbyjv"; depends=[BSgenome]; }; 73 73 BSgenome_Hsapiens_UCSC_hg19_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg19.masked"; version="1.3.993"; sha256="19533ihgad67bzhavycv6z708012ylz9cw1qdfmk2b7ikf3kiaz9"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19]; }; 74 - BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.3"; sha256="1k4ya5w0bgcqk06518ax803xfanw6x1qjzm6lsd3nplkjg5136f2"; depends=[BSgenome]; }; 74 + BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.4"; sha256="03xmh6q99nqjxz29m6j0ymxlk22jq0nlvpf4a2yhg3hgnxqkakh2"; depends=[BSgenome]; }; 75 75 BSgenome_Hsapiens_UCSC_hg38_dbSNP151_major = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major"; version="0.0.9999"; sha256="0290fk7jvlcb1mh6nlyqagqskfh0dvaysj1d6s15bgygnlm3r726"; depends=[BSgenome]; }; 76 76 BSgenome_Hsapiens_UCSC_hg38_dbSNP151_minor = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor"; version="0.0.9999"; sha256="1xw8vckhsak35r942yyvlrpbhb2w4vzah8wfgmn3vyj1zklk3913"; depends=[BSgenome]; }; 77 - BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.3.993"; sha256="1ncsfa5nialkzllxdj9h5c48hrcv7vrvh7wfnw32y6bqdzg4rwhs"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; 77 + BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.4.4"; sha256="0ac5c265pgq1yzyp655ix0awdszzxf3mhrp0qsfsb73msqb2s99n"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; 78 78 BSgenome_Mdomestica_UCSC_monDom5 = derive2 { name="BSgenome.Mdomestica.UCSC.monDom5"; version="1.4.2"; sha256="16kzb66kjpmf9j92pwh98ah5rhrnfyzdpr0rk659zham6dzga9ck"; depends=[BSgenome]; }; 79 79 BSgenome_Mfascicularis_NCBI_5_0 = derive2 { name="BSgenome.Mfascicularis.NCBI.5.0"; version="1.4.2"; sha256="1lrdj7aibx4i60hpbaqgk3qir9zjs67mxdgp5jmgmw7gf2nwyn3x"; depends=[BSgenome]; }; 80 80 BSgenome_Mfuro_UCSC_musFur1 = derive2 { name="BSgenome.Mfuro.UCSC.musFur1"; version="1.4.1"; sha256="0c0569a1k36sk0vzf7afhnfm0n2nwcdp3dc88s1hghpg7lwi9g9j"; depends=[BSgenome]; }; ··· 84 84 BSgenome_Mmulatta_UCSC_rheMac3 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3"; version="1.4.0"; sha256="0r3v4p567rxcczwqi7zdz7pmdiffgrq83j488libdb4s0hdg5jmi"; depends=[BSgenome]; }; 85 85 BSgenome_Mmulatta_UCSC_rheMac3_masked = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3.masked"; version="1.3.99"; sha256="0k3j40hrys60qdij5rsxdzyx9bfmryaki5p7i4d5m0xmldlk9anr"; depends=[BSgenome BSgenome_Mmulatta_UCSC_rheMac3]; }; 86 86 BSgenome_Mmulatta_UCSC_rheMac8 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac8"; version="1.4.2"; sha256="18z6vl89jkjzvppz3r93b2s32l17hz6pfp36wv5wvhm0c0rhnhmw"; depends=[BSgenome]; }; 87 - BSgenome_Mmusculus_UCSC_mm10 = derive2 { name="BSgenome.Mmusculus.UCSC.mm10"; version="1.4.0"; sha256="12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"; depends=[BSgenome]; }; 88 - BSgenome_Mmusculus_UCSC_mm10_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm10.masked"; version="1.3.99"; sha256="12d7fkzh0b39b8f6qbgx07x5bmab91is4y846lp4zpbm3iya01g9"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm10]; }; 87 + BSgenome_Mmusculus_UCSC_mm10 = derive2 { name="BSgenome.Mmusculus.UCSC.mm10"; version="1.4.3"; sha256="1vprkywr72nqf847vzmgymylcdb45g4hy30fwx6fzwddkyzh5xnw"; depends=[BSgenome]; }; 88 + BSgenome_Mmusculus_UCSC_mm10_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm10.masked"; version="1.4.3"; sha256="04352r264jmpm5abbcyylz0axw24sm58ki3xvp434kp3cfdx32gc"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm10]; }; 89 + BSgenome_Mmusculus_UCSC_mm39 = derive2 { name="BSgenome.Mmusculus.UCSC.mm39"; version="1.4.3"; sha256="0rpxdaa5w0p841kl5h6ngb49zr9q33ad0zgnw9xdpp1vfh0l47xm"; depends=[BSgenome]; }; 89 90 BSgenome_Mmusculus_UCSC_mm8 = derive2 { name="BSgenome.Mmusculus.UCSC.mm8"; version="1.4.0"; sha256="1al34aa11d6kr0cr4xrabix1xmqc96zzgik5p4yc8r0rba3n100a"; depends=[BSgenome]; }; 90 91 BSgenome_Mmusculus_UCSC_mm8_masked = derive2 { name="BSgenome.Mmusculus.UCSC.mm8.masked"; version="1.3.99"; sha256="1a2ywmy96cbwmvbdid73c0kln56qrbd7ipfzkzl97f56k3g985j5"; depends=[BSgenome BSgenome_Mmusculus_UCSC_mm8]; }; 91 92 BSgenome_Mmusculus_UCSC_mm9 = derive2 { name="BSgenome.Mmusculus.UCSC.mm9"; version="1.4.0"; sha256="1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"; depends=[BSgenome]; }; ··· 118 119 BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; 119 120 BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; 120 121 BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; 122 + CTCF = derive2 { name="CTCF"; version="0.99.4"; sha256="1xp10ra53s59nznnxlgw115j46yg5sy13z6wmhqzv6y789s3p49k"; depends=[]; }; 121 123 ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; 122 124 DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; 123 125 ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; ··· 139 141 FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; 140 142 FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; 141 143 GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; 142 - GO_db = derive2 { name="GO.db"; version="3.13.0"; sha256="14apqisww807wcj93slrgijclb99ck94li0q12cb24wrs15q885x"; depends=[AnnotationDbi]; }; 143 - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.6"; sha256="0c8zz7qdraci9lm39m0brhyghy963wchnw97bd9nksphlpg9l809"; depends=[]; }; 144 - GenomicState = derive2 { name="GenomicState"; version="0.99.9"; sha256="0qpa77bsycm3y82jrxq7r27gsygb1qbhkakz3cln3jv3sfkf0aj7"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; 144 + GO_db = derive2 { name="GO.db"; version="3.14.0"; sha256="1ryqhzyxs49ffhjcml4dlb88l1gpf85icba7n92psrk2ls0sdl25"; depends=[AnnotationDbi]; }; 145 + GeneSummary = derive2 { name="GeneSummary"; version="0.99.3"; sha256="0za1cy8kz8all8g5wk3475lvzwp25wq7b7p0568didfif88w5pj2"; depends=[]; }; 146 + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.7"; sha256="11qrdcqlrv5n5wfsfz1i3v9cnyvkymfx7ir1dgdg1n1yvp8blz11"; depends=[]; }; 147 + GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; 145 148 Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; 146 149 Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; 147 150 HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; ··· 164 167 JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; 165 168 JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; 166 169 LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; 167 - LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; }; 168 - LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="2.0.1"; sha256="004ajnirlqlw5zknhv456z5ziiig57qmcdp3w2cr7izdk2d97lbc"; depends=[LRBaseDbi RSQLite]; }; 169 - LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="2.0.1"; sha256="0iazyqrqgc4g5kk25vzssfxjxfvp70mhnx4fpwcg73pfy4wizxjp"; depends=[LRBaseDbi RSQLite]; }; 170 - LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="2.0.1"; sha256="1czhw53163cmamigzy30kwa0h3pid95qq47pf6f3b4sy8x3sd9if"; depends=[LRBaseDbi RSQLite]; }; 171 - LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="2.0.1"; sha256="0xwzwhc1ksyp1k3xxd0mdk8bkw1npblwrpalnyd4awlx4lh6k8b5"; depends=[LRBaseDbi RSQLite]; }; 172 - LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="2.0.1"; sha256="1nkgli39szcjh09ywn1a3zbj0k5pqng9ixaqkl0yhqqy626vk0w0"; depends=[LRBaseDbi RSQLite]; }; 173 - LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="2.0.1"; sha256="0lvrjspmzjpx9q77lqwpqmr5jpqaqv8rjyfr3pxyv1d0kfdnqii0"; depends=[LRBaseDbi RSQLite]; }; 174 - LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="2.0.1"; sha256="105nmhlg80jwljkpn73cx4lc4nsxadcl4pfbyl8pj1ppk1cdj1dz"; depends=[LRBaseDbi RSQLite]; }; 175 - LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="2.0.1"; sha256="0p99lx34fgvknw6301r8r375w0mapsan7f8aqjd2jxvjaig2375s"; depends=[LRBaseDbi RSQLite]; }; 176 - LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="2.0.1"; sha256="1hpw675m2y6nm3i3mvh9whxlaz5zpvz4wr55rha7yisxfsj6qq9a"; depends=[LRBaseDbi RSQLite]; }; 177 - LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="2.0.1"; sha256="18pa9f16hn4awynbhmvrkdxdprr2dj0mip132sk1mfkxic2cf014"; depends=[LRBaseDbi RSQLite]; }; 178 - LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.1"; sha256="18bk6p405cpws0ynh0q17w5fmriplmamhy1rds5rc6hf05lr2sb8"; depends=[LRBaseDbi RSQLite]; }; 179 170 LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; 180 171 LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; 181 172 MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.10.0"; sha256="057531mvxip32lyqak4hh964ms0cil29p5cch5fpjw5vbbzidrlc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; ··· 190 181 MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.10.0"; sha256="0yd9r26l2s3ykw5d2lndnx4m1h401g7hsnkk0wywczdc1xa39y4n"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 191 182 MafDb_gnomAD_r2_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.1.GRCh38"; version="3.10.0"; sha256="1bshq6ncns7xdrpkkc84m4x6a1pnm3ssp02f0d23yhlkhh0h40zd"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 192 183 MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 193 - MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="0f1qjngpshdpdg6i05qh8pmr56x4wvx29ism3vsid099ammnxdca"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 194 184 MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 195 185 MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 196 - MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="1hhm0qla0av6fcgrf4wivwfczs7b6a473qswii2axpxq7srbsgaz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; 197 186 MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.0"; sha256="1fqw3qv4cw043ifyrcddsq3z13y4gk12cg7j39bg1am3msa7zmbg"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; 198 - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.1"; sha256="1d33krs3xs0pa14gm7haiaglnlx5z41m6gx92gg8ckfpblyz49q2"; depends=[MeSHDbi]; }; 199 - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.1"; sha256="195hs3x0sfs4s5kry452r0fhnq19ayv82j4dr1394zr104r17kb1"; depends=[MeSHDbi]; }; 200 - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.1"; sha256="1kyjhnfv3b0jxdali2v1wdqd1zkl9vsf2z9ba6dkhlm1hghsnv63"; depends=[MeSHDbi]; }; 201 - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.15.1"; sha256="1szzcnf5fwaqpj2ra2b1xics971lwg3rnzdria8j3yl705zxnl3g"; depends=[MeSHDbi]; }; 202 - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.15.1"; sha256="1pgfhm5qhm9d7s0sr4iij7272m2i6y9di51r137mrmpc5fcc1mmx"; depends=[MeSHDbi]; }; 203 - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.15.1"; sha256="117sz11lg3kl90v7bkai3acyvcxjggar8fpgyac99369pinkqikp"; depends=[MeSHDbi]; }; 204 - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.15.1"; sha256="1hwhvm7ip3kjdb31glasixqzwja37352x70id18n2bfbjgq4x3r2"; depends=[MeSHDbi]; }; 205 - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.15.1"; sha256="12dmbr6aynxyfg0cv5jrshj27rmk89apbpsg1zxf7cmqkkvq8bcv"; depends=[MeSHDbi]; }; 206 - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.15.1"; sha256="1y6r6hillawafxgxvkcffg8bx125ra6b4f9cclcz1n3qzqfnjj0s"; depends=[MeSHDbi]; }; 207 - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.15.1"; sha256="0d363769blvq0hm3yzbff007sn3sq8fb4gay8qgrcj2jrnnd4wp4"; depends=[MeSHDbi]; }; 208 - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.15.1"; sha256="0g9m2y209gl6nyn05j4fznnh21raz8xwj1if7zb1aixxzykqi313"; depends=[MeSHDbi]; }; 209 - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.15.1"; sha256="1z3id2838fd14x9nib931cmjb0x339hq1izdr3gq8kc4yfvl40r5"; depends=[MeSHDbi]; }; 210 - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.15.1"; sha256="0fbg3sv5addw9ad586nyh0vbwfdnjzwqnqxa8jz8plpmjn043wl0"; depends=[MeSHDbi]; }; 211 - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.15.1"; sha256="19hp0f0vqlzdqbn9qs839b8sflbcww02k7fzsmyzpqd38kvhwf2w"; depends=[MeSHDbi]; }; 212 - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.15.1"; sha256="19jjdp5cq1pisgk7nxwi8cdzjk44bbh02fjy027f50i6dnj75i7i"; depends=[MeSHDbi]; }; 213 - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.15.1"; sha256="0y53q8q1ca93ri6msnjzj3m6rqangidfvvchirgk9pa4k67dh534"; depends=[MeSHDbi]; }; 214 - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.15.1"; sha256="0jsbncm9ggi63fjng8nl08bhzajgjrckfq2ngqbcnmf8p1gzg60a"; depends=[MeSHDbi]; }; 215 - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.15.1"; sha256="1w47fmy9akwxxsvdx7d1s0qdzafxyghl6lh33cy5jcb4bj525635"; depends=[MeSHDbi]; }; 216 - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.15.1"; sha256="0bq8r70vv55shfgdx94qiympk0vf9rf7xr467bps82ks0kklzr7v"; depends=[MeSHDbi]; }; 217 - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.15.1"; sha256="1k5dfwm5fn4zghaphsjs0f7jzjcdcay1afm2c09qyh7xv9m1cpry"; depends=[MeSHDbi]; }; 218 - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.15.1"; sha256="0idh5djnz1wwxp09xpjwac4dhz6kvwp1l0j92195b0xwv4n11pzk"; depends=[MeSHDbi]; }; 219 - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.15.1"; sha256="0aprxgrlz7hnk31fr6vqpprahjn07r48dnva9gszgyp740mx1m1d"; depends=[MeSHDbi]; }; 220 - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.15.1"; sha256="0wbv1f5bsb3xl8rj1qndb0n77rmg2s9m5nl2f95naqaf3hfypsmd"; depends=[MeSHDbi]; }; 221 - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.15.1"; sha256="07zzwf4aqpkvjmbbvzc6bq662frxblsx4l0ljna70gr4xb218swl"; depends=[MeSHDbi]; }; 222 - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.15.1"; sha256="1fls5b3w6n2n9vy4fsvri74f6r2qmlrx8vlrgqmb7plxdp35q0jw"; depends=[MeSHDbi]; }; 223 - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.15.1"; sha256="0fphjwbxnymf30ccppjyfgwz0pv5n1lwzm7h05lppk7a7f8ys665"; depends=[MeSHDbi]; }; 224 - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.15.1"; sha256="0921dxba9crqml8in0hwnwlzcqvjhhi94mllbmksp8cwka48rzs8"; depends=[MeSHDbi]; }; 225 - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.15.1"; sha256="087pcpbskgc59c04bn3201d4agy9vsma0r1wsf60zxr3l491yn6v"; depends=[MeSHDbi]; }; 226 - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.15.1"; sha256="0drqyd131l7vr9v899hjvva4d5mmv7fbhmflgz49i2iy3360xz32"; depends=[MeSHDbi]; }; 227 - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.15.1"; sha256="0i3j3392d690xkg7cfzqnw0s09q8mpiq2wfpifkk0hbxnc5aahwd"; depends=[MeSHDbi]; }; 228 - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.15.1"; sha256="168jy0v39j2fpy59s3dpz0xs3axmnc7kb1dv88b5j1xccymkd3gl"; depends=[MeSHDbi]; }; 229 - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.15.1"; sha256="1ibbh07nczp75f0x2mnq5mnli6fgg7mn2aqk434l3iwjx686mcpj"; depends=[MeSHDbi]; }; 230 - MeSH_Eca_eg_db = derive2 { name="MeSH.Eca.eg.db"; version="1.15.1"; sha256="1b16fqx56sl1ask5hk3krw2p7ph5q9wg78zygbd1pbx04q95469r"; depends=[MeSHDbi]; }; 231 - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.15.1"; sha256="0p3gf9hwr3hrzlczwr7lhwxnl46iqfz66dvz38h7c02bjlpjjdjd"; depends=[MeSHDbi]; }; 232 - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.15.1"; sha256="0wda4hkzwfvkn51fchzpwgc5p9964yyfjg8bpvk2331zx9lsvgs2"; depends=[MeSHDbi]; }; 233 - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.15.1"; sha256="0d72haww3zi1x06qllwnlsrwkwivn6z8ws9nkrnb24vn3saxv41b"; depends=[MeSHDbi]; }; 234 - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.15.1"; sha256="1xbwkxn351yhjbc529y4fkj366a3pnk1b8s3h1ys5w8czz3szfn3"; depends=[MeSHDbi]; }; 235 - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.15.1"; sha256="1cgfwp8hk40af0d5rzi3vsmvx22jp1nwsgyld1mzkry2i8ilbzyj"; depends=[MeSHDbi]; }; 236 - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.15.1"; sha256="1r2bnakd47gq95s47rywhak7csz77zphml0zfrchi189kh01prg4"; depends=[MeSHDbi]; }; 237 - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.15.1"; sha256="1x3rjw2hvzxaq68abyh8b9bw1zizkrqxj6pgd5d6ggcl8l0x1fnz"; depends=[MeSHDbi]; }; 238 - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.15.1"; sha256="156dc2vssa8x0a0985fhyx7h5vaw4d3ingz0s09181ai9fxqc1jx"; depends=[MeSHDbi]; }; 239 - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.15.1"; sha256="0a3gdmpp9y6s6aw7lyh7j25dahgmkb0azg7g57073fqwhgivs2mx"; depends=[MeSHDbi]; }; 240 - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.15.1"; sha256="1gil8g9h8qyd0b4qmqrk7dakvjqwlychzld0wv20z7hipqas975d"; depends=[MeSHDbi]; }; 241 - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.15.1"; sha256="1p1f6vk1f360zx4wkzcyczi4p4x6mgf4pfrvhslz4kn6xg0cnm73"; depends=[MeSHDbi]; }; 242 - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.15.1"; sha256="16372gs4nh9cr18xy4nzssjmdarxbkx7c6208s4vx6232mbc1azl"; depends=[MeSHDbi]; }; 243 - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.15.1"; sha256="1557vn9sy1a2picwj27gkajqp8qlqza0yqf69czimd1myskdicps"; depends=[MeSHDbi]; }; 244 - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.15.1"; sha256="1gi2v9x0jja6ambdljp9m11g6yhd3wcfcjblgx58i42ix5h5mviw"; depends=[MeSHDbi]; }; 245 - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.15.1"; sha256="1vplci90jb1cihwbxqkynqk9frr7j09gh80q020dhm24f3rwlfqk"; depends=[MeSHDbi]; }; 246 - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.15.1"; sha256="1fmwfmws100qmg3wy25qg0s36nk81rwf6b1csvqg4vfy9p0r2pdw"; depends=[MeSHDbi]; }; 247 - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.15.1"; sha256="019ydfl6dqymn8yk2n101rdrmyv82ypcbvwmslimdhnlk3bzrj3a"; depends=[MeSHDbi]; }; 248 - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.15.1"; sha256="1jadbca3c3xw24p8zvrd3q7ijjrrfjxkf1bw08ay3a9gazqyv0rh"; depends=[MeSHDbi]; }; 249 - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.15.1"; sha256="028lw4xjd1v7afp1l0xizswciy1hxhllrf9ij328si5a0kb3dxwc"; depends=[MeSHDbi]; }; 250 - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.15.1"; sha256="1hdk3s3ixh1haqp70ww547cbnwhllk6fhc4fgriidw0jivbkawx1"; depends=[MeSHDbi]; }; 251 - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.15.1"; sha256="00hy436bbk7jza00dv2xgnbji3k72x405n88pgd8d9rgj7cmqvjp"; depends=[MeSHDbi]; }; 252 - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.15.1"; sha256="04pprh5m431cpk4whfsiqb8fglda82jk4d06nhlz9k9nd5x9np82"; depends=[MeSHDbi]; }; 253 - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.15.1"; sha256="1a0q8xyhfvjvdsxq5hgh255q3rg823l1b8nyswnkai3sl3hq3szd"; depends=[MeSHDbi]; }; 254 - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.15.1"; sha256="0z4l55029lrmvysj26vn97c690yyhji46axvxsdjvzwp8llhwy3m"; depends=[MeSHDbi]; }; 255 - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.15.1"; sha256="1h1ci6y0hjii1r6gp24y2m7qqn8d0r954swbc9crb0i2mfak7l1a"; depends=[MeSHDbi]; }; 256 - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.15.1"; sha256="1rfxbfz72xazay0rszhjvxxqry532dx72kkp5vd0pi44536kly49"; depends=[MeSHDbi]; }; 257 - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.15.1"; sha256="100fcybyv4lsnxj23ndchhn25i2bfppk6w0y2lfnrla1vn8p5nnp"; depends=[MeSHDbi]; }; 258 - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.15.1"; sha256="1y5nh82hbwh7higzg0fv4rkvxl2p988w7aznygaq5z3g1q15l9sp"; depends=[MeSHDbi]; }; 259 - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.15.1"; sha256="09vj1ix13kxyb330s69nnig07a7cwyz7nasvv5kv83cnc27df92m"; depends=[MeSHDbi]; }; 260 - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.15.1"; sha256="0gmpcabxs0d61krhyllyrb92x0xgr67jv2wc8qbjv8m8vpiynnxh"; depends=[MeSHDbi]; }; 261 - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.15.1"; sha256="05ybk27chnxf3mqvngfzlrmnlpjdraqzd0qcsj6zmhsyx6j20qh5"; depends=[MeSHDbi]; }; 262 - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.15.1"; sha256="1rkc9gv9an0zan04qalmyvry380yhf2vx8scfvck9jwkq5x05w97"; depends=[MeSHDbi]; }; 263 - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.15.1"; sha256="1nak2sz25l8mc3f60h84519wm7lb8iamj9116mbf4b6ybdp0k4gd"; depends=[MeSHDbi]; }; 264 - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.15.1"; sha256="16j9wiv0lgik94yp7vqgcc5lykjynn07sbvvq2llcyvr6n3l3gwy"; depends=[MeSHDbi]; }; 265 - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.15.1"; sha256="0j0ygcrfx2df2q597wkkiqg9264n2v7bsh3kfvra9ma3wdxqlipd"; depends=[MeSHDbi]; }; 266 - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.15.1"; sha256="0dnhjs43v9q42w82km5vvs8p8zniljvskiv946psy2z8l27q6srj"; depends=[MeSHDbi]; }; 267 - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.15.1"; sha256="1n3kmkqgb8nnm13jrhn6dzpjcqgddf7k68vsm52bkg7dh3dfcn8v"; depends=[MeSHDbi]; }; 268 - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; }; 269 - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; }; 270 - MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; }; 271 187 MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; 272 188 MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; 273 189 Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; ··· 275 191 Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; 276 192 Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; 277 193 OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; 278 - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.13.0"; sha256="0205lwgdh94ha4dsr4qm9ypa6i433swlqda5bgn1hrkgz0bizbnw"; depends=[AnnotationDbi]; }; 194 + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; }; 279 195 PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; 280 - PFAM_db = derive2 { name="PFAM.db"; version="3.13.0"; sha256="1rc2vlfjxyrgx0csiiw8ambsc38c2yly1lzpnfq0lbrz3vm4r12n"; depends=[AnnotationDbi]; }; 196 + PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; }; 281 197 POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; 282 198 PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; 283 199 PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; ··· 302 218 TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; 303 219 TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; 304 220 TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; 221 + TxDb_Athaliana_BioMart_plantsmart51 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart51"; version="0.99.0"; sha256="17vbgpxzr7xkd4dnggj89hbnziczgdgk01gvmysl0cw68zsalsi6"; depends=[AnnotationDbi GenomicFeatures]; }; 305 222 TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.12.0"; sha256="1k06p4jk3lw8xkn31yjwmwk96rkrl6wqq3rmc8bxlbrdi99lh09c"; depends=[AnnotationDbi GenomicFeatures]; }; 306 223 TxDb_Btaurus_UCSC_bosTau9_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau9.refGene"; version="3.10.0"; sha256="1v7q9jaaj1n2vabjj6ij6pz0g89nqlyy4y4g65irz6cm5mvik4q9"; depends=[AnnotationDbi GenomicFeatures]; }; 307 224 TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.12.0"; sha256="0vkra4f05s8nd3xvma1dw6zk5mn7yvnxykx1cs9zad041i1447m3"; depends=[AnnotationDbi GenomicFeatures]; }; 308 225 TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.6"; sha256="1aq4jhn2c67wibq02l8drrjscmicbj6z35d0jksq8mwhz8k30zn6"; depends=[AnnotationDbi GenomicFeatures]; }; 309 226 TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; 310 227 TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; }; 228 + TxDb_Cfamiliaris_UCSC_canFam4_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam4.refGene"; version="3.14.0"; sha256="1xw3kkn2kbrv0yni95sm4sbrxzsg5y21si1plpfcdij78ndhia7d"; depends=[AnnotationDbi GenomicFeatures]; }; 229 + TxDb_Cfamiliaris_UCSC_canFam5_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam5.refGene"; version="3.14.0"; sha256="1ikadiq14rn8f5ayas0ndkwpafzhpbmawgczyq2hcrl4jpky8vdj"; depends=[AnnotationDbi GenomicFeatures]; }; 311 230 TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; 312 231 TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.12.0"; sha256="0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"; depends=[AnnotationDbi GenomicFeatures]; }; 313 232 TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.6"; sha256="1isd4idvh9flvirrq760cw5lc1nwqjx0q76p9dp01wbbbsb3rfnk"; depends=[AnnotationDbi GenomicFeatures]; }; ··· 319 238 TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; 320 239 TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; 321 240 TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; 322 - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.13.0"; sha256="1r1hfd1z2rqnhs2s39clnfznlncij503dkpadmdiz3qsfv4x7glc"; depends=[AnnotationDbi GenomicFeatures]; }; 241 + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.14.0"; sha256="1akz7rwchalnv8pd1x9y21zaj82kp82nbvm5ghhdl7z49d7spg6c"; depends=[AnnotationDbi GenomicFeatures]; }; 323 242 TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.13.0"; sha256="07b1bxg17kql6kivwz2gwwjfk9b052q610jciw7c2g4lr425x7ja"; depends=[AnnotationDbi GenomicFeatures]; }; 324 - TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.10.0"; sha256="1d1gvs6877649zwgja1z5x0mgci2kirbj7pzhb22xyinif3bhz26"; depends=[AnnotationDbi GenomicFeatures]; }; 243 + TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; 325 244 TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; 326 245 TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; 327 246 TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; ··· 336 255 TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.12.0"; sha256="08kf9kmdvifcbz0lc8paqp10x272b0f1jh6bj241ii455xsby2zi"; depends=[AnnotationDbi GenomicFeatures]; }; 337 256 TxDb_Rnorvegicus_UCSC_rn6_ncbiRefSeq = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq"; version="3.12.0"; sha256="1gb8l88z1xiyc1r8hvv4kdahd0py2dr5k0zizsrfh013p6q7z5yw"; depends=[AnnotationDbi GenomicFeatures]; }; 338 257 TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.6"; sha256="1piqli0wdq3r289is8lmijnshm8rmx7rphp2qfymlvc0jmvgs9wr"; depends=[AnnotationDbi GenomicFeatures]; }; 258 + TxDb_Rnorvegicus_UCSC_rn7_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn7.refGene"; version="3.14.0"; sha256="1h8427klifyv083c02p1r5ic16dr5q2b8r3nfgymrpx3nv6wy0hv"; depends=[AnnotationDbi GenomicFeatures]; }; 339 259 TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; 340 260 TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; 341 261 TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; ··· 347 267 ag_db = derive2 { name="ag.db"; version="3.13.0"; sha256="005y4whqjc8ndr1yjikzcz9196hvq3d04lz8pqfmhk6kyjljpgzh"; depends=[AnnotationDbi org_At_tair_db]; }; 348 268 agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; }; 349 269 agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; 350 - alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; }; 351 - alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; }; 352 - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.13.0"; sha256="16agn9hzkgmv5nvmc9v240kzwxyk4s6xlqywns5w4z9agwffpxzn"; depends=[AnnotationDbi]; }; 353 - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.13.0"; sha256="1mamn9mfh43m0bym7yfi1k7v08j6qdy3b34x1rs0k3kcsapwsmsq"; depends=[AnnotationDbi]; }; 270 + alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; 271 + alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; 272 + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.14.0"; sha256="10zgx5gkn1pz39yxszn24bp7r4rqlqqhk08v9a364w30vjxxs5j7"; depends=[AnnotationDbi]; }; 273 + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.14.0"; sha256="0ai9l79m8mdp8w00bfvrzryxy50dvdv203n8202ap2wgxc8z7krp"; depends=[AnnotationDbi]; }; 354 274 ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; 355 275 ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; 356 276 ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; 357 277 barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; 358 278 barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; 359 279 bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; 360 - bovine_db0 = derive2 { name="bovine.db0"; version="3.13.0"; sha256="0axvi95sldkyb9hcfs76wwba61p4yljmqwd87773xlrydrxci511"; depends=[AnnotationDbi]; }; 280 + bovine_db0 = derive2 { name="bovine.db0"; version="3.14.0"; sha256="18cdnn7igix9j5z66cjvj0nrmj8j4ngi6ml9y2byj9pk0ln17izs"; depends=[AnnotationDbi]; }; 361 281 bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; 362 282 bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; 363 283 bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; 364 284 bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; 365 285 cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; 366 286 canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; 367 - canine_db0 = derive2 { name="canine.db0"; version="3.13.0"; sha256="0jyj31g9m5sl8hpjsq82lg9zqk4jf5xjcmnws5r0gvzvn20in69j"; depends=[AnnotationDbi]; }; 287 + canine_db0 = derive2 { name="canine.db0"; version="3.14.0"; sha256="111m5h4zc5cg10rwia1w9rnqbwd2wdr1cg5b4imw9cy5xgnr0h4g"; depends=[AnnotationDbi]; }; 368 288 canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; 369 289 canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; 370 290 canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; ··· 374 294 celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; 375 295 celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; 376 296 chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; 377 - chicken_db0 = derive2 { name="chicken.db0"; version="3.13.0"; sha256="1zz5vqmdy33fykqvkdf3plc0vnkk429bah82qv9fnyw3sabpi914"; depends=[AnnotationDbi]; }; 297 + chicken_db0 = derive2 { name="chicken.db0"; version="3.14.0"; sha256="1409v0yd3zzpfg3a11nyyb7nyp1apcj2pjwwp9c5i3c6aa24zbww"; depends=[AnnotationDbi]; }; 378 298 chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; 379 299 chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; 380 - chimp_db0 = derive2 { name="chimp.db0"; version="3.13.0"; sha256="0ix8278z46gf6n7hbp9v80zv4r1lvisfag1mi0fxlr2ss3j7d79w"; depends=[AnnotationDbi]; }; 300 + chimp_db0 = derive2 { name="chimp.db0"; version="3.14.0"; sha256="02whgyab4fr2b9rnwhld2gyrqz8alfdn3mbx8v21klwvkcslvwav"; depends=[AnnotationDbi]; }; 301 + chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; 381 302 citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; 382 303 citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; 383 304 clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.8.0"; sha256="197s389bdzzqyvfrkrn6zqkm2d5s6rnays9hmsdrilxrm9gw32ag"; depends=[AnnotationDbi org_Hs_eg_db]; }; ··· 400 321 ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; 401 322 ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; 402 323 ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; 403 - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.13.0"; sha256="1xpla7q075b8gfbsp6ca8bk8qxib7wjz2w3lyhda08qaf5qnpywa"; depends=[AnnotationDbi]; }; 404 - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.13.0"; sha256="0wihjsbax9q5wc1jnxs8s4amxq5bvlghkwjx5vm8hi6zmjl6yhqv"; depends=[AnnotationDbi]; }; 324 + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.14.0"; sha256="0j7xshxhn2ysk5mg32hjxbc736g3zn15314p1mxwwwy579hrcbbn"; depends=[AnnotationDbi]; }; 325 + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.14.0"; sha256="13a4gnz2viia9v1hryvqs8nvm9gxz43lpwq872rjvcs07bazsjd5"; depends=[AnnotationDbi]; }; 405 326 ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; 406 327 ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; 407 328 ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; 408 329 ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; 330 + excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; 409 331 fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 410 - fly_db0 = derive2 { name="fly.db0"; version="3.13.0"; sha256="1ck3bfajzagk4k2nk6481i3lzin1m3y1pcwxjsq7g0v3k4mj2rpd"; depends=[AnnotationDbi]; }; 411 - geneplast_data = derive2 { name="geneplast.data"; version="0.99.2"; sha256="17smdm98djj9n7h6w7wy5k5q466zn9kqvs47qvf8kdmahghrdhii"; depends=[]; }; 332 + fly_db0 = derive2 { name="fly.db0"; version="3.14.0"; sha256="0jk5k5zpr4r9yn2l7vpb01xdmhi0pm3jg333jr7rv0c6fzjq5279"; depends=[AnnotationDbi]; }; 333 + geneplast_data = derive2 { name="geneplast.data"; version="0.99.4"; sha256="070g5a1xh1m3yar6dk3p1m86hpw8ll4xjir2n6sh2rfjw5kijmld"; depends=[]; }; 412 334 geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; 413 335 genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; 414 336 genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; ··· 476 398 hguqiagenv3_db = derive2 { name="hguqiagenv3.db"; version="3.2.3"; sha256="1ylji60m2zb8ialbl5wdrxy425sriq17z3bg8ikvc5b5gjsw6l7w"; depends=[AnnotationDbi org_Hs_eg_db]; }; 477 399 hi16cod_db = derive2 { name="hi16cod.db"; version="3.4.0"; sha256="0ydi0jljx8igzrqaspr9yywv43h2zimm9fk7xc55nm6mnp5jl7kl"; depends=[AnnotationDbi org_Hs_eg_db]; }; 478 400 hivprtplus2cdf = derive2 { name="hivprtplus2cdf"; version="2.18.0"; sha256="1jv4qzajikz7x4vq87wzn7hf6hx9r4c2gkjhfp93kqzwzddmigf4"; depends=[AnnotationDbi]; }; 479 - hpAnnot = derive2 { name="hpAnnot"; version="1.0.1"; sha256="16isg9byqc9ghipg7626mrijcs0bngz6n6hxz3m616v21cjyingj"; depends=[]; }; 401 + hpAnnot = derive2 { name="hpAnnot"; version="1.1.0"; sha256="1rnvmwyjq6vd6bh8a8y8gsw07kd4184h1a02i6aapp0szfghq9bp"; depends=[]; }; 480 402 hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; }; 481 403 hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; }; 482 404 hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.8.0"; sha256="00pqpqkjmkma9blbzhbmj98h18g46h75q2r2d2li7jhgns7b0pc3"; depends=[AnnotationDbi org_Hs_eg_db]; }; ··· 541 463 hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; 542 464 hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; 543 465 hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; 544 - human_db0 = derive2 { name="human.db0"; version="3.13.0"; sha256="1zibqmiy0irw10lr4jlfs5yxsrkngzbp1q9jqd3n5xrzn4p3lxxz"; depends=[AnnotationDbi]; }; 466 + human_db0 = derive2 { name="human.db0"; version="3.14.0"; sha256="1yinl32xaijp7b53z2dln8d60alafarkcxsiz55avxy3birnf1cq"; depends=[AnnotationDbi]; }; 545 467 human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; 546 468 human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; 547 469 human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; ··· 579 501 m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; 580 502 maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; 581 503 maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; 582 - malaria_db0 = derive2 { name="malaria.db0"; version="3.13.0"; sha256="0g4accix6yw1naf8sabqdp07yjmql0rqnjljw56kgq279hbc2vkp"; depends=[AnnotationDbi]; }; 504 + malaria_db0 = derive2 { name="malaria.db0"; version="3.14.0"; sha256="0c9i4kh7hpahrkc3l7cpg9x64fcwlkxsxa1ism774y0mifki0qy6"; depends=[AnnotationDbi]; }; 583 505 medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; 584 506 medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; 585 507 metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; ··· 634 556 mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; 635 557 mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; 636 558 mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; 637 - mouse_db0 = derive2 { name="mouse.db0"; version="3.13.0"; sha256="0k6a7mq2dxi8r6rxafdr1nxjlmiisfhi3g1qp7zv9isjiqpgjrld"; depends=[AnnotationDbi]; }; 559 + mouse_db0 = derive2 { name="mouse.db0"; version="3.14.0"; sha256="1s0v0jndm29jdb7il853i9kx3mqnqviqwd2v1159l0y4fqpv6g1y"; depends=[AnnotationDbi]; }; 638 560 mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; 639 561 mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; 640 562 mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; ··· 671 593 nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; 672 594 nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; 673 595 oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; 674 - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.13.0"; sha256="08s5sf4gxf3dc0j7zjjmjvz87yh0z9a438mbdgki9q8snbi72mp8"; depends=[AnnotationDbi]; }; 675 - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.13.0"; sha256="0r0izn5cf0mikbzls37j1wavznpm23mhb316ph468hf8z76l4blm"; depends=[AnnotationDbi]; }; 676 - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.13.0"; sha256="0pwvwyfah8fhvaxdc8zkp3lp1v4mchhzr84r3hb0jx97icdvhafi"; depends=[AnnotationDbi]; }; 677 - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.13.0"; sha256="1m8dd1jqf6a6rnxs3hyd88njc96j7dhxf7zbrp8sfq3k2vpjssp5"; depends=[AnnotationDbi]; }; 678 - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.13.0"; sha256="1bzxl0frgjkprbcc65lzdivjpq0kygxyyxxafmf381lrib9x5hgz"; depends=[AnnotationDbi]; }; 679 - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.13.0"; sha256="1vzzgqjry4390x0mvcpxaawbngdbixbmyf6jrncibqmk43hvnxbi"; depends=[AnnotationDbi]; }; 680 - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.13.0"; sha256="0swhmwscnw1g0g5ilrgwqjyy01lis97i52scyb40d9nzjq5dp38p"; depends=[AnnotationDbi]; }; 681 - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.13.0"; sha256="1wfshrqq0n0avplgzq3gzamzfxsf7s0cccdcmnx14ygp1mfqmpfs"; depends=[AnnotationDbi]; }; 682 - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.13.0"; sha256="0ddi8m766cfvmchv5g4mbsbnvdb8g65mh7xy0q48r7q5ifx076v1"; depends=[AnnotationDbi]; }; 683 - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.13.0"; sha256="0nggkh2w1ms97ss193khbdyrv1lljfpwikadgcch4c3jhpcikhvl"; depends=[AnnotationDbi]; }; 684 - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.13.0"; sha256="0bwn29i2w6mqhk9qyig8vfl372psy50b1sz8n6ddy0hzmnr1s6ym"; depends=[AnnotationDbi]; }; 685 - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.13.0"; sha256="1jzz36pdq8xlj1mr4h4jw0mvd8gp30wzqz1jjbmp848gvy4xzz4l"; depends=[AnnotationDbi]; }; 686 - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.13.0"; sha256="0f638jwj2b89lplm0m50zldh1rp7hpypcjq73lcrwff89l6g1vyb"; depends=[AnnotationDbi]; }; 596 + ontoProcData = derive2 { name="ontoProcData"; version="0.99.9"; sha256="1axqhximb238h7ib7sd7g1n1in8969d263pjd362i0s1m4y5y033"; depends=[]; }; 597 + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.14.0"; sha256="1biz3c5zjc0vja77yrflkaalj7pf0mrjcdxiqvb7cgnyhajgpz41"; depends=[AnnotationDbi]; }; 598 + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.14.0"; sha256="0yi2zzgqwxfv7yp8n3mmmsnxzzy7q3zgckckbxwmj98gsizc2v9p"; depends=[AnnotationDbi]; }; 599 + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.14.0"; sha256="0igswc3ifwzi4vygy957j4936hpj0laalxlhnhgf4adq08g46l6f"; depends=[AnnotationDbi]; }; 600 + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.14.0"; sha256="1ji2gnwiprfsxvw0302lzqw4x82q47k0kb9ksxb0gi78x9wjxg1b"; depends=[AnnotationDbi]; }; 601 + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.14.0"; sha256="0asq3f3638ar59k3vjlq51wc0kcv5z3z8rx590gx3hpx84c5f8jr"; depends=[AnnotationDbi]; }; 602 + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.14.0"; sha256="1r9p3fsygw2v2mawzz7x012ww024qdw7riik78xhf5w0knsjxmdc"; depends=[AnnotationDbi]; }; 603 + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.14.0"; sha256="1pa2f748sssbbwfdizrf3brqdsdhp403k6kqs24a68ijm1szz9kj"; depends=[AnnotationDbi]; }; 604 + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.14.0"; sha256="1f0m8xmvvllv4d2dmbkqaplngmavj9jzzq1chjxjwb1bwn4l4r6v"; depends=[AnnotationDbi]; }; 605 + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.14.0"; sha256="18arc9x4lg8fblgraa6fdzc5gzidqvw1c22rv64c6gv0wdi3ixby"; depends=[AnnotationDbi]; }; 606 + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.14.0"; sha256="16pldxp326v2z5nifzisp0hssvysb4vdv6132q85xfclfc8zz517"; depends=[AnnotationDbi]; }; 607 + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.14.0"; sha256="0mnddv42ll0sc0zxf7hkgilslykbvfn7xgxg1g8qi57q2dmpwb6j"; depends=[AnnotationDbi]; }; 608 + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.14.0"; sha256="0iddj19k34v66jzk8q1khpw9wdcl3qdzdmhmzjhcxwahid22iwjn"; depends=[AnnotationDbi]; }; 609 + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.14.0"; sha256="046qv6y137nzkj8h8ripq41g60vs11m40hcdk7qd8ihirvwdg8s4"; depends=[AnnotationDbi]; }; 687 610 org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; 688 - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.13.0"; sha256="0nn5zc2vvzrwz49jvf4x14lc54ch3d9ykchzfz28jnxlmq2bx68v"; depends=[AnnotationDbi]; }; 689 - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.13.0"; sha256="0297yvg4l7vxqrmj18vyifsp7zaz7wbcwsbafqqjagm05lj6aylp"; depends=[AnnotationDbi]; }; 690 - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.13.0"; sha256="1z8x27885jg8grbbsmwn99ar95iw8i3rxj2byimc1754gvsq50vl"; depends=[AnnotationDbi]; }; 691 - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.13.0"; sha256="05wd3wawx1gjm7gx1zz1bdib6bdnhy7aafki1x7zi0yihvy1jsa0"; depends=[AnnotationDbi]; }; 692 - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.13.0"; sha256="0m4srfldbrcdyl0yrzh7j0m4ni7akbj839j0b26xkflaj2pikr8x"; depends=[AnnotationDbi]; }; 693 - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.13.0"; sha256="0ryhzf7sdknvcjkwzlb33vbwlwbip5jhggn2ap1psg2fcfbzqn5k"; depends=[AnnotationDbi]; }; 611 + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; }; 612 + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.14.0"; sha256="1xh3hdzb37baml9nvi22hy86js2iigkfwnij3dd368r35qd394xk"; depends=[AnnotationDbi]; }; 613 + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.14.0"; sha256="1p4pzd6dl2jwi9n0kkw5cfc8swipgh624aj1znznb5yc9zyf26sr"; depends=[AnnotationDbi]; }; 614 + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.14.0"; sha256="1cklqalaycalh689jks9nxizr2nd6ljqxvnn15pah48gcc1s727q"; depends=[AnnotationDbi]; }; 615 + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.14.0"; sha256="05s3qjvdxxni2s4ikcnbcnm3an5g0ch7yabdixz9z7qd5npj2wq8"; depends=[AnnotationDbi]; }; 616 + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; }; 694 617 paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; 695 618 paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; 696 619 pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; ··· 866 789 pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; 867 790 phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 868 791 phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 869 - phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.11.1"; sha256="0g7mn3wa9l9hpks828n82rads1ls5mjgh6dfgk3iw1nrl0ylws4v"; depends=[AnnotationHub GenomicScores]; }; 792 + phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.13.0"; sha256="0jq5z1af0f5jqazz46gvf3nnkrp91a6qzb96bk7fjdbvk5b3z0dd"; depends=[AnnotationHub GenomicScores]; }; 870 793 phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; 871 - pig_db0 = derive2 { name="pig.db0"; version="3.13.0"; sha256="1vj6h8nk0kxryjfgi2d5a708pn9q3r9y7dbqw893i0204ak0w0h5"; depends=[AnnotationDbi]; }; 794 + pig_db0 = derive2 { name="pig.db0"; version="3.14.0"; sha256="0m25d7sgzkivzdinfmr07jk51i2zia38g2ppbpvv3akp3sqykz8h"; depends=[AnnotationDbi]; }; 872 795 plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; 873 796 plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; 874 797 poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; ··· 879 802 primeviewcdf = derive2 { name="primeviewcdf"; version="2.18.0"; sha256="0qj3l2iabpl2d79pr258cbqar4hdpjkbwf829bnwrmabkaq92z48"; depends=[AnnotationDbi]; }; 880 803 primeviewprobe = derive2 { name="primeviewprobe"; version="2.18.0"; sha256="0kw04789ihxnw874qcdj5ypwj6npya2v3p893ahjwhys5wrivmqg"; depends=[AnnotationDbi]; }; 881 804 r10kcod_db = derive2 { name="r10kcod.db"; version="3.4.0"; sha256="073b5fb8dcqp5iq3h6p6250l91z6bzg72nzl7qva3jin33v96nmm"; depends=[AnnotationDbi org_Rn_eg_db]; }; 805 + rGenomeTracksData = derive2 { name="rGenomeTracksData"; version="0.99.0"; sha256="1b9g8409b0b6nrskzhm7zrr61la885b8vkp0v1qf72jclbq762ka"; depends=[AnnotationHub]; }; 882 806 rae230a_db = derive2 { name="rae230a.db"; version="3.13.0"; sha256="13mfwmx8zc519argmjd0bpgfr29bgbs9r2jln1idc9r51smqr9zy"; depends=[AnnotationDbi org_Rn_eg_db]; }; 883 807 rae230acdf = derive2 { name="rae230acdf"; version="2.18.0"; sha256="1f62gw18mhmrm4sqc3kazsm5zd4m73f99xzxbakqhvr5sbdqh28k"; depends=[AnnotationDbi]; }; 884 808 rae230aprobe = derive2 { name="rae230aprobe"; version="2.18.0"; sha256="0gkpaa53znqsmi3366wfmqz6q3d1cq3ymag09gkpdmssrp1rh9qh"; depends=[AnnotationDbi]; }; ··· 897 821 ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; 898 822 ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; 899 823 ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; 900 - rat_db0 = derive2 { name="rat.db0"; version="3.13.0"; sha256="14qmpa103ypqc9bz2aq8lb5nynf4kgdj6qzyf467kc41jj377c60"; depends=[AnnotationDbi]; }; 824 + rat_db0 = derive2 { name="rat.db0"; version="3.14.0"; sha256="0kv02lf2k4xxa25sxjhb8zra8zfgn1jflqcxvq2zkwaj0xdw9883"; depends=[AnnotationDbi]; }; 901 825 rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; 902 826 rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; 903 827 rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; ··· 905 829 ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; 906 830 rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; 907 831 rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; 908 - reactome_db = derive2 { name="reactome.db"; version="1.76.0"; sha256="1bj4nbaasb5bqdf5f090rqa43g4a9bidjq0mla9b8gm4r3m17xvl"; depends=[AnnotationDbi]; }; 832 + reactome_db = derive2 { name="reactome.db"; version="1.77.0"; sha256="10hlpjdl5qy9fyjffvh2rq8n5pb7iac8bd4jckfw94p07n8khqkq"; depends=[AnnotationDbi]; }; 909 833 rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; 910 834 rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; 911 835 rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; ··· 919 843 rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; 920 844 rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; 921 845 rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; 922 - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.13.0"; sha256="1iaw8r8d83l2qgg4w3iarwy8qvlplz8q5bvgk16cws8md69kn10d"; depends=[AnnotationDbi]; }; 846 + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.14.0"; sha256="1ym8w2jhpx64rv1vk3vgsc1dbzs2f6zw17gvw6j992xg5dq0ly0w"; depends=[AnnotationDbi]; }; 923 847 rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; 924 848 rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; 925 849 ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; ··· 937 861 rwgcod_db = derive2 { name="rwgcod.db"; version="3.4.0"; sha256="1k0fpnv314lx2jf3mm6xfqa3jx353sp42awxqys9byzhg9zyj2j3"; depends=[AnnotationDbi org_Rn_eg_db]; }; 938 862 saureuscdf = derive2 { name="saureuscdf"; version="2.18.0"; sha256="0vmm3fy10dzzmaq22ah4fb0k3fs1gdbhnsi8mxz7xgp27dcan29j"; depends=[AnnotationDbi]; }; 939 863 saureusprobe = derive2 { name="saureusprobe"; version="2.18.0"; sha256="0s5ma3hh7ncsi4dq33r3hwffk85x3gvjbm5cslppbsd0r0bjwkia"; depends=[AnnotationDbi]; }; 864 + scAnnotatR_models = derive2 { name="scAnnotatR.models"; version="0.99.10"; sha256="1mj23jyakx5bss4v8lb66ri67ajcxk9kzfp8ya8vsbhkx5npqgl4"; depends=[]; }; 940 865 silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; }; 941 866 soybeancdf = derive2 { name="soybeancdf"; version="2.18.0"; sha256="1dlwxdslm827661z6f4z2hwr7wpwqfzvizhvv63p86ll7l6gs3s8"; depends=[AnnotationDbi]; }; 942 867 soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; }; 943 868 sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; }; 944 869 sugarcaneprobe = derive2 { name="sugarcaneprobe"; version="2.18.0"; sha256="17zrydd8xd7m61bp750xlpcak0m3zgl0mvknz9s7mv2a35kp02ih"; depends=[AnnotationDbi]; }; 870 + synaptome_data = derive2 { name="synaptome.data"; version="0.99.3"; sha256="08j7arr8lhm17ikhxxg6f8vx45ixchvh33f2wla2486dvd160pw4"; depends=[AnnotationHub]; }; 871 + synaptome_db = derive2 { name="synaptome.db"; version="0.99.8"; sha256="0g7pah9q1ci0ykm1lf3gdssfxmc33qkc5y428wdb8fzirqh5csx4"; depends=[AnnotationHub DBI dbplyr dplyr igraph Rdpack RSQLite synaptome_data]; }; 945 872 targetscan_Hs_eg_db = derive2 { name="targetscan.Hs.eg.db"; version="0.6.1"; sha256="1p14jyhn1d2m6kww9vsb96263g8crnrff7qgyiz46pp9ww8mvxf4"; depends=[AnnotationDbi]; }; 946 873 targetscan_Mm_eg_db = derive2 { name="targetscan.Mm.eg.db"; version="0.6.1"; sha256="0ad6vxpwn9x82qcrpwcy1lwg0q3ik4vabxn01k6gwmbpvydz9cf5"; depends=[AnnotationDbi]; }; 947 874 test1cdf = derive2 { name="test1cdf"; version="2.18.0"; sha256="0nmkrp4b2p09pg8ndcnfv5y7w94xah6fa5pff60dp1s2s8dcgcr4"; depends=[AnnotationDbi]; }; ··· 958 885 vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; 959 886 wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; 960 887 wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; 961 - worm_db0 = derive2 { name="worm.db0"; version="3.13.0"; sha256="15kmk92fd30br04k6ykhn4nqk9p82r825lhgxz10ypqinkmvzc8l"; depends=[AnnotationDbi]; }; 962 - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.13.0"; sha256="0inx722iyilfwwff091xdvnyz8qnlyk8jdzdhil18vrdf71wrlfl"; depends=[AnnotationDbi]; }; 888 + worm_db0 = derive2 { name="worm.db0"; version="3.14.0"; sha256="0dlllq0m6k0kmndxri1y6csjk7wbl1a2b52pwx1rc76xxm6rcxb3"; depends=[AnnotationDbi]; }; 889 + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.14.0"; sha256="1g26c9z0h95yyr3mshjwlpsnyjpipjfka9pndl8zpri9vq9gr9ny"; depends=[AnnotationDbi]; }; 963 890 xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; 964 891 xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; 965 892 xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; ··· 971 898 ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; 972 899 ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; 973 900 ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; 974 - yeast_db0 = derive2 { name="yeast.db0"; version="3.13.0"; sha256="1jcpfrbqqc51q05j4pmrrwd7h6nwnmlj7jx7jnd55wdmx9pfjfzr"; depends=[AnnotationDbi]; }; 901 + yeast_db0 = derive2 { name="yeast.db0"; version="3.14.0"; sha256="0qvy276z44n04m08ixxvflv4ai11mmcxjgzn8zmw00k5ibzzg0a7"; depends=[AnnotationDbi]; }; 975 902 yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; 976 903 yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; 977 904 yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; ··· 980 907 ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; 981 908 ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; 982 909 zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; 983 - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.13.0"; sha256="0xzrzydc1dzjfx18dgj4vqz2lf9lbz71g967h6bvcf5diwg3765s"; depends=[AnnotationDbi]; }; 910 + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.14.0"; sha256="02b425gkhlwc8h6vfv1aq86w06v2zfxfpsy6pw0vljvvaqiqrzj0"; depends=[AnnotationDbi]; }; 984 911 zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; 985 912 zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; 986 - 913 + LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; 914 + LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="2.0.1"; sha256="004ajnirlqlw5zknhv456z5ziiig57qmcdp3w2cr7izdk2d97lbc"; depends=[LRBaseDbi RSQLite]; broken = true; }; 915 + LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="2.0.1"; sha256="0iazyqrqgc4g5kk25vzssfxjxfvp70mhnx4fpwcg73pfy4wizxjp"; depends=[LRBaseDbi RSQLite]; broken = true; }; 916 + LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="2.0.1"; sha256="1czhw53163cmamigzy30kwa0h3pid95qq47pf6f3b4sy8x3sd9if"; depends=[LRBaseDbi RSQLite]; broken = true; }; 917 + LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="2.0.1"; sha256="0xwzwhc1ksyp1k3xxd0mdk8bkw1npblwrpalnyd4awlx4lh6k8b5"; depends=[LRBaseDbi RSQLite]; broken = true; }; 918 + LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="2.0.1"; sha256="1nkgli39szcjh09ywn1a3zbj0k5pqng9ixaqkl0yhqqy626vk0w0"; depends=[LRBaseDbi RSQLite]; broken = true; }; 919 + LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="2.0.1"; sha256="0lvrjspmzjpx9q77lqwpqmr5jpqaqv8rjyfr3pxyv1d0kfdnqii0"; depends=[LRBaseDbi RSQLite]; broken = true; }; 920 + LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="2.0.1"; sha256="105nmhlg80jwljkpn73cx4lc4nsxadcl4pfbyl8pj1ppk1cdj1dz"; depends=[LRBaseDbi RSQLite]; broken = true; }; 921 + LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="2.0.1"; sha256="0p99lx34fgvknw6301r8r375w0mapsan7f8aqjd2jxvjaig2375s"; depends=[LRBaseDbi RSQLite]; broken = true; }; 922 + LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="2.0.1"; sha256="1hpw675m2y6nm3i3mvh9whxlaz5zpvz4wr55rha7yisxfsj6qq9a"; depends=[LRBaseDbi RSQLite]; broken = true; }; 923 + LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="2.0.1"; sha256="18pa9f16hn4awynbhmvrkdxdprr2dj0mip132sk1mfkxic2cf014"; depends=[LRBaseDbi RSQLite]; broken = true; }; 924 + LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="2.0.1"; sha256="18bk6p405cpws0ynh0q17w5fmriplmamhy1rds5rc6hf05lr2sb8"; depends=[LRBaseDbi RSQLite]; broken = true; }; 925 + MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="0f1qjngpshdpdg6i05qh8pmr56x4wvx29ism3vsid099ammnxdca"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; broken = true; }; 926 + MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.13.0"; sha256="1hhm0qla0av6fcgrf4wivwfczs7b6a473qswii2axpxq7srbsgaz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; broken = true; }; 927 + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.15.1"; sha256="1d33krs3xs0pa14gm7haiaglnlx5z41m6gx92gg8ckfpblyz49q2"; depends=[MeSHDbi]; broken = true; }; 928 + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.15.1"; sha256="195hs3x0sfs4s5kry452r0fhnq19ayv82j4dr1394zr104r17kb1"; depends=[MeSHDbi]; broken = true; }; 929 + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.15.1"; sha256="1kyjhnfv3b0jxdali2v1wdqd1zkl9vsf2z9ba6dkhlm1hghsnv63"; depends=[MeSHDbi]; broken = true; }; 930 + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.15.1"; sha256="1szzcnf5fwaqpj2ra2b1xics971lwg3rnzdria8j3yl705zxnl3g"; depends=[MeSHDbi]; broken = true; }; 931 + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.15.1"; sha256="1pgfhm5qhm9d7s0sr4iij7272m2i6y9di51r137mrmpc5fcc1mmx"; depends=[MeSHDbi]; broken = true; }; 932 + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.15.1"; sha256="117sz11lg3kl90v7bkai3acyvcxjggar8fpgyac99369pinkqikp"; depends=[MeSHDbi]; broken = true; }; 933 + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.15.1"; sha256="1hwhvm7ip3kjdb31glasixqzwja37352x70id18n2bfbjgq4x3r2"; depends=[MeSHDbi]; broken = true; }; 934 + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.15.1"; sha256="12dmbr6aynxyfg0cv5jrshj27rmk89apbpsg1zxf7cmqkkvq8bcv"; depends=[MeSHDbi]; broken = true; }; 935 + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.15.1"; sha256="1y6r6hillawafxgxvkcffg8bx125ra6b4f9cclcz1n3qzqfnjj0s"; depends=[MeSHDbi]; broken = true; }; 936 + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.15.1"; sha256="0d363769blvq0hm3yzbff007sn3sq8fb4gay8qgrcj2jrnnd4wp4"; depends=[MeSHDbi]; broken = true; }; 937 + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.15.1"; sha256="0g9m2y209gl6nyn05j4fznnh21raz8xwj1if7zb1aixxzykqi313"; depends=[MeSHDbi]; broken = true; }; 938 + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.15.1"; sha256="1z3id2838fd14x9nib931cmjb0x339hq1izdr3gq8kc4yfvl40r5"; depends=[MeSHDbi]; broken = true; }; 939 + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.15.1"; sha256="0fbg3sv5addw9ad586nyh0vbwfdnjzwqnqxa8jz8plpmjn043wl0"; depends=[MeSHDbi]; broken = true; }; 940 + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.15.1"; sha256="19hp0f0vqlzdqbn9qs839b8sflbcww02k7fzsmyzpqd38kvhwf2w"; depends=[MeSHDbi]; broken = true; }; 941 + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.15.1"; sha256="19jjdp5cq1pisgk7nxwi8cdzjk44bbh02fjy027f50i6dnj75i7i"; depends=[MeSHDbi]; broken = true; }; 942 + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.15.1"; sha256="0y53q8q1ca93ri6msnjzj3m6rqangidfvvchirgk9pa4k67dh534"; depends=[MeSHDbi]; broken = true; }; 943 + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.15.1"; sha256="0jsbncm9ggi63fjng8nl08bhzajgjrckfq2ngqbcnmf8p1gzg60a"; depends=[MeSHDbi]; broken = true; }; 944 + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.15.1"; sha256="1w47fmy9akwxxsvdx7d1s0qdzafxyghl6lh33cy5jcb4bj525635"; depends=[MeSHDbi]; broken = true; }; 945 + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.15.1"; sha256="0bq8r70vv55shfgdx94qiympk0vf9rf7xr467bps82ks0kklzr7v"; depends=[MeSHDbi]; broken = true; }; 946 + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.15.1"; sha256="1k5dfwm5fn4zghaphsjs0f7jzjcdcay1afm2c09qyh7xv9m1cpry"; depends=[MeSHDbi]; broken = true; }; 947 + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.15.1"; sha256="0idh5djnz1wwxp09xpjwac4dhz6kvwp1l0j92195b0xwv4n11pzk"; depends=[MeSHDbi]; broken = true; }; 948 + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.15.1"; sha256="0aprxgrlz7hnk31fr6vqpprahjn07r48dnva9gszgyp740mx1m1d"; depends=[MeSHDbi]; broken = true; }; 949 + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.15.1"; sha256="0wbv1f5bsb3xl8rj1qndb0n77rmg2s9m5nl2f95naqaf3hfypsmd"; depends=[MeSHDbi]; broken = true; }; 950 + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.15.1"; sha256="07zzwf4aqpkvjmbbvzc6bq662frxblsx4l0ljna70gr4xb218swl"; depends=[MeSHDbi]; broken = true; }; 951 + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.15.1"; sha256="1fls5b3w6n2n9vy4fsvri74f6r2qmlrx8vlrgqmb7plxdp35q0jw"; depends=[MeSHDbi]; broken = true; }; 952 + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.15.1"; sha256="0fphjwbxnymf30ccppjyfgwz0pv5n1lwzm7h05lppk7a7f8ys665"; depends=[MeSHDbi]; broken = true; }; 953 + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.15.1"; sha256="0921dxba9crqml8in0hwnwlzcqvjhhi94mllbmksp8cwka48rzs8"; depends=[MeSHDbi]; broken = true; }; 954 + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.15.1"; sha256="087pcpbskgc59c04bn3201d4agy9vsma0r1wsf60zxr3l491yn6v"; depends=[MeSHDbi]; broken = true; }; 955 + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.15.1"; sha256="0drqyd131l7vr9v899hjvva4d5mmv7fbhmflgz49i2iy3360xz32"; depends=[MeSHDbi]; broken = true; }; 956 + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.15.1"; sha256="0i3j3392d690xkg7cfzqnw0s09q8mpiq2wfpifkk0hbxnc5aahwd"; depends=[MeSHDbi]; broken = true; }; 957 + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.15.1"; sha256="168jy0v39j2fpy59s3dpz0xs3axmnc7kb1dv88b5j1xccymkd3gl"; depends=[MeSHDbi]; broken = true; }; 958 + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.15.1"; sha256="1ibbh07nczp75f0x2mnq5mnli6fgg7mn2aqk434l3iwjx686mcpj"; depends=[MeSHDbi]; broken = true; }; 959 + MeSH_Eca_eg_db = derive2 { name="MeSH.Eca.eg.db"; version="1.15.1"; sha256="1b16fqx56sl1ask5hk3krw2p7ph5q9wg78zygbd1pbx04q95469r"; depends=[MeSHDbi]; broken = true; }; 960 + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.15.1"; sha256="0p3gf9hwr3hrzlczwr7lhwxnl46iqfz66dvz38h7c02bjlpjjdjd"; depends=[MeSHDbi]; broken = true; }; 961 + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.15.1"; sha256="0wda4hkzwfvkn51fchzpwgc5p9964yyfjg8bpvk2331zx9lsvgs2"; depends=[MeSHDbi]; broken = true; }; 962 + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.15.1"; sha256="0d72haww3zi1x06qllwnlsrwkwivn6z8ws9nkrnb24vn3saxv41b"; depends=[MeSHDbi]; broken = true; }; 963 + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.15.1"; sha256="1xbwkxn351yhjbc529y4fkj366a3pnk1b8s3h1ys5w8czz3szfn3"; depends=[MeSHDbi]; broken = true; }; 964 + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.15.1"; sha256="1cgfwp8hk40af0d5rzi3vsmvx22jp1nwsgyld1mzkry2i8ilbzyj"; depends=[MeSHDbi]; broken = true; }; 965 + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.15.1"; sha256="1r2bnakd47gq95s47rywhak7csz77zphml0zfrchi189kh01prg4"; depends=[MeSHDbi]; broken = true; }; 966 + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.15.1"; sha256="1x3rjw2hvzxaq68abyh8b9bw1zizkrqxj6pgd5d6ggcl8l0x1fnz"; depends=[MeSHDbi]; broken = true; }; 967 + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.15.1"; sha256="156dc2vssa8x0a0985fhyx7h5vaw4d3ingz0s09181ai9fxqc1jx"; depends=[MeSHDbi]; broken = true; }; 968 + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.15.1"; sha256="0a3gdmpp9y6s6aw7lyh7j25dahgmkb0azg7g57073fqwhgivs2mx"; depends=[MeSHDbi]; broken = true; }; 969 + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.15.1"; sha256="1gil8g9h8qyd0b4qmqrk7dakvjqwlychzld0wv20z7hipqas975d"; depends=[MeSHDbi]; broken = true; }; 970 + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.15.1"; sha256="1p1f6vk1f360zx4wkzcyczi4p4x6mgf4pfrvhslz4kn6xg0cnm73"; depends=[MeSHDbi]; broken = true; }; 971 + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.15.1"; sha256="16372gs4nh9cr18xy4nzssjmdarxbkx7c6208s4vx6232mbc1azl"; depends=[MeSHDbi]; broken = true; }; 972 + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.15.1"; sha256="1557vn9sy1a2picwj27gkajqp8qlqza0yqf69czimd1myskdicps"; depends=[MeSHDbi]; broken = true; }; 973 + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.15.1"; sha256="1gi2v9x0jja6ambdljp9m11g6yhd3wcfcjblgx58i42ix5h5mviw"; depends=[MeSHDbi]; broken = true; }; 974 + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.15.1"; sha256="1vplci90jb1cihwbxqkynqk9frr7j09gh80q020dhm24f3rwlfqk"; depends=[MeSHDbi]; broken = true; }; 975 + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.15.1"; sha256="1fmwfmws100qmg3wy25qg0s36nk81rwf6b1csvqg4vfy9p0r2pdw"; depends=[MeSHDbi]; broken = true; }; 976 + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.15.1"; sha256="019ydfl6dqymn8yk2n101rdrmyv82ypcbvwmslimdhnlk3bzrj3a"; depends=[MeSHDbi]; broken = true; }; 977 + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.15.1"; sha256="1jadbca3c3xw24p8zvrd3q7ijjrrfjxkf1bw08ay3a9gazqyv0rh"; depends=[MeSHDbi]; broken = true; }; 978 + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.15.1"; sha256="028lw4xjd1v7afp1l0xizswciy1hxhllrf9ij328si5a0kb3dxwc"; depends=[MeSHDbi]; broken = true; }; 979 + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.15.1"; sha256="1hdk3s3ixh1haqp70ww547cbnwhllk6fhc4fgriidw0jivbkawx1"; depends=[MeSHDbi]; broken = true; }; 980 + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.15.1"; sha256="00hy436bbk7jza00dv2xgnbji3k72x405n88pgd8d9rgj7cmqvjp"; depends=[MeSHDbi]; broken = true; }; 981 + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.15.1"; sha256="04pprh5m431cpk4whfsiqb8fglda82jk4d06nhlz9k9nd5x9np82"; depends=[MeSHDbi]; broken = true; }; 982 + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.15.1"; sha256="1a0q8xyhfvjvdsxq5hgh255q3rg823l1b8nyswnkai3sl3hq3szd"; depends=[MeSHDbi]; broken = true; }; 983 + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.15.1"; sha256="0z4l55029lrmvysj26vn97c690yyhji46axvxsdjvzwp8llhwy3m"; depends=[MeSHDbi]; broken = true; }; 984 + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.15.1"; sha256="1h1ci6y0hjii1r6gp24y2m7qqn8d0r954swbc9crb0i2mfak7l1a"; depends=[MeSHDbi]; broken = true; }; 985 + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.15.1"; sha256="1rfxbfz72xazay0rszhjvxxqry532dx72kkp5vd0pi44536kly49"; depends=[MeSHDbi]; broken = true; }; 986 + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.15.1"; sha256="100fcybyv4lsnxj23ndchhn25i2bfppk6w0y2lfnrla1vn8p5nnp"; depends=[MeSHDbi]; broken = true; }; 987 + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.15.1"; sha256="1y5nh82hbwh7higzg0fv4rkvxl2p988w7aznygaq5z3g1q15l9sp"; depends=[MeSHDbi]; broken = true; }; 988 + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.15.1"; sha256="09vj1ix13kxyb330s69nnig07a7cwyz7nasvv5kv83cnc27df92m"; depends=[MeSHDbi]; broken = true; }; 989 + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.15.1"; sha256="0gmpcabxs0d61krhyllyrb92x0xgr67jv2wc8qbjv8m8vpiynnxh"; depends=[MeSHDbi]; broken = true; }; 990 + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.15.1"; sha256="05ybk27chnxf3mqvngfzlrmnlpjdraqzd0qcsj6zmhsyx6j20qh5"; depends=[MeSHDbi]; broken = true; }; 991 + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.15.1"; sha256="1rkc9gv9an0zan04qalmyvry380yhf2vx8scfvck9jwkq5x05w97"; depends=[MeSHDbi]; broken = true; }; 992 + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.15.1"; sha256="1nak2sz25l8mc3f60h84519wm7lb8iamj9116mbf4b6ybdp0k4gd"; depends=[MeSHDbi]; broken = true; }; 993 + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.15.1"; sha256="16j9wiv0lgik94yp7vqgcc5lykjynn07sbvvq2llcyvr6n3l3gwy"; depends=[MeSHDbi]; broken = true; }; 994 + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.15.1"; sha256="0j0ygcrfx2df2q597wkkiqg9264n2v7bsh3kfvra9ma3wdxqlipd"; depends=[MeSHDbi]; broken = true; }; 995 + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.15.1"; sha256="0dnhjs43v9q42w82km5vvs8p8zniljvskiv946psy2z8l27q6srj"; depends=[MeSHDbi]; broken = true; }; 996 + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.15.1"; sha256="1n3kmkqgb8nnm13jrhn6dzpjcqgddf7k68vsm52bkg7dh3dfcn8v"; depends=[MeSHDbi]; broken = true; }; 997 + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.15.1"; sha256="19waylyzyga4zqygar6509gq36a8z36fbpz55msb0zsin24s0y82"; depends=[MeSHDbi]; broken = true; }; 998 + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; 999 + MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; 987 1000 }
+410 -398
pkgs/development/r-modules/bioc-experiment-packages.nix
··· 4 4 # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix 5 5 6 6 { self, derive }: 7 - let derive2 = derive { biocVersion = "3.13"; }; 7 + let derive2 = derive { biocVersion = "3.14"; }; 8 8 in with self; { 9 - ABAData = derive2 { name="ABAData"; version="1.22.0"; sha256="1q4kl02f0dvbyqlsqhfj4m42vlsz6vsp9p1asgfsqlpbzjflc8r3"; depends=[]; }; 10 - ALL = derive2 { name="ALL"; version="1.34.0"; sha256="0qwbinc07s5y6d2vmlmbl4rrsbsxp5f6bndanpaamc5vc0rnydvc"; depends=[Biobase]; }; 11 - ALLMLL = derive2 { name="ALLMLL"; version="1.32.0"; sha256="175rxan8wgzqc3x8gscn9v3fpfidgi0wypzqw6d6r8gzf3a0h01n"; depends=[affy]; }; 12 - ARRmData = derive2 { name="ARRmData"; version="1.28.0"; sha256="1gqz5jbfh6k3pm52pggdgccp6ydp51wnlwys038jak15zjxk876m"; depends=[]; }; 13 - ASICSdata = derive2 { name="ASICSdata"; version="1.12.0"; sha256="0xprdz7g0xa0ha219c0jbvdf3k4vnqfilf3420s631h2fp7kcjg6"; depends=[]; }; 14 - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.28.0"; sha256="1gn5cb42iaj534ik80kci0qqxx38jwjnw1qcvhr4z91wa8qgzrl5"; depends=[]; }; 15 - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.26.0"; sha256="0g9i38hmzqyzg073p426q2kha67g62y07p2756ans8cmyfsrn9y9"; depends=[]; }; 16 - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.30.0"; sha256="1g7xc2qldqpc8pg07l91gv593xm8rffygdwy27h5v1xz97wm8p18"; depends=[]; }; 17 - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.30.0"; sha256="0998584mz6ggl0j84920bwc69f7i6p24i6ki3c6dhqjjkw7bg0xf"; depends=[]; }; 18 - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.30.0"; sha256="15zx9bf2cqv3drf9yi6rkdapwk1n7i5iwymj72nfk8qn3k8hn4x0"; depends=[]; }; 19 - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.32.0"; sha256="0042i6ldqdm2p9lr8cyzkf1638ka5ycmzvjxmwhg0mgbrzqs9d57"; depends=[affy]; }; 20 - AneuFinderData = derive2 { name="AneuFinderData"; version="1.20.0"; sha256="1kp3y20zhmsgy3yq02sd0ascqgg3m83whrld3dw6sdbibfxdr0wc"; depends=[]; }; 21 - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.22.0"; sha256="0bcmyxl1qidb5fz2s27ljjlf4f7kq5ii0287sapvq0wf1ll1z6nr"; depends=[]; }; 22 - AssessORFData = derive2 { name="AssessORFData"; version="1.10.0"; sha256="0vnq5mdds7ikyivn03yvfrzwi8aqn4k1pg72m3n6klm3dlfmf3vn"; depends=[DECIPHER]; }; 23 - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.30.1"; sha256="17a3rrl1lqm64cwjaw0vx68gavwl21n5qfnk5lsx7b05jiw2g2ly"; depends=[beadarray GEOquery limma]; }; 24 - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.0.0"; sha256="18glvbpq5anbciw6bdca7z8fcd2yscq0bh83r0ynsnmgi1an63px"; depends=[ExperimentHub minfi]; }; 25 - BioImageDbs = derive2 { name="BioImageDbs"; version="1.0.5"; sha256="1pdzaql62kb7xcjjv5az9xpwfr035cq32lvq7kadlakcibrgsfah"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; 26 - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.12.0"; sha256="0rj6if7l84lanjms3w86iwcmxgq3bfvksvlahdzkdw44qgyqlj13"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; 27 - CCl4 = derive2 { name="CCl4"; version="1.30.0"; sha256="15naslzbccdx0ibmlyxjmyqs556ay35cadc4224d5cn7abid0yp7"; depends=[Biobase limma]; }; 28 - CLL = derive2 { name="CLL"; version="1.32.0"; sha256="0x5y7k683h5kjfiknjfxk6pw5d577ranl9ijqq31fzms0r3lvnq0"; depends=[affy Biobase]; }; 29 - CLLmethylation = derive2 { name="CLLmethylation"; version="1.12.0"; sha256="1j8a9f7kg78dc6sibrl66yyh96w6h7lzqn8y2hvq8n8w4n2ki7sb"; depends=[ExperimentHub SummarizedExperiment]; }; 30 - COHCAPanno = derive2 { name="COHCAPanno"; version="1.28.0"; sha256="1g74w1yymvkx8yb85apfzgfl11r90rga9pniw7rf9lg0bisl6662"; depends=[]; }; 31 - CONFESSdata = derive2 { name="CONFESSdata"; version="1.20.0"; sha256="0y66bwgspxrvypbzj68749sq08fxc1z1f5ma2hjq907igzkw3x8c"; depends=[]; }; 32 - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.28.0"; sha256="0nz96nz8f9ca88p844yr2hxhx87x9z55fbd5z8l9ribs1pcm6053"; depends=[]; }; 33 - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.28.0"; sha256="1yksryh96pljridizb33z956z0k47vgb84l6r44wdzq3vsjxmrgr"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; 34 - CRCL18 = derive2 { name="CRCL18"; version="1.12.0"; sha256="095l0j0vhsrj97gyzqyk97c0j555ix7swiqgjmcahm2flqgxnksw"; depends=[Biobase]; }; 35 - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.24.0"; sha256="0m0yzr4iq3c662bj19fc5aahkxs4g5s5v9vjyz7jq5ivqyrxfhh2"; depends=[Cardinal]; }; 36 - CellMapperData = derive2 { name="CellMapperData"; version="1.18.0"; sha256="0xm2rh7s2gwgid9fbzbph2snm6slgg9sa4r99b7ai317qfi2x86z"; depends=[CellMapper ExperimentHub]; }; 37 - ChAMPdata = derive2 { name="ChAMPdata"; version="2.24.0"; sha256="1i7c8m4qqblp9cj8ndiinma6xszaq5ncg3d468n9gi0nw1s9qqxv"; depends=[BiocGenerics GenomicRanges]; }; 38 - ChIC_data = derive2 { name="ChIC.data"; version="1.12.0"; sha256="08gxdzpi7d9zycx7vp9y40bpw4ljkym9j5p7b3dxqw1b9s1vwmaa"; depends=[caret genomeIntervals randomForest]; }; 39 - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.30.0"; sha256="1h3df9475yglgf69f8xyb36cxm7gb14kai3c2jvdwnhf9y7g30hf"; depends=[bigmemory]; }; 40 - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.16.1"; sha256="120z13sfhnd6rdx99ssfydnizx032yviysfya04dvvlynbpsaf1f"; depends=[]; }; 41 - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.30.0"; sha256="0v45yy0vpcrba3vmjsw9n64c7klzpky5k121ydf6g17msk5vynr6"; depends=[affy hexbin limma qvalue statmod]; }; 42 - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.8.0"; sha256="0ggvbml8rmsn2rmp61j2q6nvhgqn9p99lx02avflhyas4rzlslh3"; depends=[]; }; 43 - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.28.0"; sha256="0jkqcppnqzj7kl7k74nbc3qzynbwn5sh4fivirs9znvl6gsmn6vr"; depends=[]; }; 44 - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.10.0"; sha256="004k5rcyz780gv1y6r3d661pm1xvrjh1hry53x1zy0gd5z8slvz0"; depends=[ExperimentHub Rdpack]; }; 45 - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.24.0"; sha256="1mx7ia8aca9gxzgk6hds5hya2pix2wwxwhvj5h8qq9r0z5a3g4vl"; depends=[]; }; 46 - DAPARdata = derive2 { name="DAPARdata"; version="1.22.2"; sha256="135kdn2rnj5bkdj49k08daidvm4h0zgdc9rqavwjpjx4wnddpdzp"; depends=[knitr MSnbase]; }; 47 - DExMAdata = derive2 { name="DExMAdata"; version="1.0.0"; sha256="0brw2qspvgpv149kkwv30cj3lyyv7pl00bk801yga2xv3mi4hl5f"; depends=[Biobase]; }; 48 - DLBCL = derive2 { name="DLBCL"; version="1.32.0"; sha256="17irfvdins7cb1kinbf3x0cbmjd51dspz25fv1vbv7531rspwc3b"; depends=[Biobase]; }; 49 - DMRcatedata = derive2 { name="DMRcatedata"; version="2.10.0"; sha256="1nxpxh5pxl4rv9m62xia6c969jzpkc4viw7dfz89fxqdmk1sfx5d"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; 50 - DREAM4 = derive2 { name="DREAM4"; version="1.28.0"; sha256="18wbgrlax63kaqbrwr4gl3pid1xwdp6z9dcvrxyp9gx099ipw7ww"; depends=[SummarizedExperiment]; }; 51 - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.28.0"; sha256="11l3rq59i49p3x9cl3x7k17hv57vijrjingap7hhsrjg0jgqk25p"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; 52 - DmelSGI = derive2 { name="DmelSGI"; version="1.24.0"; sha256="1x7whi3r5dn4shndc9cvxy89j79gyy1pvjdni3g5l8qgyd7baxhg"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; 53 - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.30.0"; sha256="1mqr1kmyh23sn50gj3cyljsmbr5fqkips5gbmkkcmkdcli3jz8jz"; depends=[EBImage]; }; 54 - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.2.0"; sha256="0nkpcpwfc8cmyfklwfa1zzvx58npyfp07j4pk5q26wp3ly02y80i"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; 55 - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.28.0"; sha256="1h4x1gisl26rknmba00ygv25s8rxfdlxk32mdf4n2z5q68nsl7pq"; depends=[]; }; 56 - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.10.0"; sha256="1lbgznbllpi23lf5ap58fr89y5x2m54k3wdy6myv62336jk7m8w5"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; 57 - DvDdata = derive2 { name="DvDdata"; version="1.28.0"; sha256="0gh4h1zapw8b0i3jwcnwnhblzqw3rsb0ah7wmsmqv0mzmimvpasc"; depends=[]; }; 58 - EGSEAdata = derive2 { name="EGSEAdata"; version="1.20.0"; sha256="10lqni9q1qivkzlcy5ylq7z4n3rqm5x97i369rfnybsb55gpqqi9"; depends=[]; }; 59 - ELMER_data = derive2 { name="ELMER.data"; version="2.16.0"; sha256="0w0zbj4fd1wkrqz7xrm3jqdhf35dbyybx71b595rcblx1qw9q4k7"; depends=[GenomicRanges]; }; 60 - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.30.0"; sha256="1s1m9r34qhsy33cl7gl6yk9rpd4k6ms25mnd5dfdkabpx537sa7c"; depends=[GenomicRanges rtracklayer ShortRead]; }; 61 - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.28.0"; sha256="1zpq5gnhqpbf6wm7s4kijjd64sf81i38n4sjq7sk7f5blijl64gi"; depends=[]; }; 62 - FIs = derive2 { name="FIs"; version="1.20.0"; sha256="109wp4yz37j43xas5dh1mcyz8zhvchrla7lhkvpy4jyxbk2z3pvi"; depends=[]; }; 63 - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.2.0"; sha256="04gi5rqbz3k1v8cl8kfhx1jmby6dk8qhkwdpfasyxm7xd1ific78"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; 64 - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.28.0"; sha256="1sg2ljgpnghcf1lhpfs5qypv44pv5fqg6b0j98n5mn4sxyrr7ckl"; depends=[Biobase gplots limma VennDiagram]; }; 65 - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.28.0"; sha256="0i5k2z2aggicq3kbjyk8qcg876slfk1157vw3ld6vhxcfr037dj1"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; 66 - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.30.0"; sha256="0cxxcsxczf01wn8qhbd1agzfw9ga8jkqwpbg06cyhpa9q7ljnz8p"; depends=[minfi]; }; 67 - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.10.1"; sha256="1cycd37hqqpnx66b6hbl2c75k4ychc92r7w7ib5dxc458n21wyby"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; 68 - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.20.0"; sha256="0456w9x8r8z4g549n5znzd4cgbfkg6n6i3wkiwarz7mncgz6hfla"; depends=[minfi]; }; 69 - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.8.0"; sha256="07bzpcm8bwj61jxr09p11d6f595r0z5b0yr04wq85pgjyrhqvixp"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; 70 - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.18.0"; sha256="0gg6prd8jh7a84nlv9d60rrjxhdwv93j1kbsvwwp4bw2mpd54r1m"; depends=[minfi]; }; 71 - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.28.0"; sha256="0m9jgiwcysk3rv3wr4m887lzjlqdmn78nzr25x4qi4n2anbl4l37"; depends=[minfi]; }; 72 - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.10.0"; sha256="14h6j8g01ss9jrh5bllwly8ck115hazl89xb7n9agsyn5ary13zb"; depends=[]; }; 73 - GSBenchMark = derive2 { name="GSBenchMark"; version="1.12.0"; sha256="08d4qk1qsimqx1m4dh4cl0m73lf8wpnr9fnx1r5mk0znq2rvr621"; depends=[]; }; 74 - GSE13015 = derive2 { name="GSE13015"; version="1.0.0"; sha256="05jm20xga65lc0qf61yv82k18vxxw95s2jmfvm1ibxhcg0a1p2kp"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; 75 - GSE62944 = derive2 { name="GSE62944"; version="1.20.0"; sha256="0b9vjdal8bp7qr9wqy163idw2lijwir3wnhdaalyfag9pmml5r3v"; depends=[Biobase GEOquery]; }; 76 - GSVAdata = derive2 { name="GSVAdata"; version="1.28.0"; sha256="1qv794jnrb48c1ad2wc8kxs9qzjj8k8dy3h2khxrhmc3zw0npawx"; depends=[Biobase GSEABase hgu95a_db]; }; 77 - GWASdata = derive2 { name="GWASdata"; version="1.30.0"; sha256="17lqa6k4qj5j7afbh2fnllpqbmzxh9avqh0pg3lh0cxmpyizdkap"; depends=[GWASTools]; }; 78 - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.0.0"; sha256="1jn7aixf3by1ygd5yhqw68r6d30zj5y2rr6dpj0wmgpp0jlnxrsw"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; 79 - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.20.0"; sha256="1wk7hx6x0501k0ld2cnjf5mvjw8kf8vr23fwrfxwi2i2l3ff1pg8"; depends=[]; }; 80 - HCAData = derive2 { name="HCAData"; version="1.8.0"; sha256="11dwnl66kyhmc9y81h8bh4pvcfa75wkhqkkisl2xm4f55ddlzlm8"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 81 - HD2013SGI = derive2 { name="HD2013SGI"; version="1.32.0"; sha256="1zb3vx7f5zs6lxlhappiiw5cgl0adiy69d280cgqph7v16fizz9f"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; 82 - HDCytoData = derive2 { name="HDCytoData"; version="1.12.0"; sha256="1l03n92i4jdfk73aw39750vc1p7x1ikl8z49v8zdg3pmk575yzw7"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; 83 - HEEBOdata = derive2 { name="HEEBOdata"; version="1.30.0"; sha256="1458b5dzdm1mq2hjblwkzy37s2yh1p3w68ya89ir60vyvzbss1kg"; depends=[]; }; 84 - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.32.0"; sha256="0r62bfsamh1i200r36a0dq1lw7p92l6h8mig8g9z3m2382cyaqch"; depends=[]; }; 85 - HMP16SData = derive2 { name="HMP16SData"; version="1.12.0"; sha256="03lr3gqshifa75xwmlbcpllplg2vjdxwbb24ycrzwjjgg14gcynq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; 86 - HMP2Data = derive2 { name="HMP2Data"; version="1.6.0"; sha256="03dgji3x3iczdig8hvmgfhqhynkdj6nc613d7n7lmzn6flwfyx0k"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; 87 - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.12.0"; sha256="1mrwqgx97bhff0cfdp216f2x77fid319ykk47yl4z53lmbdkd0iy"; depends=[]; }; 88 - HarmanData = derive2 { name="HarmanData"; version="1.20.0"; sha256="15x50q5k72djhgdn53x9ch37b8mnaz7x9ps8rg29znfx0ckb6i7x"; depends=[]; }; 89 - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.14.0"; sha256="0r8jawshhq3jb3fx4rvxbvbgj5xgh4cffdlyf5rcr3q40xb9rbzj"; depends=[ExperimentHub]; }; 90 - HelloRangesData = derive2 { name="HelloRangesData"; version="1.18.0"; sha256="1bcrzwakrc90d2q3hc20bqjqr9ssd2fxr1all7hfi3mx6fk9mi80"; depends=[]; }; 91 - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.12.0"; sha256="1nxpdj7bzr09y4gsj8a3mkbj36z8szkg15wxs045hgg2xyik2c82"; depends=[]; }; 92 - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.28.0"; sha256="12rmw0mv43w3kxc5h2d1np7ix9nmvw85lp5bc8phrd78nsbfpkyy"; depends=[]; }; 93 - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.4.0"; sha256="0cg1f1wkhr5ndd6hm9hhs3q4jx345a93zqylvv3casrzjcz0zp77"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; 94 - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.28.0"; sha256="1257dq4kfa3sdiz3lw6icvfi0q3y6k12cy1l4j0vgq3mcxw6dha2"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; 95 - HumanAffyData = derive2 { name="HumanAffyData"; version="1.18.0"; sha256="1c4kik10klfmvj5rc95ldyn58ara25w6bw5ymmgvympsql2nbj2v"; depends=[Biobase ExperimentHub]; }; 96 - IHWpaper = derive2 { name="IHWpaper"; version="1.20.0"; sha256="0n4l01r8pmsyfi2dc7nrc4gx7r9y8lsbi2g0nifgdkj6cj2q0k4f"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; 97 - ITALICSData = derive2 { name="ITALICSData"; version="2.30.0"; sha256="1a8a8pb4fpzkb16rx23shx0zqqxggp5vk7dacy69z29cwih6nxc0"; depends=[]; }; 98 - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.28.0"; sha256="0f19gy2k1kx5cv4glxgzn9sns465m8ml5wlsdvgmhwhbvx23qybc"; depends=[]; }; 99 - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.30.0"; sha256="0f0h82yp3l1fglrqd2z1k2n5sc706ivn7n7sacx9s31ybsym2bmm"; depends=[]; }; 100 - Iyer517 = derive2 { name="Iyer517"; version="1.34.0"; sha256="0nsfz0k8ib6033g8v4lk6iwfdjdsm1jxq62s1k6sviqa0sgfdryz"; depends=[Biobase]; }; 101 - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.28.0"; sha256="031d4i9agb7kpa0cmqkc0fjhxlpkm7ar674pf1lawq5pyp2vb5c6"; depends=[Biostrings]; }; 102 - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.20.0"; sha256="1m6h5w18rm6b4jhay03ra4h5vq0fjb8zwbz5d30sfjlxxn7d0hmh"; depends=[]; }; 103 - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.12.0"; sha256="00j31za752mwcz75wgd2fv8pnrpmvjlhw2x59vscn0i9vnmf2wx0"; depends=[Biobase BiocGenerics]; }; 104 - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.30.0"; sha256="1lgv2ykqg4zr05yhihn01y1py86f7k2n0zih8pyjjd59jmsvinlk"; depends=[Biobase BiocGenerics]; }; 105 - KOdata = derive2 { name="KOdata"; version="1.18.0"; sha256="1qmrh5p83kcy8f5n6bf4lpj26mw4mxw2zj49bklfdcbpkshyfr5y"; depends=[]; }; 106 - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.0.0"; sha256="0h3x2zppfqwa9d2s7zs1b04gm9hl09mf68gy3g9by9z3g8p9fs97"; depends=[ExperimentHub]; }; 107 - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.30.0"; sha256="08g6jdivnmigcn6gy6088g9mm0xrvzwb2y6ll389x7z4f55nlsyg"; depends=[IRanges KernSmooth]; }; 108 - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.24.0"; sha256="0jpdqfp7n1f8iar54nv4vlssm25wbpdk2r0krax6vg6cfiy1vp56"; depends=[methylPipe]; }; 109 - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.28.0"; sha256="1isj8mfivaaddzv4bwmzj6rv4mjn9ng8yx200xlyhlyarasdpg29"; depends=[]; }; 110 - LungCancerLines = derive2 { name="LungCancerLines"; version="0.30.0"; sha256="1cb7hyvf40yzaa510024jr9awqhn6cgz2cynqzc0kh8l84dcndsn"; depends=[Rsamtools]; }; 111 - M3DExampleData = derive2 { name="M3DExampleData"; version="1.18.0"; sha256="09a2yix4pb2wjwdz23swwm7j1k4l1n71w59j61ykd37r2qnck2a1"; depends=[]; }; 112 - MACSdata = derive2 { name="MACSdata"; version="1.0.0"; sha256="0ghplkjm4cmviajcmvjphyqycd84fqqpzj6jzpfnwv8znamjfwld"; depends=[]; }; 113 - MAQCsubset = derive2 { name="MAQCsubset"; version="1.30.0"; sha256="1sq3v1sb0snlmlks0awlksqx09xjz86affm76wi1hhcpga5r8w9g"; depends=[affy Biobase lumi]; }; 114 - MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; }; 115 - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.30.0"; sha256="0imhd75bwjyxgdbp9da0b2gqclwww7xrsbgqqpa148997il9nfrf"; depends=[Biobase lumi]; }; 116 - MEDIPSData = derive2 { name="MEDIPSData"; version="1.28.0"; sha256="1qcx5aj8sw5rlfxnqgdwvx2ds2dz6vg51ci97nbxx4af67xvahin"; depends=[]; }; 117 - MEEBOdata = derive2 { name="MEEBOdata"; version="1.30.0"; sha256="07wq7gslhrmp0n1hii3fyni63rd0cnry0rqrya6ciqa06wnrnnaj"; depends=[]; }; 118 - MIGSAdata = derive2 { name="MIGSAdata"; version="1.16.0"; sha256="0hhs0kmcsxh80yvs0vgs41hgvjkcrjr7v56fqyvxgd43r944q156"; depends=[]; }; 119 - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.6.0"; sha256="173hi1s6g3n6a8ykw6lll2sc7rph1l7pfw4hyssh6fyn5pp0jxi5"; depends=[Rsamtools]; }; 120 - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.28.0"; sha256="1qa8w99n53k8cvz2iv98q3jcbswdngkjj3crvv838fdxngm04l2v"; depends=[]; }; 121 - MOFAdata = derive2 { name="MOFAdata"; version="1.8.0"; sha256="1imva6rlh781yd0ngby8qil0pc15i1pajg2fxwf8z6m0bwbxmqwz"; depends=[]; }; 122 - MSMB = derive2 { name="MSMB"; version="1.10.0"; sha256="0pbfix742qslxwvpk0ibvhzmbbshz364p2kvj58hnd06brx2glxn"; depends=[]; }; 123 - MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; }; 124 - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.12.0"; sha256="0v0k6s4jyk3z1v3yrin00fdchid68p0x9knvgr92mwdjj7yywd8h"; depends=[]; }; 125 - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.12.0"; sha256="17rcxfsjxbq50flh6w9i01abl6iw9wp35r9qibqkdm9v3pswvkzc"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; 126 - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.12.0"; sha256="1iww2z2p2ycc2mjpz9m1kn80jhwf8z6vsmv01n3143xg2y9vyvww"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; 127 - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.12.1"; sha256="1f4b10bzd7q3n41ihh7rhfwa1i4q8bmikd3h1kb0vjdpddyavi0i"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; 128 - MethylAidData = derive2 { name="MethylAidData"; version="1.24.0"; sha256="164p88vmwdhw4x1213qq17szrhh3x367d614l0dq1906yyqmpprm"; depends=[MethylAid]; }; 129 - MethylSeqData = derive2 { name="MethylSeqData"; version="1.2.0"; sha256="148yjqgkv43906cww9qmjlmi22mklabxbkr9pdg9phq6lrvwj335"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; 130 - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.6.0"; sha256="1ljmbn3ax33npvv440ifkm7x9wg9jmakixr5hxx9h6v1q96jnrkb"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; 131 - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.0.0"; sha256="1r3f3nidgnm86f350d8yff82z4aibspkv0qyvx5mmnna89694nib"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; 132 - NCIgraphData = derive2 { name="NCIgraphData"; version="1.28.0"; sha256="08f400dmbbccgrgzib6808q6543bq9r2sji5kpj2sra671kfb1f8"; depends=[]; }; 133 - NGScopyData = derive2 { name="NGScopyData"; version="1.12.0"; sha256="1xmqrwd8g71j6zv8nqn1c185qplbllj7y087hix15ippyvz5986k"; depends=[]; }; 134 - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.2.1"; sha256="1jrr0a1kgsb39b8bxjz15yhx5gzq29076pxz2dcnijvlhzhxlby5"; depends=[ExperimentHub]; }; 135 - NestLink = derive2 { name="NestLink"; version="1.8.0"; sha256="1g3klrwjzfgm6yh5awfrp07nf8kixlnl7hvcr3yxxhqvqxfqyixr"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; 136 - Neve2006 = derive2 { name="Neve2006"; version="0.30.0"; sha256="1ckrkakidfmm0aj3xs2v6az7129rqyz6s8yzqrm03w0d4kpzlan9"; depends=[annotate Biobase hgu133a_db]; }; 137 - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.10.0"; sha256="0glq1y90kchcagbn3yzwymvqh2c4f5b0d7w193k8drx2lh09fwj5"; depends=[MultiAssayExperiment]; }; 138 - ObMiTi = derive2 { name="ObMiTi"; version="1.0.0"; sha256="0vl2i7js6z6jhz2lm9s78lnz7r2p2pk40w1pmg6vqk0lbp50fwj0"; depends=[ExperimentHub SummarizedExperiment]; }; 139 - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.14.0"; sha256="01k050znpzf49dsim85q6rc05ln7qlxpy3pw22ax27h46vp6xvv8"; depends=[rJava]; }; 140 - PCHiCdata = derive2 { name="PCHiCdata"; version="1.20.0"; sha256="013sd0mqphpmlfbxsrrqq4vvbq8w66v10mngaw7fyc99h5l33ah3"; depends=[Chicago]; }; 141 - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.32.0"; sha256="1hnnacsyas98jfnps6cfid3gdqqx6lc9rpw8adfyf0b8v3bdn4sh"; depends=[affy annotate Biobase PREDA]; }; 142 - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.26.1"; sha256="0s9a6qixfq2jmx5nv7q8pa6c9mlscapkjh069jf1b37891shwl32"; depends=[PWMEnrich]; }; 143 - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.26.1"; sha256="12bnmdlw4whqls4ply5jhkg0aq6dam4160xl7xaabhgb6wiz3m92"; depends=[PWMEnrich]; }; 144 - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.26.1"; sha256="13822jxvc846s7gmzd47vlza2pz061954w44pspmxcjrq6r2xvy0"; depends=[PWMEnrich]; }; 145 - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.20.0"; sha256="0mcrfj80nb5ipi58g9a3dgka3sj6wrrc9ax93mqw584cqs788n4w"; depends=[]; }; 146 - PathNetData = derive2 { name="PathNetData"; version="1.28.0"; sha256="1y1ln0zbnjh4kmbhphnvcifrw1lazrc4kci6gi07mwny3vpac6f4"; depends=[]; }; 147 - PepsNMRData = derive2 { name="PepsNMRData"; version="1.10.0"; sha256="0bms0zin8p5znwpwq5ipcpj03a71zc9ihw9h5svqkx0hqax06x1k"; depends=[]; }; 148 - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.6.1"; sha256="14427azqb8cra7fa33fx69qkk5xgal71hdhnyya0lls3cpxv91ca"; depends=[BiocStyle Biostrings ExperimentHub]; }; 149 - ProData = derive2 { name="ProData"; version="1.30.0"; sha256="0gh1f5smanp0wg3z4bc6rxqkvhi11jm3xxhyz3xikjy40qqnykjp"; depends=[Biobase]; }; 150 - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.18.0"; sha256="0vv5iph4qcci1zzl7946l47wgydfxv1nxqkqljx1bzp8vn64fbh1"; depends=[CAMERA LOBSTAHS xcms]; }; 151 - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.22.0"; sha256="0r98853g1ph1by25fna8pi4hrhdz9xvkfq3bvx5fwwbg5hmc8wnc"; depends=[QDNAseq]; }; 152 - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.22.0"; sha256="0sk90ipmgrn63f8c5sbmnafzwlra36adslg6si0dmrgkvp3disdq"; depends=[QDNAseq]; }; 153 - QUBICdata = derive2 { name="QUBICdata"; version="1.20.0"; sha256="1665dymyglwyz7631c1qfq4wnmg5zm2q7akd36w7fhjkxcdhmj29"; depends=[]; }; 154 - RGMQLlib = derive2 { name="RGMQLlib"; version="1.12.0"; sha256="10k7jmhgv4asmidb82a6lzmhlxqvh9fr6w1ipsif6ccaj626m1nf"; depends=[]; }; 155 - RITANdata = derive2 { name="RITANdata"; version="1.16.0"; sha256="11cixvs9rrhklly36v93kx07wv6nknjdn0h61na0jrjdjyc1s4q0"; depends=[]; }; 156 - RMassBankData = derive2 { name="RMassBankData"; version="1.30.0"; sha256="0xiaa4gkrrazzsrg1czd9kslrqayf9qlq8a9kp1mx67whb2wfigw"; depends=[]; }; 157 - RNASeqRData = derive2 { name="RNASeqRData"; version="1.10.0"; sha256="046a0r4nqsh1kl88fw079ppavs3nss050mnr3xvg2256b4pflhd4"; depends=[]; }; 158 - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.30.0"; sha256="18bwr7r7xdp6ygabsvgp44d8rdb1rrds05in4rj84lm34rjzcwig"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; 159 - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.6.0"; sha256="15pnk9c6b3zjr1hck62z0ljpdb7y64kzh0xmvanlg5lw38spihn9"; depends=[ExperimentHub ExperimentHubData]; }; 160 - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.30.0"; sha256="05swvszzcjr89d30v59yqp3vm1n6qiy36497ppvhcnwz471as96r"; depends=[]; }; 161 - RRBSdata = derive2 { name="RRBSdata"; version="1.12.0"; sha256="0ikjpvndwwin88qwhnrmfk9bcj50jfyzl0am30269ihbhb5pdrjh"; depends=[BiSeq]; }; 162 - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.20.0"; sha256="0fg1faahvyl1fcf4baic8b6irf7gzg2xmckmap0c6026wvl930n1"; depends=[RTCGA]; }; 163 - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.20.0"; sha256="1h1a1dqh701nwfdkifv1lxnfjkzszdllhpgl7kbhdzwwj3n35qwk"; depends=[RTCGA]; }; 164 - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.20.0"; sha256="0833kjzclk5ddmgsm0hcjjl9n1l9m4vf89h1snh0igqg73z7mvrs"; depends=[RTCGA]; }; 165 - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.22.0"; sha256="1paldg8wim6d4xvmzxyickzm28haz5z6h9g7k5h6s9wiqw3r0q36"; depends=[RTCGA]; }; 166 - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.20.0"; sha256="07jam3krlwdmsl5xk45qrv60gmkq1p5ra9jxrzi9iyf604x7591f"; depends=[RTCGA]; }; 167 - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.20.0"; sha256="02w438dlsvdzpa4myywhwzsczhw86lx43mw3w3m2rwgakfv1ayan"; depends=[RTCGA]; }; 168 - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.20.0"; sha256="1w4j4kh2c545a0jl0mdqn2fj3nspmalgf9p8693nayjgr4a5ryx2"; depends=[RTCGA]; }; 169 - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.22.0"; sha256="015qc579kn7640cc1p09ci67xn3kg3q9p783h949z0fdqfl90ry8"; depends=[RTCGA]; }; 170 - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.22.0"; sha256="1mz6c9s2q1zp8i1234svca4133q2l884p4qr7yg512qyrn5jklrh"; depends=[RTCGA]; }; 171 - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.12.0"; sha256="1mx8f9vb8qyrag59mhsria193pgmk7m56b4z53lsn5vxmp42f4yn"; depends=[Biobase]; }; 172 - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.12.0"; sha256="1bv3z1g2xabdh83zk5xa9h5xrgv4cf28di0syv63xgndqsn70vqv"; depends=[data_table]; }; 173 - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.6.0"; sha256="0n1p4svxhddvb4m83v9nhdgwafa0n392625kaqvz2bby87hsnz4w"; depends=[edgeR limma ReactomeGSA Seurat]; }; 174 - RegParallel = derive2 { name="RegParallel"; version="1.10.0"; sha256="02zk2sxikyd3mi54p51dwqkz73rsnb854rg0w73kc041kjr6cs4r"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; 175 - RforProteomics = derive2 { name="RforProteomics"; version="1.30.1"; sha256="1ld4lkalpywfll2zw93flgnvbhr0djiswd7bqx1ahsy95920v75m"; depends=[BiocManager biocViews MSnbase R_utils]; }; 176 - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.24.0"; sha256="1wwbabqd3d5lrx82qaxpc2qyxx070ir31wjjnfan0fxdy3z53a1g"; depends=[GenomicRanges]; }; 177 - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.24.0"; sha256="0x6hvz9hk6ynwkak7rzi60lm55ksq1kh4098g6xgq0n3zvgvmhw8"; depends=[GenomicRanges]; }; 178 - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.0.0"; sha256="0yyyv67cg50r202x5r9i9wasw4m4gqaqjaqgy0iv6v9z5hzsi5v1"; depends=[GenomicRanges]; }; 179 - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.24.0"; sha256="1wcz9jp9z2vjdmqim693ij0pgz5c7lykd2gnqpwbg23gpr1a4vlz"; depends=[GenomicRanges]; }; 180 - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.24.0"; sha256="1vdlhzwxfb2hv20bzxvnkrgpb3yi36459yjyr97375fh3lxaqw70"; depends=[GenomicRanges]; }; 181 - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.24.0"; sha256="0sajb3m10jlq9yf364ngzmzvj28rfrrbd5jwahajigln6mbsbzd7"; depends=[edgeR]; }; 182 - SBGNview_data = derive2 { name="SBGNview.data"; version="1.6.0"; sha256="1mxn6ydd5zm4gi6dqccfify82llhc85841gbp4hgy926zk5pg2f0"; depends=[bookdown knitr rmarkdown]; }; 183 - SCATEData = derive2 { name="SCATEData"; version="1.2.0"; sha256="0ys32g82m90lvgqrz3ryy2az6hszxv8fj2i9mnzdyp0bzrvs0pbl"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; 184 - SCLCBam = derive2 { name="SCLCBam"; version="1.24.0"; sha256="12yq6k20f8l92l9apij04af3xzx6i9w4pkjbj84gxi17q5p0h5za"; depends=[]; }; 185 - SNAData = derive2 { name="SNAData"; version="1.38.0"; sha256="0scvy2fxzgnbq3lpqq9vhcl0ihwkf1lwk2iijgw7mvbbspq9d28b"; depends=[graph]; }; 186 - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.28.0"; sha256="0qqqf1qj10m3l17yj6cqrpafngnzzpjl3hsa8qs9hq1x2azvg6p8"; depends=[]; }; 187 - SNPhoodData = derive2 { name="SNPhoodData"; version="1.22.0"; sha256="1a7gcvlc1axg9m1gmg0wm6yhgyhasfzcmlilwydpkjbn9j3fs8kp"; depends=[]; }; 188 - STexampleData = derive2 { name="STexampleData"; version="1.0.8"; sha256="07flhr3a0r6h9xrc91pqlaq9bgx7vl4b8d9l8kb5gkcwr7m0qls3"; depends=[ExperimentHub SpatialExperiment]; }; 189 - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.24.0"; sha256="1v8q5mpplkdi8hz8i89fx5gzzhbnw32nw3vm7qv3rb84v4vs57pv"; depends=[]; }; 190 - SimBenchData = derive2 { name="SimBenchData"; version="1.0.0"; sha256="123fi1d0y55z92mzprjizh6vgrhv0mlmm2xk9xxb6fm0z6w293i0"; depends=[ExperimentHub S4Vectors]; }; 191 - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.20.0"; sha256="0y9axq72ssxfirfwmi6ir8z241nas3maz82m75smhj1yq7qn73yk"; depends=[]; }; 192 - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.4.1"; sha256="01f6ddz8x3w19hq36ym0dm4afnq94dcr68kvl5hrglarqdzlikf7"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; 193 - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.0.0"; sha256="0kzs97y25sr2527pa2kqddkz0wckb727gnczipxjspmilvnp8j2z"; depends=[ExperimentHub]; }; 194 - SomatiCAData = derive2 { name="SomatiCAData"; version="1.30.0"; sha256="0a4wzfss5habxn1mdwas699ff8prpylj2ybgb5dd7691zjygx07f"; depends=[]; }; 195 - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.28.0"; sha256="111y36lvd518b7cn4k3025qrq77nh3rks9hz3r11k1af2y9d3p80"; depends=[GenomicRanges IRanges S4Vectors]; }; 196 - SpikeIn = derive2 { name="SpikeIn"; version="1.34.0"; sha256="1bj4h1zjkaabv7d7l67aq58j2v2npwnspa3xg35jxzjqwcd8z459"; depends=[affy]; }; 197 - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.32.0"; sha256="0kg29bfw144bnzxk81kiw3wfyqkdwaqgr3mqyjb3ag1kqa91rwyf"; depends=[affy Biobase]; }; 198 - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.28.0"; sha256="0yzwyv68495zqg3cjqyxzm6zxprzy3jq6j55m2hp7wwqn1ab0sb1"; depends=[Rsamtools xtable]; }; 199 - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.28.0"; sha256="0qh2n7a2lrfr61lag5bshpscm3fqga4gw88zz7lvf9l8lx60fn84"; depends=[]; }; 200 - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.16.0"; sha256="06q2d1pba3wixdmdswci8a6my7xkwfkwkm4a5zsvyjsv9ljc20ap"; depends=[SummarizedExperiment]; }; 201 - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.12.0"; sha256="14j4m7h5sspp6d9dvqqmc8s7av32gsi0c463v9l1jyf33yrakl4y"; depends=[]; }; 202 - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.12.0"; sha256="1gihnggazbbbg51klciwi41hrv9ygsnlx5pg4m5l21j30g8h6k29"; depends=[Biobase]; }; 203 - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.12.0"; sha256="18lk6qgikk0da6wq370zynqcxx0742ys7qyd855rjjqq6g5bsdzi"; depends=[Biobase]; }; 204 - TENxBUSData = derive2 { name="TENxBUSData"; version="1.6.0"; sha256="1phx64jiqwsv5caphbd3iarng6x6aljicwg0g97jmrd9dwzqz3g7"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; 205 - TENxBrainData = derive2 { name="TENxBrainData"; version="1.12.0"; sha256="069wcxdwbcxfqy75yibrafqkhgc14yh3fbyn71bgdjpfsi4xrv9r"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 206 - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.10.0"; sha256="05srydf84703w54sdirribdl4w2w9n3zmd5rwkv6nd5b9v3zlqzb"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 207 - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.0.2"; sha256="1jgk0xzy7gjypfbh0a6xjk34kl97b3i1j1j6f6fqq2d2fgbif2zq"; depends=[ExperimentHub SpatialExperiment]; }; 208 - TMExplorer = derive2 { name="TMExplorer"; version="1.2.1"; sha256="15cfgkxvg53fkbzssmqjy72xbapyh4g2j3vgw1pp48jmm0n17z67"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; 209 - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.10.0"; sha256="0gna07p2g5jm4c0hypbs2g1gbmvc72xi7y0qiw6jylac1qahnsil"; depends=[ExperimentHub]; }; 210 - TargetScoreData = derive2 { name="TargetScoreData"; version="1.28.0"; sha256="110dlcvwhk7dckca8p3d83p3lz980rxbff585nxxlhy2rjw4m87i"; depends=[]; }; 211 - TargetSearchData = derive2 { name="TargetSearchData"; version="1.30.0"; sha256="01701jcf9yq1fcxjzzgddd3ah2fxd1wafqyyf2h8k2nxg63l4wxb"; depends=[]; }; 212 - TimerQuant = derive2 { name="TimerQuant"; version="1.22.0"; sha256="0nj68i3i6frwwqnfj72gzl2qs5iyp2wwzhn7hqvqw7s3sgl0vxjj"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; 213 - VariantToolsData = derive2 { name="VariantToolsData"; version="1.16.0"; sha256="0a4xhvvg5p9v04ry9d70wpnma2b7ba6m04k40phalc2q2l1mgb49"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; 214 - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.24.0"; sha256="1j8n8iaxch1cs6g3d9raaziyzvcpbp0am9awrzi8a89zbp8vw5lf"; depends=[]; }; 215 - WGSmapp = derive2 { name="WGSmapp"; version="1.4.0"; sha256="17z3m5m53kdp2w798nh9bl5j5fff4yyfig747s17cvgd1bmcslw6"; depends=[GenomicRanges]; }; 216 - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.30.0"; sha256="082d3y9x78la6d3ssiahkzzlwx12wir9nvm0g5aj278dfc5z509a"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; 217 - adductData = derive2 { name="adductData"; version="1.8.0"; sha256="0g6r5j7j1a0800j5mqv5bxvxd46vankhajjq39wxicw7zynsh57p"; depends=[AnnotationHub ExperimentHub]; }; 218 - affycompData = derive2 { name="affycompData"; version="1.30.0"; sha256="1m3x8v57dfv52q2nvsn8pcb8gsb91gz8w39nkba8hf6nh27c24sc"; depends=[affycomp Biobase]; }; 219 - affydata = derive2 { name="affydata"; version="1.40.0"; sha256="1x06nwnhj9bsbvlp1rzda67cn6g39s16hya7kinqfcllv1m7s0y2"; depends=[affy]; }; 220 - airway = derive2 { name="airway"; version="1.12.0"; sha256="0rfx01gn7nx00yaxx737cxrvk1jncamqg0kxg1idl45p7ws12h2c"; depends=[SummarizedExperiment]; }; 221 - alpineData = derive2 { name="alpineData"; version="1.18.0"; sha256="1j58slk6l4wxkyjm6d4axyp2hn8pivc49y8jx28rng03vxlwm386"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; 222 - antiProfilesData = derive2 { name="antiProfilesData"; version="1.28.0"; sha256="0hlyq1403pyin1fs63nplz0c4ppl9aclxbgw67wglwg7nbfiqh68"; depends=[Biobase]; }; 223 - aracne_networks = derive2 { name="aracne.networks"; version="1.18.0"; sha256="19jgjmrnakmbhqaw7ykh8fx75zljdmcjz9nf23py9rs7xh58ykhx"; depends=[viper]; }; 224 - bcellViper = derive2 { name="bcellViper"; version="1.28.0"; sha256="1w4d6xk1npg3h28wp2jn6z4lcwqk8cgiyxpwfzpryg8jx4h434yc"; depends=[Biobase]; }; 225 - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.30.0"; sha256="1vwl6ldd5694h52jvs4827jw4byx6pmf6vlspjxp9xjr7wxn3f8s"; depends=[beadarray Biobase]; }; 226 - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.6.0"; sha256="04aj0cqq1l6x353bjcyc5gal27clf3j47bdagrac33p6l1f5n4kw"; depends=[ExperimentHub SummarizedExperiment]; }; 227 - beta7 = derive2 { name="beta7"; version="1.30.0"; sha256="0knqzxbgn0ra6l2k4dwn22wvg8x2zk9skffy0slc34s6g3qryin5"; depends=[marray]; }; 228 - biotmleData = derive2 { name="biotmleData"; version="1.16.0"; sha256="18cvwmi80jh54v40vp9iqas1afc6cqb2v2abinyyxq2mba4afmnd"; depends=[]; }; 229 - biscuiteerData = derive2 { name="biscuiteerData"; version="1.6.0"; sha256="1d7zibjf0qccmdnzdxh7wy1h943yhnbf8zdix72486pvhzm124zj"; depends=[AnnotationHub curl ExperimentHub]; }; 230 - bladderbatch = derive2 { name="bladderbatch"; version="1.30.0"; sha256="0jsxm78cvfbjn1360lhka7nxxiynqsnf1p2r3awgy239z93xyri1"; depends=[Biobase]; }; 231 - blimaTestingData = derive2 { name="blimaTestingData"; version="1.12.0"; sha256="0wwjxhk9k4k5pwrwcmvqycfsl99hx2lwv4nykf48zc5qnbzcpchh"; depends=[]; }; 232 - bodymapRat = derive2 { name="bodymapRat"; version="1.8.0"; sha256="162rn0mi9a0lrljxbb78l2s7n0r3bmq835vwdb8xa2sf6sywni87"; depends=[ExperimentHub SummarizedExperiment]; }; 233 - brainImageRdata = derive2 { name="brainImageRdata"; version="1.10.0"; sha256="088f7rbp7l2914nz2wc5wz89filcwfxjpg8c9f84mvwf7glcg2y9"; depends=[ExperimentHub]; }; 234 - breakpointRdata = derive2 { name="breakpointRdata"; version="1.10.0"; sha256="1siwcllxhk9g3hscn5d01lkla49nny9c778msgv2ybj1lng3l215"; depends=[]; }; 235 - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.30.0"; sha256="15ixf8x5k63pjshylbn8jgmx7xyjn0pqpn84615q2vicf136xgs8"; depends=[]; }; 236 - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.30.0"; sha256="159yhrfsjccz145iddnzc5i87gag2ngy244v77cf73y96xs8985i"; depends=[]; }; 237 - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.30.0"; sha256="0gvfwg27nxk1jslr95fzzi4s3p4s4liyc7a5fyfk33ilqjg7nkc0"; depends=[]; }; 238 - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.30.0"; sha256="174nq00w753clhxga5azjkllj1mm10ygig7afn7lhy2xyph30aa5"; depends=[]; }; 239 - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.30.0"; sha256="1375bwvp2p436p4d7j1y93q8g7rw62160ks711f3l54xxg78q2md"; depends=[]; }; 240 - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.30.0"; sha256="0skv3m5wrhhz6k9k6nxjdji9kwqkwjbb2y9q1ff6x289ivbj4w2a"; depends=[]; }; 241 - brgedata = derive2 { name="brgedata"; version="1.14.0"; sha256="1w0ihaqdrbvgk13sf3c89bb04wdljckaw1iqx521wcisza06agzi"; depends=[Biobase SummarizedExperiment]; }; 242 - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.30.0"; sha256="1zfwxja77hl4va6m3d377cfvlrmpr4q13n0sp9sm4g82qzhvw4v7"; depends=[affy]; }; 243 - bsseqData = derive2 { name="bsseqData"; version="0.30.0"; sha256="160kw64mixan2warsb9zqdmabsjn07fgc5bgw0jb2chl616x4265"; depends=[bsseq]; }; 244 - cMap2data = derive2 { name="cMap2data"; version="1.28.0"; sha256="0ismi8irqab4a4afg7cil5xw8i49g89sc60z2nf63krsg0pgw0cp"; depends=[]; }; 245 - cancerdata = derive2 { name="cancerdata"; version="1.30.0"; sha256="1zrjwb1bqivlhjfkzvb96i3z4c92qh1j4fwiq0z0dmzvcz73svw4"; depends=[Biobase]; }; 246 - ccTutorial = derive2 { name="ccTutorial"; version="1.30.0"; sha256="11lzf41jwb6x65i3hlcazhf1n1yskf1lxv439521sn9b05dgwvyb"; depends=[affy Biobase Ringo topGO]; }; 247 - ccdata = derive2 { name="ccdata"; version="1.18.0"; sha256="0vganjx24b58cs4r9ixsik7rz328r31vwzcbvscpa1i3awhcf96y"; depends=[]; }; 248 - celarefData = derive2 { name="celarefData"; version="1.10.0"; sha256="063ipjw0giy63jrm518psp0wx61hlpwdcm2b8c9546zmx9v2ig0r"; depends=[]; }; 249 - celldex = derive2 { name="celldex"; version="1.2.0"; sha256="0vqfjlmw5gvygl3km4cpdjaklghf0a7vl23z4qgp8vsn00zn4a9b"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; 250 - chipenrich_data = derive2 { name="chipenrich.data"; version="2.16.0"; sha256="08czq1icisl1vgbdbr4km8gxxii198546iwwr5himrvwjfqy4vvw"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; 251 - chipseqDBData = derive2 { name="chipseqDBData"; version="1.8.1"; sha256="1dfm8kl3sn6rmnnlr5kxc2b1wjy3f6kmf3m01c4c1an9lig04zv5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; 252 - chromstaRData = derive2 { name="chromstaRData"; version="1.18.0"; sha256="0lvyw3cr2bjqgziv9l95fcl63bp98zcygviwmh40mrvwfp9590n3"; depends=[]; }; 253 - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.2.0"; sha256="04vizbnfhk3gq8h94k804hwhpfscnpj93li5bmrjhbcp80s9lqah"; depends=[ExperimentHub]; }; 254 - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.28.0"; sha256="0gmvlrmhyxl82akxsyrcvx6m7qwfh8gbjghgb6cy2q1a4vn9vs6m"; depends=[cnvGSA]; }; 255 - colonCA = derive2 { name="colonCA"; version="1.34.0"; sha256="1zcm90azdzjydj2gwpbsxh4fph8lp8n5k2hmvh8nyids8kmcp200"; depends=[Biobase]; }; 256 - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.4.0"; sha256="0pqiympiiys7f8yna56pfywf8b0nf9w4j3yyr25iqlx81y2jzcdj"; depends=[]; }; 257 - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.8.0"; sha256="0qq49amcbdicdlfbsdr8wmhrl5gpk897zchsmpm5s9svrn0nbjm6"; depends=[ExperimentHub SummarizedExperiment]; }; 258 - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.8.0"; sha256="0jwnagwlsxi47ql35cchrsrc1wlqgv1g4rm5dwbyasq3lgsh7a9n"; depends=[SummarizedExperiment]; }; 259 - curatedBladderData = derive2 { name="curatedBladderData"; version="1.28.0"; sha256="1f66avn99wxsyy1jkiljgcir8vy9wg266blmdsh0wrjlk0cb2jmx"; depends=[affy]; }; 260 - curatedBreastData = derive2 { name="curatedBreastData"; version="2.20.0"; sha256="1gick1qkwgjgw76m99g9lxljnh2mrlawq9789h8kfp48cpdzs99b"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; 261 - curatedCRCData = derive2 { name="curatedCRCData"; version="2.24.0"; sha256="1pzlw72an1flqz0lr52diqslkxgpcrfgzzw99llilmpr40nwdb4z"; depends=[BiocGenerics nlme]; }; 262 - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.0.10"; sha256="15v8dirzjlyb1bp2r82yvhax9vgnxyamfps7042sncvzmxlyjnp8"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; 263 - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.30.0"; sha256="1qfhwkbr884g1xgrp8d2d20d9b2c1v5pvv3kf49lypxcd7m5njzg"; depends=[affy BiocGenerics]; }; 264 - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.14.0"; sha256="0fr368619d75jwqjn4mrcc3dagd7hnk8xpm4y3arrn15g92wflzh"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; 265 - davidTiling = derive2 { name="davidTiling"; version="1.32.0"; sha256="0yjd5myq67hgjrpxw4n1kpplsgndw43jg97ghvb1jpxfshhajs0x"; depends=[Biobase GO_db tilingArray]; }; 266 - depmap = derive2 { name="depmap"; version="1.6.0"; sha256="1hvxq1ph9qzrm34h4wpq83fk6lchlxvw8v28l80bjkqmq43jflsm"; depends=[AnnotationHub dplyr ExperimentHub]; }; 267 - derfinderData = derive2 { name="derfinderData"; version="2.10.0"; sha256="1xmc6b2634iff34mw08bxxgasq9s3p3yl6b4s492pcrj4jj21x25"; depends=[]; }; 268 - diffloopdata = derive2 { name="diffloopdata"; version="1.20.0"; sha256="03z6m4fvf69bgqzijyn7ccagqq7kcjb1056nqc303n5l2pp0ms1b"; depends=[]; }; 269 - diggitdata = derive2 { name="diggitdata"; version="1.24.0"; sha256="0hj7nw306pdy5nwbv5bhl8yrgh09f5jp263l8jiw8fha3vhygsqk"; depends=[Biobase viper]; }; 270 - dorothea = derive2 { name="dorothea"; version="1.4.2"; sha256="0r0ax28rqa0grp0vlq7dfsrl048lhhzxjmaapwm4asnqqv0rl13q"; depends=[bcellViper dplyr magrittr viper]; }; 271 - dressCheck = derive2 { name="dressCheck"; version="0.30.0"; sha256="0vd0gaqgry2vwfh4pnqzr341dlr723w0ivlq9da85066lcyqjlmg"; depends=[Biobase]; }; 272 - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.32.0"; sha256="0bmc53rma0mmyvj0wmzbvwdyjlzqh1wvl1225xmfqzcri8681g27"; depends=[GEOquery marray]; }; 273 - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.32.0"; sha256="0lkqkwnfn14s41hz9yvzr4ic9rmv005dljhf237rgprmjy72p2ij"; depends=[affy ecolicdf]; }; 274 - emtdata = derive2 { name="emtdata"; version="1.0.0"; sha256="0pdsgamiipwz05wsyrd8w55y9qxjc6fpnhj8wzdapzf77f8z70kz"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; 275 - estrogen = derive2 { name="estrogen"; version="1.38.0"; sha256="02w8v7jpmb479mq944sn27zpm2hlfin7j8grpvqsqn342s7lic1j"; depends=[]; }; 276 - etec16s = derive2 { name="etec16s"; version="1.20.0"; sha256="18kqd4l7na3kaby1bvqvhl2lrb82n8qxc42ks1103cqpbbzr2ms1"; depends=[Biobase metagenomeSeq]; }; 277 - ewceData = derive2 { name="ewceData"; version="1.0.0"; sha256="1jl6c7xaf9w8m9v1ijx11p5788qdf0qcjjqnj811nq3pm8wf83gr"; depends=[ExperimentHub]; }; 278 - faahKO = derive2 { name="faahKO"; version="1.32.0"; sha256="0q7z45bw9brbivgjzfw13y6qb7s9w4n5mifjzj6hlkp69m0xvdqr"; depends=[xcms]; }; 279 - fabiaData = derive2 { name="fabiaData"; version="1.30.0"; sha256="1qcs3rjks6q67mxs5czqn770pp818d1rdz636vqylysjscska1md"; depends=[Biobase]; }; 280 - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.30.0"; sha256="01rdnpq1nfrmprnc0r64m9zr9f66yw4iy8s5qy4y9ssz9y48fyjk"; depends=[lumi]; }; 281 - fibroEset = derive2 { name="fibroEset"; version="1.34.0"; sha256="0gvn15fd88v9nf150cg8hbyg3djx2yz69q1lswi1nwhxp5vi37y0"; depends=[Biobase]; }; 282 - fission = derive2 { name="fission"; version="1.12.0"; sha256="0g979bifyfjy27lngmqq318j76z7mwxydna50k64gld6scypdir8"; depends=[SummarizedExperiment]; }; 283 - flowPloidyData = derive2 { name="flowPloidyData"; version="1.18.0"; sha256="07hh6haz593mgihgg6bwayajvb6w07n8sj7kpc617nkxl8fbb8ar"; depends=[]; }; 284 - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.4.0"; sha256="02krcdh4gldqab2nl3mdqzcv0vg7jy47qn8vgkmggk6y1mq1yrpp"; depends=[]; }; 285 - frmaExampleData = derive2 { name="frmaExampleData"; version="1.28.0"; sha256="1sh6qcx699lq1a324pm5f201ilm3wypmv862nl5271jw02c4wf3m"; depends=[]; }; 286 - furrowSeg = derive2 { name="furrowSeg"; version="1.20.0"; sha256="1a6kmdzr31k5w71j5zryfwabkjlkwizs57z660v2wxh61if95nws"; depends=[abind dplyr EBImage locfit tiff]; }; 287 - gageData = derive2 { name="gageData"; version="2.30.0"; sha256="1x7fym3mjz0r5dlw9bwhlfgp8kly8zc7bxbl4g7ybq9gaiq0w41z"; depends=[]; }; 288 - gaschYHS = derive2 { name="gaschYHS"; version="1.30.0"; sha256="1ji9iklr1dryzlx9mji4gipjld4gvm7lriyyc79q72ixm2s3jhpz"; depends=[Biobase]; }; 289 - gatingMLData = derive2 { name="gatingMLData"; version="2.32.0"; sha256="0yfzfcq7a7iicp221ifi96pfgbdhgk1ajmvjyl8a5zf82s8cd4vp"; depends=[]; }; 290 - gcspikelite = derive2 { name="gcspikelite"; version="1.30.0"; sha256="0v2lma129ywngyg907kgdi9xrigldpv3r9kdkadvghpw3grqp0yh"; depends=[]; }; 291 - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.28.0"; sha256="0d2ia0v6l6vrzk4xbq0s2gbgg2xikabjyipv4yppnf7s9lkphrhz"; depends=[GenomicFeatures rtracklayer]; }; 292 - genomationData = derive2 { name="genomationData"; version="1.24.0"; sha256="1b6x46hn5qkm7jva8vvi83s4xzy5hg8hxgmf0v00jws39hgdqwmw"; depends=[]; }; 293 - golubEsets = derive2 { name="golubEsets"; version="1.34.0"; sha256="1r3mxp1frb69dihdnw82vjh0scw8fd30wv5dq7cml9sihyg4dllp"; depends=[Biobase]; }; 294 - gpaExample = derive2 { name="gpaExample"; version="1.4.0"; sha256="11z0jq3lnhpd4mkwi67g2n9yq4l6h9pxxdjrgx2pj032l8n3g47q"; depends=[]; }; 295 - grndata = derive2 { name="grndata"; version="1.24.0"; sha256="01drlc1yrnz82dc3527axb68gpz3wqsbqxw7qngqhnwj4a4ahy03"; depends=[]; }; 296 - h5vcData = derive2 { name="h5vcData"; version="2.12.0"; sha256="1ljd2z9x1b8xyrj5gf0pqh9ynnzrg1jm86ji234v9333pqm0q25n"; depends=[]; }; 297 - hapmap100khind = derive2 { name="hapmap100khind"; version="1.34.0"; sha256="1xh5q681in2aws3w5jnh3aiji6j11l72195lfrjv7lpc94l076fs"; depends=[]; }; 298 - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.34.0"; sha256="0fkmhd1518clyrkzifq0ywlg1axp8np21zwchrrg6f4vgvikdxqn"; depends=[]; }; 299 - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.34.0"; sha256="1bdla019lks2bd5sgli4d0g235jyapvhsvxc6pyqp3imy59rg82i"; depends=[]; }; 300 - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.34.0"; sha256="0si8kpym40wv02d54yr5d0jy16gh85mdlbgs6nm4piww6lbkqzaz"; depends=[]; }; 301 - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.34.0"; sha256="0ahvw0hmx32sch47ciyca302jjh77ara9p66dzmch4k4sjxip6jl"; depends=[]; }; 302 - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.34.0"; sha256="0j5r3v8fdc42z76hcglbfh1jqfx4pfwxyyafz7x2arlpg5q0snzl"; depends=[]; }; 303 - harbChIP = derive2 { name="harbChIP"; version="1.30.0"; sha256="1bg065ahrklsyzax0909w0q8b2nwrhh4nv95pxqi6nl4gvj6vgp7"; depends=[Biobase Biostrings IRanges]; }; 304 - healthyFlowData = derive2 { name="healthyFlowData"; version="1.30.0"; sha256="0dyp8kxfihqpgps2j1xcxg8zjiggy2i4aqrnngpa8074795pi32y"; depends=[flowCore]; }; 305 - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.30.0"; sha256="0swj9254b7rz6vv2bfhpj4mafawrg34irq4rfdng2ybylncsjqar"; depends=[]; }; 306 - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.12.0"; sha256="0yvsf8a3imyjz6a6imbbb42hs76nhgqghybpyc90izy06wbdg3db"; depends=[Biobase]; }; 307 - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.30.0"; sha256="0n88p8s7mz13q5jl361mfzsc7ggrkdzi0i9kpgnzxdn44hgv7gfr"; depends=[]; }; 308 - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.32.0"; sha256="0nac9bqqfihsaswqw73k5ybp88vz38fb8zdh40fca90zcfz47x2k"; depends=[]; }; 309 - humanStemCell = derive2 { name="humanStemCell"; version="0.32.0"; sha256="1k48s6fqnr13pa53gm1sf3rwc3a8sx0svfmgmg9vpy5dfywdq3r0"; depends=[Biobase hgu133plus2_db]; }; 310 - imcdatasets = derive2 { name="imcdatasets"; version="1.0.1"; sha256="1vialgy4r06kf8b2r9j0dqd0a5chzpr8n1l2v5mxwv7c4gbxqph3"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; 311 - kidpack = derive2 { name="kidpack"; version="1.34.0"; sha256="1fi7nrmqk1ldics8bxdpagf6a8m662pv63vr5wyyv0kz3hc5jvpr"; depends=[Biobase]; }; 312 - leeBamViews = derive2 { name="leeBamViews"; version="1.28.0"; sha256="1bnvdpn2ycpldv9b9pgm4vcrly3w9lyzh6vip35pfjf0gnjjvj7g"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; 313 - leukemiasEset = derive2 { name="leukemiasEset"; version="1.28.0"; sha256="1dcws9nwb6rf4ps84zysi1k27a4nv0nq1vw3hpa5f9jxpsqwa9xa"; depends=[Biobase]; }; 314 - lumiBarnes = derive2 { name="lumiBarnes"; version="1.32.0"; sha256="0bgdywd3w9gfl739khm0bsib3dzy8s3682992jh6zf84qhyggws9"; depends=[Biobase lumi]; }; 315 - lungExpression = derive2 { name="lungExpression"; version="0.30.0"; sha256="103k6kj7a3p7fnn0cva0j1884ypbqlc88vg066d0kbnp9wzbvlrb"; depends=[Biobase]; }; 316 - lydata = derive2 { name="lydata"; version="1.18.0"; sha256="1nxx94p15szbrhzz45c75bjs0ljl2iz2vibrjw9wqf5imzlx62fq"; depends=[]; }; 317 - mAPKLData = derive2 { name="mAPKLData"; version="1.24.0"; sha256="0rkd14z0wajm4l82kmyjxil3ab9xhmrbd0mwm440cb3hq0m9pqa8"; depends=[]; }; 318 - mCSEAdata = derive2 { name="mCSEAdata"; version="1.12.0"; sha256="16yx7jj9ya8b3l6ys7ndzpdpfzpkxm2jsp04bfk8jb87nh66f355"; depends=[]; }; 319 - macrophage = derive2 { name="macrophage"; version="1.8.0"; sha256="1rqvr0l720jhm458k7vq3xhnaxdx07nd621pq0qmlf501zmjn2js"; depends=[]; }; 320 - mammaPrintData = derive2 { name="mammaPrintData"; version="1.28.0"; sha256="1lmp14mxz1zjqpix25a25c0ydzkg4hxvdaqxn3bpdpckiwslxzik"; depends=[]; }; 321 - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.36.0"; sha256="0lbw5cw9inglykf767ifc2spb3lkpnx4qrg0laylijbh7wrwp54h"; depends=[]; }; 322 - mcsurvdata = derive2 { name="mcsurvdata"; version="1.10.0"; sha256="0ywgqqa1ha3nf1scjyw5fsr0drbal74a2zw43rlb4v943jy6wg1m"; depends=[AnnotationHub Biobase ExperimentHub]; }; 323 - metaMSdata = derive2 { name="metaMSdata"; version="1.28.0"; sha256="1dgspwd6agzmqiwpn19xahj9c3ydghn2bxcb9p8fy383270nday6"; depends=[]; }; 324 - methylclockData = derive2 { name="methylclockData"; version="1.0.9"; sha256="1xs3yi4b39sprlma9rnvbv4amsq04f8xzsaqkx31h9id6849axhg"; depends=[ExperimentHub ExperimentHubData]; }; 325 - miRNATarget = derive2 { name="miRNATarget"; version="1.30.0"; sha256="163pybzsd312grniglyl8iyvch5dpx68jlx3gcnin4lsl3n7dmir"; depends=[Biobase]; }; 326 - miRcompData = derive2 { name="miRcompData"; version="1.22.0"; sha256="1g7fhg60jl70m156cqp56pj2z54kifyay1c4vgd1cn1arws7g29r"; depends=[]; }; 327 - microRNAome = derive2 { name="microRNAome"; version="1.14.0"; sha256="0rbnpml5a3h5rma1pmblvad1bapzzq413885zir3083r16avsr84"; depends=[SummarizedExperiment]; }; 328 - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.0.1"; sha256="06h694lg6h74andvzijgjzgngwb80g1g461sm3lz9rqq7dpq1w0j"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; 329 - minfiData = derive2 { name="minfiData"; version="0.38.0"; sha256="16rshq95wsmj6cjipch8w79il2zf6krs3p1n3nybnbw206wfcg6l"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; 330 - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.18.0"; sha256="1gjxzzp3hy4pn79s4c0mpzkqwc1g6iwfvmd34qkkrwwbrib4cf4b"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; 331 - minionSummaryData = derive2 { name="minionSummaryData"; version="1.22.0"; sha256="0r4fr27sh8sbvn17v9n8z4lsvgcwzp7fd9xmkbs2k4bj7qy3d1ck"; depends=[]; }; 332 - mosaicsExample = derive2 { name="mosaicsExample"; version="1.30.0"; sha256="18804aqmvsc5ncqvh872p6033aml83y9d7nwq2hsf1p0fxh47l0r"; depends=[]; }; 333 - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.30.0"; sha256="1z1m3gn02qiqmhk9ib5xcv8w1ljmp4hc8s5f0sgjcw0zd7gs8blp"; depends=[]; }; 334 - msPurityData = derive2 { name="msPurityData"; version="1.20.0"; sha256="11i1xn42fl0vdsc3b640g5k1j5lirscqcqbyw1smklpjsb874plf"; depends=[]; }; 335 - msd16s = derive2 { name="msd16s"; version="1.12.0"; sha256="05m40zhj25mbaslsh2hl30dndvlb7jqjykksdidh1c99xhg2sxrr"; depends=[Biobase metagenomeSeq]; }; 336 - msdata = derive2 { name="msdata"; version="0.32.0"; sha256="1l1457bhfxrny11qxmn5ylhlxb4vfy84vwhsqfk3n48yrdpss890"; depends=[]; }; 337 - msigdb = derive2 { name="msigdb"; version="1.0.0"; sha256="1pwn1h28cg4h78p2h077b0zmydrd90dlgivislg3pcjx30c7qhm5"; depends=[AnnotationDbi ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; 338 - msqc1 = derive2 { name="msqc1"; version="1.20.0"; sha256="13vyr4wdzj14lx2aggvnax21b8b9zlr75l6ybkyrw8q7shpmfpl6"; depends=[lattice]; }; 339 - mtbls2 = derive2 { name="mtbls2"; version="1.22.0"; sha256="0jyvvpqs8n08dpzd492j2amg0xsf6rcwvzrfsr8knsi1v0fw4rkv"; depends=[]; }; 340 - muscData = derive2 { name="muscData"; version="1.6.0"; sha256="08d8j6sxrkvz5xnxcy6g4p3j6phr20lwcpvfqfqidjl4skf01zp5"; depends=[ExperimentHub SingleCellExperiment]; }; 341 - mvoutData = derive2 { name="mvoutData"; version="1.28.0"; sha256="1p8j1fl07rp03m9gskdnll4qzbm4bp4v15rsir1nc366idibcb8p"; depends=[affy Biobase lumi]; }; 342 - nanotubes = derive2 { name="nanotubes"; version="1.8.0"; sha256="0bl6yc62ahlafnmb6hv5064skrlv3b67npaxpc5rx1h5xsqxn5ni"; depends=[]; }; 343 - oct4 = derive2 { name="oct4"; version="1.8.0"; sha256="1a4m6l0iwlcprhmnx6bv12s9av4bkrvhji9a1s3axz9x14bdc2ls"; depends=[]; }; 344 - optimalFlowData = derive2 { name="optimalFlowData"; version="1.4.0"; sha256="194xfwia2zidmv7y184dnivhq4ldrfaywacg4bisl9d65rrzrrs3"; depends=[]; }; 345 - pRolocdata = derive2 { name="pRolocdata"; version="1.30.0"; sha256="1gd8mxal0x2v8sn3m3jxd2fm73dcxmv1c6rmgbp8gkkm3av2yj4i"; depends=[Biobase MSnbase]; }; 346 - parathyroidSE = derive2 { name="parathyroidSE"; version="1.30.0"; sha256="1sx0sby9i0jffni6zcpw904m9xajvm7959vd26n4mhd3jpi98rcw"; depends=[SummarizedExperiment]; }; 347 - pasilla = derive2 { name="pasilla"; version="1.20.0"; sha256="1nwc1asikgbjadjcnlk1zl8apjwy81cz4y6qh22w5pzjk1ah1zyh"; depends=[]; }; 348 - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.30.0"; sha256="17ifay8vsh9n0xfh7aa9vg2hgjbl91lx76fnzby18wjph3w0k3ff"; depends=[]; }; 349 - pcxnData = derive2 { name="pcxnData"; version="2.14.0"; sha256="03j8bmlk0j680g5pcbfggvxyr3j94yaaxnlzmxxllzqfrnpl5phm"; depends=[]; }; 350 - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.30.0"; sha256="1q59kwzsmyq8awkhk7d9klw7yfbqvxwx87yjq1k1zb53mh3ni1pl"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; 351 - pepDat = derive2 { name="pepDat"; version="1.12.0"; sha256="05gizhc2xqjfpcaqlypxha7050wm0grcwyq9fvmngij3k22bdj4j"; depends=[GenomicRanges]; }; 352 - plasFIA = derive2 { name="plasFIA"; version="1.20.0"; sha256="1c8sbi24lbp173854viy8jh2vvp8k8aka7xwwhkz0qzp8d35fhd0"; depends=[proFIA]; }; 353 - ppiData = derive2 { name="ppiData"; version="0.30.0"; sha256="13f2qffxcmg4r3mmiwrihrn0abl5xvklx56d4f3s0nnvzhj88p0c"; depends=[AnnotationDbi graph]; }; 354 - prebsdata = derive2 { name="prebsdata"; version="1.28.0"; sha256="1n7rylqrafl8c82m4waxz5flvky64mhphk4lnnqlk512c2b3855z"; depends=[]; }; 355 - preciseTADhub = derive2 { name="preciseTADhub"; version="1.0.0"; sha256="1n8p0rr47bndg1f0x1z5gl32iy31v0isldz1pdf7arbcnl78cwmw"; depends=[ExperimentHub]; }; 356 - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.20.0"; sha256="085da764mlk9qb3z3d1y0j6a359hp17h880nlgnpq1h7ip9kl5an"; depends=[Biobase]; }; 357 - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.20.0"; sha256="1fimj3awfc2hl0ryh7g7bkklmgr4r6kkjfci1qrnrcwbc0zvkb8p"; depends=[Biobase]; }; 358 - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.20.0"; sha256="1zhmij5zdwy5gxxghy51nhjc6nn1b6jhck203ydvrk1hqa85j9k2"; depends=[Biobase]; }; 359 - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.20.0"; sha256="0brkqjpz2l2c3nkc85q5inl98xyw602rj1zlca45chy537i273pf"; depends=[Biobase]; }; 360 - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.20.0"; sha256="19rrrph8fmk99bx49i6a3cs95cf392ij8ccml4a6dh2mzd8bys92"; depends=[Biobase]; }; 361 - ptairData = derive2 { name="ptairData"; version="1.0.1"; sha256="01scd1w8wji3008dgvxcv6csi2k5wlndxcrnsxdgjcd9hl7m86v1"; depends=[rhdf5 signal]; }; 362 - pumadata = derive2 { name="pumadata"; version="2.28.0"; sha256="1dy3mywrl3zx73mp50ihx981igrgygh309mvfi927aiigjyba0y8"; depends=[Biobase oligo puma]; }; 363 - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.6.0"; sha256="1qjwy9dc91c9jgrrlfl9q8h6ycnmqm2gknzfdf4cnhpskz8a4428"; depends=[ExperimentHub]; }; 364 - qPLEXdata = derive2 { name="qPLEXdata"; version="1.10.0"; sha256="09g541sz9jkk0adxy9n2ckzjkl87fl1y86i02vsz2b0b1pial53b"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; 365 - rRDPData = derive2 { name="rRDPData"; version="1.12.0"; sha256="0jiwvf7kismx3bxw1yrp940352q7ac78lm25ibmfz3nrxy347ynp"; depends=[rRDP]; }; 366 - rcellminerData = derive2 { name="rcellminerData"; version="2.14.0"; sha256="11dpy9r19p0zgk9y6sq0bf6fhx4amnshfh5z9ipkxnh3i68yn889"; depends=[Biobase]; }; 367 - restfulSEData = derive2 { name="restfulSEData"; version="1.14.0"; sha256="0y4wfdrj2wj41n0fprpmswzbp27nzqbd31x1lb16z4b2id58s2vv"; depends=[ExperimentHub SummarizedExperiment]; }; 368 - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.30.0"; sha256="1d6xs1vs9vkjz64b3v1srjizr6xqi8crfbl34yxd3lpfipp14f5h"; depends=[]; }; 369 - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.16.0"; sha256="1gjfpjisfznxhlsrfcd9q5isz5xcds38ky9j6xssks41jgdf9j5c"; depends=[SummarizedExperiment]; }; 370 - scRNAseq = derive2 { name="scRNAseq"; version="2.6.1"; sha256="14954hn19p7idxdnf16jrvplg63rpfkvmcb2v9f5kqxg4jv02g7v"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; 371 - scTHI_data = derive2 { name="scTHI.data"; version="1.4.0"; sha256="1pwgs7qwzaajhfqq5iyr41npxf3ivcjii40mp4w9ddgmhqw74mbn"; depends=[]; }; 372 - scpdata = derive2 { name="scpdata"; version="1.0.0"; sha256="0adfbzpvrh6m2fa88cpsyvjvdnb7cfkb2d367n3bsc5ga0myk1dz"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; 373 - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.24.0"; sha256="06h3rmh1m5lr7hzkd2yqw241gaqc4wx35nz126jnq767xk0vaw6f"; depends=[]; }; 374 - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.28.0"; sha256="112766y3fknrnmnv13nxzgyspw1l331x4vk2i3dfab0hg1khjr2c"; depends=[]; }; 375 - seqc = derive2 { name="seqc"; version="1.26.0"; sha256="0vm726y6m67jc2kqqkav1j1a1irs6qz43pg4dmr6kdpslj1yyy2m"; depends=[Biobase]; }; 376 - serumStimulation = derive2 { name="serumStimulation"; version="1.28.0"; sha256="0cf70km8virxjpz93rfvvfnzykqxvrlzgacfrksf07izj90dp6s8"; depends=[]; }; 377 - sesameData = derive2 { name="sesameData"; version="1.10.1"; sha256="0h4d2mbaizxqacc52xc4yd5x7p6ywsskaf1y2x8dznrijszmxi2i"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; 378 - seventyGeneData = derive2 { name="seventyGeneData"; version="1.28.0"; sha256="1jyb6lj71dhc00fka4913zxxkd6cqmd39r4khx1bhpi7nnvf7qcf"; depends=[]; }; 379 - shinyMethylData = derive2 { name="shinyMethylData"; version="1.12.0"; sha256="0q9m7ywsdqk02bnadxf2g975zy8sddw8yrjrr0rcl730jhznw5ph"; depends=[]; }; 380 - signatureSearchData = derive2 { name="signatureSearchData"; version="1.6.0"; sha256="12s2mp4lkr47gwspqnllrkmzldr99dqqjxrqrcjl2xmzn93fry72"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; 381 - simpIntLists = derive2 { name="simpIntLists"; version="1.28.0"; sha256="04z4aa60546jl88kj62y0h93gh9gbdpzfm6nhxc1g8541jmarrjs"; depends=[]; }; 382 - spatialLIBD = derive2 { name="spatialLIBD"; version="1.4.0"; sha256="17xb12gzfsjyawyzms3c9709gifsmpbr0sqgf77sjc9z60as4d4d"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; 383 - spqnData = derive2 { name="spqnData"; version="1.4.0"; sha256="1jqq9gc1s16q080p7jwjzx1jxd8x2i98gfqd0z5b321x8gsxnsqx"; depends=[SummarizedExperiment]; }; 384 - stemHypoxia = derive2 { name="stemHypoxia"; version="1.28.0"; sha256="1yvj8knlabh8ydaf513iyx7109cbwrpp14h27xywrybvfijdplmz"; depends=[]; }; 385 - stjudem = derive2 { name="stjudem"; version="1.32.0"; sha256="138j1lb6rk1vp11ya4ghzarpid78sc53smp68kfr2q33k24sglv6"; depends=[]; }; 386 - synapterdata = derive2 { name="synapterdata"; version="1.30.0"; sha256="1iamafvdnadymn1jr3hwj4yxf34w7d1jvf166kzn3icjj503cl44"; depends=[]; }; 387 - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.20.0"; sha256="0w1bwwd8pqyfvjlrx4h4mzdy2dbmnmrjxwvm9lmwgahd6b9sv5y2"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; 388 - tartare = derive2 { name="tartare"; version="1.6.0"; sha256="0jw9mqqgz19k805nqjrnxlp1q6l9sfv8d0g73jaxqdrkfjicwby1"; depends=[AnnotationHub ExperimentHub]; }; 389 - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.10.0"; sha256="021zv61b7lnhz152aq9x2m3azxhygayjsf8m85mazn90z2n4g8nr"; depends=[bsseq ExperimentHub knitr]; }; 390 - timecoursedata = derive2 { name="timecoursedata"; version="1.2.0"; sha256="09v8gsmqpcr9i8lrfc2jdddd75liz5mcyi9m7rxgjgwdl5dsp3gn"; depends=[SummarizedExperiment]; }; 391 - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.30.0"; sha256="0k4y33lki9pwk914gx8h3c64fkjgy5www3rcchn6aa1sj72ar42q"; depends=[]; }; 392 - tinesath1probe = derive2 { name="tinesath1probe"; version="1.30.0"; sha256="0rzndr203nsay6f2vqg4g34gycbwisv1m5j8ssc7mzzamc687yl7"; depends=[AnnotationDbi]; }; 393 - tissueTreg = derive2 { name="tissueTreg"; version="1.12.0"; sha256="1f1qjc37pj2jvhrprqvy6x923646mbm23b6p27ybr4plwqya2nl5"; depends=[]; }; 394 - tofsimsData = derive2 { name="tofsimsData"; version="1.20.0"; sha256="11zx5fwmis8nk6274shzw53b1ynqipbs4mba23hrngnb4j7syq9f"; depends=[]; }; 395 - topdownrdata = derive2 { name="topdownrdata"; version="1.14.0"; sha256="0rawjpiqzjvzk2b1mlbz0cwml9qh75lggk60dkrdrm7nslsbwl2j"; depends=[topdownr]; }; 396 - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.30.0"; sha256="1m12b9nagrrl1hc566543bqsc07wp1b9c73gb046ljqnzyyhkp4k"; depends=[Biobase]; }; 397 - tximportData = derive2 { name="tximportData"; version="1.20.0"; sha256="0y4nx3rnd45d3mmq6182q5xssr6xf6hr4ad7zk64q9s1y9h9gv3s"; depends=[]; }; 398 - vulcandata = derive2 { name="vulcandata"; version="1.14.0"; sha256="01b0ds1c9mmmrxf7miavjqqmh04b58ps3chf9s9la1wnrshmcq9z"; depends=[]; }; 399 - yeastCC = derive2 { name="yeastCC"; version="1.32.0"; sha256="0g77r5dblag38nlh5r1aj5n5vj9smi5509y28j0bmr47qwpmadch"; depends=[Biobase]; }; 400 - yeastExpData = derive2 { name="yeastExpData"; version="0.38.0"; sha256="0ypw7bsd0pjfkfgdphzz5ivr43h3c2c91xg8szq4m9rx3aqa7pa1"; depends=[graph]; }; 401 - yeastGSData = derive2 { name="yeastGSData"; version="0.30.0"; sha256="190vf8c8qg3khpv28w43l4c7p92rnq7qbfh2z2qbr73y4nrmwnj4"; depends=[]; }; 402 - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.28.0"; sha256="08w41bf6xzf18q1088dvc0zcqgdrv9x9sbvxbmx2r68jwn8vcv7i"; depends=[]; }; 403 - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.30.0"; sha256="0iam9nlfcil9wq782pg2dj5m2hcw3607mhda161r8bc57ddndlp6"; depends=[]; }; 404 - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.12.0"; sha256="0541flrnrpz3k8ldi2hspi5gyxk3zc6i7vvk12dgs67pp8g3pwjx"; depends=[]; }; 405 - 9 + ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; }; 10 + ALL = derive2 { name="ALL"; version="1.36.0"; sha256="0s591k9dvh5kfnxhc8agpbc40pqn1kpqqs8rpcyvf4kyzncsz5lb"; depends=[Biobase]; }; 11 + ALLMLL = derive2 { name="ALLMLL"; version="1.34.0"; sha256="0qdjfx4d33ymn42jy0jvp4xlmmwr8c5zss1x4b1rl6nmbdckh3ns"; depends=[affy]; }; 12 + ARRmData = derive2 { name="ARRmData"; version="1.30.0"; sha256="16rw9ww9vp2zs135z91vcc0qvdqsqfmymip7n46a27fahc25s3gz"; depends=[]; }; 13 + ASICSdata = derive2 { name="ASICSdata"; version="1.14.0"; sha256="0nb2im2zjz2xi7silh10jf5f7a7bvjvwn7ly0wdzc1bynnbk13f7"; depends=[]; }; 14 + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.30.0"; sha256="1ib8ax0msq77izdj5v50y5z650cs48v4r1q6xjkbz96m940fl5rq"; depends=[]; }; 15 + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.28.0"; sha256="0p4yvhdyff6ac5ffgfhap34604dhpqqzxi9c8ib35cm6xsaj27r1"; depends=[]; }; 16 + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.32.0"; sha256="0snf0rabqjx80xaj3fp3rdwdvnhx963ywpqkjvzgxcyzdz1jlnan"; depends=[]; }; 17 + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.32.0"; sha256="0n9pxzw495lgfc93b1bqxl6gfl33vvj5nch4525i8yk5xczg253g"; depends=[]; }; 18 + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.32.0"; sha256="1jj5sr5xaqxajvc6bzrg54hf79qbl71r2dr1akbdf263p1vw9yi9"; depends=[]; }; 19 + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.34.0"; sha256="0bm1wmyf3kslh720299nkffrfvshfz4n61kpl2cf8mixjr82smwz"; depends=[affy]; }; 20 + AneuFinderData = derive2 { name="AneuFinderData"; version="1.22.0"; sha256="0p68zdw86bf3ggw6rdllyyfvsmrdkwf79xh5p3g5cn5gm19c61xy"; depends=[]; }; 21 + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.24.0"; sha256="1lybp65n59gqcixyhqh49v4acl8mmmwyyicjmbks84fpjzkkqzqf"; depends=[]; }; 22 + AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; 23 + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; 24 + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; 25 + BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.0"; sha256="0ldpbjdj5xhh7sxkjrxgp7b5yayfjvw5yah4dxgbrmw37hqssd3q"; depends=[animation EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; 26 + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; 27 + CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; 28 + CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; 29 + CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; }; 30 + COHCAPanno = derive2 { name="COHCAPanno"; version="1.30.0"; sha256="1457af5xpryp1z8nwmrqrxp09lsvpwj4pg054w49c8g0ab6ani3m"; depends=[]; }; 31 + CONFESSdata = derive2 { name="CONFESSdata"; version="1.22.0"; sha256="1jhh76nccr2zd11layy68fbwcwzxx1b7f66mmdfxhv6fmiwj1bh6"; depends=[]; }; 32 + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.30.0"; sha256="0736axlg1rl3frxgh8mkxcnimz2skc8kx17z627i9ww5bl91f5md"; depends=[]; }; 33 + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.30.0"; sha256="09c317gkj53c7la3cd3x9b9hmz5zaccr5irhlnvidfmh1gp4z7r8"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; 34 + CRCL18 = derive2 { name="CRCL18"; version="1.14.0"; sha256="026j77hzj664pmdyrkcxq93bz5xlpq4vr95ps2vynhwalhi382hc"; depends=[Biobase]; }; 35 + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; }; 36 + CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; }; 37 + ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; }; 38 + ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; }; 39 + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; }; 40 + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; }; 41 + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; }; 42 + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; }; 43 + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; }; 44 + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; }; 45 + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; }; 46 + DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; }; 47 + DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; }; 48 + DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; }; 49 + DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; 50 + DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; }; 51 + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; 52 + DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; 53 + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; }; 54 + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; 55 + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; }; 56 + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; 57 + DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; }; 58 + EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; }; 59 + ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; }; 60 + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; }; 61 + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; }; 62 + FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; }; 63 + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; 64 + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; }; 65 + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; 66 + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; }; 67 + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; 68 + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; }; 69 + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; 70 + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; }; 71 + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.30.0"; sha256="1r98f7zr11xl8jilx9xbk9haq1wy5hfbrlbinf3ky7a7g6sz6b33"; depends=[minfi]; }; 72 + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.12.0"; sha256="0jq8w6hrdqwlv4ya5z4i67d21yy5ksw2lbcqippvifgqxb5impw0"; depends=[]; }; 73 + GSBenchMark = derive2 { name="GSBenchMark"; version="1.14.0"; sha256="06shm71kd75bhlibpkdhzrc3w9200wb0n7dflism4cndx6q256g5"; depends=[]; }; 74 + GSE103322 = derive2 { name="GSE103322"; version="1.0.0"; sha256="1fr766mrkxw77llcnaxz45rhdxmz9vwnylmwcr0vq6jwz2y20zrh"; depends=[Biobase GEOquery]; }; 75 + GSE13015 = derive2 { name="GSE13015"; version="1.2.0"; sha256="1fa38kgm8jb1xf81m6wsb8g9gfsd2brb2yvfqhb5s8n0bgcwys1w"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; 76 + GSE159526 = derive2 { name="GSE159526"; version="1.0.0"; sha256="0hk5yb0dzlxkf1mcg1kz6lgwff1vxpswsggmhl2zzz10qyrprb6y"; depends=[]; }; 77 + GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; }; 78 + GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; }; 79 + GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; }; 80 + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; 81 + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; }; 82 + HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 83 + HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; 84 + HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; 85 + HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; }; 86 + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; }; 87 + HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; 88 + HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; 89 + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; }; 90 + HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; }; 91 + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; }; 92 + HelloRangesData = derive2 { name="HelloRangesData"; version="1.20.0"; sha256="0hrllq2hsd92yax3xs1k1rhq1j1zx7l2aiaaxlw4drds36vi2hlh"; depends=[]; }; 93 + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; }; 94 + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; }; 95 + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; 96 + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; 97 + HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; }; 98 + IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; 99 + ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; }; 100 + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; }; 101 + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; }; 102 + Iyer517 = derive2 { name="Iyer517"; version="1.36.0"; sha256="0j6y5p95qrsbv3i953b5xmannvyaahjpvdpydwwpabxflh1rqkg6"; depends=[Biobase]; }; 103 + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.30.0"; sha256="158lyh9j2vm739a4i5bvwcrnffl30wiz2rra2a12iy75klc8bj77"; depends=[Biostrings]; }; 104 + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.22.0"; sha256="1br7rynmhhxbsdhfxssd8wsa2s5zrsfcirx5lz4mcxjjw9ks0x2q"; depends=[]; }; 105 + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.14.0"; sha256="1kl3h5adaqapkhx3bv0bg8zm05fkanwgyk8zm31shgan0br4m26p"; depends=[Biobase BiocGenerics]; }; 106 + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; }; 107 + KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; 108 + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; 109 + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; 110 + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; }; 111 + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; 112 + LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; 113 + M3DExampleData = derive2 { name="M3DExampleData"; version="1.20.0"; sha256="0qnbd53lhfq78k2v9qpkwpcf75mg9asf6765pqq2f0ivi2a4jrjs"; depends=[]; }; 114 + MACSdata = derive2 { name="MACSdata"; version="1.2.0"; sha256="1k9xslk90ikk2jz0apyvqqz5l6cwxca1cbpfzqjg28rk7md44ycx"; depends=[]; }; 115 + MAQCsubset = derive2 { name="MAQCsubset"; version="1.32.0"; sha256="047dbqd3iy2ckxhsm30h2k98krjyjfl453abpw9840jsicpf5ndn"; depends=[affy Biobase lumi]; }; 116 + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.32.0"; sha256="182i7jn3i1xf1s4hnpqz3kbvnd5l0dpnqgva1h37l9zah0fjki54"; depends=[Biobase lumi]; }; 117 + MEDIPSData = derive2 { name="MEDIPSData"; version="1.30.0"; sha256="06ip7pcxmn510i1mi3z89bkfcd8k11vmck5xy8bxrs5ck8v7f45k"; depends=[]; }; 118 + MEEBOdata = derive2 { name="MEEBOdata"; version="1.32.0"; sha256="0wig4bsmqn61hj11hzmf44ninx4n1iyvr4y4pp2pzx3aria3gpra"; depends=[]; }; 119 + MIGSAdata = derive2 { name="MIGSAdata"; version="1.18.0"; sha256="1kf16r23v6gvq0w4hkjv8y2rn0nbwssa2p210bs8i3g0rbahyscv"; depends=[]; }; 120 + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.8.0"; sha256="117shgd11rslc22kw0c5y2a9fs17csr6s101hcbh8rl3x763c3wb"; depends=[Rsamtools]; }; 121 + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.30.0"; sha256="1w20fyb2bf7hhq6zyv8jal4lvypm031j2ls9dsc3bsywxwr95ikl"; depends=[]; }; 122 + MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; }; 123 + MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; }; 124 + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; }; 125 + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; 126 + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; 127 + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; 128 + MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; }; 129 + MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; 130 + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.8.0"; sha256="00yyvm172974ij05h260fd99kk7zjhyli3c7my69x9sfzvnk26xv"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; 131 + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.2.0"; sha256="17hasz0jklv4l8fafllnhkkacrr8c4bbikdcbnfqfxsqy9am7b6q"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; 132 + NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; }; 133 + NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; }; 134 + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; }; 135 + NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; 136 + Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; }; 137 + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; 138 + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; 139 + ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; 140 + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; 141 + PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.0"; sha256="0hk7fwh456xmlfgdgp6wsdn38v1g8b18f28f0wswgxxg1hy4mhih"; depends=[Chicago]; }; 142 + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; 143 + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; 144 + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.28.0"; sha256="1pmij8f40ly40prcmcjb7xfd5fpw14s77wvf1nn2vnvq7v232zva"; depends=[PWMEnrich]; }; 145 + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.28.0"; sha256="148ygn4ak50v6kfznvrbklkr09vl117091vggmc0hzc596w4dnmr"; depends=[PWMEnrich]; }; 146 + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.22.0"; sha256="0x71whs9m2pr5fcihqql6fkaargpqfr8qkr7z7fqdwbblklzn145"; depends=[]; }; 147 + PathNetData = derive2 { name="PathNetData"; version="1.30.0"; sha256="002qx6p1vh066c2vq4dir7xvgga8nm824x59nv5gmjj65wmlg62m"; depends=[]; }; 148 + PepsNMRData = derive2 { name="PepsNMRData"; version="1.12.0"; sha256="0d4539bm507dm6v2knavacidlwsb5rhr22bb48szfcr5kbn5vk1p"; depends=[]; }; 149 + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.8.0"; sha256="0j6c301zknfvk9pkz8n3f4ckgxpfk2v4vnad1gv7vmaxz4bwnia8"; depends=[BiocStyle Biostrings ExperimentHub]; }; 150 + ProData = derive2 { name="ProData"; version="1.32.0"; sha256="0k870xnl35x8a5y2kzfkvasabanpmad1f0vmb2waax9h42y2bmdx"; depends=[Biobase]; }; 151 + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.20.0"; sha256="1mz5w6yb82s91qi8q5d14pvzq8vlpxlnvkr8mv9q4wbmq6m3rwk6"; depends=[CAMERA LOBSTAHS xcms]; }; 152 + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.24.0"; sha256="1b4d0936lrjn7jp9g9gj3jnkfrw7vw79j15xpyr8d3kqsrkn3j0q"; depends=[QDNAseq]; }; 153 + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.24.0"; sha256="1iamvkpj5gij2x7j3fixgn3djgly684wrvr888w9cfir6wf5pk94"; depends=[QDNAseq]; }; 154 + QUBICdata = derive2 { name="QUBICdata"; version="1.22.0"; sha256="15saydq9vv1lvqgvv5d51km52aqzwjx7q7ijpka6why442lrys9r"; depends=[]; }; 155 + RGMQLlib = derive2 { name="RGMQLlib"; version="1.14.0"; sha256="0l317dma9cnwhr24k65lhs26n1511chiq8fp0xx4bnxzvw3q7g5b"; depends=[]; }; 156 + RITANdata = derive2 { name="RITANdata"; version="1.18.0"; sha256="0jpw3lsm7npwn44j7ydi2630qmkjymm1hm2hv73gfk464zr40xf4"; depends=[]; }; 157 + RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; 158 + RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; 159 + RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; 160 + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; 161 + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; }; 162 + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; }; 163 + RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; }; 164 + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.22.0"; sha256="0884c8idabmpz8jyz1gpvayv2h9i164642pnk5n8a68g8djad9zd"; depends=[RTCGA]; }; 165 + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.22.0"; sha256="1daqpw0vipdagrr7p6q4h6plfa7dwk6nj421s9wa78wm8rda70s7"; depends=[RTCGA]; }; 166 + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.22.0"; sha256="0vi7kryzxj42n21xa0nmnjxyskqdqv5fmgh2bjj4fx9al4jqc4n2"; depends=[RTCGA]; }; 167 + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.24.0"; sha256="03d8b7pp2dpr07bjx952d9m6x8nn267dl9qa368gh0pv8vcwjmj9"; depends=[RTCGA]; }; 168 + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.22.0"; sha256="0ivlp5izz9rls5347lkdl6cc8q94y2s24hxbla49p514pb959pwv"; depends=[RTCGA]; }; 169 + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.22.0"; sha256="0c547sp6kpzx0s1321y61fr09r420j6sc08qd4v0jp9nd10j1mv7"; depends=[RTCGA]; }; 170 + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.22.0"; sha256="1qlnlhki58j82mz8yv4nd334xgkcq4h4hk51ma9q7fc28ssbnfwp"; depends=[RTCGA]; }; 171 + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; }; 172 + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; }; 173 + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; }; 174 + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; }; 175 + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; }; 176 + RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; 177 + RforProteomics = derive2 { name="RforProteomics"; version="1.31.1"; sha256="1lb990amjy4246v3dy75bby3xbr3as017bi0zbrqda168cm8h5af"; depends=[BiocManager biocViews MSnbase R_utils]; }; 178 + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; }; 179 + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; }; 180 + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; }; 181 + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; }; 182 + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; }; 183 + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; }; 184 + SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; }; 185 + SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; 186 + SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; }; 187 + SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; }; 188 + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.30.0"; sha256="0piqsm9mbiqaf9i0ljj64brm7qdyp7zzhxd8qm3xja0hmh69gigx"; depends=[]; }; 189 + SNPhoodData = derive2 { name="SNPhoodData"; version="1.24.0"; sha256="1x9xxg9dmmphwdm6is2hv3awk9cl9hff8zw2nvjngi2iwxdw5sys"; depends=[]; }; 190 + STexampleData = derive2 { name="STexampleData"; version="1.2.0"; sha256="1xiw6g9aidgppbsn9rsh9ckacrz8sym0j5ink7rv6pwirjnymc27"; depends=[ExperimentHub SpatialExperiment]; }; 191 + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; }; 192 + SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; }; 193 + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; }; 194 + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; 195 + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; }; 196 + SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; }; 197 + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; }; 198 + SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; }; 199 + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; }; 200 + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; 201 + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; 202 + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; 203 + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; }; 204 + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.14.0"; sha256="09ccilwf4kvwgaglk5ar5b6c7pyh3b21r0vg6ibb57ilbv85srqd"; depends=[Biobase]; }; 205 + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.14.0"; sha256="0njs301kfbchhcy4i8ldlpv7z9lsj4hm1ivb4w2r75qkaalmgi7s"; depends=[Biobase]; }; 206 + TENxBUSData = derive2 { name="TENxBUSData"; version="1.8.0"; sha256="1smvgqym0jd5m3as8pjyl9dhnfbh02sdh2sxb2hr89133fh6mx6a"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; 207 + TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 208 + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; 209 + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; }; 210 + TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; 211 + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; }; 212 + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; 213 + TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; }; 214 + TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; }; 215 + TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; 216 + VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; 217 + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; }; 218 + WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; }; 219 + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; 220 + adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; }; 221 + affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; }; 222 + affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; }; 223 + airway = derive2 { name="airway"; version="1.14.0"; sha256="16g8lcmdj57i4ggnq2kwklpnl53dwgwkajnzkkl0p3473zcxqihs"; depends=[SummarizedExperiment]; }; 224 + alpineData = derive2 { name="alpineData"; version="1.20.0"; sha256="0lbk3b4jnbhk1xbxzs7liz03gq05d3vsy762wm299gdqwhd1c2rq"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; 225 + antiProfilesData = derive2 { name="antiProfilesData"; version="1.30.0"; sha256="1bizxdj5jamf5vby1rswplljnffay2zvz85gd8prr838z22c8sb7"; depends=[Biobase]; }; 226 + aracne_networks = derive2 { name="aracne.networks"; version="1.20.0"; sha256="1h0f1n8cr3pfrnv2v37b1xlmqv603qdgc886w25vdgkplkm2i00b"; depends=[viper]; }; 227 + bcellViper = derive2 { name="bcellViper"; version="1.30.0"; sha256="1x55zqb3vbgkz608vw41h75yj76xim235vnzn4n7kk13ysfagk3g"; depends=[Biobase]; }; 228 + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.32.0"; sha256="1k9b6f9qr9w2fzlid53ij8v1ribyxa46r3wagyrdpspz0lw1chgl"; depends=[beadarray Biobase]; }; 229 + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; }; 230 + beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; }; 231 + biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; }; 232 + biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; }; 233 + bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; }; 234 + blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; }; 235 + bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; }; 236 + brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; }; 237 + breakpointRdata = derive2 { name="breakpointRdata"; version="1.12.0"; sha256="1iqi64hqj15llx97jlcj3c9ck56pjnndf3yl94pydrwx3p04573a"; depends=[]; }; 238 + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.32.0"; sha256="0zd05zj1d932llj3a08drv4gqg9s3d06c9jks0pag883sfsq91jb"; depends=[]; }; 239 + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.32.0"; sha256="0xp2s5rhm443lgwj13nwdq2mp88nkr0lizm3k640fm9h8x3xg5pz"; depends=[]; }; 240 + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.32.0"; sha256="028ldqaxcw1lgyw1c5jd01jflcfc2bdb2ibvh1yvqnd16v8gpk2h"; depends=[]; }; 241 + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.32.0"; sha256="04bj9mhhx9pcv5khb6n3zym11iga2vbz24yvk5k3bkqad7rsmi3b"; depends=[]; }; 242 + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.32.0"; sha256="0x5nj8mbg8nhpbys20ciqsi6hqd46la4zswwvqxpcivd3ksgkbq7"; depends=[]; }; 243 + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.32.0"; sha256="04wwicmwp8n5lsb0inq97kvg9dv2yw83mb1ampw4vhgrb4adziv8"; depends=[]; }; 244 + brgedata = derive2 { name="brgedata"; version="1.16.0"; sha256="0q9f3bgfnrw6pbwdpx8ya4p6wy3yn3r6p6vbamvfrj5xprnqp06s"; depends=[Biobase SummarizedExperiment]; }; 245 + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.32.0"; sha256="0fdpx3h699jwr81mddjxn0nlv726y6mbjyn6rglq8g9z07z85agk"; depends=[affy]; }; 246 + bsseqData = derive2 { name="bsseqData"; version="0.32.0"; sha256="0yvb8978nxx87x3pc8rhsxvaii08mkfd01x98mx20p8na7r79ckr"; depends=[bsseq]; }; 247 + cMap2data = derive2 { name="cMap2data"; version="1.30.0"; sha256="15va9h1q97xaqxsfd63m011fclfw6g5sq4va8x3k8w57ljvxpfzm"; depends=[]; }; 248 + cancerdata = derive2 { name="cancerdata"; version="1.32.0"; sha256="0bp4gpqcc1w7rhifmq7540k3pds3l9g1qzd3kdklp23f2y5wn9dd"; depends=[Biobase]; }; 249 + ccTutorial = derive2 { name="ccTutorial"; version="1.32.0"; sha256="1rs2pwipw1nblgybkzrhjsgb69ffzn6b6vnv8pq3svasy1dwn32f"; depends=[affy Biobase Ringo topGO]; }; 250 + ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; }; 251 + celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; }; 252 + celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; 253 + chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; 254 + chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; 255 + chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; }; 256 + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; }; 257 + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.30.0"; sha256="1k6qicydhd81wasvw27gp2p25pcrbfpp6g3aiyvdplaijch5a9nm"; depends=[cnvGSA]; }; 258 + colonCA = derive2 { name="colonCA"; version="1.36.0"; sha256="052gp2a1gfg1rv6zv3n1qw57ky6l6ilyfim6jlj0g08x1rh8mbhq"; depends=[Biobase]; }; 259 + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.6.0"; sha256="0myaa4n9zslv737q2zk0hhr3cfi18zkvh3xrg29xvq40l7jwd95s"; depends=[]; }; 260 + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; }; 261 + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; }; 262 + curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; 263 + curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; 264 + curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; 265 + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.0"; sha256="1k4fjpmgs7dfvf7bkzyb9lmzmw7jj8ayc2y3nbskap6l1xl5qpxb"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; 266 + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; 267 + curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; 268 + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; 269 + davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; }; 270 + depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; }; 271 + derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; }; 272 + diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; }; 273 + diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; }; 274 + dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; }; 275 + dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; }; 276 + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; }; 277 + easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; 278 + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.34.0"; sha256="17l82v618s2mar3j6xrp7y8glh1j2akw26m0jgagnx5ixl4mf7pl"; depends=[affy ecolicdf]; }; 279 + emtdata = derive2 { name="emtdata"; version="1.2.0"; sha256="0s5ki8pywcz72gj1gxc3y060sajl748yc4cxqspa1lbln73w3a5z"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; 280 + estrogen = derive2 { name="estrogen"; version="1.40.0"; sha256="0r6s17wbpy1s5pzvh1z40k6kmy6fcf8c42lvhsrhjzh1vi0ngk2v"; depends=[]; }; 281 + etec16s = derive2 { name="etec16s"; version="1.22.0"; sha256="14m5nhni0jmbpvhnqgip1ck4av3vh5fr88213mlfa2x4bnvghpyy"; depends=[Biobase metagenomeSeq]; }; 282 + ewceData = derive2 { name="ewceData"; version="1.2.0"; sha256="1hjmgnadwh5ikp92c390nwplvhgj08zam65lakznsjmkzigfx18a"; depends=[ExperimentHub]; }; 283 + faahKO = derive2 { name="faahKO"; version="1.34.0"; sha256="0mj2igvbydfj0zgqyf1vvj3p7xd79h3rq4cczq1hllv9nrlkw8ag"; depends=[xcms]; }; 284 + fabiaData = derive2 { name="fabiaData"; version="1.32.0"; sha256="09hsf5kf4fniy4a4kir8k9f8kvvs28d9vzaspjdbgiyh7hqfdw52"; depends=[Biobase]; }; 285 + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.32.0"; sha256="1wm1wpx292n3zn5zfq0w6i0g4yy88ixww9xbh9j7adnga7xrija4"; depends=[lumi]; }; 286 + fibroEset = derive2 { name="fibroEset"; version="1.36.0"; sha256="14rdlin8g7lby616q3idxg05gxlrgad3r4d9gf4hy8384c0hh8np"; depends=[Biobase]; }; 287 + fission = derive2 { name="fission"; version="1.14.0"; sha256="19zhcr4an9ddpjjzd93jwdkkvcd0s4qdikchyfd8rmybf98sbp3g"; depends=[SummarizedExperiment]; }; 288 + flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; }; 289 + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; }; 290 + frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; }; 291 + furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; }; 292 + gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; }; 293 + gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; }; 294 + gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; }; 295 + gcspikelite = derive2 { name="gcspikelite"; version="1.32.0"; sha256="1rb03hm57m7498s0k2lr17zd1a3g19wrjszrwll6yfh9qv9m6gmn"; depends=[]; }; 296 + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.30.0"; sha256="1a11w94n3415k3pbkb0id6j3hdz2mdkcwh30bywkrm64jlmj8f1l"; depends=[GenomicFeatures rtracklayer]; }; 297 + genomationData = derive2 { name="genomationData"; version="1.26.0"; sha256="1h2q5ai72z1yrjkl2108qs9rn8k9kmidmyx22bq4wkpjvblz8ajb"; depends=[]; }; 298 + golubEsets = derive2 { name="golubEsets"; version="1.36.0"; sha256="1np5z91y6b9d1jcsnc4qfa6gvq7lg4ih0l06lis989ya1j4733ka"; depends=[Biobase]; }; 299 + gpaExample = derive2 { name="gpaExample"; version="1.6.0"; sha256="1s019xpdc0c27x66c6b2m22mzx33cr325w3x3vpw60cgnnkp49rr"; depends=[]; }; 300 + grndata = derive2 { name="grndata"; version="1.26.0"; sha256="0i58gfmgc539m8l8d8kkh09jq1daddwxjpw0hwl5x0l3idkpr91v"; depends=[]; }; 301 + h5vcData = derive2 { name="h5vcData"; version="2.14.0"; sha256="0pqwqbfp9wfynfkk41y1lpv29a46wdwnd7asa8bnfix1lxlvs4bf"; depends=[]; }; 302 + hapmap100khind = derive2 { name="hapmap100khind"; version="1.36.0"; sha256="1d8fi14bsklbh9rd7z5wp8ni183l2as6hljbsc1gwz8bk7117v7a"; depends=[]; }; 303 + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.36.0"; sha256="1agaxkfihjpn0kvjgq9xyr3bw4y9fwfpgn4whis50hlr1mjqliv6"; depends=[]; }; 304 + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.36.0"; sha256="1dkigl3gx1yhm3lfjhpck6cll83i0glkf9ayqlpfslhgzv72avk5"; depends=[]; }; 305 + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.36.0"; sha256="1c403sh5wpn4xs6zi8a6ydy8jddlpa0a5z0zwd7bcmipl4aq0x99"; depends=[]; }; 306 + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.36.0"; sha256="1fxi79nyy07sh8lmvzhr5gd923d4gm137p71988fkfs6s43dm2wn"; depends=[]; }; 307 + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.36.0"; sha256="1s66nw97sw46jlkhlxa8a4847kgxd2bwrjjx3pah52afpz98capg"; depends=[]; }; 308 + harbChIP = derive2 { name="harbChIP"; version="1.32.0"; sha256="1dnq3mwa3w4a6333ff6gdyb2aq4hgigzb8zmvid9m3sh5js3pl6k"; depends=[Biobase Biostrings IRanges]; }; 309 + healthyFlowData = derive2 { name="healthyFlowData"; version="1.32.0"; sha256="0lp8j6m3s9lm237dqmmpcamgffgvawclrq3r7n0ln0qy3z9k65jy"; depends=[flowCore]; }; 310 + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.32.0"; sha256="0m21wv5z7y9crcvq3hh0fj5r48bb6f5vijpibj4wmj55mjlbdd0s"; depends=[]; }; 311 + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.14.0"; sha256="015k7l7da223vzplfn2ih3k6pxw1pyv1zcprmvs8ziaxkrh07v94"; depends=[Biobase]; }; 312 + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.32.0"; sha256="1ivqgc2sm98wykkixqz13jjv739rza49jkn6nx8d907ig9cxsa97"; depends=[]; }; 313 + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.34.0"; sha256="06p37yiirpf36bgnhv7amfw470aa0f2nrw2jybx3iksy1i3175q4"; depends=[]; }; 314 + humanStemCell = derive2 { name="humanStemCell"; version="0.34.0"; sha256="0lvy1n389wsc85yi7kmwq2qda0nl3hpl5bqak01fr3d6040v7g27"; depends=[Biobase hgu133plus2_db]; }; 315 + imcdatasets = derive2 { name="imcdatasets"; version="1.2.0"; sha256="1qgg2cnalx9kiv73g0n9axc6y5b25kwxbmn7cg9syvlrfn0iynlz"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; 316 + kidpack = derive2 { name="kidpack"; version="1.36.0"; sha256="094b1jhyal4h3k4ilmayz77mbjqkmn7b5bsw799jmsqyg93f4r7g"; depends=[Biobase]; }; 317 + leeBamViews = derive2 { name="leeBamViews"; version="1.30.0"; sha256="1f0lc8k14canmp124qqys6pwp9v88z7cwr7kgxi5mrzk92r2jiz6"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; 318 + leukemiasEset = derive2 { name="leukemiasEset"; version="1.30.0"; sha256="0hnqi0qm7caipjkp3asabby5jrjl57vvshnwiwqnjsf87xx19cjx"; depends=[Biobase]; }; 319 + lumiBarnes = derive2 { name="lumiBarnes"; version="1.34.0"; sha256="103iz7vjhh1w8zyb4n3kf1w9qfa7li9p2jql48cjsadvil4bfl09"; depends=[Biobase lumi]; }; 320 + lungExpression = derive2 { name="lungExpression"; version="0.32.0"; sha256="1x1hxdyiha3cbl6b87f3d9lzrdlal3lcvgyiqliijqmjphpgjmvk"; depends=[Biobase]; }; 321 + lydata = derive2 { name="lydata"; version="1.20.0"; sha256="0sl5a35fgac7lzi5y52fif7s5chi4jskg21a46gcyi8xv6k8lj4f"; depends=[]; }; 322 + mAPKLData = derive2 { name="mAPKLData"; version="1.26.0"; sha256="01dfn8jd5rq14fk7s14i4z6rn59c82qzdy12lhn2srzxdz0jhwf2"; depends=[]; }; 323 + mCSEAdata = derive2 { name="mCSEAdata"; version="1.14.0"; sha256="0sa3c0b3i3qf9ng7475lszl6lxl33hb6m3fcxlval06qifsdbc39"; depends=[]; }; 324 + macrophage = derive2 { name="macrophage"; version="1.10.0"; sha256="1kxnrz40b0magbl9dlpx2p216hnf91lkax0pzxsg9ci4xn3xz844"; depends=[]; }; 325 + mammaPrintData = derive2 { name="mammaPrintData"; version="1.30.0"; sha256="00f2kl84xa1f84p03nqa139p753ln1fdxc4nih3f4nnzbjxl5chb"; depends=[]; }; 326 + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.38.0"; sha256="0xx3sqapk29f5wyr7zslhyay22ly53q2ysdgvl2k888j9glblh9l"; depends=[]; }; 327 + mcsurvdata = derive2 { name="mcsurvdata"; version="1.12.0"; sha256="0cf3symwf91gfrb5rv0vyfmin3l27jc0gws558y3g75h13la2zxm"; depends=[AnnotationHub Biobase ExperimentHub]; }; 328 + metaMSdata = derive2 { name="metaMSdata"; version="1.30.0"; sha256="1cshvd3s5d1zxipw4yyfi45lsi6abx12j3n39qi2wp405yx53bnp"; depends=[]; }; 329 + methylclockData = derive2 { name="methylclockData"; version="1.2.0"; sha256="1qfwjw2z40v3dk6ygchwnp61fzxa4wyjd7aq8l4i5krylxzwj1ic"; depends=[ExperimentHub ExperimentHubData]; }; 330 + miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; }; 331 + miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; }; 332 + microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; }; 333 + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; 334 + minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; 335 + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; 336 + minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; }; 337 + mosaicsExample = derive2 { name="mosaicsExample"; version="1.32.0"; sha256="0jnak8dsdkyxbr5bzd1d17lyksmvk6jl6p0hh4gdkxfv476by05y"; depends=[]; }; 338 + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.32.0"; sha256="1sppdbcdd20nd19887x4bfsciqmh6gffv6ikaqq21k7lkraidb4c"; depends=[]; }; 339 + msPurityData = derive2 { name="msPurityData"; version="1.22.0"; sha256="1v1hdgzz9v7sy0hjpimy3jaj42zhb2lxr3612qb07n0a4rl7k700"; depends=[]; }; 340 + msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; }; 341 + msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; }; 342 + msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; 343 + msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; }; 344 + mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; }; 345 + muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; }; 346 + mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; }; 347 + nanotubes = derive2 { name="nanotubes"; version="1.10.0"; sha256="0rfq4z3cyx3skgrnrv94x5vxxijjrycim79q42anyk8f6p52yfsw"; depends=[]; }; 348 + nullrangesData = derive2 { name="nullrangesData"; version="1.0.0"; sha256="0qcmmrwkdxlf33dlwdj1wi0b7s1kq6fw87ssc6c20wlzq5izxhnl"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; 349 + oct4 = derive2 { name="oct4"; version="1.10.0"; sha256="1ayjjx9rnsg8s6gnsbcymg5rl2c9hv16q0gfgwrfz56vz4j1lwpz"; depends=[]; }; 350 + optimalFlowData = derive2 { name="optimalFlowData"; version="1.6.0"; sha256="1g11hanznd30f9payhb91z8zv9w2l0qicxmrq0ykgxmsmbw6hg44"; depends=[]; }; 351 + pRolocdata = derive2 { name="pRolocdata"; version="1.32.0"; sha256="1wj50c0xaa8nqxzvvhkvfnh6bncq54crjrczad1xxsizik1vz0yn"; depends=[Biobase MSnbase]; }; 352 + parathyroidSE = derive2 { name="parathyroidSE"; version="1.32.0"; sha256="03jv5jsh6yn53kf9qvlgkqrwh5647p5jnwaz4lqn5lc14q9b2qd9"; depends=[SummarizedExperiment]; }; 353 + pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; }; 354 + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; }; 355 + pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; }; 356 + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; 357 + pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; }; 358 + plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; }; 359 + plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; }; 360 + ppiData = derive2 { name="ppiData"; version="0.32.0"; sha256="0dkg5n492rmzpmbpd59gh6ab8y2j1hvwcy1na919napjccwmq88b"; depends=[AnnotationDbi graph]; }; 361 + prebsdata = derive2 { name="prebsdata"; version="1.30.0"; sha256="0qqlizp029zgh5gsy9spc7a5l6wd80d2q15p1y8hk6ghgnnj13ka"; depends=[]; }; 362 + preciseTADhub = derive2 { name="preciseTADhub"; version="1.2.0"; sha256="1ya8g899scnjfdidzdqkdgvn2xgsn98cgv7lnbcvnw7cg1ilzxh1"; depends=[ExperimentHub]; }; 363 + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.22.0"; sha256="0bkw08cq559z5mban238nwi917zkdysk3gjv9rqafq02ksgzn261"; depends=[Biobase]; }; 364 + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.22.0"; sha256="0a13q40bw3f1s9vv3xikbqzs71nns9hvfkf3acqjw0ydq0ca0ns1"; depends=[Biobase]; }; 365 + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; }; 366 + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; }; 367 + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; }; 368 + ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; }; 369 + pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; }; 370 + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; }; 371 + qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; 372 + rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; }; 373 + rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; }; 374 + restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; }; 375 + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; }; 376 + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; }; 377 + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.0"; sha256="16qscpjbbphrd1qfp85r9bw8v98866kzsf20fk270m2aq378y4i8"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; 378 + scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; 379 + scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; }; 380 + scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; }; 381 + scpdata = derive2 { name="scpdata"; version="1.2.0"; sha256="11nqfjk5cy77c720f035qc7l5kryf8fkc0rg6l6j646rcrk1dbmz"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; 382 + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.26.0"; sha256="0axgbixlr3zrjlhxrsbcv4fxl42bnd23gwfpngj62pi12mk4v54j"; depends=[]; }; 383 + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; }; 384 + seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; }; 385 + serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; }; 386 + sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; 387 + seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; }; 388 + shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; }; 389 + signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.0"; sha256="13xfdg3si14zmrbib691301hhxxj3d3xyfkab5l4skspzgpd64cx"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; 390 + simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; 391 + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; 392 + spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.0"; sha256="0c1ayv3mf31smmqfys85xjpadkavjixw545gkalibvxrkxmq0qb3"; depends=[AnnotationHub benchmarkme BiocFileCache cowplot DT ExperimentHub fields ggplot2 golem IRanges jsonlite plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; 393 + spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; 394 + stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; 395 + stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; 396 + synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; 397 + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; 398 + tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; 399 + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; 400 + timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; 401 + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; }; 402 + tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; }; 403 + tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; }; 404 + tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; }; 405 + topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; }; 406 + tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; 407 + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; }; 408 + tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; }; 409 + vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; }; 410 + yeastCC = derive2 { name="yeastCC"; version="1.34.0"; sha256="0h2z51ky3lmwbmryp7lk4njsmk4xhgrjgvgfj87gy6y2pns9vf10"; depends=[Biobase]; }; 411 + yeastExpData = derive2 { name="yeastExpData"; version="0.40.0"; sha256="04x7spq9wh3kc5b0qblam312zazghkmvzlkypwqdd5g2vfrkracl"; depends=[graph]; }; 412 + yeastGSData = derive2 { name="yeastGSData"; version="0.32.0"; sha256="0ic024xjg3xpgbrwvgvjfx35ljs3lanfkncnxcp71k81dzn5009l"; depends=[]; }; 413 + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.30.0"; sha256="0j9bfwwwnp3ik7fr8m8pngv2pjgqg1j6mpa4pm5519kr031zk540"; depends=[]; }; 414 + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.32.0"; sha256="0hdf1fysyndm0dpyh3r491vgqdrwpqysn0xibdr77rcwlbdshp6x"; depends=[]; }; 415 + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.14.0"; sha256="150i53k2khdszk35hxxq5wsnzfdvf4kzqrmlb1946rjg6plm61pi"; depends=[]; }; 416 + MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; 417 + MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; 406 418 }
+2077 -1986
pkgs/development/r-modules/bioc-packages.nix
··· 4 4 # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix 5 5 6 6 { self, derive }: 7 - let derive2 = derive { biocVersion = "3.13"; }; 7 + let derive2 = derive { biocVersion = "3.14"; }; 8 8 in with self; { 9 - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.22.0"; sha256="15v5n6d3mnj9d86swkh9agfvrsd065dldaywm1adwmkhhk525wmd"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; 10 - ABSSeq = derive2 { name="ABSSeq"; version="1.46.0"; sha256="17vnyck6bf39g2ax9zx41pp7hbdz08n7jb81whmmfb3spv31w7qj"; depends=[limma locfit]; }; 11 - ABarray = derive2 { name="ABarray"; version="1.60.0"; sha256="15x05x45psy4a80p7nk8ylwkdy31q503jifpl6v74nmdlnbkhsw2"; depends=[Biobase multtest]; }; 12 - ACE = derive2 { name="ACE"; version="1.10.0"; sha256="0nl8xczyldl5nwx2lh6p8bhznc110849frlippqjczgf992clj5b"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; 13 - ACME = derive2 { name="ACME"; version="2.48.0"; sha256="1p7z17990kcc33i59l0r34p920as4l3jc21a0flp8f7prr2hdfkg"; depends=[Biobase BiocGenerics]; }; 14 - ADAM = derive2 { name="ADAM"; version="1.8.0"; sha256="12m44jlnw1gd0c5rx0mayr10xkrmwiidv8jd51m4p5ni5r3012a2"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; 15 - ADAMgui = derive2 { name="ADAMgui"; version="1.8.0"; sha256="18nikr1slrqk4c0ks0b833mzs9ms1p1j52ywvrrvfj6qazgzqdbs"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; 16 - ADImpute = derive2 { name="ADImpute"; version="1.2.0"; sha256="0pj1i0nm6cd1200fzgyf5xx9mrh6iin51rl8m06k1yhrqbb6ixkw"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; 17 - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.32.0"; sha256="0r92bks74y57jb0w388rd9sbjmrlwlgramyai129ba8lcrzf1mpv"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; 18 - AGDEX = derive2 { name="AGDEX"; version="1.40.0"; sha256="0ly39k0347dhxaqkw9fphxy8v5d0dd4zalb0jyxmzfa7zckgnw45"; depends=[Biobase GSEABase]; }; 19 - AIMS = derive2 { name="AIMS"; version="1.24.0"; sha256="0i31fw9w4qf37nclxgd4dnlrrjw3hdj5aal66pl88xpigg8lcjzx"; depends=[Biobase e1071]; }; 20 - ALDEx2 = derive2 { name="ALDEx2"; version="1.24.0"; sha256="17g231s6fmxswfkb540sjmmw4qkq0c4r2l1wsgxdn12h0dbiy60l"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; 21 - ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 22 - AMARETTO = derive2 { name="AMARETTO"; version="1.8.0"; sha256="0q0f4j52iildrli04y34m2nm6x4x4h0gzqs0mjaqc8al7cqm8pp5"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; 23 - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.18.0"; sha256="1iyr1lzig3arrwc0gb5n35v487jgqnbzvx8c7xvb6ji1qfpsfa1d"; depends=[]; }; 24 - ANCOMBC = derive2 { name="ANCOMBC"; version="1.2.2"; sha256="0wd3y9i1y2ji9s6s108ibkfdjwvq96jm22lrbwbshyh2vc5q35l7"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; 25 - ANF = derive2 { name="ANF"; version="1.14.0"; sha256="0fam3qrik5n51rcm4rm89fyq718wjswfr11dmsvhiyfdb7m25471"; depends=[Biobase igraph MASS RColorBrewer survival]; }; 26 - APAlyzer = derive2 { name="APAlyzer"; version="1.6.0"; sha256="0rvfgdvlr8qlb3c4wb0l3yyffky0z04ijpal7krqbz8f6w5ynv1j"; depends=[DESeq2 dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; 27 - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.32.0"; sha256="0ni3vblcadhwxaq1pf1n9jn66cp3bqch68ww4c8zh19zagil2y7r"; depends=[ARRmData]; }; 28 - ASAFE = derive2 { name="ASAFE"; version="1.18.0"; sha256="1833d7zncd86f8fmpqdmr0w9rgccy9d8s79qmg6zg6fhdkbka4qh"; depends=[]; }; 29 - ASEB = derive2 { name="ASEB"; version="1.36.0"; sha256="0hda532m9wpgc3zv2q96cgrjnhsy5an04h5x7pddydkc8yl9hlli"; depends=[]; }; 30 - ASGSCA = derive2 { name="ASGSCA"; version="1.26.0"; sha256="172v87hx1kagy4qh5w8vn823kx96xjcgfzdpf738n7z92pyianrc"; depends=[MASS Matrix]; }; 31 - ASICS = derive2 { name="ASICS"; version="2.8.0"; sha256="0dxby6g9vpkxql6vz0v7h4272jxnpcjnh344i4wpw9pgkpnflhy8"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; 32 - ASSET = derive2 { name="ASSET"; version="2.10.1"; sha256="15xigwd92qmp2xvfc0s8z66jmb8mrf13dlcifgy284hpa8wpnh2c"; depends=[MASS msm rmeta]; }; 33 - ASSIGN = derive2 { name="ASSIGN"; version="1.28.1"; sha256="1zb70vylpwwvnkmk6z5pars81hk9nxsnp45aq8pv4wl8y7v2mvha"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; 34 - ASpediaFI = derive2 { name="ASpediaFI"; version="1.6.0"; sha256="1gjl3hm8hjva29b7hf0z4a993rng9x9f78v9hjhd9zj7s2jbdnpx"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; 35 - ASpli = derive2 { name="ASpli"; version="2.2.0"; sha256="16l86v7i3gvpb722rym7yynz3yslbz5qm73hyaqfp6yhim78sq9b"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; 36 - ATACseqQC = derive2 { name="ATACseqQC"; version="1.16.0"; sha256="168g3xkhjzrfjpa1ynifdyfhsxx3rpyrbybsarlzr9kslw1cdkxl"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; 37 - AUCell = derive2 { name="AUCell"; version="1.14.0"; sha256="0qdac3qalcki20r90k40cc8d0lfywzn9pffg9d719yvs7nrsfdjr"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; 38 - AWFisher = derive2 { name="AWFisher"; version="1.6.0"; sha256="0s529rb3m4jhns0r1qgydsdqa25317zdr1djvwbfbkvb4s6bqndb"; depends=[edgeR limma]; }; 39 - AffiXcan = derive2 { name="AffiXcan"; version="1.10.0"; sha256="1rff9hj74rv7wz4fngq64yrml3n3k6jry7ng4sdiv10s3xbdjgp7"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; 40 - AffyCompatible = derive2 { name="AffyCompatible"; version="1.52.0"; sha256="1xwz22wf2smsvmd0d5lfadbsgscnl3fl9msypy2mml38k048p6vj"; depends=[Biostrings RCurl XML]; }; 41 - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.38.0"; sha256="1dsx5kk1b86cx59p5x81c78qpbxri0q5fh7f2c61lkqd0rd2vakk"; depends=[affy]; }; 42 - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.42.0"; sha256="0q47fpg02a50qpv6r3vqvbyy5d7gp2k2nq7qbb643g4ihphxhz5x"; depends=[affy affycoretools Biobase limma preprocessCore]; }; 43 - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.30.0"; sha256="1mn6975npncmfjlpjs3s2pgsrm32xgvnyl2vh1922l6vra97dkrc"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; 44 - AlphaBeta = derive2 { name="AlphaBeta"; version="1.6.1"; sha256="0gmh6bi7s27d0cpq6vnszbpzc9jpy75bmdymgix0zz28cky0ky99"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; 45 - AlpsNMR = derive2 { name="AlpsNMR"; version="3.2.3"; sha256="1cx6b8fq6w1nxi6wazm65k3q2fah37xh6ng0y9hs69kj0nblnyy1"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; 46 - AnVIL = derive2 { name="AnVIL"; version="1.4.1"; sha256="11vc09fbzk6m6l3wfn4nmksx2fd7jq066af71av8sk6vifg6119f"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; 47 - AnVILBilling = derive2 { name="AnVILBilling"; version="1.2.0"; sha256="04bq4bwy8gy7ibjkfqx5r2k3qpchx0gg6x1rn3s5b2ij6bdabbaj"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; 48 - AnVILPublish = derive2 { name="AnVILPublish"; version="1.2.0"; sha256="0biz57cn1lq9hbk8vg47fa8xx00prxrc0ml90a1ssx9yj5gcfgng"; depends=[AnVIL httr jsonlite rmarkdown whisker]; }; 49 - Anaquin = derive2 { name="Anaquin"; version="2.16.0"; sha256="1d9bn904ii15zdvkgrkv87an2j21k3f7iph6rwl0nfqx3v52i1k6"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; 50 - AneuFinder = derive2 { name="AneuFinder"; version="1.20.0"; sha256="0m6wphlriq7y21ih1p2kzml5jzcic79jc52kkk59dkjj8j88yllk"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; 51 - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.54.1"; sha256="0fcammls431pgmp47r85k0zh3bz42bajbqdmafd31kpqncc1ijal"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; 52 - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.16.0"; sha256="0799jja6v7l3jsi26wbjalkr5lriaxid05xb5g36iq93myhaj0sa"; depends=[GenomicRanges lazyeval]; }; 53 - AnnotationForge = derive2 { name="AnnotationForge"; version="1.34.1"; sha256="0g75b2adak87raw0vn20fjh5980y7svknh8ih1sn4fwryglp4ggg"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; 54 - AnnotationHub = derive2 { name="AnnotationHub"; version="3.0.2"; sha256="09drr13qqdj7b711axmlxv2gkaw17cvkhl0g2rh7w0b2vx13fg7y"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; 55 - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.22.0"; sha256="0jnh3d8v00xxnqcfmzhha75fai9cr1lrjm153i1cy2z9mi31rzr1"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; 56 - ArrayExpress = derive2 { name="ArrayExpress"; version="1.52.0"; sha256="0ivmy1zfxagk29ss8vjl2nj6mjsab9l6ddmpji7s3ay4fqmppji5"; depends=[Biobase limma oligo XML]; }; 57 - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.42.0"; sha256="1v6ifl5vz2d4kxhbqp7fj3lwi6jffk0ngjy3kpqbj0la5wjpy93n"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; 58 - AssessORF = derive2 { name="AssessORF"; version="1.10.0"; sha256="09m4naw8x2fd6nzyk1l17qhj1xgxl5da05s9gi80shdp29ka35gi"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; 59 - Autotuner = derive2 { name="Autotuner"; version="1.6.0"; sha256="030iaqrd6flfydv1lpzwmf10p4bcy9m40i96xd9q08mjzvc05fa4"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; 60 - BAC = derive2 { name="BAC"; version="1.52.0"; sha256="1pf7910gi09k3yrz4byn5mhf3r2g19aal7nlzsya9b5z6wdnl7hb"; depends=[]; }; 61 - BADER = derive2 { name="BADER"; version="1.30.0"; sha256="0a00qawc0hsiifq6z3psj0kk5xwxmj7vs8gpw6hya5kzgldci64c"; depends=[]; }; 62 - BAGS = derive2 { name="BAGS"; version="2.32.0"; sha256="0m6fjakkzfhl99hykbgdqid36q5wnyydkibjqxrdcr9bkn0m1x9q"; depends=[Biobase breastCancerVDX]; }; 63 - BANDITS = derive2 { name="BANDITS"; version="1.8.0"; sha256="1a3v0b1ls58d91chfj5d11vj1xfh0dkm1n6cin6x21z77vzxcsvx"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; 64 - BASiCS = derive2 { name="BASiCS"; version="2.4.0"; sha256="18mywqr5x1v9wjj5csp31ycfvi968akcxr011bqxkdlxa8s71lxz"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; 65 - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.22.0"; sha256="11l2z18mdr0b7fcbggixj7zk7015akpw4aj1g8qqfbfpq6l0ry6x"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; 66 - BCRANK = derive2 { name="BCRANK"; version="1.54.0"; sha256="1l2ij4948w022129pvk1y1ajn3x2dmvjz7pd6bzpyiggs2mcvkw7"; depends=[Biostrings]; }; 67 - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.10.0"; sha256="1y86sw3x82355d9jx14kxwlpzswz8a5r5p26ky8b62jfp70dy2lq"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; 68 - BEARscc = derive2 { name="BEARscc"; version="1.12.0"; sha256="08zpd4mcsz6hfr2dbhv1bg470ai6bjhnqk06i1d5dysad7k4fhfm"; depends=[data_table ggplot2 SingleCellExperiment]; }; 69 - BEAT = derive2 { name="BEAT"; version="1.30.0"; sha256="0r9am053n1jc9wdqp8ri4c2nf41c75mj7sr3j1i08x9zd46kp47z"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; 70 - BEclear = derive2 { name="BEclear"; version="2.8.0"; sha256="0w18livng2gcmjgvws7pix3gsnj237rs34sgwxsfmn8p5vfx8b30"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; 71 - BGmix = derive2 { name="BGmix"; version="1.52.0"; sha256="1gp40ddspblpszzm4k4r7ysgx883iwdfqc5ds23p2q1ml9idwgvv"; depends=[KernSmooth]; }; 72 - BHC = derive2 { name="BHC"; version="1.44.0"; sha256="0aaawm7h3ppyyhd7hi14rpynagnxx4730f5vxizj5bpzwbclp6h9"; depends=[]; }; 73 - BLMA = derive2 { name="BLMA"; version="1.16.0"; sha256="0qbsffivgsrizksxxnzb63w8zk10vkhsbhnip83pssh1sx5ikf02"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; 74 - BPRMeth = derive2 { name="BPRMeth"; version="1.18.0"; sha256="1mrh2fkz2iihvqmarp4k7ghgk4lnjfqlvchg72hf8mndi137f6s5"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; 75 - BRAIN = derive2 { name="BRAIN"; version="1.38.0"; sha256="04y0dmgag8748nps3lzkff98bm3gkxi901jld8ns9f55d6nrr7x4"; depends=[Biostrings lattice PolynomF]; }; 76 - BRGenomics = derive2 { name="BRGenomics"; version="1.4.0"; sha256="0vjr4yk7dynpfndmr1diw63g9arxyxb9x2y80km14wk2b57907l0"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 77 - BSgenome = derive2 { name="BSgenome"; version="1.60.0"; sha256="1jhissp9ad1rn2p0bzr3yslbn84yqbaqgnn5p9hyacwr7mr091cn"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; 78 - BUMHMM = derive2 { name="BUMHMM"; version="1.16.0"; sha256="1nqk14f7rkwdl3p0nixlpsxd4i6jf5wdsrz61w22afvsz401ppa6"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; 79 - BUS = derive2 { name="BUS"; version="1.48.0"; sha256="14i9wqf5dlidxkga56zfafmqga0pq4qsfwb91jnqyszwn2hkhnlb"; depends=[infotheo minet]; }; 80 - BUScorrect = derive2 { name="BUScorrect"; version="1.10.0"; sha256="0nnsqcds2z2b290g76fhw598ivpan0nnv51d19l9b8jvfnqcmqhw"; depends=[gplots SummarizedExperiment]; }; 81 - BUSpaRse = derive2 { name="BUSpaRse"; version="1.6.1"; sha256="0dkbh4pnpmwrhjrgfqnsrbc2hj8rgb5wr1vlb67yvrqvxapqpi54"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; 82 - BaalChIP = derive2 { name="BaalChIP"; version="1.18.0"; sha256="0zdd0xc16m9kf8wzf9xj03g4smdrpykjsja0pd5438ji0q30zhp4"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; 83 - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.20.0"; sha256="05sbmb8f012p027n7wpajv0irh45pkmwrh5g1i2ycg6h581j1g8l"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; 84 - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.36.0"; sha256="02d679rkf5qvgpgi1chp57b1j23q3xqh5x8677h0d5b9z1l0pcrz"; depends=[RCurl RJSONIO]; }; 85 - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.28.0"; sha256="1bcnnprpaabrpbbyw0kmlbhphp320qv5apsf935libv9gsam3029"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; 86 - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.20.0"; sha256="0cnigjid1yl191pihjg22yzfgqhw8flx6p32vjib09fvpib4pamh"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; 87 - BatchQC = derive2 { name="BatchQC"; version="1.20.0"; sha256="052h7wjwn4p2asbmpinwwi350x7hwrsbxxk0kigjg3mld7qvf5q5"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; 88 - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.18.0"; sha256="126pm9l51fdza9090xqs3q21rwlz3fbzfn9p3p3071wzd4p7vpn6"; depends=[Biobase]; }; 89 - BayesSpace = derive2 { name="BayesSpace"; version="1.2.1"; sha256="0r4406gxpknrf8nzxjsiilyys81d1sb8zcn2i7x30gbfskaxhdwz"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; 90 - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.44.0"; sha256="1fn7c4135y1yxg3dvsqrax98bcrl6f1vbdhqxdv206ijyz07wvcg"; depends=[]; }; 91 - BgeeCall = derive2 { name="BgeeCall"; version="1.8.0"; sha256="1byciy7vzbdkdgaim10s9qb7zlxsywbhcsrka31gm0rm9ljqc665"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; 92 - BgeeDB = derive2 { name="BgeeDB"; version="2.18.1"; sha256="1ziq180yfpdqwhjdzkwjjhwzn3kb0gkj6q0a26c7a30mcfb50w11"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; 93 - BiFET = derive2 { name="BiFET"; version="1.12.0"; sha256="1fwy7ws0bn67557s0kcw8pbln2jg834n6kfbs8297ps07nxr0lpj"; depends=[GenomicRanges poibin]; }; 94 - BiGGR = derive2 { name="BiGGR"; version="1.28.0"; sha256="1y9659pxm65w51zvrz36girb3qvfc64zijjkxmg6xn4pbc8vv1wf"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; 95 - BiRewire = derive2 { name="BiRewire"; version="3.24.0"; sha256="0p6mr67mkw54490sv4dvkyh8l0xkpjfbqy532vi8l41i40qg3gry"; depends=[igraph Matrix slam tsne]; }; 96 - BiSeq = derive2 { name="BiSeq"; version="1.32.0"; sha256="17wdjm3pshd7mq3ppgpm85vnpca2lj8xihlhjsmqcyhl5kvq7dfp"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; 97 - BicARE = derive2 { name="BicARE"; version="1.50.0"; sha256="0j3gs4xcdgaca2c62jf2h86skbbxm1c9g2khs5bsa8fmkskr6vl9"; depends=[Biobase GSEABase multtest]; }; 98 - BioCor = derive2 { name="BioCor"; version="1.16.0"; sha256="135rga7mwpzy8ypvriqpbmlh9l5yf61s9s1sa9615qfab14jh06b"; depends=[BiocParallel GSEABase Matrix]; }; 99 - BioMM = derive2 { name="BioMM"; version="1.8.0"; sha256="0daqlm04bywl202msbrsfl8ddlksqmfkpnxvwxhzpxyjd7aagbvh"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; 100 - BioMVCClass = derive2 { name="BioMVCClass"; version="1.60.0"; sha256="04pld93nffbci47dnf0awmcmhlfzv599ggcd7hvq78w41ac60qv8"; depends=[Biobase graph MVCClass Rgraphviz]; }; 101 - BioNERO = derive2 { name="BioNERO"; version="1.0.4"; sha256="1yj0pavyfrj2gsvaj1dkgmznibm2appxjx9rk5qjslhslmm5b05b"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; 102 - BioNet = derive2 { name="BioNet"; version="1.52.0"; sha256="15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; 103 - BioNetStat = derive2 { name="BioNetStat"; version="1.12.0"; sha256="16xlfng9m8xvm831c2x6zmjc0gavlfiy9pnza55hdv86888fcnbg"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; 104 - BioQC = derive2 { name="BioQC"; version="1.20.0"; sha256="04akp94p0d0zid55m1b1k3qlw7iq914pcg57lihgj3pa92n1sc5l"; depends=[Biobase edgeR Rcpp]; }; 105 - BioTIP = derive2 { name="BioTIP"; version="1.6.0"; sha256="1i6r8px0fmdjx8frpljppwql74mhx08ibvhs9y3qk91ck5h3f0js"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; 106 - Biobase = derive2 { name="Biobase"; version="2.52.0"; sha256="1sg8w8860zhlz9s1pf75xa8asd2hyqsj13fh5xc37hf5yqdfkavr"; depends=[BiocGenerics]; }; 107 - BiocCheck = derive2 { name="BiocCheck"; version="1.28.0"; sha256="1h0l5w33c9jpc20pynq634qmx8jbfa802d7jslmf4haljmrxm4a1"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; 108 - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.4.0"; sha256="0dh1flm5chsdcihljrg6znjskqkp0qyjh39hsv4zq0frf1rm97j7"; depends=[dplyr httr memoise readr whisker]; }; 109 - BiocFileCache = derive2 { name="BiocFileCache"; version="2.0.0"; sha256="0ymg4hmabk233qgassld62achjylm12rnidxbakfkx4dvvlbhxxv"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; 110 - BiocGenerics = derive2 { name="BiocGenerics"; version="0.38.0"; sha256="1kv7lzmyki3hi771v01nml1v1hzz8pyhqqv0xcdzqy354mlgx4m6"; depends=[]; }; 111 - BiocIO = derive2 { name="BiocIO"; version="1.2.0"; sha256="0skwnpxl6fkqihidpqrfzzh7b05x11j6jwkiinmhggmv0ggjb5ph"; depends=[BiocGenerics S4Vectors]; }; 112 - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.10.0"; sha256="0cjidi18wjip9xzx83890wjk40vvjq06prf1ag4m2kac47w01r7v"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; 113 - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.12.1"; sha256="1ix09a39z7y2cj0y8qsd66ka8a8y8q79w08l4jv1yhhn9h4va89s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; 114 - BiocParallel = derive2 { name="BiocParallel"; version="1.26.2"; sha256="1y459cygq21f3igsdlxz1zlyad8qbl2qlr5h2d2dpnvblykvf48i"; depends=[BH futile_logger snow]; }; 115 - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.10.2"; sha256="1sfp1nxlwbbbpx2iwvyk9p10jdy2vxhgn2b5fy5blayzjjlb3d80"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; 116 - BiocSet = derive2 { name="BiocSet"; version="1.6.1"; sha256="0nmrg9cgq8l9w467y364jghnvym05abpj8pyj90grmrib2xc5sj2"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; 117 - BiocSingular = derive2 { name="BiocSingular"; version="1.8.1"; sha256="16gkwq8fb8jdchpnlzq2hz3i74a6pzbnc1bf93282h11mp7qr58l"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; 118 - BiocSklearn = derive2 { name="BiocSklearn"; version="1.14.1"; sha256="148qck2g2b7ic15iin4ga18qcmf5x1snnhpin9cfy4yyw3nzipyi"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; 119 - BiocStyle = derive2 { name="BiocStyle"; version="2.20.2"; sha256="0p2wdq5vrx63ndghl9ww428z2lwnv5y88xmcr51by2g6vcj3brcf"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; 120 - BiocVersion = derive2 { name="BiocVersion"; version="3.13.1"; sha256="0rsw8g4g1pcjw1zbx8x17yd3drhxqk4sx3cy3ddzy5731hl6mbfi"; depends=[]; }; 121 - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.18.0"; sha256="1a32bwgnxaw0gv2gij2p4rm0a6l06jjhidvfz2v4k900pz1w79av"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; 122 - Biostrings = derive2 { name="Biostrings"; version="2.60.2"; sha256="0ai0fg0w4l0a7avbafdbqjgjpg91myxalwrg2i3ixm1l2lyyfyah"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; 123 - BitSeq = derive2 { name="BitSeq"; version="1.36.0"; sha256="08nkxi1071bd1i7f82af52bawllhmqxf38nmq35drcqzvraz16mm"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; 124 - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.0.0"; sha256="0rfmb9jkn4qdi3bp9hxczbgypyar46l5s8k9d7y60jlj2dp0rrv4"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; 125 - BrainSABER = derive2 { name="BrainSABER"; version="1.2.0"; sha256="05bhqjkjm3qhs0daj11jbhn5l5sd7x7pznzh7vfmahmjcdlr9s0w"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors SummarizedExperiment]; }; 126 - BridgeDbR = derive2 { name="BridgeDbR"; version="2.2.1"; sha256="1np0img4dkhlq0y781frww1i558na1jq416jg5kj2i6pq367a3h8"; depends=[curl rJava]; }; 127 - BrowserViz = derive2 { name="BrowserViz"; version="2.14.1"; sha256="1ifhfsxqi9x62wc19w850z9wqrm9dyq7yxcdd4fk51cql3cxn1b9"; depends=[BiocGenerics httpuv jsonlite]; }; 128 - BubbleTree = derive2 { name="BubbleTree"; version="2.22.0"; sha256="1bm175yl1m8ir6n06rzahr41sa4k2qnnz04n0srq39q9dnjfj4qm"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; 129 - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.56.0"; sha256="01yh2cnxvmca4hipg5r4byzn6jfvm6rdpzfp6fy2hdc4ag4v61qb"; depends=[]; }; 130 - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.56.0"; sha256="1qfqigpsjmzszmwzip1iaw039c34byh35hhaa7xib27ismbk69kz"; depends=[BufferedMatrix]; }; 131 - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.0.1"; sha256="01z3a548dp62q6d1pwp4r009ky3x2561y43a9s3xpf0vh40qz09x"; depends=[IRanges Matrix S4Vectors]; }; 132 - CAEN = derive2 { name="CAEN"; version="1.0.0"; sha256="0b5xdxw1nz79ifz397izkzz0d3a4jh4mykzbskjvqzakhv4sxs03"; depends=[PoiClaClu SummarizedExperiment]; }; 133 - CAFE = derive2 { name="CAFE"; version="1.28.0"; sha256="1zxl5v17f1pd4mrxhf2hkalr71iasiwydvgs90m4w2cjqlyvcdxa"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; 134 - CAGEfightR = derive2 { name="CAGEfightR"; version="1.12.0"; sha256="05qn060pbx90xgwp60jfvjgkv3q0sr5vsnnyxr63dnjr46dq6f18"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; 135 - CAGEr = derive2 { name="CAGEr"; version="1.34.0"; sha256="1c3j1618kca94j8xi3zghfxzv1vi6syglk2ymkapqdg4dv9ji1yx"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; 136 - CAMERA = derive2 { name="CAMERA"; version="1.48.0"; sha256="12267smsjdbp789cmxm31j3xh69q7pmi4hqq0k30f6br2icxdlxy"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; 137 - CARNIVAL = derive2 { name="CARNIVAL"; version="2.2.0"; sha256="18jqanb7p8zylxvzp97s6zx1qbz5cl39jqllbz1v7k7pfayby580"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; 138 - CATALYST = derive2 { name="CATALYST"; version="1.16.2"; sha256="1vw8x54hwgcyn29k81zcvawawy2iy2qgp49gjpb830q04gx6yc6h"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; 139 - CAnD = derive2 { name="CAnD"; version="1.24.0"; sha256="0rgxcd62rxdy5ga0g82xdr370d3vlkmivs6xy2dp8zid2p0i5f6s"; depends=[ggplot2 reshape]; }; 140 - CCPROMISE = derive2 { name="CCPROMISE"; version="1.18.0"; sha256="0zshwwhwacz3kbb23x8agz8xckyxlba3h4gfxxm6ff70l4xmy8nl"; depends=[Biobase CCP GSEABase PROMISE]; }; 141 - CEMiTool = derive2 { name="CEMiTool"; version="1.16.0"; sha256="1xdhy5f7p9j527pawkdgcf9xhi0pwgwr2rgfrykl467grd13g8dr"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; 142 - CFAssay = derive2 { name="CFAssay"; version="1.26.0"; sha256="1k4kdlw2nf3iliwnhh4sqk1803i945h5s3yiij12bqyv0psnzw1k"; depends=[]; }; 143 - CGEN = derive2 { name="CGEN"; version="3.28.0"; sha256="1pv45malc3bjsz1vkrfw20q29gg9wj4ahvdc663zhfmd1ciba23a"; depends=[mvtnorm survival]; }; 144 - CGHbase = derive2 { name="CGHbase"; version="1.52.0"; sha256="1p87k4vw981k97d9bckmprrfg55jwd91658rgxzjj8hnschf28a4"; depends=[Biobase marray]; }; 145 - CGHcall = derive2 { name="CGHcall"; version="2.54.0"; sha256="1zik04y2q0anzy85l0b4ryzkxpfx2fnmpwp5s7akyk1jfl2r8gw7"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; 146 - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.46.0"; sha256="0x2gfay4xzql94lxn7n54xsbph8cq5rlb8jn5zi83v6cf6f4ymfk"; depends=[Biobase CGHbase CGHcall]; }; 147 - CGHregions = derive2 { name="CGHregions"; version="1.50.0"; sha256="0gk7grck9va0773db3wyjgpsk8nkxsz6nbshqs1ymy9qls1i10vz"; depends=[Biobase CGHbase]; }; 148 - CHETAH = derive2 { name="CHETAH"; version="1.8.0"; sha256="01mvlbgdiz8skx14bw1g7l2x2jz99gx4li2rm91fimwdwgfqhd3m"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; 149 - CHRONOS = derive2 { name="CHRONOS"; version="1.20.0"; sha256="1mzy7v0xcldfz5aw8bdaia8aahcladay70537w335q51wgqzszh8"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; 150 - CIMICE = derive2 { name="CIMICE"; version="1.0.0"; sha256="1xms5x0hdci3m0vhb078ywwjgzzwp0zr1mnqs96q7jwp7398xy24"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; 151 - CINdex = derive2 { name="CINdex"; version="1.20.0"; sha256="16lmpcwlsqj1v84wqzk87hqd2p89n5mq5izpwf6rvv9smcw94df0"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; 152 - CMA = derive2 { name="CMA"; version="1.50.0"; sha256="1zza675lrpisxq918f1aj8hfcy463mfwyl8iss9rfa0zdnymsybv"; depends=[Biobase]; }; 153 - CNAnorm = derive2 { name="CNAnorm"; version="1.38.0"; sha256="10vlxkg0lww5vnm3lql9d4yn4pi09lcpvv681z6mbq86krl7jga0"; depends=[DNAcopy]; }; 154 - CNEr = derive2 { name="CNEr"; version="1.28.0"; sha256="13w0gsfm7k29dp5nb0c9sb2ix506ph6dixsjis6xxcz6acq7lg2k"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; 155 - CNORdt = derive2 { name="CNORdt"; version="1.34.0"; sha256="0i062h7rvv86p2ab9iqgmv9352i47rlgdqxqwsmbmdaxv42xcsqi"; depends=[abind CellNOptR]; }; 156 - CNORfeeder = derive2 { name="CNORfeeder"; version="1.32.0"; sha256="1gi50bfn7hkh5mcli8hnaasczw8dw41cnc60nhd30q6618dj4287"; depends=[CellNOptR graph]; }; 157 - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.34.0"; sha256="1m4flyywlbjxr0wk9ws24ga3s3a72d8hs44dyzv2q7q2xq854aac"; depends=[CellNOptR nloptr]; }; 158 - CNORode = derive2 { name="CNORode"; version="1.34.0"; sha256="0wknhgnckv3jvcbikhf8d6s8m14pgwqvywy38z590v362m4hyn8z"; depends=[CellNOptR genalg]; }; 159 - CNTools = derive2 { name="CNTools"; version="1.48.0"; sha256="1lirzqmqdfzy350zjvyjd2fg682pqv7c2p01w26w5yihqfn5rap3"; depends=[genefilter]; }; 160 - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.24.0"; sha256="0vwwh4yxw72hczql621fa9hpmh8i9sdnpx7x1rlm1h69c4rrwvjd"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; 161 - CNVRanger = derive2 { name="CNVRanger"; version="1.8.0"; sha256="0amp2p25ha0wjmd0bk14h0kwbgcf6n5v3ishby3j470nrrynq1sc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; 162 - CNVfilteR = derive2 { name="CNVfilteR"; version="1.6.2"; sha256="17xv5rlz8avgb7ljfrww4ffi05142iwnavgz3h1w49m1b27112vl"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; 163 - CNVgears = derive2 { name="CNVgears"; version="1.0.0"; sha256="1a07l4g01nkgfkpw8n80sjmxfwvjkp5zl28nz2mm4mgj8kd482xs"; depends=[data_table ggplot2]; }; 164 - CNViz = derive2 { name="CNViz"; version="1.0.0"; sha256="1c5pxxyi5hvcd9pc3nlmwixnjr0iic7qm4cw3f84cw40sslrvzzq"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; 165 - CNVrd2 = derive2 { name="CNVrd2"; version="1.30.0"; sha256="03pa0y8rn3jsjw3c93182p4rf966sbn65nv1vywzvkdlraxi6jmi"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; 166 - COCOA = derive2 { name="COCOA"; version="2.6.0"; sha256="1bm45k4c5ykyvwlzywb8kfwsml1b1pq0xh7q7jncgzmm9p0151zk"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; 167 - CODEX = derive2 { name="CODEX"; version="1.24.0"; sha256="0kbmkbgdg16awqv8c5y8pcxyid0w05hb9wwv2ava4p0bcr22pfls"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; 168 - COHCAP = derive2 { name="COHCAP"; version="1.38.0"; sha256="1pa4pd3j1x4s7150q91v8gbz2d43wh62lks1misff1fj8ipshd16"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; 169 - COMPASS = derive2 { name="COMPASS"; version="1.30.0"; sha256="0x2bsm3n4w24rn8mmyv0ximgxxk3dr1x1dcv6dmm5jh7a803jnln"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; 170 - CONFESS = derive2 { name="CONFESS"; version="1.20.0"; sha256="1wh1wh7zss6hm7xh6gmxml9snashfl12c1xlxsgm4r30r2crivci"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; 171 - CONSTANd = derive2 { name="CONSTANd"; version="1.0.0"; sha256="0lbb47j79bsbb6m31x31b5n3cf0s5d8phgs245306kal0z8bxx7n"; depends=[]; }; 172 - CORREP = derive2 { name="CORREP"; version="1.58.0"; sha256="071whnm5qx96hff158x6x22wxha6my2zaj37h1b9342jp54p5sjy"; depends=[e1071]; }; 173 - COSNet = derive2 { name="COSNet"; version="1.26.0"; sha256="00x0pngb1m9r4mx531s2b2fb108ni59v7f8qirh76p0ar080rfsp"; depends=[]; }; 174 - CRISPRseek = derive2 { name="CRISPRseek"; version="1.32.0"; sha256="016qhphif69m2z9g0blwmbd93gzf950r3ng7v4h6lcdg9pf7an22"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges reticulate rhdf5 S4Vectors seqinr]; }; 175 - CRImage = derive2 { name="CRImage"; version="1.40.0"; sha256="18zb0jyrpm49g7wn1hgsj9dzp7s2mvfw4lnbqbj5qnz6nd6wv9wd"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; 176 - CSAR = derive2 { name="CSAR"; version="1.44.0"; sha256="09sxx2wdwjqxvwfbjwqziq0dv28aw59gpxgs4dwyv9ygsq0zqs0w"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 177 - CSSP = derive2 { name="CSSP"; version="1.30.0"; sha256="0j06zq2qyfsigcrdx024a4lfqb13yhxq9y489vqq4wah16bfcs5n"; depends=[]; }; 178 - CSSQ = derive2 { name="CSSQ"; version="1.4.1"; sha256="0x96pj55kprfmw6zfib9i05yv2100ywadfglvmd5dhkfb2rmsaqw"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 179 - CTDquerier = derive2 { name="CTDquerier"; version="2.0.0"; sha256="0nwfigg62whiif2dyp61npsnpkwrlydbq3vmnp3l8h3zswqqypg3"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; 180 - CancerInSilico = derive2 { name="CancerInSilico"; version="2.12.0"; sha256="027fbcg8laxd3zi2ppcliz29ly19din8pvfl7cak3kwv17rdbda4"; depends=[BH Rcpp]; }; 181 - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.18.0"; sha256="1bd8m959jbys8qkyr4z246highg5lfbn2gxah81ya2fk4fxn4jqa"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; 182 - Cardinal = derive2 { name="Cardinal"; version="2.10.0"; sha256="1n6k8g1ln3m604hrfxzyfvfwn61kl4lq4kd2rk56fbdamyra8x79"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; 183 - Category = derive2 { name="Category"; version="2.58.0"; sha256="0f76pb7h8qc51mca5pq00m9p02sbkcj6ywfzli20qai2ykpfr71x"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; 184 - CausalR = derive2 { name="CausalR"; version="1.24.0"; sha256="0944av5ibrqwqd2915sm1zwv6kxqm3r1y06qz7j3v9wvj0cjj6hb"; depends=[igraph]; }; 185 - CeTF = derive2 { name="CeTF"; version="1.4.5"; sha256="0x83h2ddllc26mhv0k94j3cgszmqdgz7cd8z9gf7l4is94nfs3kv"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment WebGestaltR]; }; 186 - CellBench = derive2 { name="CellBench"; version="1.8.0"; sha256="1bfgyz6ls8psihyhppdjwdfvhp27n71s7xp51j9pr76csdyqmkq6"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; 187 - CellMapper = derive2 { name="CellMapper"; version="1.18.0"; sha256="12y40vz4580qd4jl7qr7da0srd00pahsbr4hz6vg5dnxx4ismvgf"; depends=[S4Vectors]; }; 188 - CellMixS = derive2 { name="CellMixS"; version="1.8.0"; sha256="0k3i0gvqi06drzmr1q1xwlk7sd2zw63ribkz6r0f4qzw5v32063x"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; 189 - CellNOptR = derive2 { name="CellNOptR"; version="1.38.0"; sha256="0k63yvwg02ppn7c4axm46pcv668771ilza88i6gz1aljpp4h6csj"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; 190 - CellScore = derive2 { name="CellScore"; version="1.12.0"; sha256="1lmb7g9j2xd637swnqxrkjxrwn82nv2pxqlqkwi4b1saipjvpjhh"; depends=[Biobase gplots lsa RColorBrewer squash]; }; 191 - CellTrails = derive2 { name="CellTrails"; version="1.10.0"; sha256="0gi8yksgaf068bka0n85dw8ccz9mbg6mrvipr6frlbxzapdj2v38"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; 192 - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.2.0"; sha256="1505jfc8fnp2xrfr2fykwdm2hzadivgfy5440ynvzva8gkdnj1h2"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; 193 - CelliD = derive2 { name="CelliD"; version="1.0.0"; sha256="1710f83w6hirn861qmnn2namicyy9738l2rryza1j5d33iv82rmj"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; 194 - ChAMP = derive2 { name="ChAMP"; version="2.22.0"; sha256="1c3qls8bd6xq6gby962jj5p0niwsa7s3yxrpi15lsgvcdchq6d0w"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; 195 - ChIC = derive2 { name="ChIC"; version="1.12.0"; sha256="0ii992knxs043h0yzwg04x1arcm9f30hphyk0brwar1irawhsh4i"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; 196 - ChIPComp = derive2 { name="ChIPComp"; version="1.22.0"; sha256="1kfxjh1mynrgqsy2q6byf03cbymqc8w7l7672iyd0wj5qzlif4h5"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; 197 - ChIPQC = derive2 { name="ChIPQC"; version="1.28.0"; sha256="05k9pln5yfq00i5qrcm7z5wyri827447pai7f6miqam4pc9npamg"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; 198 - ChIPXpress = derive2 { name="ChIPXpress"; version="1.36.0"; sha256="0b69c680y0x3h6rrsibyqvfb4py7lyidgw3qm6x9sf5l8jb8isbn"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; 199 - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.14.0"; sha256="1kd8aj3vsylr5xqiq25arf5x3zjfqz9r2x22vai2aj7dzlcj7mmf"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; 200 - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.16.0"; sha256="0fbrf5s6pz115djm7xw95k1d0p7svi40aacbb3d52wmx5azwj424"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; 201 - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.26.4"; sha256="1iqzm7pifl9zrw3s06i6h85n1p01pd06vh1a93izyfhgybxn262d"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; 202 - ChIPseeker = derive2 { name="ChIPseeker"; version="1.28.3"; sha256="18hdgml80770c0xgd06zrl8px1ql9fa65rirfkq07z7rzpnd23rw"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; 203 - ChIPseqR = derive2 { name="ChIPseqR"; version="1.46.0"; sha256="1mf51s05g0cg75yvp6k18lfwq8bs396xa3g7csbr93q8fgmjzl5q"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; 204 - ChIPsim = derive2 { name="ChIPsim"; version="1.46.0"; sha256="15ipz9s8yv1i4zk5szfm0y5c6iwlp54zx6xh0rjxa3v81vrvw0qb"; depends=[Biostrings IRanges ShortRead XVector]; }; 205 - ChemmineOB = derive2 { name="ChemmineOB"; version="1.30.0"; sha256="0hr8l3ccgys3hjb1f68ldv0yblblxyhr8f7fhnlpw4d7bi6akmsf"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; 206 - ChemmineR = derive2 { name="ChemmineR"; version="3.44.0"; sha256="1z59npqk7hnqzhjdnry6lfqlyxfzwqprp7bmbdzs4rp22pzcv1v8"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; 207 - Chicago = derive2 { name="Chicago"; version="1.20.0"; sha256="0dkwy6pfvzd7g4qmhjl24ypn92l78w1zy0ajhcxgg39f7zsq883x"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; 208 - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.46.0"; sha256="0vxhnw52j0wq9qxdpphh9383g0sh4rkqqw91x83pnxvp8j349yh4"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; 209 - ChromSCape = derive2 { name="ChromSCape"; version="1.2.62"; sha256="1l681lq3211ly4rkcipbwz207w2rg1djmzzxwpvxqwkyjq7drbya"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges ggplot2 IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment Sushi tibble tidyr umap viridis]; }; 210 - CiteFuse = derive2 { name="CiteFuse"; version="1.4.0"; sha256="1id9lnfzvcpv4mvvxm5q7q0f1yv7qcgn4ipdzfn5hg6w5v0riid4"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; 211 - ClassifyR = derive2 { name="ClassifyR"; version="2.12.0"; sha256="1w18m7q4p55kgzr7h0ikdkr9kk5ygvjcfqv12z5nawjv6hib58cv"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; 212 - Clomial = derive2 { name="Clomial"; version="1.28.0"; sha256="01hxwqp29mmmz4f8ii8c7w2hzi44dkd86043dzsdvlywkqsw0130"; depends=[matrixStats permute]; }; 213 - Clonality = derive2 { name="Clonality"; version="1.40.0"; sha256="0wzkidwl5gbr45f71ca4azhd2hgikvkf8nx759gilw51a63pvmd4"; depends=[DNAcopy]; }; 214 - CluMSID = derive2 { name="CluMSID"; version="1.8.0"; sha256="0b9rfrzgaxhm0mrqfqqmbpkkdyy26n6c7y7ahn1r4kj56jfp7vpp"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; 215 - ClusterJudge = derive2 { name="ClusterJudge"; version="1.14.0"; sha256="1zn4xv3sv7mb7bq7765qprgi67716sl4y7f7qq9q2pclsldqxn4q"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; 216 - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.20.0"; sha256="13zfji0fx16b62hswnpj0c0wwvb4sfd7lyymkc83nf0dnhws3qn0"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; 217 - CoCiteStats = derive2 { name="CoCiteStats"; version="1.64.0"; sha256="10jm5r6jq9vs4gm4h6jmrcdnxji03lr85i0ccpvc66k6svdqbnp1"; depends=[AnnotationDbi org_Hs_eg_db]; }; 218 - CoGAPS = derive2 { name="CoGAPS"; version="3.12.0"; sha256="0smswyc948jz515h4nf36zhphvy4fv6glh74chji8bazhv5k17pa"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 219 - CoRegNet = derive2 { name="CoRegNet"; version="1.30.0"; sha256="11zw1wy1zd3dw2swg6ccipwblj82xglkd6lmyxf60y1s70cbsxzq"; depends=[arules igraph shiny]; }; 220 - ComPrAn = derive2 { name="ComPrAn"; version="1.0.0"; sha256="0cabgv8fi54flycax69pan8hcxrsaa9qk8ps0643xhhymqr0gdgx"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; 221 - CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 222 - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.8.0"; sha256="0jl96msj1njdrvngg68s50vmphvhi2lfwlv34x07pcdzgkjjs41f"; depends=[Cairo circlize clue colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; 223 - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.56.0"; sha256="163nr50nyvwrsajmm0cgxp70pqk61mgw0k7ams694hcb42162j8b"; depends=[ALL Biobase cluster]; }; 224 - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.8.0"; sha256="0gza6a06jf161r88f4sm4l51qpb94x05wapy0750w76pv148blq9"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; 225 - CopywriteR = derive2 { name="CopywriteR"; version="2.24.0"; sha256="0pacs714d9b1fdz68pp9ca0x77d376s19lxb82np4l9fgx0rgkxp"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; 226 - CoreGx = derive2 { name="CoreGx"; version="1.4.2"; sha256="1xn4fj6djyg5w8yg7170wfj0mllazmdxhwng013zfg1qynpxx20f"; depends=[Biobase BiocGenerics BiocParallel crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; 227 - Cormotif = derive2 { name="Cormotif"; version="1.38.0"; sha256="0mkbj09rdxvcf4dmj5ri2099rs5k5391pdiw8kgj79framjjzmdg"; depends=[affy limma]; }; 228 - CountClust = derive2 { name="CountClust"; version="1.20.0"; sha256="0prnv10zib8m21n5iv8gjkin09j9kj96aidjaylgpzc3a7f74286"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; 229 - CoverageView = derive2 { name="CoverageView"; version="1.30.0"; sha256="1xhirbjdw09cqm4xvysxqicvqjbahavwvs7shg4cb05gwyd2ha8g"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; 230 - CrispRVariants = derive2 { name="CrispRVariants"; version="1.20.0"; sha256="1izsd5q8s9fi17vbs3lgp06d682lfcarca68n3x9wq9gs2bzlrss"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; 231 - CytoDx = derive2 { name="CytoDx"; version="1.12.0"; sha256="0yanb35bwywd5z8drd6vsw1dca8cp4znwnip7zvw8ssa41ix2zqg"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; 232 - CytoGLMM = derive2 { name="CytoGLMM"; version="1.0.0"; sha256="1s5sbiagi0zgdldpwkm72mlmrv85dzvbc299p9q1yrxiyaq3gmbp"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; 233 - CytoML = derive2 { name="CytoML"; version="2.4.0"; sha256="0ixy7mmnipk8wy61wz6qy7jfbc5zhs6p5iqaii8hdprjnb841ri7"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; 234 - CytoTree = derive2 { name="CytoTree"; version="1.2.0"; sha256="1vmqfs0nns9qfx726z67vbxg2lhi4zsnznk9d4hmm1k0acv96k62"; depends=[Biobase BiocNeighbors cluster flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; 235 - DAMEfinder = derive2 { name="DAMEfinder"; version="1.4.0"; sha256="18h1xgj2yz89y154cnfqnr6rfnp11ccfvsvslpdxfjb7icix682n"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; 236 - DAPAR = derive2 { name="DAPAR"; version="1.24.8"; sha256="12cfblknbp0119jmnzlh4q6bzvj4sinch49rrh7502gf7j20jidc"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; 237 - DART = derive2 { name="DART"; version="1.40.0"; sha256="18s0sbbsplh2kbn5j4d9h438kmjys31bcl4vnrazvcrvmbqf3bzd"; depends=[igraph]; }; 238 - DECIPHER = derive2 { name="DECIPHER"; version="2.20.0"; sha256="0mr7glkx2d37l9nszs52m0kycpm14vxl5gdp3z7i5j7yig1sw2nk"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; 239 - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.12.0"; sha256="09fyr3i3dv6dg08cffkg6s5cdkz51s19p9ql52v98vw4xn8v9hka"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; 240 - DEFormats = derive2 { name="DEFormats"; version="1.20.0"; sha256="1hkrqrqyk9hdlsl7zyy6vjv2q0v7h11yvc4l41zlc9zn7acqf27j"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; 241 - DEGraph = derive2 { name="DEGraph"; version="1.44.0"; sha256="1fyxm479g0dm52hshxrxrazsmz64irr2pbx08y7shb8xwk15ln8x"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; 242 - DEGreport = derive2 { name="DEGreport"; version="1.28.0"; sha256="1qxiz68ph4sknrvd3qfx2fqag74gfl9j22hkaaj3hdmskzk5rd4r"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; 243 - DEGseq = derive2 { name="DEGseq"; version="1.46.0"; sha256="05hjmdg8cjwymzsgr0ra29znyx20jmrsn10m4nkndipiacs701ha"; depends=[qvalue]; }; 244 - DEP = derive2 { name="DEP"; version="1.14.0"; sha256="1larrj4wyb48wfnn1wd9kib6bklm41ggs4fw85z021rmsag37dkx"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; 245 - DEScan2 = derive2 { name="DEScan2"; version="1.12.0"; sha256="0f40ffrxg54d0a3jqv2dp09i6d979ycl89ipphk6gm1gi6a1xab3"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; 246 - DESeq2 = derive2 { name="DESeq2"; version="1.32.0"; sha256="0r1brwmj7av0bj72jajn27vx3zs1bgg8qfbhf02fln6kf7im4kaz"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; 247 - DEWSeq = derive2 { name="DEWSeq"; version="1.6.0"; sha256="0v48w4va545gi6mkyfwfqs92zc656m6298hh2pk32w49148hbc04"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; 248 - DEXSeq = derive2 { name="DEXSeq"; version="1.38.0"; sha256="1zywh30f4j4rj0f9w6yk5xr9mvdbg8gicy3wsb8yxdnamadyr7x4"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; 249 - DEqMS = derive2 { name="DEqMS"; version="1.10.0"; sha256="1p7xbg02z1nilvr0byh63gzslq20wfhd104mp71ghnab2kkngq31"; depends=[ggplot2 limma]; }; 250 - DEsingle = derive2 { name="DEsingle"; version="1.12.0"; sha256="1ddk7rixfy93pycaarzg9397md942dqhv54cyig0i0n45b5gzv0f"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; 251 - DEsubs = derive2 { name="DEsubs"; version="1.18.0"; sha256="1zk4zn1mmchrqddwxcma0w4z00m5c4xsh6qpz07xccrz7xdn58gj"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; 252 - DExMA = derive2 { name="DExMA"; version="1.0.2"; sha256="0gfpqhb2ynrhdm17mb30b5xihy674gd5cmy3l1n4g0dkmd018hdh"; depends=[Biobase DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; 253 - DFP = derive2 { name="DFP"; version="1.50.0"; sha256="17mnn1svygksb0fs074pfp1mchxz39sp6j57k5wrz75rnwbd3b6b"; depends=[Biobase]; }; 254 - DIAlignR = derive2 { name="DIAlignR"; version="2.0.0"; sha256="0x0f0zjk7wshk34xf8cbh8si46n2ji7i06m3ihsp2bfmcdfs82ak"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; 255 - DMCFB = derive2 { name="DMCFB"; version="1.6.0"; sha256="0zsqzkv8zvbn4qq6vmvkc4prx0w0w99sqz5pwr2vadsns53dif9i"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; 256 - DMCHMM = derive2 { name="DMCHMM"; version="1.14.0"; sha256="1is7q7jyrvam677s9lgrbyfj4dhij07lc5agh7q80b0hjx2g3ql6"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; 257 - DMRScan = derive2 { name="DMRScan"; version="1.14.0"; sha256="0b4ni5gn36sp8scm535ka51n67pvlzzf0dpzdbjcsrdz5rpma16s"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; 258 - DMRcaller = derive2 { name="DMRcaller"; version="1.24.0"; sha256="1hhb26vmnc4cn35474kkc56ahpdj23mhi9dcgv4r095ba7z6kw32"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; 259 - DMRcate = derive2 { name="DMRcate"; version="2.6.0"; sha256="0l50i2qp1yngzc6j7qskr7nk3x9ja7rynkm8bp522c3994kmhig8"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; 260 - DMRforPairs = derive2 { name="DMRforPairs"; version="1.28.0"; sha256="1khfcs8z60g6m64awacpaplci3c3pv9n3z0ajj5h7cf3nn841qxp"; depends=[GenomicRanges Gviz R2HTML]; }; 261 - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.8.0"; sha256="1dls7m5szdyd2hd7w6mwbj5bsn9ij1zzm0gr38bylkj1jp82xjdw"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; 262 - DNABarcodes = derive2 { name="DNABarcodes"; version="1.22.0"; sha256="1wiqmzjcb7flp7ldcgbx91asxxrmm1rg9pcfljniab9xcsldhksp"; depends=[BH Matrix Rcpp]; }; 263 - DNAcopy = derive2 { name="DNAcopy"; version="1.66.0"; sha256="0mgq814f6c2271d2lxg763bsnv3ma4ari5xa4x1rbksv8yvcjc4d"; depends=[]; }; 264 - DNAshapeR = derive2 { name="DNAshapeR"; version="1.20.0"; sha256="09271m79llrs48h8723qsvl4aigjwaif6is0mkdk2dpqi80aza3k"; depends=[Biostrings fields GenomicRanges Rcpp]; }; 265 - DOSE = derive2 { name="DOSE"; version="3.18.3"; sha256="09blmrgzxaknn263zf3zqc5yx27wjwznsr8lqsm118k4wpfxj504"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; 266 - DRIMSeq = derive2 { name="DRIMSeq"; version="1.20.0"; sha256="1rswd4lks4v6nfkkiqn2spicjpwsbi2sg8wz44bhf2idxc5mlad4"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; 267 - DSS = derive2 { name="DSS"; version="2.40.0"; sha256="094z7n8m4mygvxpl7vlh8ls4aggrxcmsc0wh8khnz61sfsv2q15l"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; 268 - DTA = derive2 { name="DTA"; version="2.38.0"; sha256="10fnqvip3sxxpxq6y9565gkrzk2gr4269l5xcdph4awrjlq6pshz"; depends=[LSD scatterplot3d]; }; 269 - DaMiRseq = derive2 { name="DaMiRseq"; version="2.4.3"; sha256="0mr1nzhyiz9h57v51m1k58wz2iyw0ir5xilsgg3y5qdx6b5alyl9"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; 270 - DeMAND = derive2 { name="DeMAND"; version="1.22.0"; sha256="1amm5fr7jsrlq0qzvf10ibfnkq2xwrn2rf5j7b7ssp3srs98bir3"; depends=[KernSmooth]; }; 271 - DeMixT = derive2 { name="DeMixT"; version="1.8.0"; sha256="0z2fb2j4a04fa23d32dvp3cxid8phmwbrd8d66c8llivxppcdd35"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp SummarizedExperiment truncdist]; }; 272 - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.34.0"; sha256="011v141dvi62f8ff6svq481x0sngxdkfryl1jr1xrbi69wjyr074"; depends=[ggplot2 limSolve pcaMethods]; }; 273 - DeepBlueR = derive2 { name="DeepBlueR"; version="1.18.0"; sha256="0hrqdvqaz7z38pl71pzk9py6bx79rks8cc5mg2biwcansmyk1rvp"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; 274 - DeepPINCS = derive2 { name="DeepPINCS"; version="1.0.2"; sha256="1p27ff1d8wxirm781mp59n6hn39m30dvq2r0qwp7i5ny3ww5gav7"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; 275 - DegNorm = derive2 { name="DegNorm"; version="1.2.0"; sha256="12ilvdcfjh9r2q8i28kwbbh26mm583fh2n3kznvp1v6xx53zxcg1"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; 276 - DelayedArray = derive2 { name="DelayedArray"; version="0.18.0"; sha256="0w632262dqzcnvq9s6jvc7naz93dayx51fsv05s0zb6cjwygbqjr"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; 277 - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.8.0"; sha256="06w8asdcaksp7q20jb5x7fp3a0gz2nk2a0zdjvq39a1m53xa804d"; depends=[BiocGenerics DelayedArray S4Vectors]; }; 278 - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.14.3"; sha256="1zxs2wjnsq9w1cl4andsd7y9xsdnl1an55khw9viaq758m7hhbcn"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; 279 - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.0.0"; sha256="17mpd658k0pmrd757i6x2a9rg7w4x8cwn704h8ayfmbki8zc11di"; depends=[BH DelayedArray dqrng Rcpp]; }; 280 - DepecheR = derive2 { name="DepecheR"; version="1.8.0"; sha256="04vxc43p3kpsx0vksk2nwmy9p56h35z2mc8j9p2wm29zaz1y8j3p"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; 281 - DiffBind = derive2 { name="DiffBind"; version="3.2.7"; sha256="01jfxcj5c0088vvsi3pz8fs0ka6n12l2j8s1d0rpqwa1y0444x7z"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; 282 - DiffLogo = derive2 { name="DiffLogo"; version="2.16.0"; sha256="1xblwwlddr5093qimzgz30sxpaaiqf32q2daj76i6zhfp4x4wvzi"; depends=[cba]; }; 283 - Director = derive2 { name="Director"; version="1.18.0"; sha256="0yd3k687zlvx3d8ng0i3z1339cmzjb9vwi3sc5jq07xl0yqinvmn"; depends=[htmltools]; }; 284 - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.34.0"; sha256="0ikmj0300lfzj6q1vyahfyx5kwi5h59mds7ym4f2j1bbxqzy6ssl"; depends=[BiocGenerics IRanges S4Vectors]; }; 285 - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.8.0"; sha256="0wa7y1ffamip7zyg4fvk6fr6lkbif148iv7mwk1m0g7gkzvnfgwa"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; 286 - DominoEffect = derive2 { name="DominoEffect"; version="1.12.0"; sha256="1rlhg0bbiy5bc6ivipkrdfvl2idb3mjx7hinrqv31vf6qlfh56m9"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; 287 - Doscheda = derive2 { name="Doscheda"; version="1.14.0"; sha256="11qw60vl4h4pav9w59hfcwjc5gc6rvwj9b4rrdw3dkd5kpkamshh"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; 288 - DriverNet = derive2 { name="DriverNet"; version="1.32.0"; sha256="0qivc30n3cq2f1kfb21azd7kwx1gmy63sy4xyk6mwwgc3zgd5xic"; depends=[]; }; 289 - DropletUtils = derive2 { name="DropletUtils"; version="1.12.3"; sha256="11s0dk4m4qinbfnhsilxna536ys1ndkzd2cjig8sbky4dvx7r584"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; 290 - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.34.0"; sha256="0qbaqxn8m7l0nzmmr0icn8fqgc3v21rraqnxrjz7nbh9fzc3klhd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; 291 - Dune = derive2 { name="Dune"; version="1.4.0"; sha256="11ya7jf6gc5z0xb7cn793dl4bhw83xwsr6k294w41xrkvqxw4iif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; 292 - DynDoc = derive2 { name="DynDoc"; version="1.70.0"; sha256="08nk3rf43djas3vpr1rnn9b529frqhd6bxd2wzjh8z01fqi8fx4h"; depends=[]; }; 293 - EBImage = derive2 { name="EBImage"; version="4.34.0"; sha256="1z3cxxg593d66nczz5hh2hdj1d87wc0lxrzc5sn6bp43n351q8h3"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; 294 - EBSEA = derive2 { name="EBSEA"; version="1.20.0"; sha256="1sxqcwz6vm2rcw2k8hc0np1zxmffy1shkfllh4jbrdh0516j2jbm"; depends=[DESeq2 EmpiricalBrownsMethod]; }; 295 - EBSeq = derive2 { name="EBSeq"; version="1.32.0"; sha256="0h5v3vrb90zim80bdnr3aw58g3h7zjqa4l9i0jwx5j19ywf54fdz"; depends=[blockmodeling gplots testthat]; }; 296 - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.26.0"; sha256="0fzi7060yap5628d7v0qay18k7k6wkjfbv3sfl1xisfkz0rdjvii"; depends=[EBSeq]; }; 297 - EBarrays = derive2 { name="EBarrays"; version="2.56.0"; sha256="1k1kl0m7wzaqpv7i20pfav2a6jf93bhri4w7qdikmvkf011n9422"; depends=[Biobase cluster lattice]; }; 298 - EBcoexpress = derive2 { name="EBcoexpress"; version="1.36.0"; sha256="1df87rl026rzcrhiacqcpwg3wp9r13lxhb7vscw6jmcwyfnhhdmi"; depends=[EBarrays mclust minqa]; }; 299 - EDASeq = derive2 { name="EDASeq"; version="2.26.1"; sha256="0pakcbkalhhqz3d9lpfx3hscf53k24mlmrywxxzfg43yq57srkql"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; 300 - EGAD = derive2 { name="EGAD"; version="1.20.0"; sha256="05gfzi1lrryx7ssxd7415c2bsmnm33ca32v7hw1dd5jgv30nbcpi"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; 301 - EGSEA = derive2 { name="EGSEA"; version="1.20.0"; sha256="0wxql39p42craa9z209l9pxr3kqb99kq7y9cwwvkdhp5q2bsfsrj"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; 302 - ELMER = derive2 { name="ELMER"; version="2.16.0"; sha256="07yl4xcymk4km5zglj9hcgdb0hjjrnr374yp6r59j8cz76smym92"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; 303 - EMDomics = derive2 { name="EMDomics"; version="2.22.0"; sha256="0m11n9wj6rh5x0fzih8s661h0dziss907bwbc9hnmsjkabvvl39s"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; 304 - ENmix = derive2 { name="ENmix"; version="1.28.8"; sha256="0fhknqi4mfzg3fzy8krvhcrd2a18wsqdf4b257d5rc3hzj26rvqb"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irr matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; 305 - ERSSA = derive2 { name="ERSSA"; version="1.10.0"; sha256="0ph4bscydwn1a9w91b3ab1lj31kn7ddi9wfm6bhdv949pb4p48xn"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; 306 - EWCE = derive2 { name="EWCE"; version="1.0.1"; sha256="0dyzvkqi0dzrjhs50p1d9kcyyin4vvjjrdjjh7mxwpr4kirxghdh"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; 307 - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.20.0"; sha256="1zaz8h2mzh0fnfq9h3yvhnj2mpafd36vwlfa5c92piddrrk9g9q8"; depends=[]; }; 308 - EnMCB = derive2 { name="EnMCB"; version="1.4.1"; sha256="0xhcz7r7vg1n08phdd43i6likn791lrkjzy0wi1hcswmw6p5i7h0"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; 309 - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.10.0"; sha256="11p41y2s5iydi7q3fk992jgmx8r0xnh0pv1idjgcpyn36hh2k5x7"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; 310 - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.22.0"; sha256="1dd17jlcwvrhzkz8wjcwb3vwkjj137d9gaw036zn9rjhbpznzigm"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; 311 - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.22.2"; sha256="172cgbakc69a7pv4839hywmki606p61qgp9rpxzc9agqcw3xk2aw"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; 312 - EpiDISH = derive2 { name="EpiDISH"; version="2.8.0"; sha256="1dlw4pm88w3mdp5ws34qcxy11563znjcj3dk46z1iw1n4mswx3d9"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; 313 - EpiTxDb = derive2 { name="EpiTxDb"; version="1.4.0"; sha256="0nhlfc5spf55kx5in3b9hndzf8vwp455sxdbyqwvs3zqb4x8isll"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; 314 - EventPointer = derive2 { name="EventPointer"; version="3.0.0"; sha256="16hs4mlkb76kwnwrxpjlc2bgizzmbv9q0bc194qyr2j9idb3mpxp"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; 315 - ExCluster = derive2 { name="ExCluster"; version="1.10.0"; sha256="1dgjmqwpma42iy5f25pz9glr2nkm7y285hixnx2mw1xyn28yfjf9"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; 316 - ExiMiR = derive2 { name="ExiMiR"; version="2.34.0"; sha256="0p95iawzmds5c3j6pxfl7q90nyzy136s1v522sxvwsqg7pwjkrgn"; depends=[affy affyio Biobase limma preprocessCore]; }; 317 - ExperimentHub = derive2 { name="ExperimentHub"; version="2.0.0"; sha256="1mzmw3100lf33yhz27nbxncrjk5bprlackrjcwf8xdhcaidg40p4"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; 318 - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.18.0"; sha256="019ni1d2qhadf2xnyz6g79qll6ir7zcizjw0cb56czg9c0cj2nsc"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; 319 - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.2.0"; sha256="0xmh36xhk9arwf9c9w8jvg7ixxxcfv2bc0japyvydsvfyz53k5ss"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; 320 - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.4.0"; sha256="0frbm8w0ghzs4228k6y2c4h5m93zprl7wbp21pp62fyy5r3w584y"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; 321 - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.20.0"; sha256="1aiciicrf159bkiml8xb3w06f0g2ki94j75gl20680p1bm53ymb3"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; 322 - FCBF = derive2 { name="FCBF"; version="2.0.0"; sha256="0zzh21axis90g2vgvm71vb7p2yzks9ijapafyz19j124izwyinsi"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; 323 - FEAST = derive2 { name="FEAST"; version="1.0.0"; sha256="1md0kd65v0nb9qa3s886jycbhqg0m4wx7n9nkz2270ww5lhgpvca"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; 324 - FELLA = derive2 { name="FELLA"; version="1.12.0"; sha256="0iii0fnralm5a4qarnimc2phynpbwyp7d1zr8jg8j7pr1ylwg3gd"; depends=[igraph KEGGREST Matrix plyr]; }; 325 - FGNet = derive2 { name="FGNet"; version="3.26.0"; sha256="1v2rbiypv3ljv41x55gvyx9rrld13lcn8i6fhjp4vd1vvychg2g3"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; 326 - FISHalyseR = derive2 { name="FISHalyseR"; version="1.26.0"; sha256="19q7hbzl1bg1kb1jy1pihjgz36mi8ccfinhxs1cd8hksm5wg6jr4"; depends=[abind EBImage]; }; 327 - FRASER = derive2 { name="FRASER"; version="1.4.0"; sha256="03fbargi2q8y1d030laplk8wa3rmld52w2da96d65rg07iidh1aj"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; 328 - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.28.0"; sha256="0dfdbgmp5avw5hw4fwilim47qg8jb4d3r2rx6qmvzi42bcqighmd"; depends=[fda MASS]; }; 329 - FScanR = derive2 { name="FScanR"; version="1.2.0"; sha256="0gxfck1fvnmfzslz4vpfsqcnygjm2s817x1sisaxgyd55v6c5jcq"; depends=[]; }; 330 - FamAgg = derive2 { name="FamAgg"; version="1.20.0"; sha256="0z2nsjvzi80w5dbxjyp51j7cl3ff7ipak02m9p3xqrrnfjba34wp"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; 331 - FastqCleaner = derive2 { name="FastqCleaner"; version="1.10.0"; sha256="06dcnq56fc48sl968fxywsz2d4lipbwkl21wzca2sz52pdfhsh4p"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; 332 - FilterFFPE = derive2 { name="FilterFFPE"; version="1.2.0"; sha256="1rzl3sw2gsgjdn9is566g5pjlj8imk992angb7m243y5vgqsx9gd"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; 333 - FindMyFriends = derive2 { name="FindMyFriends"; version="1.22.0"; sha256="124sgww90ab77d3l1spsjlm6483l22qq98v9n8rar30z3a6g1iph"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; 334 - FitHiC = derive2 { name="FitHiC"; version="1.18.0"; sha256="1p8a6lis5yswaj647bjw89harlarnsxmvjzz63fn1l6gxrwhh8bx"; depends=[data_table fdrtool Rcpp]; }; 335 - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; }; 336 - FlowSOM = derive2 { name="FlowSOM"; version="2.0.0"; sha256="18h7p7g3w9imyd1c93jllgp4kd74z96cs85wcqfhmd26nx18hl82"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; 337 - FoldGO = derive2 { name="FoldGO"; version="1.10.0"; sha256="0j64767cwipwcsgkr5yjhgfdi0fjahvmbrnfl2drn0cxgzrjpb0k"; depends=[ggplot2 tidyr topGO]; }; 338 - FunChIP = derive2 { name="FunChIP"; version="1.18.0"; sha256="0rfqh1217jwmb7shyhil58by4qsfz3wlaa386zbxs0bf82xbkjcg"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; 339 - GA4GHclient = derive2 { name="GA4GHclient"; version="1.16.0"; sha256="00h6j3bl1m9zd9zqc6cr825y3c0xqcbp1cj9n8sszgbaxjrv353l"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; 340 - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.14.0"; sha256="1b0zf8gvnfkgkjnw0wj0ya4dw89kw5r3ajqp569ak7431qr71ir4"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; 341 - GAPGOM = derive2 { name="GAPGOM"; version="1.8.0"; sha256="108x2rmbxp9qxmf3w4rji1n7f4lqda10mk09i9mqffdqy3b3p67h"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; 342 - GARS = derive2 { name="GARS"; version="1.12.0"; sha256="0r6yvnld94669mw0vbnlzpf6ljxbjixxg51ksvisb8p70gl517a6"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; 343 - GAprediction = derive2 { name="GAprediction"; version="1.18.0"; sha256="0hnirag3dvf8h9hcirmmpfzwy8xxmn9xk8413z1xcjw3gd8k3bi3"; depends=[glmnet Matrix]; }; 344 - GCSConnection = derive2 { name="GCSConnection"; version="1.4.0"; sha256="19yvq8cngycx08i7s90iqjyc0aww24x0sad491w5gma9xbi9fkig"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; 345 - GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.2.0"; sha256="0nbarxyvk872rbljl212w453yh7f8wjy00kp6idlzqk2x608xhln"; depends=[]; }; 346 - GCSscore = derive2 { name="GCSscore"; version="1.6.0"; sha256="13wr36hjhrc4i28mbq51j13zbb6ax7r5hgqfjin79h2r805qfvb0"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; 347 - GDCRNATools = derive2 { name="GDCRNATools"; version="1.13.1"; sha256="1wvbdmddnq0w9z7ix4yna4sjzv547hiw2pihgf5k62gqnhdr60v9"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; 348 - GDSArray = derive2 { name="GDSArray"; version="1.12.0"; sha256="1jvdlph4jd3gjxp6vr5klvcfahnvfb9kl1jd60m8rnx9395p5h5j"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; 349 - GEM = derive2 { name="GEM"; version="1.18.0"; sha256="1yw7h8frjz6dfv9xp9vxa153gfl3kqvcznjabxr9qjgaknfj50zk"; depends=[ggplot2]; }; 350 - GENESIS = derive2 { name="GENESIS"; version="2.22.2"; sha256="1gbac3pbf9lh2c4316z4mzgv5rkmar7axh799gkr79g55rlcpysg"; depends=[Biobase BiocGenerics data_table foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; 351 - GENIE3 = derive2 { name="GENIE3"; version="1.14.0"; sha256="1v54dzcz654wfm3npbp8gb55v49im0fm547cz3hvsidq4zhi3l1b"; depends=[dplyr reshape2]; }; 352 - GEOfastq = derive2 { name="GEOfastq"; version="1.0.0"; sha256="0kvvx728y8cl6vsc8jljgbz2ssmp9qialb3bwvkmq6m5jp3jzik9"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; 353 - GEOmetadb = derive2 { name="GEOmetadb"; version="1.54.0"; sha256="0jayfnlv5x8s9nkbs6mkwcmgfff11jk8sis16zz7pqfq6xpwdicg"; depends=[GEOquery RSQLite]; }; 354 - GEOquery = derive2 { name="GEOquery"; version="2.60.0"; sha256="0jhkdbcd03d5n8vn3xkad6f21xjkawyxc9rdwcj8vwc8alx730am"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; 355 - GEOsubmission = derive2 { name="GEOsubmission"; version="1.44.0"; sha256="1d3rv8gwgd4zp7k3x5k6fbsjc1q09h4lni81nmid9p180qyi56xg"; depends=[affy Biobase]; }; 356 - GEWIST = derive2 { name="GEWIST"; version="1.36.0"; sha256="1hplhdz19vz0y5qq5ba435r4sd99m1krpfyrawalavary2pnl1c3"; depends=[car]; }; 357 - GGPA = derive2 { name="GGPA"; version="1.4.0"; sha256="1m2k2d2csx0p8i3ag02m7mh7yfvlxzqqnxcp4739rbhxyd31li58"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; 358 - GIGSEA = derive2 { name="GIGSEA"; version="1.10.0"; sha256="099gmqn5j6sbcj6zzfnl096lri2vy0fkbs69xbx1rf0392mkh91q"; depends=[locfdr MASS Matrix]; }; 359 - GISPA = derive2 { name="GISPA"; version="1.16.0"; sha256="11sajj0kmc1pj0r6nsy79s79zmlws1cdjfq0p8d62lwaqi278l13"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; 360 - GLAD = derive2 { name="GLAD"; version="2.56.0"; sha256="0hfpfr9f6siq36wz5mzl6qnqq8cfy628vbl9k7kl18m9zq8v9vhx"; depends=[aws]; }; 361 - GMRP = derive2 { name="GMRP"; version="1.20.0"; sha256="0cqpsczmwc2ggz70j8d1n8kn0m8n1in06pj0lgs4dbnm3hb8xhkr"; depends=[diagram GenomicRanges plotrix]; }; 362 - GNET2 = derive2 { name="GNET2"; version="1.8.0"; sha256="1icv3665iki4ad2j1ab9n3pnw2r6c0v66xj4b8cdb8xliw8g93km"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; 363 - GOSemSim = derive2 { name="GOSemSim"; version="2.18.1"; sha256="00dbgkiv9x7g2i0anzcxpycwqqqry0y7jl3ad93lhvi31qnqq1sm"; depends=[AnnotationDbi GO_db Rcpp]; }; 364 - GOSim = derive2 { name="GOSim"; version="1.30.0"; sha256="1qdkwnclga8xzbcc5qz2vma7zicfd9wgadjjprxfj7ak5s4dczsz"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; 365 - GOTHiC = derive2 { name="GOTHiC"; version="1.28.0"; sha256="1jl90842wsp0064rkhmgr40qhsq0kpj9nvdwc7jpddbg0z2zfrkj"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; 366 - GOexpress = derive2 { name="GOexpress"; version="1.26.0"; sha256="062d69g9yn3si6fg2y0j92zrxz0rz15lwvjwfyqgnxbygqm9vdry"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; 367 - GOfuncR = derive2 { name="GOfuncR"; version="1.12.0"; sha256="0lp2gmjlsk1yqxim5pi26i27iijw11lrcxmji7ynlag359yfnynd"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; 368 - GOpro = derive2 { name="GOpro"; version="1.18.0"; sha256="1bj22bf2lkr5wvn3b3m6mncy12l4csfh918drf6sh4wn3flzxpqj"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; 369 - GOstats = derive2 { name="GOstats"; version="2.58.0"; sha256="0jjswy6qmfgr2f6vk3y9pdvs9x91gn31h55qllgh0qb2cb26g9wa"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; 370 - GOsummaries = derive2 { name="GOsummaries"; version="2.28.0"; sha256="02y28jn7iv74njwk6vwfdax4h9ccy8ia630yh16rmid62icbglvd"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; 371 - GPA = derive2 { name="GPA"; version="1.4.0"; sha256="0ry9l3k78dmmkivxfdvbv29k8w96j72w1wy4rxq6f0lw14qmqmfx"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; 372 - GRENITS = derive2 { name="GRENITS"; version="1.44.0"; sha256="0d60nbnbhp4qx4rnxnlb2iinaysmfw271f5zn6zn9lw5wf2s40di"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; 373 - GRmetrics = derive2 { name="GRmetrics"; version="1.18.0"; sha256="0nlfafhgjxm7nii0p84hsa8d3lc1jpammgyjsbs3rmbd4y7f0l64"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; 374 - GRridge = derive2 { name="GRridge"; version="1.16.0"; sha256="06ki206fjdppvd7426zpdck4gv9xjwfy8f74m81pfffg52kjr5gs"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; 375 - GSALightning = derive2 { name="GSALightning"; version="1.20.0"; sha256="0habixm6g226pf0y1y4f3djcrv8007xr291wjwvjxyv4blhdc1cm"; depends=[data_table Matrix]; }; 376 - GSAR = derive2 { name="GSAR"; version="1.26.0"; sha256="14mvcv3mid3bjfjfh13ib60vvhkgifbhb8cylr9g1v131ljlys0y"; depends=[igraph]; }; 377 - GSCA = derive2 { name="GSCA"; version="2.22.0"; sha256="15f6y4yh99qkc88pr8p8id3gmgcqagaag09w1n9hywn9x0a9h5gh"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; 378 - GSEABase = derive2 { name="GSEABase"; version="1.54.0"; sha256="0946kkykms79mqnx262q20xzrrhv7cv723xh378335ff41qyf63n"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; 379 - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.12.1"; sha256="06iqz9h36agyp8sngvxya8xjv6bd6g8dgcn5zlj4gcaf66sb68s1"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; 380 - GSEAlm = derive2 { name="GSEAlm"; version="1.52.0"; sha256="1jhdrk2p2mpfih5j3gzp1lncykdp6bjx1v3sspff7ahhlri29mxp"; depends=[Biobase]; }; 381 - GSEAmining = derive2 { name="GSEAmining"; version="1.2.0"; sha256="14igvyym6j9biyk43af32b3x933hr4bzg4bc5w4hrkdypyzhbqqs"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; 382 - GSRI = derive2 { name="GSRI"; version="2.40.0"; sha256="0acqf4x73l3i0vdgjkjra42h1sss1mjwg697iy4ndqgk04fcan81"; depends=[Biobase fdrtool genefilter GSEABase les]; }; 383 - GSReg = derive2 { name="GSReg"; version="1.26.0"; sha256="1jlc2hp27rsy8d2z4pdcif0xd71gbljd2xzscmkzrw2s5bbnip9l"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; 384 - GSVA = derive2 { name="GSVA"; version="1.40.1"; sha256="0qf01vcj6nh1xhg1g29z73dnhhybl10bpfr3jiqk55na2q2i599h"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; 385 - GSgalgoR = derive2 { name="GSgalgoR"; version="1.2.1"; sha256="1z1lwx53clx1pqpvdzlbk837pyvsc0p3r0iha404nlrmj27r4vmc"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; 386 - GUIDEseq = derive2 { name="GUIDEseq"; version="1.22.0"; sha256="1qjfsghrvhy4s59lhwwjkqiy9q1gb1bkrnd0bh2pz5ndfcmqkp49"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; 387 - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.1.0"; sha256="1xsphhldr0b9hsqvxpsm2wja95im458rjzwljajx1ciwp94qagnm"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; 388 - GWASTools = derive2 { name="GWASTools"; version="1.38.0"; sha256="0as6rhl2g661kyf8qryjc1dvxi8vx9d70qfxpw63573vj05hfngp"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; 389 - GWENA = derive2 { name="GWENA"; version="1.2.0"; sha256="1jslfkcpx7gbw2vnf9dp7mmj2jlq477ni77x944jm3z2dnzvps7r"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; 390 - GateFinder = derive2 { name="GateFinder"; version="1.12.0"; sha256="1xh9g4v7hrp6d6n1zp7qplr04hc7i7ym4jjd4kx4aag4vpil9ikf"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; 391 - GenVisR = derive2 { name="GenVisR"; version="1.24.0"; sha256="0pp64hd6fdpgglpv007m2jca57rfphn6qgfqa07g7055isa2yy8g"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; 392 - GeneAccord = derive2 { name="GeneAccord"; version="1.10.0"; sha256="1q0wpnp0bc9igvncm7vyg79l9ij1sf14k6kixnwankg963z2b52q"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; 393 - GeneBreak = derive2 { name="GeneBreak"; version="1.22.0"; sha256="0kvpn87rlcwgqp6hdjiy4226rprlxzixax0jv3km7a4sfvf53l4y"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; 394 - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.38.0"; sha256="1h5n64qv2psqg0fv00j8nr94hfm9sjjdlg78zbx5l41hx5jmqnj4"; depends=[Biobase]; }; 395 - GeneGA = derive2 { name="GeneGA"; version="1.42.0"; sha256="1j1lb69jy67abk1v2mizsrxq2sbvmm137filb91s19a00nafn8cc"; depends=[hash seqinr]; }; 396 - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.18.0"; sha256="1jfkbk1nlca6n3d2k5m0fwls4si1ic9rxj06ar019z9vyvhwj5z0"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; 397 - GeneMeta = derive2 { name="GeneMeta"; version="1.64.0"; sha256="069w20ajyiq0q6qmb4rrs7vmzwlaq3wdd04nn31s700jdfcw6g66"; depends=[Biobase genefilter]; }; 398 - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.34.0"; sha256="0q0742yk95xlp0bm18ng0h2q62wa7bxp7hc2nmqiyi2azny4npyy"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; 399 - GeneOverlap = derive2 { name="GeneOverlap"; version="1.28.0"; sha256="1kfw3h68rvbafhklds6sfmviwv91nms8wk0ywzkjg5h3mmgxbsv9"; depends=[gplots RColorBrewer]; }; 400 - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.48.0"; sha256="0hf9nvjqx3107h92yfh9ran7k93ljq1qzkhq8zphdsngky17nnfb"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; 401 - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.36.0"; sha256="1zkz7384sl1yldpm23j8r6k7jpv6iaqk8saii7alhfx08qzj9j5g"; depends=[Biobase limma MASS]; }; 402 - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.12.0"; sha256="019ydjs1s1icgggrar0hqykkivvdm63ysjvf4g8mr8pdl69gfidy"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; 403 - GeneTonic = derive2 { name="GeneTonic"; version="1.4.1"; sha256="0604i8wl3xcaj53mj70m46qnpc32kkb1sgxx5c6vq9np12mmycmj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinycssloaders shinyWidgets SummarizedExperiment tidyr viridis visNetwork]; }; 404 - GeneticsPed = derive2 { name="GeneticsPed"; version="1.54.0"; sha256="0225idv7dqk2jhcd23bad2s474szib83wfa6czw4g60i0jrm0vwp"; depends=[gdata genetics MASS]; }; 405 - GenoGAM = derive2 { name="GenoGAM"; version="2.10.0"; sha256="0pf3mmf62na7g065rbwaq5lkcadzkdr862wl80gi5g17fpwc0vxx"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; 406 - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.28.4"; sha256="0fjpgvpvyvl8cqgh2annib6h0c5li3aqz1ajfh5z5k5d0avdm4w0"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; 407 - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.28.0"; sha256="00rq110jkh89nxgk05zh8kssxk8mb4dq0wjg3n7ivfmmm9wdwhp2"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; 408 - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.16.0"; sha256="1m7lvvki2azp8c7faybkx0rnpwwmvqkmbjbsqpmriz3484cxgs97"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; 409 - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.0.0"; sha256="0fz124inqjlqm8wrjm82183mdw8bxvlg3mcpn646bz1q0m7bs9zx"; depends=[Biostrings data_table GenomicRanges ggplot2 IRanges reshape2]; }; 410 - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.44.2"; sha256="091p8xnf2xkqhind81vyv1rmy2fz2b3qalcbrsw4qnp24vgdv2am"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; 411 - GenomicFiles = derive2 { name="GenomicFiles"; version="1.28.0"; sha256="1plh14m7w6calw5yxcxp7g4bg8q00ax85m517wap78bni975k13y"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 412 - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.26.0"; sha256="0zjl7rp5fk14kqsx0bkbpq6hqahbkiyvwa9aggp4kfb8hnmz9qal"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; 413 - GenomicOZone = derive2 { name="GenomicOZone"; version="1.6.0"; sha256="09cmgxszlabjs94wil46b4gp5bbfiba4b3a2j7x83hyl0d4rz4dc"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; 414 - GenomicRanges = derive2 { name="GenomicRanges"; version="1.44.0"; sha256="1qxc6dcwdlkan3hg0j9yfhz7gyi9qg671yj6zizsk6mzl7qqva0x"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; 415 - GenomicScores = derive2 { name="GenomicScores"; version="2.4.0"; sha256="1b8982fj0r7igj749wljsdfn3c985w8n3d5gbhr5rw73llfb8x6w"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; 416 - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.0.1"; sha256="1lwr8jjxkm5hix1ky31024vjx4b8j46kq2cn3khsb8ccraac8ngp"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; 417 - GenomicTuples = derive2 { name="GenomicTuples"; version="1.26.0"; sha256="1ngvskrcxhcpj2fnjxnjr2v37fr9ldj7jaflwql76y0fwnr8ak9g"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; 418 - GeomxTools = derive2 { name="GeomxTools"; version="1.0.0"; sha256="1y0n9yswfw219q2vc11mn6zj1gs2x0inr9biwda8w4dqjmakyxs2"; depends=[Biobase BiocGenerics EnvStats NanoStringNCTools readxl reshape2 rjson S4Vectors]; }; 419 - GladiaTOX = derive2 { name="GladiaTOX"; version="1.8.0"; sha256="0aya7xj45axnlzxxhjn0p209q8nzly87pvhawb2lw7iqh8faszyv"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; 420 - Glimma = derive2 { name="Glimma"; version="2.2.0"; sha256="0dsk8qmwimzmd1x4k4jwg9q11jm1ahn8cw0gzd6s2gmigfls4hsa"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; 421 - GlobalAncova = derive2 { name="GlobalAncova"; version="4.10.0"; sha256="1g6yafxlky8x6piba767j3pk8zqgf1z5svzdiskng3a56rzil3rj"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; 422 - GmicR = derive2 { name="GmicR"; version="1.6.0"; sha256="02nwk4drjwnbfzznzxxqbb0ss91skx3dbppl3r7br67yr6k5jf5y"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; 423 - GraphAT = derive2 { name="GraphAT"; version="1.64.0"; sha256="08yc9fr9wkhzcn99fqjijy98xrk2d19z7v221331fz7vik06086k"; depends=[graph MCMCpack]; }; 424 - GraphAlignment = derive2 { name="GraphAlignment"; version="1.56.0"; sha256="0ba3vk5izkxqwigidwhfnsk1xpg5pcsa9pla51yjzknicn2sbf5c"; depends=[]; }; 425 - GraphPAC = derive2 { name="GraphPAC"; version="1.34.0"; sha256="0y2cp552l648dz0gniw5zjdw4i2nr526d9s0rdahrdkls51v6g1m"; depends=[igraph iPAC RMallow TSP]; }; 426 - GreyListChIP = derive2 { name="GreyListChIP"; version="1.24.0"; sha256="1g9ja8p90czx83ar0l9ran7m6aggvszdbqm714fq7z4rxq9b4hs3"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; 427 - Guitar = derive2 { name="Guitar"; version="2.8.0"; sha256="1q4m6c5181dw12lvdp324jlk78c9jgcsg6b9hk87zjadp6j0gfr6"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; 428 - Gviz = derive2 { name="Gviz"; version="1.36.2"; sha256="0lp0k8jd4dfsfn10706124graaqnzcyv1siblvm8dn2ykw2rc6vl"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; 429 - HDF5Array = derive2 { name="HDF5Array"; version="1.20.0"; sha256="1718hplz5qlbwxwb87509bl7lir9kilvn1s7p2haz551pg48zvrc"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; 430 - HDTD = derive2 { name="HDTD"; version="1.26.0"; sha256="1kyh0r3y46asf8aad9dc190ggmi0iv018x2r7nr35qsm0b95h60z"; depends=[Rcpp RcppArmadillo]; }; 431 - HELP = derive2 { name="HELP"; version="1.50.0"; sha256="1clk8qg1wj9drji2byqc2dbh4xskf3mz86bibq8lkncjanivzvpk"; depends=[Biobase]; }; 432 - HEM = derive2 { name="HEM"; version="1.64.0"; sha256="12i3m68knr3jrry0m808msgijvxn3kkrmjwrddcbx331d16lmgq5"; depends=[Biobase]; }; 433 - HGC = derive2 { name="HGC"; version="1.0.3"; sha256="1dpkxc9pbjawwcnrgmbfxf7la5jd69aba5rf1xif8ka1sgm6h1fy"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; 434 - HIBAG = derive2 { name="HIBAG"; version="1.28.0"; sha256="0bfpvz13zzhl58c5cs1c28vsqy491l5ssgvpdpgj954l477115rk"; depends=[RcppParallel]; }; 435 - HIPPO = derive2 { name="HIPPO"; version="1.4.0"; sha256="1q83a3iq37h1nxa1r5ng7d1jaxvbcmwq1pl1yxg3bv8cjcv9l0di"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; 436 - HIREewas = derive2 { name="HIREewas"; version="1.10.0"; sha256="0bqwxghmi051ijmg1w97955bk8hlgshg39amdrgpsaalswvp8bi5"; depends=[gplots quadprog]; }; 437 - HMMcopy = derive2 { name="HMMcopy"; version="1.34.0"; sha256="1pjlcv93gcmg378020aia6j36h9m9a2iw7sv8hxf6sl22qzccxq2"; depends=[data_table]; }; 438 - HPAStainR = derive2 { name="HPAStainR"; version="1.2.1"; sha256="1bmk6xpa7j4sk02zrhvhyx7h5jifzgjpq8jfydaz45dkrnxpcizv"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; 439 - HPAanalyze = derive2 { name="HPAanalyze"; version="1.10.0"; sha256="14sv35caghdgg48s2n8fn63lpnpyb76aqgkcq201n89c9k1kscm2"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; 440 - HTSFilter = derive2 { name="HTSFilter"; version="1.32.0"; sha256="1vvxiifqh28kv7anbi97mbivzj4f0f8nw79si09qrw4v1vwadv62"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; 441 - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.22.0"; sha256="1f1lkd6pddfvy88mvkaym1szjixrlcyah7pwjaclh149n53cyl5c"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; 442 - HTqPCR = derive2 { name="HTqPCR"; version="1.46.0"; sha256="1y3ik5a9w66jby6682jfm8mn2883s8yfv4xw8a8v1f6q2d1j938l"; depends=[affy Biobase gplots limma RColorBrewer]; }; 443 - Harman = derive2 { name="Harman"; version="1.20.0"; sha256="08kjvi0lc9j5fcd0wq144kn2chlgl4fgfvrzhjz3k032qsssnkck"; depends=[Rcpp]; }; 444 - Harshlight = derive2 { name="Harshlight"; version="1.64.0"; sha256="08qjfpxb01qkfqvfybndnsqpz7lad31p0sfb6bawlymd6w7n7iz9"; depends=[affy altcdfenvs Biobase]; }; 445 - Heatplus = derive2 { name="Heatplus"; version="3.0.0"; sha256="0xwg3sxmihg3p6v3nxgrqy0nrqxi6razg3b3rjh2gcb2vv8gcqng"; depends=[RColorBrewer]; }; 446 - HelloRanges = derive2 { name="HelloRanges"; version="1.18.0"; sha256="018mc1l0qrsn1zhlffcj4nviycs9armqqbllw5aqdqc27l8qqqw0"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 447 - Herper = derive2 { name="Herper"; version="1.2.0"; sha256="0s8v80wpz8dvj7nrnks4dmajrz9i52vszcscv57ljjwyr0didd4n"; depends=[reticulate rjson withr]; }; 448 - HiCBricks = derive2 { name="HiCBricks"; version="1.10.0"; sha256="0ywqdrnklj6b7vs4r5zw1hw68ss9bhdnqn5y68l4pjzx43a4v963"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; 449 - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.0.0"; sha256="1abkg1gwl6qq5m3hmvjca1967d4b6yfxzypn7afkjkpmghjyxhcl"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; 450 - HiCcompare = derive2 { name="HiCcompare"; version="1.14.0"; sha256="0c7chw35k3n4rns00zlh6ijlir0ydcn04hxhvigdd1v1d7j7rxwp"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; 451 - HiLDA = derive2 { name="HiLDA"; version="1.6.0"; sha256="0kdnnr3dk0aspn3yzl509vh1jcg03lf58i8n1cdlxgzn6hsg23z4"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; 452 - HiTC = derive2 { name="HiTC"; version="1.36.0"; sha256="0s3kfqs3zlmq61hxdmxpmi9gfs9w3byckw7xzp1hrhdbsl46yvgq"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; 453 - HilbertCurve = derive2 { name="HilbertCurve"; version="1.22.0"; sha256="05brlfvyb47kjk9vah9a7p3348v0m7mnbcx5fjh3jp47mci46r5g"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; 454 - HilbertVis = derive2 { name="HilbertVis"; version="1.50.0"; sha256="1fiycg4zkkgb5jynxv6jglc9x3skr9s4xf9aisywgkv2rv4hhk13"; depends=[lattice]; }; 455 - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.50.0"; sha256="1685p65kf827ynbcxfb6dsp5bn7xjgwvrcp8q958jir84ma1glzf"; depends=[HilbertVis]; }; 456 - HubPub = derive2 { name="HubPub"; version="1.0.0"; sha256="00hrhhdahp5dccxad1i7q1wgn4fbdrw01jpa2vdx13f2dqzhwvls"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; 457 - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.8.3"; sha256="1bbdqiw8bmnac9r1jk1jamj4ilakn1rnqy9n77p4565yaa9ij9dp"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; 458 - HybridMTest = derive2 { name="HybridMTest"; version="1.36.0"; sha256="1xfri7da9wp38292b29l9rw6rabafv119baj7a4q238vfp6jjp9h"; depends=[Biobase fdrtool MASS survival]; }; 459 - IHW = derive2 { name="IHW"; version="1.20.0"; sha256="0b393a8ayzbnrgkk562w1dj7avacpb3wc7yq7awiki24wi5g2lfw"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; 460 - ILoReg = derive2 { name="ILoReg"; version="1.2.0"; sha256="1fxfv7p3bjaam49pria2p9ggq0qnmzx2kjlsp2z53anvnp8dw9zb"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; 461 - IMAS = derive2 { name="IMAS"; version="1.16.0"; sha256="1mlmafjav922v0my4igk125i8vi7crjgxy6495m2fqyzx549lq30"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; 462 - IMMAN = derive2 { name="IMMAN"; version="1.12.0"; sha256="1p71cjdvhwik28xz58zyk41690l5szr65hpb64301r0zm7kj8fad"; depends=[Biostrings igraph seqinr STRINGdb]; }; 463 - IMPCdata = derive2 { name="IMPCdata"; version="1.28.0"; sha256="12ayi1dyxhhls3dm7arypv8l1ab7sh8bmpc2y0dw6fnmax6fyn4a"; depends=[rjson]; }; 464 - INDEED = derive2 { name="INDEED"; version="2.6.0"; sha256="12xymfyll6k3xc4whjxm7v3gb9kgy06pivid2h3rfhsccj9kx504"; depends=[devtools glasso igraph visNetwork]; }; 465 - INPower = derive2 { name="INPower"; version="1.28.0"; sha256="0mwslnp1h9700whalbq5r878kyx2cfwjpv23nhbac0sry4afvz6z"; depends=[mvtnorm]; }; 466 - INSPEcT = derive2 { name="INSPEcT"; version="1.22.0"; sha256="0jh5db9dv5pb6b50sg22x8q55m3h0h0nkmb9mivvvp22dhyrd82z"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 467 - IONiseR = derive2 { name="IONiseR"; version="2.16.0"; sha256="0fknlwdfd49v09zspg0337b0zzc8hqza3563yrw51viw3g35d6q3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; 468 - IPO = derive2 { name="IPO"; version="1.18.0"; sha256="1c3kf51n6p9331r85pm8al0x7ykwvbm9bcmknj2fpgb159dsdasd"; depends=[BiocParallel CAMERA rsm xcms]; }; 469 - IRISFGM = derive2 { name="IRISFGM"; version="1.0.0"; sha256="0mjj9a13b6n2pldicdk53hqm4rqrd4nm8r2iv6wm37y1kwp66sqr"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; 470 - IRanges = derive2 { name="IRanges"; version="2.26.0"; sha256="0dzj8wqbjzilh2dsaj3ylx958xqrv0c688ayfq2r1z7rs75qy7kx"; depends=[BiocGenerics S4Vectors]; }; 471 - ISAnalytics = derive2 { name="ISAnalytics"; version="1.2.1"; sha256="042m7iwqzg5hfbl5gmwiyhpjv6a6bfb0fxkidzpxsrghr7vdxar7"; depends=[BiocParallel data_table dplyr fs ggplot2 ggrepel htmltools lifecycle lubridate magrittr plotly psych purrr Rcapture reactable readr readxl rlang stringr tibble tidyr upsetjs zip]; }; 472 - ISoLDE = derive2 { name="ISoLDE"; version="1.20.0"; sha256="06r51d6f5vrzn9nfwssj3wca8sccr76jf8hwf8h3yc89pw2cvag8"; depends=[]; }; 473 - ITALICS = derive2 { name="ITALICS"; version="2.52.0"; sha256="0c4bli316kamlvwklj67ysp82xkiiilym7b6cbmk1x8vv9fgwslm"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; 474 - IVAS = derive2 { name="IVAS"; version="2.12.0"; sha256="0ya17p7lzffamhg7q4manqk64pnn32fcas7fsbpx9cch3vzhf29k"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; 475 - IWTomics = derive2 { name="IWTomics"; version="1.16.0"; sha256="146cm1lbfkgagys1mkir4dq4ymcsn0xyi44171g31by1vjnbjvq0"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; 476 - Icens = derive2 { name="Icens"; version="1.64.0"; sha256="1rzgwxx4w2bqsaz0xmkhi4w9zsxgms80xf59zg1xp1camyhaihlz"; depends=[survival]; }; 477 - IdeoViz = derive2 { name="IdeoViz"; version="1.28.0"; sha256="17sx0v5lq2zmg098ps4ksj1h0yla3vlh6s2w1ahqsq0nvm193scm"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; 478 - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.6.0"; sha256="0ix535avl0mi0fak7q989gba8wpai70skxri8xrc0rpsl5wwm8cl"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; 479 - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.20.0"; sha256="1wjayzcz71wrzrxjqn44da03lcaxic4gj8bzgic0247c6h7a4m8b"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; 480 - InPAS = derive2 { name="InPAS"; version="2.0.0"; sha256="1qx900vm0qagbn647xcjns613hngxzpy49wkd0w9h4c7aqz0yyw4"; depends=[AnnotationDbi Biobase BiocParallel Biostrings BSgenome cleanUpdTSeq DBI depmixS4 dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr plyranges preprocessCore purrr readr reshape2 RSQLite S4Vectors]; }; 481 - InTAD = derive2 { name="InTAD"; version="1.12.0"; sha256="1s53fs7cvczf5x4cy9ak7wmbg9jp6r3lb3a51dm4y94brx18n1wf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; 482 - Informeasure = derive2 { name="Informeasure"; version="1.2.0"; sha256="0igkvp2djr858b4i0qs9zlj4a425066pb5zb9mv4x05biky8jd1k"; depends=[entropy]; }; 483 - IntEREst = derive2 { name="IntEREst"; version="1.16.0"; sha256="1yslvjxz5sqh46k57lrv3226g74rhdy7xxhis4frr13i7i8h020a"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; 484 - InterCellar = derive2 { name="InterCellar"; version="1.0.0"; sha256="0kjadprm92s60nsky7bxbp0dfqrm9s169kab4cf8h60xcf9rm4gs"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; 485 - InterMineR = derive2 { name="InterMineR"; version="1.14.1"; sha256="1p7dvn2s2xq39zxxbmqma0i2ha0nj9bl65awp2h5b0yrqx12ia0v"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; 486 - InteractionSet = derive2 { name="InteractionSet"; version="1.20.0"; sha256="034xidjmn67n1471fnpdmz7gjm6p05cj8sp9nssc3gxdzn54a6xb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; 487 - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.0.0"; sha256="0i6n49vac0pzimx82hk4ssfc21hml68j5is3czl4m40sn541s4gv"; depends=[clisymbols ComplexHeatmap digest GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; 488 - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.14.1"; sha256="16f1q9gbb1zd71ygmwikh9ns9392x8mf1srf0zkfn0ikcr7i6vb6"; depends=[FGNet igraph knitr]; }; 489 - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.10.0"; sha256="05vqn4y2qrvgap8fl7cqc5qmg4aqc09bn0n6n527h1zsjkvam7w8"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; 490 - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.8.0"; sha256="1xqqfvbwnfg45ajkk55138px3plsdjgmzdd6rnj5lq7pbykxlf1m"; depends=[IsoCorrectoR readxl tcltk2]; }; 491 - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.28.0"; sha256="0vnlja5r982m38vayy4njgybpy6da17vvi959qvwlrfglkk29l77"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; 492 - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.14.1"; sha256="0zfwhaz5p0ivyjd06nm16vfwywnzani5plh8jyj3fp6h9qjsgzd4"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; 493 - KBoost = derive2 { name="KBoost"; version="1.0.0"; sha256="15x0n45v5qjb4qgp4hdw0cvwc49fwgpn4j41qhixn6c3dbyn0588"; depends=[]; }; 494 - KCsmart = derive2 { name="KCsmart"; version="2.50.0"; sha256="0fz7pn7z9yyvi9k5va4imjr2bk62jf6gvyymm0jcmw1dlca3g6i7"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; 495 - KEGGREST = derive2 { name="KEGGREST"; version="1.32.0"; sha256="15313d20v3ziyn52fhc6fbzcy1kxjkdx18124bxhdfd14f4aypcd"; depends=[Biostrings httr png]; }; 496 - KEGGgraph = derive2 { name="KEGGgraph"; version="1.52.0"; sha256="0zxdph5hzr3kzj2g1mjqpiviwa189a5sq4bw7wiry6r79fdnklqs"; depends=[graph RCurl Rgraphviz XML]; }; 497 - KEGGlincs = derive2 { name="KEGGlincs"; version="1.18.0"; sha256="1k1b1d0nzp3psk1qx5mcz6l8had1ymfdnm1xn0rmwzgny5mzcma0"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; 498 - KinSwingR = derive2 { name="KinSwingR"; version="1.10.0"; sha256="0zj16im3j2kvgi84mgpk0x8kqp8l831zkqcvjn27y73dvniiycby"; depends=[BiocParallel data_table sqldf]; }; 499 - KnowSeq = derive2 { name="KnowSeq"; version="1.6.3"; sha256="1wsbs97n27iwhxh0fjxsfqz25p6rn2rh6r4cibnmvm18vkm54hvp"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; 500 - LACE = derive2 { name="LACE"; version="1.4.0"; sha256="1v4nsm4bx6kmsx6ivwn18zki4h9yri4mpigaqpwi1flfbfgm9wa5"; depends=[data_tree igraph RColorBrewer Rfast SummarizedExperiment]; }; 501 - LBE = derive2 { name="LBE"; version="1.60.0"; sha256="0fd8qihzy7v7zzn1kky3ja7k3n4mav3myi2bkdrlw7nhrxsx1hys"; depends=[]; }; 502 - LEA = derive2 { name="LEA"; version="3.4.0"; sha256="10pbaq5lmc1w1jpplvxxmpqjmf6c0k9hxd8l8c209ldwsxnhjn6a"; depends=[]; }; 503 - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.18.1"; sha256="1vbai8gz3rdhfr7x28lc6xyiqh0zj95kdmbpsr2blgm0analnx46"; depends=[CAMERA xcms]; }; 504 - LOLA = derive2 { name="LOLA"; version="1.22.0"; sha256="0a7ywik5dxb12xivllwjr3mp9q0r8692qarv6inzbpigby5cgnyi"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; 505 - LPE = derive2 { name="LPE"; version="1.66.0"; sha256="1nakn89bdmrlbh97finab4b5myyq25j8vnysp7x325kw10arrfrw"; depends=[]; }; 506 - LPEadj = derive2 { name="LPEadj"; version="1.52.0"; sha256="1zn3fl0fs4nfbcyhrb8f3gfgidha36ryrlsblpm3bg36f21v59zs"; depends=[LPE]; }; 507 - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.2.0"; sha256="0h1hnbw0dvd4scya4x29nrpwjx9yzhbkvv9il5d4xmhpr22ccm08"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; 508 - LRcell = derive2 { name="LRcell"; version="1.0.0"; sha256="0aaqmdn0jlwdm240v3i0cjqj1xgh0r491162bdczxy843czrlq26"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; 509 - LedPred = derive2 { name="LedPred"; version="1.26.0"; sha256="0bqkjs53v75x8qn9h8cxrj4dpkng71p1mr4lzhaihx7fww035q0i"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; 510 - LineagePulse = derive2 { name="LineagePulse"; version="1.12.0"; sha256="0k0saiq2m5fzg9d9av6nphn6gpzl33m5idy3vskf2zdbhmkw31yc"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; 511 - LinkHD = derive2 { name="LinkHD"; version="1.6.0"; sha256="100q61dxpwy0qaifld4vmyz92x25fjfynn369qnjw189ba1kgvff"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; 512 - Linnorm = derive2 { name="Linnorm"; version="2.16.0"; sha256="035hrniycqadmkwg8rmzw8szv0amhy31390izy91rfrld31v2yy7"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; 513 - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.46.0"; sha256="1daaz18ab3qdfv8q9121jqiivvfljknrm3gmm7ky8pr5yph0irqj"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; 514 - LoomExperiment = derive2 { name="LoomExperiment"; version="1.10.1"; sha256="1wlc13z93xrj86gfh3c8pbx3jja08pqnwk6zafflr2vhfj1b3ckl"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; 515 - LowMACA = derive2 { name="LowMACA"; version="1.22.0"; sha256="19x29p290yxy8lcjdb951p5cnxwzmk4q5jfpdlpjshln7g806d88"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; 516 - LymphoSeq = derive2 { name="LymphoSeq"; version="1.20.0"; sha256="0s88rrhq5lpajllqz1swxlwc9srzyv0paz20xv400jdlwfz69vn4"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; 517 - M3C = derive2 { name="M3C"; version="1.14.0"; sha256="17gj4haa4ywc6bmppm342jzppl3inqa94235yspikij6c098vrmc"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; 518 - M3Drop = derive2 { name="M3Drop"; version="1.18.0"; sha256="04yq38xdpwl0v206ivqj6szyznwdpm39chnmhqrwbal9aa7861v4"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; 519 - MACPET = derive2 { name="MACPET"; version="1.12.0"; sha256="0rz5813fg2l1q4pp07qj108rfq7csnjq623cz62rpnb7v3813dx0"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; 520 - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.6.0"; sha256="0qrbxm3ny7a6l587cxk01lb8s6fni42as40zhhk8fyd2fm4cc8ii"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; 521 - MACSr = derive2 { name="MACSr"; version="1.0.0"; sha256="0a2ywmwi7xggh1gx94q8yvm74mqllmhyy07y9qkmhgnlb2v1438i"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; 522 - MADSEQ = derive2 { name="MADSEQ"; version="1.18.0"; sha256="1a5mhns830av73bp29yzzlg990alkz7rs43648cl0v2hh78300y1"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; 523 - MAGAR = derive2 { name="MAGAR"; version="1.0.1"; sha256="0aqnkmznfs6nl9iwn41hah606mlgwhz8xsc445y8ifc0xs3bllzw"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; 524 - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.12.0"; sha256="0fhbsb2z8nv1r9mhxsdgb1mp5x96p2zry0ikrmn4a8rrz0wwvm56"; depends=[Biobase clusterProfiler enrichplot ggplot2 ggrepel gridExtra reshape2]; }; 525 - MAIT = derive2 { name="MAIT"; version="1.26.0"; sha256="1krkcvppa5zbl5i7pj5lh0pi9c0n8fs64dsglvr0m5ym7knj7kr4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; 526 - MANOR = derive2 { name="MANOR"; version="1.64.0"; sha256="022j9fwqii2i524g97pqfj7n6zj2jm44ccd7937lyjzsylvm51hp"; depends=[GLAD]; }; 527 - MAST = derive2 { name="MAST"; version="1.18.0"; sha256="1gkpagam5rap36viyr3n4psa658x9vckrxap1h67jasiiyrcfz2d"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; 528 - MBASED = derive2 { name="MBASED"; version="1.26.0"; sha256="0mmlsd5sc8y6w1gg93ic2jixlvxzhnj2qb20sh1zv5b0lyfmif8z"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; 529 - MBAmethyl = derive2 { name="MBAmethyl"; version="1.26.0"; sha256="1lfxygbwvygpv99wrxgyc5dbz0ih4ggbvf5f5a9s5wnkpvf9jylf"; depends=[]; }; 530 - MBCB = derive2 { name="MBCB"; version="1.46.0"; sha256="19a06dwdmznj6qhyrplkcxdlc4983q54bay5bjvbxr43vik7b4df"; depends=[preprocessCore tcltk2]; }; 531 - MBQN = derive2 { name="MBQN"; version="2.4.0"; sha256="0nq41kk2rw1jh7rs89dr31bjqdd5z40mya4k1cwa7dah03s96q5q"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; 532 - MBttest = derive2 { name="MBttest"; version="1.20.0"; sha256="0cr3bcdlbd3khx96hk2561ifm7s3v6ari8wbg1c5scji460n4dyk"; depends=[gplots gtools]; }; 533 - MCbiclust = derive2 { name="MCbiclust"; version="1.16.0"; sha256="0dhxdd66x094nyspr86hwjlkpva41r5qacc5s7ipn9lyrlrq51f1"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; 534 - MDTS = derive2 { name="MDTS"; version="1.12.0"; sha256="04fazzkqq0vr0rjzzcd2sikfh9fmll8jh28030q3j7y8aibb9fj5"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; 535 - MEAL = derive2 { name="MEAL"; version="1.22.0"; sha256="0ydbxsbwlrhkzgx0fnrvy17qn3apzxp5wk1mm8833fg3gb3k3maw"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; 536 - MEAT = derive2 { name="MEAT"; version="1.4.0"; sha256="111ks2734xx3giay9svaksxymgc58g7rljvinds5n1r2ncsfaz5y"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; 537 - MEB = derive2 { name="MEB"; version="1.6.0"; sha256="166mxzv5y524k20ssv2xdwiyp06k483ry7mp8xq34rwqvnv6jgkw"; depends=[e1071 SummarizedExperiment]; }; 538 - MEDIPS = derive2 { name="MEDIPS"; version="1.44.0"; sha256="0l57a5hz0lr3snaqb73bprrd1jk2hpq6qjicg7yaypr7hv1csa1i"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; 539 - MEDME = derive2 { name="MEDME"; version="1.52.0"; sha256="19kw0dsarylvzmmmh6hrvwgzp2d5v2d3c096x1w77y03q2261gmm"; depends=[Biostrings drc MASS]; }; 540 - MEIGOR = derive2 { name="MEIGOR"; version="1.26.0"; sha256="1b657d7xfcx9rkf4ilpjvad8296x36cj5sixp7xh4iyy7i1y4r8s"; depends=[CNORode deSolve Rsolnp snowfall]; }; 541 - MGFM = derive2 { name="MGFM"; version="1.26.0"; sha256="08nb9cdxmcs4pfk3i0g5w6dn0flxvl2hdvvzr4578r4l79qcc3da"; depends=[annotate AnnotationDbi]; }; 542 - MGFR = derive2 { name="MGFR"; version="1.18.0"; sha256="1gk7rzm5r7adm8grslpnhg4hx2jj7m75280br5g6ikgzz76q23n5"; depends=[annotate biomaRt]; }; 543 - MIGSA = derive2 { name="MIGSA"; version="1.16.0"; sha256="0mhbjb7scrmnvaimk8b3jfdwda1vkh6zqhc1qyd6w86wji3pqqk0"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; 544 - MIMOSA = derive2 { name="MIMOSA"; version="1.30.0"; sha256="078myiqzrkv3f17mafqjd8znsmhv2mpsc5rdwf1yicj88shc2q3g"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; 545 - MIRA = derive2 { name="MIRA"; version="1.14.0"; sha256="0pymi0zcv16x7g4f0kj9cfa7fjcxpphlwvjq1sdy74p8lkmzcqfs"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; 546 - MLInterfaces = derive2 { name="MLInterfaces"; version="1.72.0"; sha256="0ipzv7wdvfqhdyjiak956qq201igsdxm6dr6rh3dj6cssgsrnrpb"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; 547 - MLP = derive2 { name="MLP"; version="1.40.0"; sha256="0nnvnlkngipsdgky489hdwyazg9iqp5xqv8m3zjgn55p07yw6j3l"; depends=[AnnotationDbi gplots]; }; 548 - MLSeq = derive2 { name="MLSeq"; version="2.10.0"; sha256="0yww4w66rjbk3gbj86wd07i2z6ic4vjcxy7cacrvbvwkjbdxkzb4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; 549 - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.6.0"; sha256="0dgsszfv3pgmbnns5pxaixkfni5k4c995247cfvkmz5gbwrlfh1g"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; 550 - MMDiff2 = derive2 { name="MMDiff2"; version="1.20.0"; sha256="1k7zgn9m7plfqqjsw6rlwcf28cysp3xg05krz8qii066plms291f"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; 551 - MMUPHin = derive2 { name="MMUPHin"; version="1.6.2"; sha256="1hagg3fyyr6wzy02rcpd5rmniah78q5ndh1w7l4pc4mrmbfs4srn"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; 552 - MODA = derive2 { name="MODA"; version="1.18.0"; sha256="02yzc9sg2yqbr05zxw2mqd2fizy0r0fh0g6wszljzcabbadwxbcn"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; 553 - MOFA2 = derive2 { name="MOFA2"; version="1.2.2"; sha256="1hx1bgcyjcs5kan13dg2i4a43m3p0981cqdxizrz1j43xf6h26ln"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; 554 - MOGAMUN = derive2 { name="MOGAMUN"; version="1.2.1"; sha256="1x0v7ha2a3ldqiwxyn9l9z2frbshpn04k5zy8rxhbk447b0hca5z"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; 555 - MOMA = derive2 { name="MOMA"; version="1.4.0"; sha256="0pig4kcr1bwwvg4shy20w8dnx9q3l9faz19qxn8d6hmd6ff91yhz"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; 556 - MOSim = derive2 { name="MOSim"; version="1.6.0"; sha256="0dy0z5fbhhh4vwn2dd5cdkdfc5vwjxl408lszvyhvlszacq5viq4"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; 557 - MPFE = derive2 { name="MPFE"; version="1.28.0"; sha256="17y8cahvrp9x29dd59ybhcxvdiw1n2gj08zv2yfycbksvarymlpp"; depends=[]; }; 558 - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.10.0"; sha256="16p9gc40m3c6m2vrzj1k3sjfxi67xg7j09ssrahlw3lak5pf7412"; depends=[BiocParallel progress SummarizedExperiment]; }; 559 - MQmetrics = derive2 { name="MQmetrics"; version="1.0.0"; sha256="0ndh271scf4kv8rkx6h0yjwkspxkr6rn5zh89dm45hhmp5dahm1a"; depends=[chron cowplot dplyr ggforce ggplot2 ggpubr ggridges gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; 560 - MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; 561 - MSGFgui = derive2 { name="MSGFgui"; version="1.26.0"; sha256="05gg4a7a3w7g0mhmcycn3w9p714w1d1jgfxs29ifk50c5ji95gxp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; 562 - MSGFplus = derive2 { name="MSGFplus"; version="1.26.0"; sha256="069vn4bjb4xlgn0msrj56gx5rmm5zh35y00045q1jjv4w6q58c5w"; depends=[mzID ProtGenerics]; }; 563 - MSPrep = derive2 { name="MSPrep"; version="1.2.0"; sha256="1d27gvrz8vs9wvcmq8ld4nyl6aklmxa955k8qah8c4xsb2swwqvi"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; 564 - MSnID = derive2 { name="MSnID"; version="1.26.0"; sha256="0r3vgigf4fk0xzfg8gcvad01jdh0fysh6x22m9qy77x6glyrxcj2"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; 565 - MSnbase = derive2 { name="MSnbase"; version="2.18.0"; sha256="1z7s17j6zgb70m0khyf9icqlnbnzlivca7vw7j0vxyw417ld9lkr"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; 566 - MSstats = derive2 { name="MSstats"; version="4.0.1"; sha256="1x5cxz4i65fv055ksj6jsiaj60px457hqkhp58rhvaf8cg9gvf8c"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; 567 - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.2.2"; sha256="1mwxlbv7jb61in0zsrsy09prhgv54nh5wkj3zcs89lgvc813jgpm"; depends=[checkmate data_table log4r stringi]; }; 568 - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.0.0"; sha256="09mlgcvj7a30c6rryr1zx7743gxpwcz7xyxcvfgd4ci492i3s670"; depends=[ggplot2 minpack_lm Rcpp]; }; 569 - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.2.4"; sha256="11byb6hiahsn33k2myav7g66fx9514idxpr7vzf6v49jiz53b9qc"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; 570 - MSstatsQC = derive2 { name="MSstatsQC"; version="2.10.0"; sha256="0z62xy689qbbwak6j1kqhagm0z8k9m7c8sdns59mc0xz1s6valh8"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; 571 - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.12.0"; sha256="0jr8x1fv648kky5w6438hdj9w151a7mbb4z28nds60k44bvk521v"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; 572 - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.6.0"; sha256="0cyddrm3wj28apik58wnm698gwbz5d8q5b7w4x1mp2qsp7af6c7y"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; 573 - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.0.1"; sha256="117p64fagkyykx8iiyiijdmkqpz9mk5r4r978g6g89677jj2nspj"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; 9 + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; 10 + ABSSeq = derive2 { name="ABSSeq"; version="1.48.0"; sha256="0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"; depends=[limma locfit]; }; 11 + ABarray = derive2 { name="ABarray"; version="1.62.0"; sha256="0yh7jmkwdg3kmm98ii0cxbla3s5bwy84fpg6xcpggsrriwzwfb5k"; depends=[Biobase multtest]; }; 12 + ACE = derive2 { name="ACE"; version="1.12.0"; sha256="1nkbxldn5ba4fzfh4skwjc37gm6apwp09vzwnj2jw3b7ivmr0yr6"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; 13 + ACME = derive2 { name="ACME"; version="2.50.0"; sha256="0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"; depends=[Biobase BiocGenerics]; }; 14 + ADAM = derive2 { name="ADAM"; version="1.10.0"; sha256="18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; 15 + ADAMgui = derive2 { name="ADAMgui"; version="1.10.0"; sha256="0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; 16 + ADImpute = derive2 { name="ADImpute"; version="1.4.0"; sha256="1bkq1hd8sqg9r28r70a9vd3gb2nsmg6dybf002d621p88cdfjib2"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; 17 + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.34.0"; sha256="0a01wds33i2h2whigznbrxq38irlxm20qpwix33x6vlxbjgrckal"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; 18 + AGDEX = derive2 { name="AGDEX"; version="1.42.0"; sha256="0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"; depends=[Biobase GSEABase]; }; 19 + AIMS = derive2 { name="AIMS"; version="1.26.0"; sha256="1jsvyddv4cy3a53agprqkpfv1a7p384d462675k73dh8paid90nq"; depends=[Biobase e1071]; }; 20 + ALDEx2 = derive2 { name="ALDEx2"; version="1.26.0"; sha256="1k57ifczqj47r8v2m08kmqr4vsrc5vsh7zs18vspvd6xd0qd03xf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; 21 + AMARETTO = derive2 { name="AMARETTO"; version="1.10.0"; sha256="1arjh3n5wcm3ss4czfqd2m8nipy264vixvv5kij8ifqsgsipsx0p"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; 22 + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.20.0"; sha256="1gsngb14qskgzbs4d45bh283lpiqpbrns04k1jzdhlg71344307x"; depends=[]; }; 23 + ANCOMBC = derive2 { name="ANCOMBC"; version="1.4.0"; sha256="113rgy2wdypzppcd1pvng9b433bhb6nmhp79k56sr92l26i6nn4h"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; 24 + ANF = derive2 { name="ANF"; version="1.16.0"; sha256="19irzhi7ph29vyq6d7jm8i5nf7bavxsn0nasl56l1h5xlzc9iak7"; depends=[Biobase igraph MASS RColorBrewer survival]; }; 25 + APAlyzer = derive2 { name="APAlyzer"; version="1.8.0"; sha256="027bz9r88k3cqvjap2x2prg9qbi57n21p85ffrf0cnd1ivap2zqw"; depends=[DESeq2 dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; 26 + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.34.0"; sha256="1ryqr3mpakjml0jhbk28k2z511sdl87wxdczxq1rwx98s0pc9mnh"; depends=[ARRmData]; }; 27 + ASAFE = derive2 { name="ASAFE"; version="1.20.0"; sha256="0g93zg8drg2sgkn6z1rri9aas4vyi3wn9yfq4pz92500s1zz1wxx"; depends=[]; }; 28 + ASEB = derive2 { name="ASEB"; version="1.38.0"; sha256="15jdibzp9z1qcspcybg4r0agjslbqqab96b5scfh3xk71blif1r6"; depends=[]; }; 29 + ASGSCA = derive2 { name="ASGSCA"; version="1.28.0"; sha256="03h604c5n4lz8dj2irmlfigk6lsip8f8x9app7xq21vjwcwqjhiz"; depends=[MASS Matrix]; }; 30 + ASICS = derive2 { name="ASICS"; version="2.10.0"; sha256="18g9kvzvf91kj2a7xj0i9h2gg1vh0gz5109d3ri8cpgid8bdp24x"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; 31 + ASSET = derive2 { name="ASSET"; version="2.12.0"; sha256="0zni27hl583bi2pzip2v2469cv5rdzkpnqnyx81j9a1gzgg2swyn"; depends=[MASS msm rmeta]; }; 32 + ASSIGN = derive2 { name="ASSIGN"; version="1.30.0"; sha256="0j8kvn5pq29wqjdcsq6smawdvxb7ccam3m5z223mkwww24m92qyw"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; 33 + ASpediaFI = derive2 { name="ASpediaFI"; version="1.8.0"; sha256="0q33ir3chlix9qvw9drjrwzckk5s1vkj7gfdsffrslxsyl0nizx7"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; 34 + ASpli = derive2 { name="ASpli"; version="2.4.0"; sha256="0548p8k3a379qqw7d80rbc7hm1g9bx4vmadxm0gmjph9akx56f3h"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; 35 + ATACseqQC = derive2 { name="ATACseqQC"; version="1.18.0"; sha256="0i1i3bfkp1xsjdl1nd56mlh66qz3aasd1hp09d4i31njz2f9znwn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; 36 + AUCell = derive2 { name="AUCell"; version="1.16.0"; sha256="1lclf8hkhrm6g5fp8yhvjxnwgf8p0j9ffxsmcybz4rjvmwkiz5dp"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; 37 + AWFisher = derive2 { name="AWFisher"; version="1.8.0"; sha256="1i9niknq2bnhwjdvl4f5hmdhg0p5vn9p6b6bb8fanfsijq0cn37p"; depends=[edgeR limma]; }; 38 + AffiXcan = derive2 { name="AffiXcan"; version="1.12.0"; sha256="06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; 39 + AffyCompatible = derive2 { name="AffyCompatible"; version="1.54.0"; sha256="1qlfh1gcwa6akd5dhdqh260yaw1j6dap6a15ghwf74rchi5218sg"; depends=[Biostrings RCurl XML]; }; 40 + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.40.0"; sha256="00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"; depends=[affy]; }; 41 + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.44.0"; sha256="05m9lr9qxyzp965lryrsbhjb2wadq47pwz9crwmd3ml9pfk25m6p"; depends=[affy affycoretools Biobase limma preprocessCore]; }; 42 + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; 43 + AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; 44 + AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; 45 + AnVIL = derive2 { name="AnVIL"; version="1.6.0"; sha256="1a4jjrwc8hmcaq35jzyf3k3pva1zisbsz1vdmv25qgjirf9m357h"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; 46 + AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; 47 + AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; 48 + Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; 49 + AneuFinder = derive2 { name="AneuFinder"; version="1.22.0"; sha256="0xn8952fkchhx7m8dam6gjy86j551xp1cs67510s1qrmfgzpkjp0"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; 50 + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.1"; sha256="1svh5zcb7ymz463z5641l2cvzniswxasjjix2plfhqs0yqf1j9qg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; 51 + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; 52 + AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; 53 + AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.0"; sha256="0ks8yzvvs2r66pb9687mkskf0n3wgvp7h92k83b0a1q32sca5wng"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; 54 + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.0"; sha256="19z7jsfmd4f154l6i270107pp5jqj4qqcl10ymfpx87w6i3jdy7w"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; 55 + ArrayExpress = derive2 { name="ArrayExpress"; version="1.54.0"; sha256="1rfvycrjlw0x1sqjrmiyf8i7yjiwjqf8x83i7pfg78yg9k5sh9vi"; depends=[Biobase limma oligo XML]; }; 56 + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.44.0"; sha256="1mjnddy05y06bn25xcjdx8kz538z3k4gvyqrb1lg4z8593xaw40i"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; 57 + AssessORF = derive2 { name="AssessORF"; version="1.12.0"; sha256="0rn2ijnpa8a6w2zv3cvm1s5bhcvzmb4xk18d96wjc60gxk51i5wy"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; 58 + Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; 59 + BAC = derive2 { name="BAC"; version="1.54.0"; sha256="1xplpx3r34l3h43a4zgv9s5z4sw61vlq828gqwc7f0i73a2jbck3"; depends=[]; }; 60 + BADER = derive2 { name="BADER"; version="1.32.0"; sha256="1ngi4nrw0gfz7k4x1c5harl6a9bxfv8m7f1smxs5awnwr0jnv9pa"; depends=[]; }; 61 + BAGS = derive2 { name="BAGS"; version="2.34.0"; sha256="0lkg4c4ay20bhas9lr6aifxhw0yhh999v6d1kbbplw4hhd1b93ha"; depends=[Biobase breastCancerVDX]; }; 62 + BANDITS = derive2 { name="BANDITS"; version="1.10.0"; sha256="0c6a6hkm381xdlzx7mndzqsnxrmrkd0h7nh04w5rmnbk0g6psfi5"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; 63 + BASiCS = derive2 { name="BASiCS"; version="2.6.0"; sha256="0nn4l94qnz0z19rav3agvwiq0726rmazpjpga4832p83lqg2ab1d"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; 64 + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.24.0"; sha256="1h4s5341jfmcvad83idlj1d1nhqapagx5jnvp9lv1p4df8gf38b4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; 65 + BCRANK = derive2 { name="BCRANK"; version="1.56.0"; sha256="01lzqs6zzag4s9aa409rd57qk0wfxmnrlryc28cy0yiv2bl8g7dz"; depends=[Biostrings]; }; 66 + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.12.0"; sha256="1nppwmqlhrl61rwh1n5b9nr5q5lc0ny8dj6pfdcqx5lkvaphzssb"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; 67 + BEARscc = derive2 { name="BEARscc"; version="1.14.0"; sha256="0n408rbpyjap0np2ih6svqkiq9g14rgbc0d52x3gv7x8xp5n7ckz"; depends=[data_table ggplot2 SingleCellExperiment]; }; 68 + BEAT = derive2 { name="BEAT"; version="1.32.0"; sha256="0ah1fzjdb67925lkr23fk7i016mhwqd6i5zw40bnnzr9w9wk7gb5"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; 69 + BEclear = derive2 { name="BEclear"; version="2.10.0"; sha256="1njb1lfd4wmsrfw06jc8z8vdk14nmcw9lwyvbxr7z1zg4h8v6c29"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; 70 + BGmix = derive2 { name="BGmix"; version="1.54.0"; sha256="0x1sx319yfxgkscr9r62msq00ddvmzryzn42wy4dh5pvjmgifkkn"; depends=[KernSmooth]; }; 71 + BHC = derive2 { name="BHC"; version="1.46.0"; sha256="09nw4ljc9sn7iw09ha0m614hmdjj193xhhav5x5p07l501kks6h2"; depends=[]; }; 72 + BLMA = derive2 { name="BLMA"; version="1.18.0"; sha256="1ipycmm0kwxdxxff8gc611rf6ki3fw03d26v93y0i287ylim2yj1"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; 73 + BPRMeth = derive2 { name="BPRMeth"; version="1.20.0"; sha256="1x9lasyfpbvcpk4w4g921zwmf2qjc695l2vphjb2k5pw5sakcgkc"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; 74 + BRAIN = derive2 { name="BRAIN"; version="1.40.0"; sha256="117a4vxn3bf80gckyc93vcn285gihdwyd94zj7gdl3008ynmg6ir"; depends=[Biostrings lattice PolynomF]; }; 75 + BRGenomics = derive2 { name="BRGenomics"; version="1.6.0"; sha256="05mqxsk2sjzv9vwwxv8mb9ahlis8rlx4kl0jhsh62fnivbmfny6w"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 76 + BSgenome = derive2 { name="BSgenome"; version="1.62.0"; sha256="1b023dpy8ygq0kd6qy0mk97c66gzpf39y2s0n89kmv61z5sg0jyi"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; 77 + BUMHMM = derive2 { name="BUMHMM"; version="1.18.0"; sha256="0p5an5xc1l0kprgr5dxvqcq8p6spsk2fxf5xh3z05s0qrpx435bv"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; 78 + BUS = derive2 { name="BUS"; version="1.50.0"; sha256="181b830s7ikfz8x7wsw1myjsz706baiz7a350mz7db014hpfx51v"; depends=[infotheo minet]; }; 79 + BUScorrect = derive2 { name="BUScorrect"; version="1.12.0"; sha256="09px9d0ylrjdq1hina7d68w9rr7wnq2vbsvc7syj0hr77dw6lmz8"; depends=[gplots SummarizedExperiment]; }; 80 + BUSpaRse = derive2 { name="BUSpaRse"; version="1.8.0"; sha256="1619clhaqkm4x21plkf41hazbkd5y3a65ab0idpgxy1c03l11hnj"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; 81 + BUSseq = derive2 { name="BUSseq"; version="1.0.0"; sha256="1v6rllmgxsc4rl5a9bwsvg92mm5dad5hw9lvrfdh8599hp09fm3z"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; 82 + BaalChIP = derive2 { name="BaalChIP"; version="1.20.0"; sha256="1ys2gk2mvfr30lfydbixq8ycrqnbag0ib36kkzhhsmz0yr2a9cly"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; 83 + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.22.0"; sha256="10w6vh53qhaq8ap8jmpdj3rbcnkhp18jgik4c0z6zyazpaz5rghq"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; 84 + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.38.0"; sha256="0j05xisdqivv4sj100yx2xz5mqy3yax2yd483xfd3vx9llabl8wl"; depends=[RCurl RJSONIO]; }; 85 + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.30.0"; sha256="14in26rwd1rfq9amp2pxjxm119g2vxy73ylnm0sdjm9ih4wclpim"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; 86 + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.22.0"; sha256="14rs6fk15w2rddyqppf32n0c02gw83b7c8cpmsx11xz6fx7ib5k6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; 87 + BatchQC = derive2 { name="BatchQC"; version="1.22.0"; sha256="0rbpvgxzikpyhxbxksg7vwmy2r0gzw103dykx1awbxkkvrkhl7kf"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; 88 + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.20.0"; sha256="08sy0vv1mrbjvvf3ddgxc0ixrbi2mka2g8gjxmx3ylsb6w7vxcy4"; depends=[Biobase]; }; 89 + BayesSpace = derive2 { name="BayesSpace"; version="1.4.0"; sha256="0dijc66a55mjm9clpx0668by3x7k57ihywjyf042sz8b8pf9ijd9"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; 90 + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; }; 91 + BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; 92 + BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; 93 + BiFET = derive2 { name="BiFET"; version="1.14.0"; sha256="0vidypvphnj76g4ra5ijrgqx2dnzw0fmvdvz35gsqswrr3k20jkk"; depends=[GenomicRanges poibin]; }; 94 + BiGGR = derive2 { name="BiGGR"; version="1.30.0"; sha256="1g01666wwznk148776s4vr1hfi3dfl448dhgk4d1qy2wv6sxh9kr"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; 95 + BiRewire = derive2 { name="BiRewire"; version="3.26.0"; sha256="0ki4rcwjgbixzy5q9s30ajx5zhpl18q50znrb60fchvl4hj9h93w"; depends=[igraph Matrix slam tsne]; }; 96 + BiSeq = derive2 { name="BiSeq"; version="1.34.0"; sha256="05namdzj196rzjg3wqvamj3xpn039dbfhfpmc6p8ifxn9c9dnd3c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; 97 + BicARE = derive2 { name="BicARE"; version="1.52.0"; sha256="1g8vrsc05cysb36gsw8sfmr6dgbh4aji37vcq9qwkmkv3jgvnlf6"; depends=[Biobase GSEABase multtest]; }; 98 + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.0.0"; sha256="0mvl2mh2px315ilfmf9ax5qjz3282l56qm1a0v142bb7cxld13v7"; depends=[GenomicRanges ggforce ggplot2 matrixStats rtracklayer S4Vectors tidyr]; }; 99 + BioCor = derive2 { name="BioCor"; version="1.18.0"; sha256="0ii4g7438lb34ykidkbxw3v3k289k662rgbgayf9gak5avpkb2cq"; depends=[BiocParallel GSEABase Matrix]; }; 100 + BioMM = derive2 { name="BioMM"; version="1.10.0"; sha256="1vrrfwfx4y7kaqc0pk1zmy7knpsg2n55pay3fhs0dig6v5zzdvz9"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; 101 + BioMVCClass = derive2 { name="BioMVCClass"; version="1.62.0"; sha256="0jqgazwz35gz11a7vzanyy2yalzalx0z0rw6y18nmk8dbv01nv2j"; depends=[Biobase graph MVCClass Rgraphviz]; }; 102 + BioNERO = derive2 { name="BioNERO"; version="1.2.0"; sha256="0ddrzv1g46hvm52dzrcj5nbyyw9a16cqk8zg20wnkrh3qw1h4d9p"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; 103 + BioNet = derive2 { name="BioNet"; version="1.54.0"; sha256="05rj14jn4gn0hfn57amf19b8fqwkd3y2ji3mg7m1yg1w7n4qxqsg"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; 104 + BioNetStat = derive2 { name="BioNetStat"; version="1.14.0"; sha256="13br8x4809hrr4ibz6iy5qjza9j6cazmkpvfikvw6bs588csxwf8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; 105 + BioPlex = derive2 { name="BioPlex"; version="1.0.1"; sha256="0fzvr72rjhrq9aldzb2hs61x6f1hbmv1a6gcblmzj9f11hny8va1"; depends=[BiocFileCache GEOquery graph SummarizedExperiment]; }; 106 + BioQC = derive2 { name="BioQC"; version="1.22.0"; sha256="190336qk0plg79gzvfn6wfplsi8nq0nj8508g7m0w3z6bdgwy407"; depends=[Biobase edgeR Rcpp]; }; 107 + BioTIP = derive2 { name="BioTIP"; version="1.8.0"; sha256="0xmy5c4i9gf6d04gara6lbnnldqmzjaascb2pd2ih60jw2mvl4ys"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; 108 + Biobase = derive2 { name="Biobase"; version="2.54.0"; sha256="0kar2kgaayp5l7xv9zcxj61l01m8jlwnppql6qf01wsz36dacgww"; depends=[BiocGenerics]; }; 109 + BiocCheck = derive2 { name="BiocCheck"; version="1.30.0"; sha256="0w9ddicyp9i8rxf92n9pghd9s6bb8jdjikaylrmkydhb7jbhan0y"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; 110 + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.6.0"; sha256="1kpdmpcngnl667bfffp9bkf8c31ipmhsncq0h9bf3a4k8b83pi0w"; depends=[dplyr httr memoise readr whisker]; }; 111 + BiocFileCache = derive2 { name="BiocFileCache"; version="2.2.0"; sha256="11qayqmgv274hc4h1v222sma07wkxjm8002fl6w3yvi225zq1qc1"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; 112 + BiocGenerics = derive2 { name="BiocGenerics"; version="0.40.0"; sha256="0nr5x4r8f2krnfrxm7wrzgzr7nbljypi985cbwx5hxhn95zmfifh"; depends=[]; }; 113 + BiocIO = derive2 { name="BiocIO"; version="1.4.0"; sha256="1qg6v961sbj7qwyjx4z720f6h0kq693p7gc8q99my7gqkbbcxrfr"; depends=[BiocGenerics S4Vectors]; }; 114 + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; 115 + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; 116 + BiocParallel = derive2 { name="BiocParallel"; version="1.28.0"; sha256="0jqgbpjppwinzw100qhc42kc95znq6xanl26bi8m9cq7yggbpra6"; depends=[BH futile_logger snow]; }; 117 + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.0"; sha256="13m6h35938407ajj7fakl50g4p2wsvinkg0r2mwl1zwq88735arg"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; 118 + BiocSet = derive2 { name="BiocSet"; version="1.8.0"; sha256="0ysm68gcalg3d91jx6vmdzra01vc6kvzqnvz557g3rnm0wkx12q6"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; 119 + BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; 120 + BiocSklearn = derive2 { name="BiocSklearn"; version="1.16.0"; sha256="0iscm2h4i7b50h4bfrrcafai14aq5wa5987awpzyk285gwifp6aw"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; 121 + BiocStyle = derive2 { name="BiocStyle"; version="2.22.0"; sha256="0xx6xr01sb5wig94515zxgw24r9fv0g962ajy87741civhq32lbd"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; 122 + BiocVersion = derive2 { name="BiocVersion"; version="3.14.0"; sha256="0qwzkh2alw7xhjprh719la0lg1q38pmjbipy3s2fy79m4xy8y8ik"; depends=[]; }; 123 + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.20.0"; sha256="1j9s8w5y8savcmh70npkanxacq1kipxnwk1wsiw5hwnp1p13ldaa"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; 124 + Biostrings = derive2 { name="Biostrings"; version="2.62.0"; sha256="11qkw863mkfz3mc55v2gmfr4w3xziqfb5pq3hmjqpn8vpw8ax3xq"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; 125 + BitSeq = derive2 { name="BitSeq"; version="1.38.0"; sha256="0pjhmxf6w8jk7rscr73bpfcgdb5ghm3ygiv9v9zwja4klw0xs444"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; 126 + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.2.0"; sha256="0a4xrr13ilw7m7zbsg4ghckd63aw1sx5np79hl5by7g06059r8a4"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; 127 + BrainSABER = derive2 { name="BrainSABER"; version="1.4.0"; sha256="0r4kv85badg42gfqx4dmg05d12fib2l3s52baixwsll87zppd4kr"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; 128 + BridgeDbR = derive2 { name="BridgeDbR"; version="2.4.0"; sha256="0wb03ggiq070f6g9y91icc6plyjx16xwl30hz6f4y19k7mc7k54r"; depends=[curl rJava]; }; 129 + BrowserViz = derive2 { name="BrowserViz"; version="2.16.0"; sha256="097rpcz05hr9h8gzwyhcb4vy57lyswpy7dsg5a746n3zm6v46by6"; depends=[BiocGenerics httpuv jsonlite]; }; 130 + BubbleTree = derive2 { name="BubbleTree"; version="2.24.0"; sha256="14v92dkk0smavsfsbpr4xa5rzyjp0yp0gvsgk4v93dnfb5mngwdr"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; 131 + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.58.0"; sha256="13qq4vwf9ajnx7n4kxhcxbvq599yzrdjifwrqmc8kqip7hiy2dkl"; depends=[]; }; 132 + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.58.0"; sha256="02h0flir0bwki819jl4c4dnh8svw8n32y9fn1p9kakm911gzg125"; depends=[BufferedMatrix]; }; 133 + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.2.0"; sha256="1i67h00admg2yz8c5g8mck0iqdyddy9vnhgy6wdfm070qmicx2g0"; depends=[IRanges Matrix S4Vectors]; }; 134 + CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; }; 135 + CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; 136 + CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; 137 + CAGEr = derive2 { name="CAGEr"; version="2.0.0"; sha256="0a116v3hxrfjm8fcq27vs260wygw0hbj4f3s063za8l45fdpamv6"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; 138 + CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; 139 + CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; 140 + CATALYST = derive2 { name="CATALYST"; version="1.18.0"; sha256="15lah45lf16zh1ankbpjvz8zp38lldvq074nmvb99rhhqys2gbgi"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; 141 + CAnD = derive2 { name="CAnD"; version="1.26.0"; sha256="19c47m0i8sfp2frw6mnzr1bz3n196kgd53bisil6nix1pqsgjqba"; depends=[ggplot2 reshape]; }; 142 + CCPROMISE = derive2 { name="CCPROMISE"; version="1.20.0"; sha256="0wkwgm85kkf7p3vwjvsaq6p7cb2qfzjfqcaba2wgkh8lzjjrglw9"; depends=[Biobase CCP GSEABase PROMISE]; }; 143 + CEMiTool = derive2 { name="CEMiTool"; version="1.18.1"; sha256="0w2y7wkz9r75jblh5mvx096lxlsbx8hn0jp85sfqhnq6ngvil99a"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; 144 + CFAssay = derive2 { name="CFAssay"; version="1.28.0"; sha256="1d38qqfj8dsvgqmwa2krffmvhg12h86jiml8w14my5bfsq1yikli"; depends=[]; }; 145 + CGEN = derive2 { name="CGEN"; version="3.30.0"; sha256="1j1swi2c8wscq022fsjj8f1nqqfbgwpv2jm4dg3djd7zdvp71718"; depends=[mvtnorm survival]; }; 146 + CGHbase = derive2 { name="CGHbase"; version="1.54.0"; sha256="1kfxw126bddfy67cmf8dca9qq4bg7fkxjf8iaikplhvs5hl7bp4d"; depends=[Biobase marray]; }; 147 + CGHcall = derive2 { name="CGHcall"; version="2.56.0"; sha256="1r4y8zakgmdbnpwgp14kwh4iwqgqcmjq2yg4nc7j37p09bw1c8zr"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; 148 + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.48.0"; sha256="1zz4iaxyf5b03xalq58idnkrwcpsvh8zlz6hlxz487caw7c8xx6p"; depends=[Biobase CGHbase CGHcall]; }; 149 + CGHregions = derive2 { name="CGHregions"; version="1.52.0"; sha256="1g337b6fjmbbkpn9pw20z6bvacrlfh582n6lss3qw0s6x6w5cygs"; depends=[Biobase CGHbase]; }; 150 + CHETAH = derive2 { name="CHETAH"; version="1.9.0"; sha256="1nfz8zpkrghfh942cr8xwvrj0d47h1nbf3nv534mp7rii38v07j3"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; 151 + CHRONOS = derive2 { name="CHRONOS"; version="1.22.0"; sha256="18fdvbdbl0rms1fs27yi6lvf3xnn3pjfm1qngaaz4c06v207mg9w"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; 152 + CIMICE = derive2 { name="CIMICE"; version="1.2.0"; sha256="0d2sglrp8ansh8nibbqyg3pvhaaw33q5mzci382pwky05mpy9sjk"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; 153 + CINdex = derive2 { name="CINdex"; version="1.22.0"; sha256="0a73rdhmsprbbq69yvnnhgp86wic255yxrj82k1i1k62f3bsi74c"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; 154 + CMA = derive2 { name="CMA"; version="1.52.0"; sha256="09w0wj2mars83rfws8k6fpfgkbyp7fw97zfcf6d8lbsza639f3cm"; depends=[Biobase]; }; 155 + CNAnorm = derive2 { name="CNAnorm"; version="1.40.0"; sha256="0nrkqycsssrrsf8h2w2wgi4lfyjlqakjx1iacb754pp2jfsr2nl2"; depends=[DNAcopy]; }; 156 + CNEr = derive2 { name="CNEr"; version="1.30.0"; sha256="0w4iqmyyhsb6l9bi8c6qwdh4j6z2i1i5fi85ia9069fpl9d0hpl2"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; 157 + CNORdt = derive2 { name="CNORdt"; version="1.36.0"; sha256="0hw6axs0q22q2amh3v1l5sx60a9spcj9a8y2p6y76p6630zw8l2g"; depends=[abind CellNOptR]; }; 158 + CNORfeeder = derive2 { name="CNORfeeder"; version="1.34.0"; sha256="0qgg6gii5m7vcyfykj1a1cra93nr6d1hvaiw1y051rdd4xsvjnwj"; depends=[CellNOptR graph]; }; 159 + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.36.0"; sha256="0f7n5ib0smcxxcs38qq0s5m8z1bd13rnmhlwzg5wqgf5ymy7k9m1"; depends=[CellNOptR nloptr]; }; 160 + CNORode = derive2 { name="CNORode"; version="1.36.0"; sha256="11l8lw4i8n71ki2fl218wpf7imsxpamxx9abj2axwi467cziq55x"; depends=[CellNOptR genalg]; }; 161 + CNTools = derive2 { name="CNTools"; version="1.50.0"; sha256="198mvxz8zm32mvnq825iivzc8z1ff187g40kb867ck4svn1mysf6"; depends=[genefilter]; }; 162 + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.26.0"; sha256="0v4abknw96zrvir2g676kh81l5jhbxwb10xymzcn1bk3l9vknnpm"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; 163 + CNVRanger = derive2 { name="CNVRanger"; version="1.10.0"; sha256="0pqzs7268c17nh2i6hmg630wfpks2ixyp122iakyl0hxvxd0v2w7"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; 164 + CNVfilteR = derive2 { name="CNVfilteR"; version="1.8.0"; sha256="0ap1k0aikfynwbynwd19l2nkj48d9h86smm7vrrfr1chrmglv84k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; 165 + CNVgears = derive2 { name="CNVgears"; version="1.2.0"; sha256="1vswa2vyxknykims3cgwhbx9v0cw5978639bpgf7d7mwk63h6k6c"; depends=[data_table ggplot2]; }; 166 + CNViz = derive2 { name="CNViz"; version="1.2.0"; sha256="08273c1jwrxcg4xyh6z7aqsy0sgk4ds8jzg8d8dxwscpfjjdbdcp"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; 167 + CNVrd2 = derive2 { name="CNVrd2"; version="1.32.0"; sha256="0kbncmpb8fmfciw5bjl7ng4cxzxl6ihjssg1zsdzkkiq4cxi9x1m"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; 168 + COCOA = derive2 { name="COCOA"; version="2.8.0"; sha256="10ij138g73pd56cxbvf4384xbvv9zija3rs7dpz82n80gwavbm87"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; 169 + CODEX = derive2 { name="CODEX"; version="1.26.0"; sha256="1mafncizgyff8gv1asxcrcv4y5chcfabg8payp4dlmixbxkdy971"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; 170 + COHCAP = derive2 { name="COHCAP"; version="1.40.0"; sha256="0sz3haz6caqlgjzadmpfwbjk5qin7f7jh4ysm0zyga6wpvym6gmz"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; 171 + COMPASS = derive2 { name="COMPASS"; version="1.32.0"; sha256="16ijdi9axr0kr68mk881w2qiih44771312pribxzwsnvs4nvkahc"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; 172 + CONFESS = derive2 { name="CONFESS"; version="1.22.0"; sha256="00mrmxlhf58vas7syr72w9nki4zq8xw0f2zfhw9l0lx59z06yhwz"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; 173 + CONSTANd = derive2 { name="CONSTANd"; version="1.2.0"; sha256="0i0fqzmxcx8gpyd2i1i9ma69qm57r1pj15jir37wh1jgjgqjk1rf"; depends=[]; }; 174 + CORREP = derive2 { name="CORREP"; version="1.60.0"; sha256="0vhhs19bsdg9f2qjmmqyrxfwh0fd54y3m6fkz6anf3mvbs5zqyiw"; depends=[e1071]; }; 175 + COSNet = derive2 { name="COSNet"; version="1.28.0"; sha256="06pzkyarm2fmiwj3s31svyciiwfi1x5yq2889vbqffbfpqfysa1f"; depends=[]; }; 176 + CRISPRseek = derive2 { name="CRISPRseek"; version="1.34.0"; sha256="05dkhm8afbqa8zxgbxpz4vysj25p5wwi7jz21p3k5wp96w0zv7p7"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; 177 + CRImage = derive2 { name="CRImage"; version="1.42.0"; sha256="1r03i15rkz2j1g3z69m5p14vp7p2h9d1aikj2z4zvv661dk1gvqd"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; 178 + CSAR = derive2 { name="CSAR"; version="1.46.0"; sha256="0xqs5ryxazq4naqknm4f2w6vlb4mkmcd5i6530dr5awml1rf458x"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 179 + CSSP = derive2 { name="CSSP"; version="1.32.0"; sha256="06s5q9iq35lbmjw3x1vh5d0zxlwhkdfqa6hk3yl5l77hwwvbwfm4"; depends=[]; }; 180 + CSSQ = derive2 { name="CSSQ"; version="1.6.0"; sha256="0f3aivrh7jazs67r78lgkqdmv8k06ny0pwvjnzxwn8zvf4mkbw0n"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 181 + CTDquerier = derive2 { name="CTDquerier"; version="2.2.0"; sha256="0pkcxbvlik0mh8c551zaqbq1hzlaivr4icsqnqnfisgrj3z6i0vv"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; 182 + CancerInSilico = derive2 { name="CancerInSilico"; version="2.14.0"; sha256="16bsfi5alh0sa42bqigbdv9xs97yjfrrhxbpi16fx9ah55brgjbc"; depends=[BH Rcpp]; }; 183 + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.20.0"; sha256="0hr9883yfghnv7san896sivlryd5da911s7cyngk5xajlhlq1yn7"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; 184 + Cardinal = derive2 { name="Cardinal"; version="2.12.0"; sha256="1mlc41jnqwb4dwpjlp4djif4wmbby03g0g1fz0f2lp6ava5axfzs"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; 185 + Category = derive2 { name="Category"; version="2.60.0"; sha256="164zp4la9rqnp5vpn2y2p6plc5yxyk2kmn0z3d2flla54zc1b427"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; 186 + CausalR = derive2 { name="CausalR"; version="1.26.0"; sha256="1q8xr6nl6ynnk2n6s1cljnl8r47b04my8k2j20sn87d13fkc6m3k"; depends=[igraph]; }; 187 + CeTF = derive2 { name="CeTF"; version="1.6.0"; sha256="0927nf56lwpciczmap02n2bp007yf3yd10hndcp9kgn7y61pk5ym"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; 188 + CellBarcode = derive2 { name="CellBarcode"; version="1.0.0"; sha256="19i37q7d1j8wgyyiaivss1adf203c9yjz3czvdam0d2g7bhvp0zd"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; 189 + CellBench = derive2 { name="CellBench"; version="1.10.0"; sha256="18f6by5i8avj3lx5h1k5c7mwwgnri22r4b0jkd56ry01iz2wci6x"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; 190 + CellMapper = derive2 { name="CellMapper"; version="1.20.0"; sha256="11q6b6m4lq4bxq62lgyxb0qp4s1yzvzajn9g0hiy02zisz5k47cz"; depends=[S4Vectors]; }; 191 + CellMixS = derive2 { name="CellMixS"; version="1.10.0"; sha256="032p10pnb81qrspsj5c1wiaw9vzqnhx6whd10ayz6d0am9ifjf9s"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; 192 + CellNOptR = derive2 { name="CellNOptR"; version="1.40.0"; sha256="0bqcrpz3jqsn383b2jqhd7kmf860ywdm3qjhrf4nywpyc0j9f3iq"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; 193 + CellScore = derive2 { name="CellScore"; version="1.14.0"; sha256="17zs6y08z1l4s51ishb5cp2k70yc1cinh211r76mrdlpdp9rxx5c"; depends=[Biobase gplots lsa RColorBrewer squash]; }; 194 + CellTrails = derive2 { name="CellTrails"; version="1.12.0"; sha256="0rwirbvrfn03xrc0jjiw24dg9c49wznckhjm9kibd10n135x6l4g"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; 195 + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.4.0"; sha256="1gqr12dbm1g2gz4ixx3r8f9as7m5nd0vcj0k3hsk9njs938lfzk4"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; 196 + CelliD = derive2 { name="CelliD"; version="1.2.0"; sha256="06jdqxa38pjvx0z1yqmhghn6x3dkq0zinc84kvxs9ls81hi6h20l"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; 197 + Cepo = derive2 { name="Cepo"; version="1.0.0"; sha256="091hbppf6jmsw7bh3m1xasf9vwh4xf6m6sgqrqi8hvvp37vb7k67"; depends=[BiocParallel DelayedArray DelayedMatrixStats ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; 198 + CexoR = derive2 { name="CexoR"; version="1.32.0"; sha256="18x5qj2z4nxbgj0i7si0rk57hlqwxmmz97dvsfvbkw1akcw8psb9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; 199 + ChAMP = derive2 { name="ChAMP"; version="2.24.0"; sha256="10wyfcc36qfcwpzgsj2vnmjy694igk81zd35aij51fs4s1mhmf2k"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; 200 + ChIC = derive2 { name="ChIC"; version="1.14.0"; sha256="0dd2qm6ab46yq7l4ai3q2bqsnb2kmg6la4lyf1wz3pbvrpfhb5py"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; 201 + ChIPComp = derive2 { name="ChIPComp"; version="1.24.0"; sha256="1wdy92y5l3wa3zgg59w69rd7gdwf4z1waa4i2cccniccz463p1xq"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; 202 + ChIPQC = derive2 { name="ChIPQC"; version="1.30.0"; sha256="1vzrdlli9702m69qipj7gxbjvbycbr7s09gh4jas6apycprg9jw3"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; 203 + ChIPXpress = derive2 { name="ChIPXpress"; version="1.38.0"; sha256="1wypkh9pq3v9lwmhwdrnf6a2jm2i2nc7kv9nppcyknf9qhpkn97z"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; 204 + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.16.0"; sha256="1ibbfsl2gz5634rljy4bin9h9g5bxzig3z65bvayp4ldmfiz91dm"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; 205 + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.18.0"; sha256="1hh3mhfcngyx7cpzns8mjqviy8vfzrvxpv6nyizflpfmsr39mxfk"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; 206 + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.28.0"; sha256="05fbq8zvww1nlyykrri0hf4248i1i7w5cr453giagmjq7lgg4v3b"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; 207 + ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.0"; sha256="1x8px8ylc231g87rd48kmy9y36h26rldbmqjkcj4mgaldvbsj0rp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; 208 + ChIPseqR = derive2 { name="ChIPseqR"; version="1.48.0"; sha256="05hxxqmjxpry0j80kyz2400azni0dc64ps7cxfi11h243japhbsf"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; 209 + ChIPsim = derive2 { name="ChIPsim"; version="1.48.0"; sha256="1pdsfsk8c92pz22qz2x5rsmk7j9v3dw9c1p96il533ycjafq1xqd"; depends=[Biostrings IRanges ShortRead XVector]; }; 210 + ChemmineOB = derive2 { name="ChemmineOB"; version="1.32.0"; sha256="14zwckgg8wqcdjmdk3i8p7f82df4izipq2lfck98l4i0z2p3y0f3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; 211 + ChemmineR = derive2 { name="ChemmineR"; version="3.46.0"; sha256="069xd7if7fs69afmamgl6wrkzpnk97ic6z5ix4vvlzkb078dm0p8"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; 212 + Chicago = derive2 { name="Chicago"; version="1.22.0"; sha256="0nz9v37p7zl8yw3ykdbsb3izcwgx349wvrhwfyyn9h3jxjfafngn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; 213 + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.48.0"; sha256="08wvxxk59zfaclxzbmdm0bld586f76571qqh0jb0dgqw7cg6p0lf"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; 214 + ChromSCape = derive2 { name="ChromSCape"; version="1.4.0"; sha256="1cpbbzm3lhp1qmirj3j1f2crrbfwap6krrvqshv742qgc1wsg7xb"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges ggplot2 IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment Sushi tibble tidyr umap viridis]; }; 215 + CiteFuse = derive2 { name="CiteFuse"; version="1.6.0"; sha256="09bkzccl4ncbrcblr6harih2s2y69r6237hvwxlq7yfz1im9sj46"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; 216 + ClassifyR = derive2 { name="ClassifyR"; version="2.14.0"; sha256="18syv3r0wm6w1pmab8pgnc83sx7rafjvbn3v4889mhii09x6kk53"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; 217 + Clomial = derive2 { name="Clomial"; version="1.30.0"; sha256="0d2vqxd2xyis5wrjb3apss262wriijqi95arga4aj1d8x523zr17"; depends=[matrixStats permute]; }; 218 + Clonality = derive2 { name="Clonality"; version="1.42.0"; sha256="17560pvdykdvzfqnb3i1qqnlvrsd2ahan6ar8ys49y3p9xrjrd4i"; depends=[DNAcopy]; }; 219 + CluMSID = derive2 { name="CluMSID"; version="1.10.0"; sha256="14vv63b9nlii3hhgzyl4mqnxln85rw1m8cb37ilrg1yg2swmvv97"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; 220 + ClusterJudge = derive2 { name="ClusterJudge"; version="1.16.0"; sha256="0dpmf5s4gxv8vn33xrinmhwbgn4417zdqysv9pqhdzjqxwxcn6qv"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; 221 + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.22.0"; sha256="0kfq4s84b54f9hjhix0f9w3bn12a9s253n1k4aj30s4hjzcy180d"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; 222 + CoCiteStats = derive2 { name="CoCiteStats"; version="1.66.0"; sha256="1di153w94mqq03w6l2pri6zsv67x8h5z5xnswwxbyz3693902m82"; depends=[AnnotationDbi org_Hs_eg_db]; }; 223 + CoGAPS = derive2 { name="CoGAPS"; version="3.14.0"; sha256="1ykp7jmnc32j2s0gf0l1xpk5kpfwqffq2526l8vjqia67zacgmdd"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 224 + CoRegNet = derive2 { name="CoRegNet"; version="1.32.0"; sha256="1nwx7mdlqncswfilwpxplpfmy2lkdhq1d8p23jw1dd194w346y7l"; depends=[arules igraph shiny]; }; 225 + Cogito = derive2 { name="Cogito"; version="1.0.0"; sha256="0chzlwlv0sjyd4m52m9w4y79lpmc6xrlj29l2kyv3kj1qzwqgfdg"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 226 + ComPrAn = derive2 { name="ComPrAn"; version="1.2.0"; sha256="0sqy9118gg0hicdi15idi65g95ni67zwpq9frbdp6jyz4564i2np"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; 227 + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.10.0"; sha256="124w74mk0zk035wyr7cimblzx5blags4n5c8f83mp7iimxcb4gcn"; depends=[circlize clue colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; 228 + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.58.0"; sha256="13z43qbk9z7mvy8v8k185m6n020i6ahb18pm4q88rs75qlklzdkr"; depends=[ALL Biobase cluster]; }; 229 + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.10.0"; sha256="02zp86818c0n4wjwsw4xpcw5nxvdjpijg9gczmrr87jzkd6lwf8x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; 230 + CopywriteR = derive2 { name="CopywriteR"; version="2.26.0"; sha256="0xm5gjzi4r1xzyn7r669blqxhyhmbk9rh9k2gn696j14hbhc1hcy"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; 231 + CoreGx = derive2 { name="CoreGx"; version="1.6.0"; sha256="12825lplihp10wvvg90gkk96vabvycfi32kpbs2garbzcjshqygh"; depends=[Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; 232 + Cormotif = derive2 { name="Cormotif"; version="1.40.0"; sha256="1dzsnfgrgjgjk9a1jbsjfarcjvxnvswph495lcaiw8fh5mibf9qb"; depends=[affy limma]; }; 233 + CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; 234 + CoverageView = derive2 { name="CoverageView"; version="1.32.0"; sha256="0sb1h5qsk41c9xisq73agqh502wv6p2j1k45s32a4bkdynf696as"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; 235 + CrispRVariants = derive2 { name="CrispRVariants"; version="1.22.0"; sha256="0jvrsc0fz8li8v6xigvkq514x0pirnbrp7lgvjqxxj8i3l7y536i"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; 236 + CyTOFpower = derive2 { name="CyTOFpower"; version="1.0.0"; sha256="1h2dmnkjv62ws7ljixq1nj50hnqk3r70xhzkh159cjkirf9r4xwn"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; 237 + CytoDx = derive2 { name="CytoDx"; version="1.14.0"; sha256="1wrfcmg0prz5qywalrzyql08aw2rglkz14fn6j670av40yblskhv"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; 238 + CytoGLMM = derive2 { name="CytoGLMM"; version="1.2.0"; sha256="0q5d86kx16nlsckp3zmh6j1irn0l8y40lx17pp99n32mzi9b7c02"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; 239 + CytoML = derive2 { name="CytoML"; version="2.6.0"; sha256="16rgsc2dz5b8lm3ma8nh9wiknrdnvfjcsij7809rmcfs0gn1arcz"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; 240 + CytoTree = derive2 { name="CytoTree"; version="1.3.0"; sha256="1nb17lhpzzqd3xvs4ccdc5kcm4jvgk7w66nyv3vd8s68d7cf9rnp"; depends=[Biobase BiocNeighbors cluster flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; 241 + DAMEfinder = derive2 { name="DAMEfinder"; version="1.6.0"; sha256="0g47m8ac1rgllhfcbss0200m5jcrasns15x03db601m1jy37mcj8"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; 242 + DAPAR = derive2 { name="DAPAR"; version="1.26.0"; sha256="071dkv6x979wyl214wjllkacvs6izjwjkcxvqpzk9gwzlrs8h0hg"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; 243 + DART = derive2 { name="DART"; version="1.42.0"; sha256="1wxg3szgsqy33z4vp150w5kg2nxyxqs3az5vxbajz5z9q7fg3zrb"; depends=[igraph]; }; 244 + DECIPHER = derive2 { name="DECIPHER"; version="2.22.0"; sha256="0a9k3f70jmd17kxf1zjmdzrfjs0dmwfad2zgz6wihxh5s1shc8qm"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; 245 + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.14.0"; sha256="0qbmw70rqmfixrbnb2jzvvqi54j2rl6gy1bspb143gsadh8z2s9i"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; 246 + DEFormats = derive2 { name="DEFormats"; version="1.22.0"; sha256="0c9ajkrjzw3rdnfnjj7xn9pdsykdzn230mi01138srrkvcpra856"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; 247 + DEGraph = derive2 { name="DEGraph"; version="1.46.0"; sha256="1p8zzx8vbzhxnpvd7cbr4g1r87lys41cx4n60rkx53c0pqlnabsn"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; 248 + DEGreport = derive2 { name="DEGreport"; version="1.30.0"; sha256="0zmqz8gvpbka5cnwxx7w00xjaxlhmrni1lvacnippy63lpl2w4sz"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; 249 + DEGseq = derive2 { name="DEGseq"; version="1.48.0"; sha256="1bx6xj71k7126ckpr1b7dh1ndmb9yvp9wrrr8lyfcq5birgpf22n"; depends=[qvalue]; }; 250 + DEP = derive2 { name="DEP"; version="1.16.0"; sha256="122gxaslxl3q66ncqndkmnjf6kx2gkj880cf2khwivh58sg6y410"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; 251 + DEScan2 = derive2 { name="DEScan2"; version="1.14.0"; sha256="1nw1id97vnfmnj7249zh29176zjyh15lx1vbkcr6kxri4x115l4x"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; 252 + DESeq2 = derive2 { name="DESeq2"; version="1.34.0"; sha256="0whk29zrmv9mrlc4w5ghy0fd29v8hfr8jccwgrn59mf3mkmfb2b9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; 253 + DEWSeq = derive2 { name="DEWSeq"; version="1.8.0"; sha256="1ggj4in0sj9wb367s19v56f0jnfdcsylndjwpp4j02kwmc2wfl0j"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; 254 + DEXSeq = derive2 { name="DEXSeq"; version="1.40.0"; sha256="1wd4bjd0a53s689yvb2lxzdiy0synh6ncfcly3cfw37kpdj8lds1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; 255 + DEqMS = derive2 { name="DEqMS"; version="1.11.1"; sha256="0nm49sxxi0j4czly8rjyxp41wlcihbn802qmljs8x6y6wvp3464l"; depends=[ggplot2 limma matrixStats]; }; 256 + DEsingle = derive2 { name="DEsingle"; version="1.14.0"; sha256="0x0xnylf036k320r59pqa273i59jcwxiwsw4fyfqqrliyw7fxa4c"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; 257 + DEsubs = derive2 { name="DEsubs"; version="1.20.0"; sha256="1b11hhs7r1r24z7w9mimj1bpj7y5j7i9vq9sw6ll2dlghyazc7di"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; 258 + DExMA = derive2 { name="DExMA"; version="1.2.0"; sha256="0z8la638q8jij95bnyfrrjhv4abda5f3shr9jwg7g21kr3dx20rf"; depends=[Biobase DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; 259 + DFP = derive2 { name="DFP"; version="1.52.0"; sha256="1b3h4zsqp75ac6zq8yc73pila8khb57hlh5yj9md8kgxqcg4b447"; depends=[Biobase]; }; 260 + DIAlignR = derive2 { name="DIAlignR"; version="2.2.0"; sha256="1py41l19brb2z7iv1fj9jkw213pn5aqwiq47bz4iha4jb42rdn64"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; 261 + DMCFB = derive2 { name="DMCFB"; version="1.8.0"; sha256="03mg620cpn13avvd962akmjgd2d0ph7b7zgb22zcidsfk8q9znmh"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; 262 + DMCHMM = derive2 { name="DMCHMM"; version="1.16.0"; sha256="0r12m3ldbi1h0fdg4hgxfq1f0lrz49a08i7kr6imdspzm8hl2j65"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; 263 + DMRScan = derive2 { name="DMRScan"; version="1.16.0"; sha256="0iza3yyjmggkxgn24raiwzppf4lvdj1lgq34lpk08mf6p5v0v601"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; 264 + DMRcaller = derive2 { name="DMRcaller"; version="1.26.0"; sha256="0qn3y2nj0pyy9kqpbv8nwsiypwl6kixxs2yj3bvhkhb5dgqj6p6w"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; 265 + DMRcate = derive2 { name="DMRcate"; version="2.8.0"; sha256="07p1a4sbavh2c3qkxak3zfcgvjqy31wc30mvlx1k8v965dalfxyw"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; 266 + DMRforPairs = derive2 { name="DMRforPairs"; version="1.30.0"; sha256="1f8b63chg3jrqbf669l2nk3a8wy5rya545zbypgzr2r51s284k7b"; depends=[GenomicRanges Gviz R2HTML]; }; 267 + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.10.0"; sha256="1dj4c8h648ckzrz0k6qrzvfgqz00wj0pdahhp35nlrldcavp90p6"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; 268 + DNABarcodes = derive2 { name="DNABarcodes"; version="1.24.0"; sha256="07yaz98r18mjny1ilmfnjxcra7xpklnd183pw0kasvsri01ccwxg"; depends=[BH Matrix Rcpp]; }; 269 + DNAcopy = derive2 { name="DNAcopy"; version="1.68.0"; sha256="19ax431i97r49gh1232vf8mgmkvc6k26lnq44j3g10n6q01czswm"; depends=[]; }; 270 + DNAshapeR = derive2 { name="DNAshapeR"; version="1.22.0"; sha256="1ypkp03ciia9hj4hhh9dlkx4hsrivph2y3irxhyqn7wjgh6fmnnl"; depends=[Biostrings fields GenomicRanges Rcpp]; }; 271 + DOSE = derive2 { name="DOSE"; version="3.20.0"; sha256="0hj5hn54g8a3gj4q9200bffcy9m1mvkiwbg60ysv1hxxbpi57kmv"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; 272 + DRIMSeq = derive2 { name="DRIMSeq"; version="1.22.0"; sha256="0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; 273 + DSS = derive2 { name="DSS"; version="2.42.0"; sha256="1a6igpkics6lyv7cqcg4iakxrwk928ha7xv7yvn0j2yi9h2akqmi"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; 274 + DTA = derive2 { name="DTA"; version="2.40.0"; sha256="195pmjs1yhlw241ha0v8jpd1fwmgd6pp6s8bhbhjinkwplinw2g1"; depends=[LSD scatterplot3d]; }; 275 + DaMiRseq = derive2 { name="DaMiRseq"; version="2.6.0"; sha256="0wzbfa28f97hqgrp2514fpk8d3w0yxj0j5llpnvy19b7z0fxr43i"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; 276 + DeMAND = derive2 { name="DeMAND"; version="1.24.0"; sha256="15k9m8rkrs7mhi07f26d6600k5aymrz19fdsg8078n3155bgl6mc"; depends=[KernSmooth]; }; 277 + DeMixT = derive2 { name="DeMixT"; version="1.10.0"; sha256="0x3kjcn0878w36rqd808ca1iicv4dki1f8066s3ry7806dhcxiln"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; 278 + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.36.0"; sha256="1ax9lx5qg4k5c1mv35bhpfh9q8dbfbv4rf4y1vy994qxmnq4rwsv"; depends=[ggplot2 limSolve pcaMethods]; }; 279 + DeepBlueR = derive2 { name="DeepBlueR"; version="1.20.0"; sha256="16sdsvmp54k6zj1xcxmq0pdpm91q9ff11p3c83ii30brshj69bhi"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; 280 + DeepPINCS = derive2 { name="DeepPINCS"; version="1.2.0"; sha256="0pw7bda7qa0sdj0yz2iazvxkrl2nqqvqx74i4czzfyp6q94j6r1k"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; 281 + DegNorm = derive2 { name="DegNorm"; version="1.4.0"; sha256="0f3vpynm5g83lpja5xg9nvpssyj6lh5cw9syg242j3mlrjim9bif"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; 282 + DelayedArray = derive2 { name="DelayedArray"; version="0.20.0"; sha256="1cm6zh01mvhiq7zrik7q3dmgxinyjz1nyg6rfj93kpkvcb5d4wpj"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; 283 + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.10.0"; sha256="1vifbqka5k1rmimqcpl6218ragr9dq9rzxizx9nff5ilsva21f9b"; depends=[BiocGenerics DelayedArray S4Vectors]; }; 284 + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.16.0"; sha256="1pqwkk39rfhcnhmgchk0gfmm4jgasl19yq0nhhwsfj45y2vk6kjk"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; 285 + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.2.0"; sha256="1hi9pvxny8nm4akhshicksd04p7vflqa3m38k6kcs50slhgdp5ys"; depends=[BH DelayedArray dqrng Rcpp]; }; 286 + DelayedTensor = derive2 { name="DelayedTensor"; version="1.0.0"; sha256="0yg7r6j7r1sikc4wi6khh3dsbflzpj51sdh41q337lkmlxagwpbb"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; 287 + DepecheR = derive2 { name="DepecheR"; version="1.10.0"; sha256="1500jivij7zdycdd0i0b7mgp44w4z0hqnpzqbq8nhvzzdigic8x9"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; 288 + DiffBind = derive2 { name="DiffBind"; version="3.4.0"; sha256="15p4jd9k520va6kzizkgsl4a18kh5r8i50qfdkv7xazsfhvxjm3i"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; 289 + DiffLogo = derive2 { name="DiffLogo"; version="2.18.0"; sha256="1axpyjr86a176rgv9wnrk04dv9llgkw9vr7h00scr6jw77wqya4n"; depends=[cba]; }; 290 + Dino = derive2 { name="Dino"; version="1.0.0"; sha256="1k83rhva7bxk1w6qvvdhx0r95p9nbzfdm3m7g6wpyq3qp0ifx5xp"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; 291 + Director = derive2 { name="Director"; version="1.20.0"; sha256="1f0a8rkpz698c5a41j7ii7ahxxaqn92rhx8sh3q66gpv0br8h44g"; depends=[htmltools]; }; 292 + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.36.0"; sha256="06nallp9jj2vmaa7d18g6hiymjc109szdv8sp51r87n7s38bvyq6"; depends=[BiocGenerics IRanges S4Vectors]; }; 293 + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.10.0"; sha256="1cb51c6bmvc1vgxih3sqcalbzhxn1b9ilf1q8j0ijwk7sxsdhy5l"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; 294 + DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; 295 + Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; 296 + DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; }; 297 + DropletUtils = derive2 { name="DropletUtils"; version="1.14.0"; sha256="1zi9pm0ns7w9ga9567rsbm35gyl4fpgic0fvsj5a9ppagqw7ag8z"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; 298 + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.36.0"; sha256="19plcigawh4c4z1dxn1c0kxbdnrsz2fgfyvmcnj0025xscdk4zay"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; 299 + Dune = derive2 { name="Dune"; version="1.6.0"; sha256="0n267fw1yna1fpg5gcilmf0ijavy2c1ry0wcccp2cdzhs77cx7fi"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; 300 + DynDoc = derive2 { name="DynDoc"; version="1.72.0"; sha256="1ix1kcjrmbv7hqsmihgazh7igrh13bxhgw36ibihh07sflrgf1hm"; depends=[]; }; 301 + EBImage = derive2 { name="EBImage"; version="4.36.0"; sha256="030vpn55ppfqq4408c4db4w40d17x1yq6zajb11p2glikvm1q619"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; 302 + EBSEA = derive2 { name="EBSEA"; version="1.22.0"; sha256="0vzbc8kx00ylyi3qiz92njnbpaqadnabf97kd9l6kzxj0z8mfig2"; depends=[DESeq2 EmpiricalBrownsMethod]; }; 303 + EBSeq = derive2 { name="EBSeq"; version="1.34.0"; sha256="1p8i04v5h6mbc8zqbf3rifbwwylzzc1fqrkhh0a0mbcgq2nv7i9m"; depends=[blockmodeling gplots testthat]; }; 304 + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.28.0"; sha256="1q94fdaw9jaqvi3b3va80fgiinl0v58pyw8ja5mkm438yfmyzwhv"; depends=[EBSeq]; }; 305 + EBarrays = derive2 { name="EBarrays"; version="2.58.0"; sha256="10dw6c93rmpknzf4cnhw3y7lb27q4xq7x7wirl2a7qywdj0yj2g6"; depends=[Biobase cluster lattice]; }; 306 + EBcoexpress = derive2 { name="EBcoexpress"; version="1.38.0"; sha256="16l40i20ybkqjjvgifm4a0zini6jnrx3y5x6fj863kvxrh550hrb"; depends=[EBarrays mclust minqa]; }; 307 + EDASeq = derive2 { name="EDASeq"; version="2.28.0"; sha256="1vygfdxbjcww7sqzc3j7sp7w13dx10vlzy9z31flf7345qp6blj7"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; 308 + EGAD = derive2 { name="EGAD"; version="1.22.0"; sha256="1kr79qm5na04p0s31whd88zmrp9sy8qm1ypngpgxch628yf93l9a"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; 309 + EGSEA = derive2 { name="EGSEA"; version="1.22.0"; sha256="17q0cjvkrqhmzcgvip4mkdz02aa9rm3svfv2s689fhz2kmwljca8"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; 310 + ELMER = derive2 { name="ELMER"; version="2.18.0"; sha256="0kn5yr9yf49kcipjn4z7bcpzj74kcfkhb8q9cfnx659xnksfb27d"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; 311 + EMDomics = derive2 { name="EMDomics"; version="2.24.0"; sha256="0rf83brhzdqsnwg3vlby0a4kf8khv2g7rmxkk31r44apkyspzapl"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; 312 + ENmix = derive2 { name="ENmix"; version="1.30.0"; sha256="1c20i0h00kj0fpc6ij7sm8hcfd41kfqb3l07pj3dpc93n2r3fr8s"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges irr matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; 313 + ERSSA = derive2 { name="ERSSA"; version="1.12.0"; sha256="11lak418vmswi9mz4h97pxb68m7ihqbg6z93bvnakka65w997ki8"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; 314 + EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="02kfcj2wldqfrkrlwss5k5vb5mgi37jrp2c3kx556k25xkzh19vq"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; 315 + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.22.0"; sha256="0yra1mp1iz4rh6dvlxv0i0f1ibqgl9giz3r4csg5l0wxz60fbxzm"; depends=[]; }; 316 + EnMCB = derive2 { name="EnMCB"; version="1.6.0"; sha256="050mzns1zh643pxzqzc935hwczpk7xwa16qq7z88cagab2r8yx7j"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; 317 + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.12.0"; sha256="19l1yz522hzmwwsgqqhwqrazqf6w015fi3j85n9pxqkyisz2r2x2"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; 318 + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.24.0"; sha256="1wbbasz3467jg6anzm57y4kijsysfkah1l5f82qw6ckrhv3rxylc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; 319 + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.24.0"; sha256="0f8arb1i4cxa65yp15s3nysr0gzq9hvmv6sfbbxq0qfp83dji9c9"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; 320 + EpiDISH = derive2 { name="EpiDISH"; version="2.10.0"; sha256="1fqyg3hfc40d1pvw02d95wr1lm2wi82yx3vrrsf7gs53i9gdm2q0"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; 321 + EpiTxDb = derive2 { name="EpiTxDb"; version="1.6.0"; sha256="0vmn4wqxwczq0ckx0pq20jbjp3a01nxj3knax1d3jx77cqqkwsaz"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; 322 + EventPointer = derive2 { name="EventPointer"; version="3.2.0"; sha256="0kg5psygc410gx6prb8as00csh6v3s1psbcn2ym4i4k5wnyzmbn3"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; 323 + ExCluster = derive2 { name="ExCluster"; version="1.12.0"; sha256="1fmijpvkn2qjwl8cqzwclybnfqyrdckxwfc6f1zird770bqyagjv"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; 324 + ExiMiR = derive2 { name="ExiMiR"; version="2.36.0"; sha256="1vf1241n6f0w7p8m8vwb30dlhybw5ddhp2bgwmn7ml6rfbkidmnk"; depends=[affy affyio Biobase limma preprocessCore]; }; 325 + ExperimentHub = derive2 { name="ExperimentHub"; version="2.2.0"; sha256="15las4qmqvrn81hczxa3ylikqh54kp1lg9r8rcyfvrx5l0kgwlfq"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; 326 + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.20.0"; sha256="16xmsq3li7g3qvrfif6yzj5p6qmna6lqfkf1z2bn7k6bpskid3w4"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; 327 + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.4.0"; sha256="1ccz555f5mfvii99w66f076cb22f0ksjxmq9f6bsfxjzsbc7ssnh"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; 328 + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.6.0"; sha256="162g6zfdhr6gibyqkfwk4y2fd4wmbzwx1frf8rkw6m7ny3mc7s3g"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; 329 + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.22.0"; sha256="0y3gq8ffy527gnyhhqvwjd58a3df50b27d5fvnd37cjm36hk1sbr"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; 330 + FCBF = derive2 { name="FCBF"; version="2.2.0"; sha256="1yj8ngsm6sxph3wh14kkam8ndvxfrvfag04vp4ny7aqz2a16prdg"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; 331 + FEAST = derive2 { name="FEAST"; version="1.2.0"; sha256="05ybk14np0r618whkf99w3n1zk39sz8mjdlcbrdixvphs4wafjpm"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; 332 + FELLA = derive2 { name="FELLA"; version="1.14.0"; sha256="0xs4qky42nz80qmbnb5b925ks76xxpa5mymvrcllzzhbyax2dddc"; depends=[igraph KEGGREST Matrix plyr]; }; 333 + FGNet = derive2 { name="FGNet"; version="3.28.0"; sha256="0mz728i1ylbhwxb41xghrl7aaz5a3s3iaysi0hl7jjmiixvscp90"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; 334 + FISHalyseR = derive2 { name="FISHalyseR"; version="1.28.0"; sha256="0z9wlk98xicc6bcyx11q25sxrfdiiwcx32bvp3l3xi5r99alwwlp"; depends=[abind EBImage]; }; 335 + FLAMES = derive2 { name="FLAMES"; version="0.99.31"; sha256="098fg6jky98y0wlrrinmjb7r4yf9s40c2kwp0xrn0z5paczj4y56"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; }; 336 + FRASER = derive2 { name="FRASER"; version="1.6.0"; sha256="07xj7fznqmsc71j1s6h7g8jq8cg93hys3q20f7lja6l9032rl5rx"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; 337 + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.30.0"; sha256="1b69g11klf2av1an1h50vz6bkpkjg4v1a2mi9lj0bmwsi7kb7j32"; depends=[fda MASS]; }; 338 + FScanR = derive2 { name="FScanR"; version="1.4.0"; sha256="1xsbf8vxck17s1shs2gxls02wzm3qr9wy8iwr8zqk9gsm5niax4z"; depends=[]; }; 339 + FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; 340 + FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; 341 + FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; 342 + FindIT2 = derive2 { name="FindIT2"; version="1.0.0"; sha256="1kpxkr6qrbhk5a9lg2z0ga6lsb5s9ll9f3cglpyx35494a0d2zp6"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; 343 + FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; 344 + FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; 345 + FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; 346 + FoldGO = derive2 { name="FoldGO"; version="1.12.0"; sha256="07wk3i9q8m8jaamwfwnnxlm3xc0r7frlk6s2mndkkjs1sfrdb5z3"; depends=[ggplot2 tidyr topGO]; }; 347 + FunChIP = derive2 { name="FunChIP"; version="1.20.0"; sha256="0mgc8jv11cfn5fqlmjnhb3kvf6rzvy5win8vwnk57qsdb2w3ahfh"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; 348 + GA4GHclient = derive2 { name="GA4GHclient"; version="1.18.0"; sha256="1nc2707n5w5an60wqcya6jp0yj9cga0kc4ls9klkky8wyzf8apc8"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; 349 + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.16.0"; sha256="0yrrbml450hl5zi1jjwpsiwxv4fkypxkvrvvqcn6yml5vr85wwyv"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; 350 + GAPGOM = derive2 { name="GAPGOM"; version="1.10.0"; sha256="1b18fq56f88ismi7k9i5r1li7mp6hb1hv234j87xidlwm1dxqsvl"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; 351 + GARS = derive2 { name="GARS"; version="1.14.0"; sha256="0riypxvxqx9jclqcpg657giszmnvvpzjl7glinf0snjzppgxapv1"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; 352 + GAprediction = derive2 { name="GAprediction"; version="1.20.0"; sha256="14a273pkvwcbhi1ymlbd63rn560pb0lx9hkl8fsxs1hixjy94zp1"; depends=[glmnet Matrix]; }; 353 + GCSConnection = derive2 { name="GCSConnection"; version="1.6.0"; sha256="0hdywmm7f2va4vwd7pygb2l8a9ajf6pz74i05vmimhblkf9jbr69"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; 354 + GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.4.0"; sha256="0k2dmiyxfpdr1jzrkkkpj0rqd1s13rwmqfrbc5xkanc5z6wqd8hc"; depends=[]; }; 355 + GCSscore = derive2 { name="GCSscore"; version="1.8.0"; sha256="0zb2fcwqbxl59bvhj73yrb9sq2zld451abb1nmxj92yipbmwjgn6"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; 356 + GDCRNATools = derive2 { name="GDCRNATools"; version="1.14.0"; sha256="1h0gfi6mhr5kzwhqxkzgxz12abkn7svnbbzga70pp7az8m8vxmnn"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; 357 + GDSArray = derive2 { name="GDSArray"; version="1.14.0"; sha256="07b3025fcjrq1kvpb7g6kxqwmk6pwibnv8krmn11ddgl2606k8c3"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; 358 + GEM = derive2 { name="GEM"; version="1.20.0"; sha256="19jars2vajfgy2v9xrgp45gc2yn2hq31d9ikdpnkd9gvpqm99nkv"; depends=[ggplot2]; }; 359 + GENESIS = derive2 { name="GENESIS"; version="2.24.0"; sha256="1n1h9aiyn8f8cznm8dkvndm3708nls2xr4v21sspz4vj8ahwvgaz"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; 360 + GENIE3 = derive2 { name="GENIE3"; version="1.16.0"; sha256="0ms769267pimrx3xwwkgjy03qilkxxs7xwhzfca01f65i4n3l6fw"; depends=[dplyr reshape2]; }; 361 + GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; 362 + GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; 363 + GEOmetadb = derive2 { name="GEOmetadb"; version="1.56.0"; sha256="18v3h7518cc4fzdi7ivng81316012mry4ihyrldm85zgm4c5dign"; depends=[GEOquery RSQLite]; }; 364 + GEOquery = derive2 { name="GEOquery"; version="2.62.0"; sha256="0fkx4jh1s76l015vwikkryarlx6iihb1z935nzpdhah3rpqx3b3z"; depends=[Biobase data_table dplyr httr limma magrittr readr tidyr xml2]; }; 365 + GEOsubmission = derive2 { name="GEOsubmission"; version="1.46.0"; sha256="0p0w55j7ij1242sa76bhgqwnj5zi0bh7s7qa14iga4ldigpxr63b"; depends=[affy Biobase]; }; 366 + GEWIST = derive2 { name="GEWIST"; version="1.38.0"; sha256="0xcywidrs6jvps93iv3qvr9ai1bdzn95icvswy8ganx09v5hfpy9"; depends=[car]; }; 367 + GGPA = derive2 { name="GGPA"; version="1.6.0"; sha256="0spiix8vlncrc2h1chmkfz8k79lpvq3qya33yyg7avf8dqdqaw31"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; 368 + GIGSEA = derive2 { name="GIGSEA"; version="1.12.0"; sha256="1mdxrrfh15784i5yh2hbdan6ppkw4v2p3fax6hxgpb9w4x2w16my"; depends=[locfdr MASS Matrix]; }; 369 + GISPA = derive2 { name="GISPA"; version="1.18.0"; sha256="0v1ijbq6vc2pvchn37bp5pv1al4j2vsgsm2pb0kbsh3nd856zzsq"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; 370 + GLAD = derive2 { name="GLAD"; version="2.58.0"; sha256="0hd7pf46i192w46zwaiphii2vws014dgwddwava6gxjiwk7fc5in"; depends=[aws]; }; 371 + GMRP = derive2 { name="GMRP"; version="1.22.0"; sha256="1iz0nqhgl5r5q2s00mcqqiv21w11cddmc9jip64n6w78n3c4yxqv"; depends=[diagram GenomicRanges plotrix]; }; 372 + GNET2 = derive2 { name="GNET2"; version="1.10.0"; sha256="0h2l232dyvgpsknk3gml7nqm654h0zwzkikhsjwk2awixmdm8nmc"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; 373 + GOSemSim = derive2 { name="GOSemSim"; version="2.20.0"; sha256="15qi69kkgah7g25bymk9q1xf16hp1rd040fglg0svnydylg2d0ab"; depends=[AnnotationDbi GO_db Rcpp]; }; 374 + GOSim = derive2 { name="GOSim"; version="1.32.0"; sha256="1l5cxh2zbf0bkgs6xal2zvxlijxmnrjwjy2ajibxxmk3r210dcq4"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; 375 + GOTHiC = derive2 { name="GOTHiC"; version="1.30.0"; sha256="12hhxcknm4svg5mym6d9d73yxmc5885jm3jl0k243iyp6103z7zy"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; 376 + GOexpress = derive2 { name="GOexpress"; version="1.28.0"; sha256="1mv5bx2m2jhrshdr8p41aixbzi61n20p0nlmdjpcfqp0yz3rjqaw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; 377 + GOfuncR = derive2 { name="GOfuncR"; version="1.14.0"; sha256="08n1d03i4l2dl47axmrziiypi83yffndf0ww1b32skyjm2r0x127"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; 378 + GOpro = derive2 { name="GOpro"; version="1.20.0"; sha256="0k5fc1bfmhf370y6w3wb5jivi7wg2wj8nmmh2g3zhnxvxr9vmpf8"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; 379 + GOstats = derive2 { name="GOstats"; version="2.60.0"; sha256="1f8wqdl0swnvs59i6ljjcaglfqv314n8zxy4crpx806gbjzpn76z"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; 380 + GOsummaries = derive2 { name="GOsummaries"; version="2.30.0"; sha256="1na3mhza11bprki6bxkrabhc0qadprvqs2ca5j00s4f53rwslx75"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; 381 + GPA = derive2 { name="GPA"; version="1.6.0"; sha256="0i60bhc6h64wa701482xrqvzqzzh16mpd8rqhhaym5alyazxlwh9"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; 382 + GRENITS = derive2 { name="GRENITS"; version="1.46.0"; sha256="0yxf9z34234821lcbgz535d2mrs6cls2ds2mm5rz2p1vlgl0h38c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; 383 + GRmetrics = derive2 { name="GRmetrics"; version="1.20.0"; sha256="1ch990zs3gvczfwwwig48hyj6k2n5rkxlc4v5abi1c8cycm19hzm"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; 384 + GRridge = derive2 { name="GRridge"; version="1.18.0"; sha256="1dv0mx8rga92rlpyscfg7pbmx7dfgj9m07dxgqcn7fq4gbif5mmk"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; 385 + GSALightning = derive2 { name="GSALightning"; version="1.22.0"; sha256="1321kkbcdmb1s0hbmj4idqy2sn3slam8knsri37nix10w8f0wd1y"; depends=[data_table Matrix]; }; 386 + GSAR = derive2 { name="GSAR"; version="1.28.0"; sha256="1fc3mph18lfxjnjz2w0jpr4gjxqnp426sml6r235b76gyp5x8wgk"; depends=[igraph]; }; 387 + GSCA = derive2 { name="GSCA"; version="2.24.0"; sha256="15czjsvxsdqirb81ffpkxhlj88z373mzrnbz3kg6f69bls0vlhj9"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; 388 + GSEABase = derive2 { name="GSEABase"; version="1.56.0"; sha256="1i8rryvagxk2pd8nl4a6yldwv82yx869nvv95jf8v00bna08f4d6"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; 389 + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.14.0"; sha256="0k93wkafx5ifjilp8891ba5xd0ja14jvik7yjni1dmljwxb6g494"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; 390 + GSEAlm = derive2 { name="GSEAlm"; version="1.54.0"; sha256="0vvjcmajhc8s9sc13ps31lcyivdi2l12ywj7bs3viix9pibkcckv"; depends=[Biobase]; }; 391 + GSEAmining = derive2 { name="GSEAmining"; version="1.4.0"; sha256="002ddzr5faqlp3505ddccvx34rihx0sqg4bp0zjcb1qfvn33410f"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; 392 + GSRI = derive2 { name="GSRI"; version="2.42.0"; sha256="11g0a9cipm2wlnvppvkfqd7l3bm7jgvd7d9pn65pigrbhx6ginrq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; 393 + GSReg = derive2 { name="GSReg"; version="1.28.0"; sha256="1bkn7vak4dai5sckg0sy39yd092mi7ba8hfm673b54ip2zpj7zng"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; 394 + GSVA = derive2 { name="GSVA"; version="1.42.0"; sha256="1z4qm00dby1jmy5awpr8r08k9vsxjdbzp1wqdjy2w0nc0v85314y"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; 395 + GSgalgoR = derive2 { name="GSgalgoR"; version="1.4.0"; sha256="1lr4c3qy8crba2x093l9ffbb4mj4mh92xz6wil3nrf8djr79x8rh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; 396 + GUIDEseq = derive2 { name="GUIDEseq"; version="1.24.0"; sha256="1fpqgr1yjcb9nygl3fp9i6xn5hwjwqjqbqmwhs6qyxdklrsscxyg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; 397 + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.4.0"; sha256="0xr1ygs4857qa1ck60syvi46wprhm468iavw7flfkn5p6k5q8xry"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; 398 + GWASTools = derive2 { name="GWASTools"; version="1.40.0"; sha256="1cnwnx513kjqdymjlm7qx9293w187xzb0s6z185x12x9pli9b7d9"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; 399 + GWENA = derive2 { name="GWENA"; version="1.4.0"; sha256="1b8g94gkywmhwr5padax7y8l6crzqbnzpqf7d8vyslim7419jy7b"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; 400 + GateFinder = derive2 { name="GateFinder"; version="1.14.0"; sha256="0kvfggjn0jxf6frr7z11xqgv7j3shgqdcjbq6szd9kph2933f3i6"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; 401 + GenVisR = derive2 { name="GenVisR"; version="1.26.0"; sha256="02n40li1fi40qidd9g33swmicrwlr8wgaph9nz4kmzyvdwgdzg3d"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; 402 + GeneAccord = derive2 { name="GeneAccord"; version="1.12.0"; sha256="0yk5v15c6i9g6qbhn158484v8914x6jc4v8wqbxiard932wggip1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; 403 + GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; }; 404 + GeneBreak = derive2 { name="GeneBreak"; version="1.24.0"; sha256="1zr73ayvfjr509a778vzggppd1m35jknkzqk0y4730sk755gx9c3"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; 405 + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.40.0"; sha256="1d35mqp1x4ajniyy7n8qv69nm31f0acy3lh9brwzkibsqd6n0jw5"; depends=[Biobase]; }; 406 + GeneGA = derive2 { name="GeneGA"; version="1.44.0"; sha256="1d0igfgcvwiljsngaq3hmrzp03sgnj8ksrzaf8n2igpg1lz85b3n"; depends=[hash seqinr]; }; 407 + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.20.0"; sha256="0kbzp1fzygvv1wrknp5nb1cw9kxw7pm51m0m0bjcvqzqxn73g6ad"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; 408 + GeneMeta = derive2 { name="GeneMeta"; version="1.66.0"; sha256="0dri85vr0dspzq0px2x2j3y5sn9rvbzk02xk0vnxzpkgqfghg7xv"; depends=[Biobase genefilter]; }; 409 + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.36.0"; sha256="05kanbr69nf8pb5cqcg97r417lr2qzcg0av1n7vz4ds9wlsn5mc1"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; 410 + GeneOverlap = derive2 { name="GeneOverlap"; version="1.30.0"; sha256="18l5dc4xcy1xa2h3sfw92w9rq9v0mnclamjxmzs5fqi469y5mwmm"; depends=[gplots RColorBrewer]; }; 411 + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.50.0"; sha256="0bkhadr61i9jsfwp3i3clz4b0yjdav8rnnrmfplh86sq700y58v5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; 412 + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.38.0"; sha256="1nq6n4bp3ydgpjbsgg3222dd345l5z5yp4mvs4haps6wlc6bin4i"; depends=[Biobase limma MASS]; }; 413 + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; 414 + GeneTonic = derive2 { name="GeneTonic"; version="1.6.0"; sha256="03kv5fnpa6846akxn71aznn9xs65hl5fqpn2fgpnx91q3qwqgvp9"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; 415 + GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; }; 416 + GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; 417 + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.0"; sha256="1r0wblz9w4hqxm15wdssz0invx7hxhg3bnblkia6w3aazh30s6ns"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; 418 + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.30.0"; sha256="1jwksis94mk8bmdggk0w3kvxqwp4di6x78xgsjk6ij54710adyq9"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; 419 + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.18.0"; sha256="1nr504dchiifbagrjq0cck5rzd23dcfnvx6bsw9wikw5mg4gib9l"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; 420 + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.2.0"; sha256="07c3rxvgm2abs01kzczbpy7kmn3yzcdf5z35dlk1bc2ry3s5dsd1"; depends=[Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2]; }; 421 + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.46.1"; sha256="1dm049r7k41m8zzp5b332fw3ah3jpzzgpcb21icxwhlg483ipjyv"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; 422 + GenomicFiles = derive2 { name="GenomicFiles"; version="1.30.0"; sha256="0i5y6dk6z18yqj5k4zy756c6l57z9jq2w5a5dksh2di4qgdgjx3x"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 423 + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; 424 + GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; 425 + GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.0"; sha256="03fdmzcf8h17ksa3byc3k5mxc65pqrbcnw00myz1q53l01p3cnf2"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; 426 + GenomicScores = derive2 { name="GenomicScores"; version="2.6.0"; sha256="18fzi2qi95851ci7qrzwpb7v6fhwp6xi1d1vk11xbygpbvql5mls"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; 427 + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.2.0"; sha256="0nqzrv3871ywd3p3wpgq3yhmbdqcy27582kmms9mnl8xylyhmw0i"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; 428 + GenomicTuples = derive2 { name="GenomicTuples"; version="1.28.0"; sha256="15rv41z4mxj8nn1mkvs73warygd1cmwi9m7lshgld1wf6zk43ypl"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; 429 + GeoDiff = derive2 { name="GeoDiff"; version="1.0.0"; sha256="0ci1x5q8k6rjarciasg72j0ngrv79ya2j8plhgjck41v8g10mbi0"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; 430 + GeomxTools = derive2 { name="GeomxTools"; version="2.0.0"; sha256="0pzad7m77aib9pa0p37sa2wcmlcydy5nvz4xiax11szjc0y4ay7f"; depends=[Biobase BiocGenerics data_table dplyr EnvStats lmerTest NanoStringNCTools outliers readxl reshape2 rjson S4Vectors]; }; 431 + GladiaTOX = derive2 { name="GladiaTOX"; version="1.10.0"; sha256="0cybhqzw403vm0w6wimdjb8k0fvfgig53g83k5v9m3i3wp8vk0pz"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; 432 + Glimma = derive2 { name="Glimma"; version="2.4.0"; sha256="0qkbx9n2vb7kvb5f00csnbffy5bm7hhbdvkx2isgzi0wv0y59kx9"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; 433 + GlobalAncova = derive2 { name="GlobalAncova"; version="4.12.0"; sha256="12r62a67k3p85lcs8mffai3bzrxq52vm3blgvia3by16nids42d0"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; 434 + GmicR = derive2 { name="GmicR"; version="1.8.0"; sha256="18rfbdljfc6hl4p9c66j36j0yg19fp8nhv4gny6f8qa9x3n172sd"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; 435 + GraphAT = derive2 { name="GraphAT"; version="1.66.0"; sha256="07rfgg04qq06mypf8nvaly30jzc58pxw7m19v62hgsjlmyyd3g7g"; depends=[graph MCMCpack]; }; 436 + GraphAlignment = derive2 { name="GraphAlignment"; version="1.58.0"; sha256="0z386wi7rzpc7j6qv98q2rq0a5zm30rryhvir8bi37y7kkgfb45k"; depends=[]; }; 437 + GraphPAC = derive2 { name="GraphPAC"; version="1.36.0"; sha256="19925ha3mr7j399nlwb2vjvsrf7s4xjbq8b6z1k304kxk7d13yp5"; depends=[igraph iPAC RMallow TSP]; }; 438 + GreyListChIP = derive2 { name="GreyListChIP"; version="1.26.0"; sha256="1h7h27q6l9d8j0shklyrh135zrwx56v4zzmm21cj1b7dvmwvpbcv"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; 439 + Guitar = derive2 { name="Guitar"; version="2.10.0"; sha256="082yja4mmsq77sllv3c88agxjbb6jxwil2krb8fkfsijvyyx11c9"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; 440 + Gviz = derive2 { name="Gviz"; version="1.38.0"; sha256="0nqa7m300d7gpsayb6c6rv64d3y8c390wvwgz7v29zs9c025s9a8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; 441 + HDF5Array = derive2 { name="HDF5Array"; version="1.22.0"; sha256="13h6qr4zkynir0ck2aiasjvlid7hrk3m2lzkjyhpvbg1a15r8zi9"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; 442 + HDTD = derive2 { name="HDTD"; version="1.28.0"; sha256="1pd0bbni121b5yq3j3sn8n67xgjfm4zygcpx7zgddcnq250544vl"; depends=[Rcpp RcppArmadillo]; }; 443 + HELP = derive2 { name="HELP"; version="1.52.0"; sha256="17bhh9phny0cw3n61582wywl395ls0ak68y8fqv1ibbqiip193ag"; depends=[Biobase]; }; 444 + HEM = derive2 { name="HEM"; version="1.66.0"; sha256="1jv8fwqsk05g7l7bbl7z928m83gk0gw70pix0dp901j9hm1xqjpb"; depends=[Biobase]; }; 445 + HGC = derive2 { name="HGC"; version="1.2.0"; sha256="0skvfx81xvfi8bwlskq1ylr6c5sblh3qzidbz1nb2xa2m4pck2q0"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; 446 + HIBAG = derive2 { name="HIBAG"; version="1.30.0"; sha256="1czraw6a84kfd8sq72sss67ibb76pj2gnkmhx09jalsqjcy72x3i"; depends=[RcppParallel]; }; 447 + HIPPO = derive2 { name="HIPPO"; version="1.6.0"; sha256="0fr1zhavdzf7rmf0diy4r9qphfcphzbcqcs4370fyd4vyz5bid6l"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; 448 + HIREewas = derive2 { name="HIREewas"; version="1.12.0"; sha256="0bjj5h9vc1fhzcn31hvkpcmnx6gzmz3fhczgy21q0ngp26ny10yd"; depends=[gplots quadprog]; }; 449 + HMMcopy = derive2 { name="HMMcopy"; version="1.36.0"; sha256="0kbvdsvvrrzy05a5qiybc9chjfiidcz5mk09nj9s2x6vsj2whwxi"; depends=[data_table]; }; 450 + HPAStainR = derive2 { name="HPAStainR"; version="1.4.0"; sha256="1k2q2cj8lbcqdqm7rg9kkj786gvp1h91v7k78syxpsl8mmg58msr"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; 451 + HPAanalyze = derive2 { name="HPAanalyze"; version="1.12.0"; sha256="1cm64d8sp2z03s5i6i8a625wr80nw5c1ri7kfrx5jv60379srbz9"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; 452 + HPiP = derive2 { name="HPiP"; version="1.0.0"; sha256="0wfyy4lpv24zad30qngicvrg1yaz9xzx8n48fgcafwps09n8ai25"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr pROC protr PRROC purrr readr stringr tibble tidyr]; }; 453 + HTSFilter = derive2 { name="HTSFilter"; version="1.34.0"; sha256="0jc2yxx0jysd1h2qnn3mv3zfm8bxc96wig6gywlqxy5rbcrm3gm5"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; 454 + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.24.0"; sha256="12q18chk89vvqh02yqx9fg8vfmb5xlk96b1mrhiyx2dfa7z2jj80"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; 455 + HTqPCR = derive2 { name="HTqPCR"; version="1.48.0"; sha256="1d7qj5yv6kzqmdrnp5pd8qv1yr4bg8cs39p8ib0i0k8b4wr97kq3"; depends=[affy Biobase gplots limma RColorBrewer]; }; 456 + Harman = derive2 { name="Harman"; version="1.22.0"; sha256="174fnjd332qahm8m5dyism83zzq3vpz3pmj6k645hpal1w2x5x5z"; depends=[Rcpp]; }; 457 + Harshlight = derive2 { name="Harshlight"; version="1.66.0"; sha256="0a0zxy2f5ff74gaa24mahym2az2azp4k4i4hw8kgj7zj4mj6pzjz"; depends=[affy altcdfenvs Biobase]; }; 458 + Heatplus = derive2 { name="Heatplus"; version="3.2.0"; sha256="0yrnjrbfn8vjzvp2742lyxdqca4s18h73j44qxw7ib95x3p4lndf"; depends=[RColorBrewer]; }; 459 + HelloRanges = derive2 { name="HelloRanges"; version="1.20.0"; sha256="1f9fyafp3spxb76xl8ncww0dzfi4dbzh9ijqzs89dc7m10saq89p"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 460 + Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; }; 461 + HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; 462 + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.2.0"; sha256="0csm0ffbn3ya8fb936dy9g5sbvszsn274wszm871n248s9vqn8k7"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; 463 + HiCcompare = derive2 { name="HiCcompare"; version="1.16.0"; sha256="0g2gsy27prk8b4anywim0qskishc52zh0p3854v04l6jax26675r"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; 464 + HiLDA = derive2 { name="HiLDA"; version="1.8.0"; sha256="02yss2nr6f9zb6kd11id4p3zcgdvr66zlf4s404nh1aag221bc7h"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; 465 + HiTC = derive2 { name="HiTC"; version="1.38.0"; sha256="1ckiwqfq86k8p3y36iwr7k3y6g4z80n8hb047c0i2491lrn23rhx"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; 466 + HilbertCurve = derive2 { name="HilbertCurve"; version="1.24.0"; sha256="1i6fm91y6dza021d5qc8s03x7qmalmm9bkmcj5rflbra5i6fzivz"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; 467 + HilbertVis = derive2 { name="HilbertVis"; version="1.52.0"; sha256="1vwyzxdjngi1firr8kasiam576kwvlx82g1p7j27vlbs1libr9zk"; depends=[lattice]; }; 468 + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.52.0"; sha256="0db7chajaghg6wqawap05ckaadgxvcswzd14i4p6gmfq6j4zpk8g"; depends=[HilbertVis]; }; 469 + HubPub = derive2 { name="HubPub"; version="1.2.0"; sha256="0jjncy9g1cq2n0cf5r7i4sh7sqygvjdm0gpdswhv8s78hdczyq05"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; 470 + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.10.0"; sha256="0v0yshvay7z1dalilx4w1jnswrr96gmsm71srh0j1q91f7ikwds9"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; 471 + HybridMTest = derive2 { name="HybridMTest"; version="1.38.0"; sha256="1p31y61gjii29pllwpyb27ii96ckkd4v78pddnvz9c8fq61bmk6k"; depends=[Biobase fdrtool MASS survival]; }; 472 + IHW = derive2 { name="IHW"; version="1.22.0"; sha256="0vgij5zyaw3fh7arkg4jy1mizsqzbkcsjl05mh3ng2bqh30kyqqx"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; 473 + ILoReg = derive2 { name="ILoReg"; version="1.4.0"; sha256="0pyjaf84nqgf3s6v7lp7xw4451mgb48mwzn1dj7n8cpiwwd85q2l"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; 474 + IMAS = derive2 { name="IMAS"; version="1.18.0"; sha256="101ir2360hycgk7w1ci7f56kdk2f47i31fv97bnlg803qbjc3hkb"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; 475 + IMMAN = derive2 { name="IMMAN"; version="1.14.0"; sha256="1zg4z11v1aw0yscb8p79mh4lpyf8hzph2hdaabrxv9rg0lw1l6pb"; depends=[Biostrings igraph seqinr STRINGdb]; }; 476 + IMPCdata = derive2 { name="IMPCdata"; version="1.30.0"; sha256="0vz9f6zqzprgh2dmlfmbvjian5vkkhbary6vlp59f4v624x63x58"; depends=[rjson]; }; 477 + INDEED = derive2 { name="INDEED"; version="2.8.0"; sha256="1f2i63h4ikdrxyjfzccbhz72195sylqd1766m8b7vz8k4638wbbq"; depends=[devtools glasso igraph visNetwork]; }; 478 + INPower = derive2 { name="INPower"; version="1.30.0"; sha256="1a2ni53b49qiaryyzl4gq7rlkypqrijw3b5ah2l2lcgkjaas6mmj"; depends=[mvtnorm]; }; 479 + INSPEcT = derive2 { name="INSPEcT"; version="1.24.0"; sha256="072kv5k3giyll1clzrg0anqhyl4qbi7cjnmkqz25zdl5bab9l7jk"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 480 + IONiseR = derive2 { name="IONiseR"; version="2.18.0"; sha256="1hdg446z5s616aaalzz49if1wp9nmzm2mbyva82m1vz8i7ih9m4h"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; 481 + IPO = derive2 { name="IPO"; version="1.20.0"; sha256="0cmdz3d5ayjgk4dwdscczxz1zcrfcsq2ajj5rzwhz9jxh8j272c9"; depends=[BiocParallel CAMERA rsm xcms]; }; 482 + IRISFGM = derive2 { name="IRISFGM"; version="1.2.0"; sha256="1yqn4yy7bi6xkywr8pr742a87vxfynwxk67ddld7642dz0mfcb85"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; 483 + IRanges = derive2 { name="IRanges"; version="2.28.0"; sha256="07zs231wbfwwc1c1165rhp711fbss40p9l8kyjjv9flzpr3hr1pg"; depends=[BiocGenerics S4Vectors]; }; 484 + ISAnalytics = derive2 { name="ISAnalytics"; version="1.4.1"; sha256="0pyw5dwglnba0qanxhcpcz7v12vmf2dz0pv7p2n8wav0xqy8x4sm"; depends=[BiocParallel data_table dplyr fs ggplot2 ggrepel lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang stringr tibble tidyr zip]; }; 485 + ISoLDE = derive2 { name="ISoLDE"; version="1.22.0"; sha256="16qfv44341n1l69zh86k445kspaygy0y4by7jms8fhnyiw7pd261"; depends=[]; }; 486 + ITALICS = derive2 { name="ITALICS"; version="2.54.0"; sha256="17d12vcbwmvqfg5bfp5854g2n3c6mg30gdm5cm07k29h1y6q25h7"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; 487 + IVAS = derive2 { name="IVAS"; version="2.14.0"; sha256="02cwi01iamig91hwjsx481l61cxxzrhazxfnw2p1q18ydkc9w6fv"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; 488 + IWTomics = derive2 { name="IWTomics"; version="1.18.0"; sha256="1d9mh2j8al6mzzshsxr1rzqqdqy10rf83yskk2wda37mx1m1i891"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; 489 + Icens = derive2 { name="Icens"; version="1.66.0"; sha256="08jd7g28mazvwd3qbq8y26czmkz45avp4vy8l7i5d6qajwzqzgzs"; depends=[survival]; }; 490 + IdeoViz = derive2 { name="IdeoViz"; version="1.30.0"; sha256="0cclk2pcb2mvsfxhw0zq3qlnfkblb1gqxnn7xypmlf0bm6hcvl4g"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; 491 + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.8.0"; sha256="1c9dl6f6xgmqhkhklx94rlx0gbjy2b5k6cd59cjv25b7h2jdv3yq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; 492 + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.22.0"; sha256="1mdw3rc0p73mwyhdbhmw0pds25qrca8ywld2bi7ws5gh8ivv5lfh"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; 493 + InPAS = derive2 { name="InPAS"; version="2.2.0"; sha256="11hgqbnfny72kv64vp32w90d5dj3d5pn7x9hj0w2qqxnpxzfy8z5"; depends=[AnnotationDbi Biobase BiocParallel Biostrings BSgenome cleanUpdTSeq DBI depmixS4 dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr plyranges preprocessCore purrr readr reshape2 RSQLite S4Vectors]; }; 494 + InTAD = derive2 { name="InTAD"; version="1.14.0"; sha256="1q4880cdmns437l3dvhvc13cvzy1v2ykkxiyn96r8zydd2s0dh6p"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; 495 + Informeasure = derive2 { name="Informeasure"; version="1.4.0"; sha256="0h6990ga4algwgc05092ii46ysj3v5f2ah9lk8wfd17wg6l678dg"; depends=[entropy]; }; 496 + IntEREst = derive2 { name="IntEREst"; version="1.18.0"; sha256="1949smn27d3k10s4cwwri1jaqdp0sqym57m68y6jxkyb2wcbchs8"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; 497 + InterCellar = derive2 { name="InterCellar"; version="2.0.0"; sha256="0ln3gq4gbr91dn8cfx5ykgx5pdqm1y9x8v4v74a261icd4mi1s49"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; 498 + InterMineR = derive2 { name="InterMineR"; version="1.16.0"; sha256="0ab29ppcg0qaxb34gfp7yk0f7z77lfxzz2xjsc2baiymbbv3r0vr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; 499 + InteractionSet = derive2 { name="InteractionSet"; version="1.22.0"; sha256="19m2mpby73zanai68rlqvzx9zccli4dz4kix93acrw9755xp3bsw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; 500 + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.2.0"; sha256="1rmzl0qyz2qm6zjdyjlipa0bp15xb7p25g7wvd2mlxvpn47hf80r"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; 501 + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.16.0"; sha256="18x08rfxvqf1g7haidbzmlg5zd22w8140rhba5jzxpcyx8mcz6h7"; depends=[FGNet igraph knitr]; }; 502 + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.12.0"; sha256="0z2aw2ldar3qq7ddza0k87gksix1j829j76arqyg4w2w0yp9r2q6"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; 503 + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.10.0"; sha256="0mbfm2v8hhmff3yix9znvb6fbjwlgf76bgjyzx000dvpnp7pjrz7"; depends=[IsoCorrectoR readxl tcltk2]; }; 504 + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.30.0"; sha256="0970w1g6na4iwqcyml2b9amx816n05n78ara1qrxvdx6swxw3r8s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; 505 + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.16.0"; sha256="14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; 506 + KBoost = derive2 { name="KBoost"; version="1.2.0"; sha256="1c4l5lwiarm6l6nbqcw85sf16am3x06a1wfsfcm91pchkdl1jx08"; depends=[]; }; 507 + KCsmart = derive2 { name="KCsmart"; version="2.52.0"; sha256="17glg0m4c5k5ridr3k25r4wpwsp1bsl51lgi270sl590rbj2634n"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; 508 + KEGGREST = derive2 { name="KEGGREST"; version="1.34.0"; sha256="1np3i1k7rki9akh70156ggmid52yy0is9q5vd3s45ra7an0ap279"; depends=[Biostrings httr png]; }; 509 + KEGGgraph = derive2 { name="KEGGgraph"; version="1.54.0"; sha256="1qqvbv1sq9j570syb2802ya2ffg1k8f1w986wr6ksqkwxb9qbbm4"; depends=[graph RCurl Rgraphviz XML]; }; 510 + KEGGlincs = derive2 { name="KEGGlincs"; version="1.20.0"; sha256="00dxgb1lg6a38w58dqchma854zg999byb7iil9s5bj5czlycdqsx"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; 511 + KinSwingR = derive2 { name="KinSwingR"; version="1.12.0"; sha256="0cadjv0bymarmn00i5ybv2dssvwhr7q588qwa5fxly58rgppqxbj"; depends=[BiocParallel data_table sqldf]; }; 512 + KnowSeq = derive2 { name="KnowSeq"; version="1.8.0"; sha256="1b69hx47pnxmd8kcrsfcvr3498f1lclgicvvbf0glhllag8202p9"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; 513 + LACE = derive2 { name="LACE"; version="1.6.0"; sha256="01p3paiz4qjyvmphnm157k5ihqs6413gah6y68r3ziirqsccccls"; depends=[data_tree igraph RColorBrewer Rfast SummarizedExperiment]; }; 514 + LBE = derive2 { name="LBE"; version="1.62.0"; sha256="0l2k69n267si9jdkbw7immin93vvs8ilf3vrnmjjd68d28501psf"; depends=[]; }; 515 + LEA = derive2 { name="LEA"; version="3.6.0"; sha256="09hsb17r2iz8iadyja0y7sgrs3nic1dwl3ghfs073i1mbvhqd6hh"; depends=[]; }; 516 + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.20.0"; sha256="1nbb29mn4jybv15xkw9fkjz19rm3ydqiyvq8mf85v078ry701bkr"; depends=[CAMERA xcms]; }; 517 + LOLA = derive2 { name="LOLA"; version="1.24.0"; sha256="09cnh0qlwk7pf4r6pnv3dlyxr2fq95ah3zq0n04inlm424i2s87d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; 518 + LPE = derive2 { name="LPE"; version="1.68.0"; sha256="0in97g7yj7s871f5vmvc2racrcmd60dnvdmdx9wnkcymxlpvvk0h"; depends=[]; }; 519 + LPEadj = derive2 { name="LPEadj"; version="1.54.0"; sha256="05dy18bcjg50w05xmm8j3585wm5s97jyyvgz6a7v6y8qw14z8j86"; depends=[LPE]; }; 520 + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.4.0"; sha256="13vzh4ma1msl8xn5m12w7wsppjsaq0a5xhbij27xg5h6wdwn4p8s"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; 521 + LRcell = derive2 { name="LRcell"; version="1.2.0"; sha256="1793a94jvlpfn6dnvc1q1kprxv6gr41q3mf424ggg2hkkqx3b14w"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; 522 + LedPred = derive2 { name="LedPred"; version="1.28.0"; sha256="0kwj4qavxx34s5xhhx8w7rhx8lni46ynf45bjryz1v6x3hcw7kvw"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; 523 + LineagePulse = derive2 { name="LineagePulse"; version="1.14.0"; sha256="0ycmzxf5pm0c36924kggn02rhx5fi4345xf569y4zq4pyb9lzc4c"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; 524 + LinkHD = derive2 { name="LinkHD"; version="1.8.0"; sha256="006633y3h5702b92z9i6yj4agvwirmbvm48zqcgkn71gm21ln1bd"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; 525 + Linnorm = derive2 { name="Linnorm"; version="2.18.0"; sha256="1bdnglznsfs1kdscqyjv595wiy09khcv9kxm4fmbnmksisqjz5qj"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; 526 + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.48.0"; sha256="006z8jiw7xcsmv95na4rd4y5n6s3j5gb2jvs3k1b1vl85jw656zf"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; 527 + LoomExperiment = derive2 { name="LoomExperiment"; version="1.12.0"; sha256="1ry960v987q0zk57z1jxgj0gnvlcd05hg75dvgi4hg9m0j4wmx4v"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; 528 + LowMACA = derive2 { name="LowMACA"; version="1.24.0"; sha256="08pn7ah79lxk24j7x8d3ngj50mfb6bfngqj72ahs0vibypxbdhnj"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; 529 + LymphoSeq = derive2 { name="LymphoSeq"; version="1.22.0"; sha256="0nkbl7g6ssrrqfkd7hbb42x4kr3av9c739pbhi3mlvd6zbxxd6ka"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; 530 + M3C = derive2 { name="M3C"; version="1.16.0"; sha256="0jsql5wd58hs5mnn9wq5b4kl3z57y6amykirfb3k047zpyi8ijnh"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; 531 + M3Drop = derive2 { name="M3Drop"; version="1.20.0"; sha256="1r86q4gwv6haqb4z6b7a37cgkxm0a7byyv7630ag0kv27hq749xq"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; 532 + MACPET = derive2 { name="MACPET"; version="1.14.0"; sha256="087x5qk3s0s0wk0rvd88b4b03fhj8c12hvin97y2xqikh8bsjwjb"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; 533 + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.8.0"; sha256="1zhs1jjnzfrbhln5cyb6mr4mns6ad9dzrkr0miwknqbvzbyq2i8z"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; 534 + MACSr = derive2 { name="MACSr"; version="1.2.0"; sha256="0b1h233bz7yqcnjgr71lgsj8cj4r41icxsblizd4l071w8md4qrr"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; 535 + MADSEQ = derive2 { name="MADSEQ"; version="1.20.0"; sha256="1h0a9r05nvk6gymak8cxfx8i6x2k9ra5d60ndj08b2x3kqkn1gvg"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; 536 + MAGAR = derive2 { name="MAGAR"; version="1.2.0"; sha256="1dpa58arfcfq6knjs85crp3cpj2hfhvhsl7cv0bfpljavq2i43wp"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; 537 + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.14.0"; sha256="118nn59b5dc9aq953x1sx4yy4hjagy1pnx5ga888avrg91gwlrsl"; depends=[Biobase clusterProfiler enrichplot ggplot2 ggrepel gridExtra reshape2]; }; 538 + MAI = derive2 { name="MAI"; version="1.0.0"; sha256="14mwfjx8b3miykbs26h5ha1yj2hdsxlakslvra31vkbx2m3mf8ia"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; 539 + MAIT = derive2 { name="MAIT"; version="1.28.0"; sha256="0f343lsn90lg8l0774js479rg5zl0kq5lyicy3n3bgjf1wwlvalx"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; 540 + MANOR = derive2 { name="MANOR"; version="1.66.0"; sha256="12bsca5qzpmh4784ml4nvhsp65q5aipsajwqkb2ak42kz6k662p3"; depends=[GLAD]; }; 541 + MAST = derive2 { name="MAST"; version="1.20.0"; sha256="14h6giny9lhzqjsx3h7gdhsm8wfwnvp5zsl4avrflip0jmsn45yy"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; 542 + MBASED = derive2 { name="MBASED"; version="1.28.0"; sha256="11rbsaki3nbzil2p8fv7b7biykb60398ayq8sc8drqpiam15myy7"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; 543 + MBAmethyl = derive2 { name="MBAmethyl"; version="1.28.0"; sha256="1jkvx523spv55qrikg26xc2r9qb72y7kfa161ha6jjm8l57rb6bv"; depends=[]; }; 544 + MBCB = derive2 { name="MBCB"; version="1.48.0"; sha256="06idlf8s0a59q45rckflxi5m3i7rgn8lphzyw2fgajvv4df5j7q3"; depends=[preprocessCore tcltk2]; }; 545 + MBQN = derive2 { name="MBQN"; version="2.5.0"; sha256="01pf9wkk3dsxgx1y8mxfxn9m2j2hqipc5kajm7w8g60bj9flg09j"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; 546 + MBttest = derive2 { name="MBttest"; version="1.22.0"; sha256="115bkavx4pqy7sh70m5jmghk784f4cqm6z91z5s44m8c00a58vnp"; depends=[gplots gtools]; }; 547 + MCbiclust = derive2 { name="MCbiclust"; version="1.18.0"; sha256="1sswmmdkxw41pzqzqxs8rq581jx1wprcmafagnn4n39h2mw00wwy"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; 548 + MDTS = derive2 { name="MDTS"; version="1.14.0"; sha256="124ixdshragwgnr4rz5qii2j0j74ybm5h8y3k2h1kba56632ff1s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; 549 + MEAL = derive2 { name="MEAL"; version="1.24.0"; sha256="10v5xncsfanisk74x4nqgyraypckxznb5pzaaa92nlxakly80qgj"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; 550 + MEAT = derive2 { name="MEAT"; version="1.6.0"; sha256="161pdgsnwa9xj1s67d0k65pf3af8mzl0h6p9xsjksfs1f717yw32"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; 551 + MEB = derive2 { name="MEB"; version="1.8.0"; sha256="13cxv0m4kcfrjs63lv9a29pjmi45ywvah3k62xq6y123pczpkv4b"; depends=[e1071 SummarizedExperiment]; }; 552 + MEDIPS = derive2 { name="MEDIPS"; version="1.46.0"; sha256="0rkrx75qvldlc12m0ijky513ka6p82zlcpany604di3k4gdvvazp"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; 553 + MEDME = derive2 { name="MEDME"; version="1.54.0"; sha256="1av3wijvx7m5m9ickpxxwljanxand8sga00lkkjwyci55jnrvzsi"; depends=[Biostrings drc MASS]; }; 554 + MEIGOR = derive2 { name="MEIGOR"; version="1.28.0"; sha256="18046q1nnvfb2ins248jkz651smz74cib1yzak4fgd05wxl5vl1y"; depends=[CNORode deSolve Rsolnp snowfall]; }; 555 + MGFM = derive2 { name="MGFM"; version="1.28.0"; sha256="0ihq2faqnja4p138rwljh3wv56swjbad6wljry6siawsfnkc1jb7"; depends=[annotate AnnotationDbi]; }; 556 + MGFR = derive2 { name="MGFR"; version="1.20.0"; sha256="17acf2qfp6qk1n2q5bc5drrl0d876w6zpv7j7k6vhwq801yfka45"; depends=[annotate biomaRt]; }; 557 + MIGSA = derive2 { name="MIGSA"; version="1.18.0"; sha256="13ilzr39pbq9slh5rf30hmsvppbqkdqim420wdasgg8psysjh2hf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; 558 + MIMOSA = derive2 { name="MIMOSA"; version="1.32.0"; sha256="0c9wn8xp6n96nfjcgy7f5i9hx5gg3qhiclnswzpv9z4vyc1qy887"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; 559 + MIRA = derive2 { name="MIRA"; version="1.16.0"; sha256="0qxfpj1qqn1f9skiz392s2f96nvzc75a7axy0zzbbpds5cxmy11d"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; 560 + MLInterfaces = derive2 { name="MLInterfaces"; version="1.74.0"; sha256="1nzy04fqwzb0ywiafgx3m3i2n1b0g4pcg8mlgh8yz5d3mmna4kag"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; 561 + MLP = derive2 { name="MLP"; version="1.42.0"; sha256="0giccwv7cw2cigcnpxv0bn5c3jca58032rl8yjkja8vv6gdgin3h"; depends=[AnnotationDbi gplots]; }; 562 + MLSeq = derive2 { name="MLSeq"; version="2.12.0"; sha256="0z722cbbvkkfpzli47n9dhyj3n02gibffy1l06imwvzxcvahcfyj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; 563 + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.8.0"; sha256="1fl8dmbxr407f0vzv4q3jpaia28igzqxjb6azbck7zgn64wh5i3c"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; 564 + MMDiff2 = derive2 { name="MMDiff2"; version="1.22.0"; sha256="1a74q87mlf1pvgy47gyncllsdz460iyk1nrh4m75jywhbxjf36z0"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; 565 + MMUPHin = derive2 { name="MMUPHin"; version="1.8.0"; sha256="00gi53nm19q1282lk435mvm908ldslfcqs70fbz69ysxp6a4qv9v"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; 566 + MODA = derive2 { name="MODA"; version="1.20.0"; sha256="00v40gsp1x5gbjg4ilnsjq1j512lwl3sbhqmavyxs20i8c8xjcqf"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; 567 + MOFA2 = derive2 { name="MOFA2"; version="1.4.0"; sha256="0vl2ffvh9nsdgw94yavkdkkhihpcb8fdbn3f19aygmwbfg78j3w9"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; 568 + MOGAMUN = derive2 { name="MOGAMUN"; version="1.4.0"; sha256="0jq863ql6ydykrbriw5h6ibinchkhsgxq8908gyg5f5jl2sgc8pc"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; 569 + MOMA = derive2 { name="MOMA"; version="1.6.0"; sha256="1i7rngcclrwc4vmdywlz9yjmy37q0k898mcy8whnwx61lw4n3s8b"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; 570 + MOSim = derive2 { name="MOSim"; version="1.8.0"; sha256="1mzyz45q3wcry18icardmjlrqzp1fjd8j614lrmz6as9c20jw8a1"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; 571 + MPFE = derive2 { name="MPFE"; version="1.30.0"; sha256="0v7s8ncji6cz8ffvyqyb6qkkrckncahig7p6ijvn917imsd3ac6j"; depends=[]; }; 572 + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.12.0"; sha256="1iyczhmfd2wygnb3rmpy10v7w0l2whbs7cwg9axdd7s6gc8dkzfi"; depends=[BiocParallel progress SummarizedExperiment]; }; 573 + MQmetrics = derive2 { name="MQmetrics"; version="1.2.0"; sha256="0d1mphilf3ibpql5i1nxb46kd64ks331wp4kbsdyfrqnlb8wfgfz"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel ggridges gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; 574 + MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; 575 + MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; }; 576 + MSPrep = derive2 { name="MSPrep"; version="1.4.0"; sha256="0nkmmjzkdxizk2yv1ahgsp8zsr4jjazpzqqwcsx86dhrgf5jk5cz"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; 577 + MSnID = derive2 { name="MSnID"; version="1.28.0"; sha256="0dks5h3vp9ly8x24px2rl5blqicxybpxjnxvg2p1bwq8zvjkm38p"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; 578 + MSnbase = derive2 { name="MSnbase"; version="2.20.0"; sha256="1r5igzb7xb5qcw37ffy0c3j6vlg9zffmksrc57rs1pmfnca773z5"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; 579 + MSstats = derive2 { name="MSstats"; version="4.2.0"; sha256="1i36a0vhqb2sjllyh6ascfm5fbzf8awazbk1vjq5n8mh2cq72ri9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; 580 + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; }; 581 + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; 582 + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; 583 + MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.0"; sha256="0sizx0001gh609fpi5ivq1pa49sprasbsh39kplcybcidq20qcj7"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; 584 + MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; 585 + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; 586 + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; 587 + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.2.0"; sha256="0bx96v57lhr8mmvy30cpmbr3mc4ykqwjvqld5gvc01f0h79x8545"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; 574 588 MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; }; 575 - MVCClass = derive2 { name="MVCClass"; version="1.66.0"; sha256="1di7y10mr7caacd6igwxnr62cm4v1x877yi4a2i5jqz1058jqni7"; depends=[]; }; 576 - MWASTools = derive2 { name="MWASTools"; version="1.16.0"; sha256="1sj3z91ahqmw1ph0rpd7bh6chcqwy2c5zy64blhn9p227l8446vg"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; 577 - Maaslin2 = derive2 { name="Maaslin2"; version="1.6.0"; sha256="1fc0ch1pdnsq7mbc64l7c4a9mfia4ad3qgd868g34736vfvh8hqg"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lmerTest logging lpsymphony MASS metagenomeSeq MuMIn optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; 578 - MantelCorr = derive2 { name="MantelCorr"; version="1.62.0"; sha256="1l5hr5c1dq5xxpndr0xknw29hn32qh94b20f2nwbvyj2pqkrsl2v"; depends=[]; }; 579 - MassArray = derive2 { name="MassArray"; version="1.44.0"; sha256="13fvd4q5wg523hfzf2329256sw9z4cdvfr8priph1jbr3rxy99ym"; depends=[]; }; 580 - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.58.0"; sha256="1cs32sig1yvqn9xs0cvhfpmkh2lbllx7aab80sz58x03wnx8v60z"; depends=[waveslim]; }; 581 - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.4.3"; sha256="1yir3rwhz5vf0pdn3fpvlc57c75k98gvv8gapajbvymz3lyghijv"; depends=[matrixStats]; }; 582 - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.0.0"; sha256="1yn7jrkq2ill7hwv6432a5yv4xcr3fyj4hqsw0a4g7y2iqnp0sif"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; 583 - MatrixRider = derive2 { name="MatrixRider"; version="1.24.0"; sha256="0w7iiz3spps0dzdbf5xacwlbcwhgdxcjris7g0gffkzz7ij5ck27"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; 584 - MeSHDbi = derive2 { name="MeSHDbi"; version="1.28.0"; sha256="1aw7s3sr89w1sxj4wrnzj0hiigzk1arg0vq3790gnqrsy7sgips5"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; 585 - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.64.0"; sha256="1irdsjf3aj8i0ip9ciiv6wwq6j2lqfjsbz22r7qhjihy3ll2xj5x"; depends=[]; }; 586 - Melissa = derive2 { name="Melissa"; version="1.8.0"; sha256="1j80nkhpnm16blpzw3m7x15hk119k9zdday8rypskqc246i4jljy"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; 587 - Mergeomics = derive2 { name="Mergeomics"; version="1.20.0"; sha256="0iycnnjd1xsc9gygi9fa0nfpx8y9803x6pjwckfb0n4ssxg0mj6n"; depends=[]; }; 588 - MesKit = derive2 { name="MesKit"; version="1.2.0"; sha256="14rzsfr33dn8zvvys75fxzsrk962y30j4ka5rmyrc1p7ck4wv8cw"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; 589 - MetCirc = derive2 { name="MetCirc"; version="1.22.0"; sha256="0dv9w449578hsjspgppwv02gvmvyg58q37vlbkss7awny0vafs9v"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; 590 - MetID = derive2 { name="MetID"; version="1.10.0"; sha256="1hg0awdkg65g0gp4cfyr8i4afhqf9w4sc8bl28im7b1h7wrrrjvx"; depends=[ChemmineR devtools igraph Matrix stringr]; }; 591 - MetNet = derive2 { name="MetNet"; version="1.10.0"; sha256="0svhn9lv9rr29wyywznsfk4mnqn90h162hkf8zrq8cz3h25pr2k9"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 Hmisc mpmi parmigene ppcor rlang S4Vectors sna stabs SummarizedExperiment tibble tidyr]; }; 592 - MetaCyto = derive2 { name="MetaCyto"; version="1.14.0"; sha256="00kprxq4n691ng26yaygps4fkakaq9jfi9gkypl62xij6y4h1ws1"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; 593 - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.12.0"; sha256="0gqlvnq7vdsggss93zbi95l8xgl47hhhlw7v4ygvb2p91b8id23k"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; 594 - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.6.0"; sha256="0xdlg7r1prjp1qvvl01ga2sn4r6br5h8zaigyyiq5xc3v5nm85cb"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; 595 - Metab = derive2 { name="Metab"; version="1.26.0"; sha256="01w9zw7g0yyky7n449pirah8aid0dqkp2vkzh087324qd8k3wifd"; depends=[pander svDialogs xcms]; }; 596 - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.0.0"; sha256="1i09mhlx9vld7akcc0bbipqbjk6clzza1szr5hgpn3iwda2c06qw"; depends=[stringr]; }; 597 - MetaboSignal = derive2 { name="MetaboSignal"; version="1.22.0"; sha256="0d9wfg1ip5pldm8ywh4djgjp9m3xc9m7m1wrxyi3j8zfrcsg9b13"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; 598 - MethCP = derive2 { name="MethCP"; version="1.6.0"; sha256="17mncz62pncq4zx524iib61nwyw3gw97mqbnn46zq9s4q100qada"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; 599 - MethPed = derive2 { name="MethPed"; version="1.20.0"; sha256="177hmyb0r8yqlihhh8g2haaia29qwxqynj20ckmkbpixs3v37qql"; depends=[Biobase randomForest]; }; 600 - MethReg = derive2 { name="MethReg"; version="1.2.1"; sha256="0q6blwrxyykd1zz83vhsr7yij8c8qf654wrgg3vkliyl8l2j0zss"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; 601 - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.24.0"; sha256="02ii6ibjlwp4kf2xqlsrqvcq52anc5nwnf0y6nldf150grjinpwh"; depends=[Biostrings gplots seqinr stringr]; }; 602 - MethylAid = derive2 { name="MethylAid"; version="1.26.0"; sha256="0b6k79dv4n009jrzisqd7fq9mkr9r79krgnp8q7nmk88vq1fz4hv"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; 603 - MethylMix = derive2 { name="MethylMix"; version="2.22.0"; sha256="0aw3jhmwsv8kk650kiwqsyb0agz07fi1kbp06wk3drd06gkswpwk"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; 604 - MethylSeekR = derive2 { name="MethylSeekR"; version="1.32.0"; sha256="0niybbcpny381qwip47i12dhp6zz4x4ayzwj3rvn4lsg63yqn9ml"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; 605 - Mfuzz = derive2 { name="Mfuzz"; version="2.52.0"; sha256="0njjln3w5nqrpi5ml2v16dhn7d3mr0nglbsy0grnxcld7z8h34yb"; depends=[Biobase e1071 tkWidgets]; }; 606 - MiChip = derive2 { name="MiChip"; version="1.46.0"; sha256="10i7bq9qcwvhy7mh47zk9105837p68zd7cidl9pss6l6h03rszfm"; depends=[Biobase]; }; 607 - MiPP = derive2 { name="MiPP"; version="1.64.0"; sha256="0g8vlbcwy7djfpgg3483hw65a6g472z7h329vqsrfk782i4wzglr"; depends=[Biobase e1071 MASS]; }; 608 - MiRaGE = derive2 { name="MiRaGE"; version="1.34.0"; sha256="19y8kyirm0pzvv6p3dsnn9zws189anw5a2h2aiivgh6y6jis8g57"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; 609 - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.4.4"; sha256="0r8z2vjj32zblzhk2dyx2na3z35fzxf3lgrnb97vz4l5navgmghp"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; 610 - MineICA = derive2 { name="MineICA"; version="1.32.0"; sha256="1cpy8fpfff0k0s4qxmis6351nk1v507a2jszg3hhw3aacbpm7gqp"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; 611 - MinimumDistance = derive2 { name="MinimumDistance"; version="1.36.0"; sha256="0jp2icr0z56d3phickr3dhgkmiapfl7z93mipzc7ll139m3ayzj8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; 612 - ModCon = derive2 { name="ModCon"; version="1.0.0"; sha256="1qd1545w6jgpd4xnqwbhv10yzn70lc3hslqr56gg30mc7p8qbkh8"; depends=[data_table]; }; 613 - Modstrings = derive2 { name="Modstrings"; version="1.8.0"; sha256="1n8zhzh6zzamac2ss7wd2plbl1xcl0n8pvarljn6irai5cpigfl4"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; 614 - MoonlightR = derive2 { name="MoonlightR"; version="1.18.0"; sha256="1mx97ym3l351gzfb12z4dmp7mc6wc4cqisbr9f10hnk7x303cbax"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; 615 - MotifDb = derive2 { name="MotifDb"; version="1.34.0"; sha256="04cmgg5mw1cqbg95zyfc2imykmdxyff16w26rq97xghcxwiq2b3z"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; 616 - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.0.0"; sha256="0wa1dzymkpjrh12p4d1vaw1rfy1rnm8hl18gb1q5qmw3c1qaniqn"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; 617 - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.0.0"; sha256="1d3x433js5ppypc312124g7i5h6mx94axlq8h8acqvgdd3pd4yqx"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; 618 - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.4.0"; sha256="13g8a726vsyjs6m1kd42vf8avdnmhykxhl6z3j2njzkp2jg17pd8"; depends=[clue MASS Rcpp S4Vectors]; }; 619 - MsFeatures = derive2 { name="MsFeatures"; version="1.0.0"; sha256="0i5xdhii7ls72xb5nkjimdka77rb7m3arz5z0ndc6kflhr6b0cbn"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; 620 - Mulcom = derive2 { name="Mulcom"; version="1.42.0"; sha256="0law2r7hf22jm8029s8yw1b03dmh3grpnjsp7gkavrmp5355rm9m"; depends=[Biobase fields]; }; 621 - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.18.0"; sha256="0l0arf3q1f6zy6pdgsy3h5n523sg1hlilv7lj7snr5814idgdj51"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; 622 - MultiBaC = derive2 { name="MultiBaC"; version="1.2.0"; sha256="0c6vah8396vklwk8sqg3rapifaz0f527w5jw2ddpz2nmmnigy2b8"; depends=[ggplot2 Matrix MultiAssayExperiment ropls]; }; 623 - MultiDataSet = derive2 { name="MultiDataSet"; version="1.20.2"; sha256="06wcncz10jm54g0m9yk2314lg8x666p5r4zhi57sp2p50cj1lvnz"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; 624 - MultiMed = derive2 { name="MultiMed"; version="2.14.0"; sha256="1s23gf8vvi76k4z7qvw3zvfjqs0w5rg3lijfs8b4z23nphadv4gg"; depends=[]; }; 625 - MungeSumstats = derive2 { name="MungeSumstats"; version="1.0.1"; sha256="1l9j0b3j6n4fi5c657h958kz88fzlcq5r7vfx9xhpy5y9di319k7"; depends=[Biostrings BSgenome data_table GenomicRanges]; }; 626 - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.2.0"; sha256="0433i4xbz8hrfaj8fxgzps3x8dqrl5vgwzg7qmp4cy5sb1lw5wvs"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr S4Vectors stringr tibble tidyr VariantAnnotation]; }; 627 - NADfinder = derive2 { name="NADfinder"; version="1.16.0"; sha256="19ikqix98ag7nqjjnhhrnsi89g4k3cxcqw3cwph91p1pcg3h5w3p"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; 628 - NBAMSeq = derive2 { name="NBAMSeq"; version="1.8.0"; sha256="05cqdrp5b7mad625ab43pdv5dkpgxd0q8g0r201066g0nrhzpxqg"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; 629 - NBSplice = derive2 { name="NBSplice"; version="1.10.0"; sha256="1qspsqmvyv5nw3f0zzp2vffy82ld9lbix2wp6cci99m4jvvwdp14"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; 630 - NCIgraph = derive2 { name="NCIgraph"; version="1.40.0"; sha256="0w517l2v6aqn9m2malmv482ydjw94sblrzwzfqfsh2lbyaxhbz8c"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; 631 - NOISeq = derive2 { name="NOISeq"; version="2.36.0"; sha256="18d51dv2ygsm7kkwal341f1wrwrazyns0045j00vld367kic8jiz"; depends=[Biobase Matrix]; }; 632 - NPARC = derive2 { name="NPARC"; version="1.4.0"; sha256="0s4mwv7pcxn79vivhysmyvg3vvqaf6snij1rsvj97lfrpn25zh9y"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; 633 - NTW = derive2 { name="NTW"; version="1.42.0"; sha256="0q9kkrxn7bp9a5phhrg266cybxqbj5gqlbri9w9r91c91r95dxxg"; depends=[mvtnorm]; }; 634 - NanoMethViz = derive2 { name="NanoMethViz"; version="1.2.0"; sha256="0gqis6n9wsxp127yvdfwm355iq7zfww1p0p3x1idhy75hmi08zpy"; depends=[AnnotationDbi assertthat bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggthemes glue patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; 635 - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.22.0"; sha256="0qafspf90ydxrpm7rniyqwcz64lk91yxjdmq6ilnkxdixdmcnkvs"; depends=[Biobase matrixStats Rcpp]; }; 636 - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.0.0"; sha256="1j0mnlhcklp9bmgd63b2nafnbglivdrjf9l1f3nfaagl4g3dkqll"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; 637 - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.24.0"; sha256="0snkhb3krgl82ymbjqjbhavi38ipffvbrwr9w7j5qqlw0hhsa2dg"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; 638 - Nebulosa = derive2 { name="Nebulosa"; version="1.2.0"; sha256="1l0hyb6gam83bmbjsx4zdvrwv434j4qnm1a9n91m6zqip0zaxmxc"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; 639 - NeighborNet = derive2 { name="NeighborNet"; version="1.10.0"; sha256="12d7drs7i66wbw75xsbmgada9p7zx6v4k7m8pym6ha4h52f22yd3"; depends=[graph]; }; 640 - NetPathMiner = derive2 { name="NetPathMiner"; version="1.28.0"; sha256="17537qyh6bj82marikc2sfd79xkgfvh53y44raafjk2xxv1sbsc8"; depends=[igraph]; }; 641 - NetSAM = derive2 { name="NetSAM"; version="1.32.0"; sha256="1am52sa4v6b7zng03a403g66775n5sn1gcgfjk7s1q808n1bivaq"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; 642 - NewWave = derive2 { name="NewWave"; version="1.2.0"; sha256="1f7n8lmkdwdr2pb9fgma9lvqn47bawnzr841gaaxyy1ww38dw512"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; 643 - NoRCE = derive2 { name="NoRCE"; version="1.4.0"; sha256="049vn903knz8fj6vbmlyvmxv5gi2v4v6ppv6w9xvi2gy6rpv32v4"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; 644 - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.10.0"; sha256="06dcssa9cmcj5wgbhi2p30cva8g5n623b1qab5vfxh7vkyz8g6xj"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; 645 - NormqPCR = derive2 { name="NormqPCR"; version="1.38.0"; sha256="0sni1dghasdk9ankfi613fl71iiy3kzr51f9nclvvnc3vz4mg3hk"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; 646 - NuPoP = derive2 { name="NuPoP"; version="2.0.0"; sha256="1hmqan1c88b0q150w3nlh7l1wgvfxdgdv8m1bxwcn4a9bvjhqsdy"; depends=[]; }; 647 - OCplus = derive2 { name="OCplus"; version="1.66.0"; sha256="06j9caaajvxj21m11pigm3lkd0s0adzaxpbv4v24im7nfvk0cv1g"; depends=[akima multtest]; }; 648 - OLIN = derive2 { name="OLIN"; version="1.70.0"; sha256="090frrifpzygswdk2g11x0klhxb2w6hprlc4qmv3l40fvv7fb5aa"; depends=[limma locfit marray]; }; 649 - OLINgui = derive2 { name="OLINgui"; version="1.66.0"; sha256="14bm1kcbssh4i1kwbd4qdkyspdq7bbar30xcb7a4826fx03j07hv"; depends=[marray OLIN tkWidgets widgetTools]; }; 650 - OMICsPCA = derive2 { name="OMICsPCA"; version="1.10.0"; sha256="1r26pj3rlk211581ddyfga1ghja11x4jy60kdwqzl74gnrjh8nvb"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; 651 - OPWeight = derive2 { name="OPWeight"; version="1.14.0"; sha256="1d3bp3l77335idc3yd9dz1zadby05w46bws835ga7vc824rd08p5"; depends=[MASS qvalue tibble]; }; 652 - ORFhunteR = derive2 { name="ORFhunteR"; version="1.0.0"; sha256="0y4xpzma0lz8qaqr538spwahyis753l6nvdqm4cmynvahkxdqxdj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; 653 - ORFik = derive2 { name="ORFik"; version="1.12.13"; sha256="0bg6bxrjj8y8464k5238h3rp2cqld6gxhcgc698bip483wl9kbbx"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; 654 - OSAT = derive2 { name="OSAT"; version="1.40.0"; sha256="1carfhb447z696mxb48b99mqr1lh7zr3gkyq7myajbxjym6a51kf"; depends=[]; }; 655 - OTUbase = derive2 { name="OTUbase"; version="1.42.0"; sha256="1yg376iab78blb8qv4d5hq2mb7va4ir3vp8jrl7a8dqcqvgjm8w0"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; 656 - OUTRIDER = derive2 { name="OUTRIDER"; version="1.10.0"; sha256="1vvc2w9c31z67khy85i1r8jjhpbkb0vcxwax2lr84rp314b09021"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; 657 - OVESEG = derive2 { name="OVESEG"; version="1.8.0"; sha256="0v7279ycirsmv0arqqjb1rn5wxcmxmd35dncxxxsfgn734z4vm8l"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; 658 - OmaDB = derive2 { name="OmaDB"; version="2.8.0"; sha256="0h7df541pr46ayc2gvv3c49lhmgksimghid71qw5xxn122zgp8sa"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; 659 - OmicCircos = derive2 { name="OmicCircos"; version="1.30.0"; sha256="1agdy155nk7a4v53whw1fvljsb8gnhvypgjd5w43c41dshhhpc6w"; depends=[GenomicRanges]; }; 660 - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.8.0"; sha256="1fj7jrczn9rjriw3dbnmsh25bzh7ng9pi8rcdy664xwkm8n840gc"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; 661 - Omixer = derive2 { name="Omixer"; version="1.2.4"; sha256="1bkyr50nq6vjp2xpyi1915xa93y1ih54m1p2dsjvcnjvd52zfngp"; depends=[dplyr forcats ggplot2 gridExtra magrittr RColorBrewer readr stringr tibble tidyselect]; }; 662 - OmnipathR = derive2 { name="OmnipathR"; version="3.0.4"; sha256="0rbq3h3cp5dgpy5ifmbnfm6z8w4jv45wjzyl1f4qacgrbyf2l30a"; depends=[checkmate curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; 663 - OncoScore = derive2 { name="OncoScore"; version="1.20.0"; sha256="1765pvqikvckgzajjsa5f0y5fiwyvi3syxafawl765bph83n9f99"; depends=[biomaRt]; }; 664 - OncoSimulR = derive2 { name="OncoSimulR"; version="3.0.0"; sha256="1nsyqs4ai6nrsydi8cw7cxalf7pjzfdafdqx6ga91gyfbj4pv55k"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; 665 - OpenStats = derive2 { name="OpenStats"; version="1.4.0"; sha256="0yl1bsbjfaghp06zslainr2j0lzzlcm8s173qfw1xmmg6lql9l9i"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; 666 - OrderedList = derive2 { name="OrderedList"; version="1.64.0"; sha256="1x0py5fsxwgmzwjwl0xgkkqrly8fkjb44syb7nn6nwpba3hglllv"; depends=[Biobase twilight]; }; 667 - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.20.0"; sha256="1md15zvr0bli38kb42c319f1b29iwnl5la3zhyim6yab5vrwa1sp"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; 668 - OrganismDbi = derive2 { name="OrganismDbi"; version="1.34.0"; sha256="0p8ccpdchdwci4kv9y07wdadzgms8nipvg6rm1rll35jcflnnkxi"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; 669 - Oscope = derive2 { name="Oscope"; version="1.22.0"; sha256="0h70k69dicimrkxirx0lfnipd9l965ngx2xxswwx1nlgdwbfhhij"; depends=[BiocParallel cluster EBSeq testthat]; }; 670 - PAA = derive2 { name="PAA"; version="1.26.0"; sha256="1cbfwn48c45rrhay94zxyqhf4vcz0z1xcww0fbl6dm90nfvb95d1"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; 671 - PADOG = derive2 { name="PADOG"; version="1.34.0"; sha256="1wz3vhqc3v4a08bi7f2z82rncpvfagknhsibrpd88nb7h44nzs1k"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; 672 - PAIRADISE = derive2 { name="PAIRADISE"; version="1.8.0"; sha256="1l45ir8zgf0xmmbz1bmqlpawz60dq4s9h8c0c4vnzf338vfbvhdy"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; 673 - PANR = derive2 { name="PANR"; version="1.38.0"; sha256="05w82fdzqr0p54cmqy0plyav87di4dc2gkwpnvvxz774z69ms03b"; depends=[igraph MASS pvclust RedeR]; }; 674 - PAST = derive2 { name="PAST"; version="1.8.0"; sha256="0qswxk7dwmchc0drd4yk7k1034w2yb79mycpnsp15np7dfffkk41"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; 675 - PCAN = derive2 { name="PCAN"; version="1.20.0"; sha256="1yszrk7qcvs9nrk0mqwsjxchpny7xjpq8gh606a41lvf94aznfsr"; depends=[BiocParallel]; }; 676 - PCAtools = derive2 { name="PCAtools"; version="2.4.0"; sha256="11idi9fwvyhkakbm63qxcdhkany8gbskis04z0p5a39lppq8ks31"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; 677 - PDATK = derive2 { name="PDATK"; version="1.0.2"; sha256="03dwa6yndshv0wvvvnvn0g84xygx7hs487kcx0gajrsrmlrd8rxq"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; 678 - PECA = derive2 { name="PECA"; version="1.28.0"; sha256="0sgf934xyyb368x9a0wl17dq3hfcdiz2sk3j0j89a4l56lviaip8"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; 679 - PERFect = derive2 { name="PERFect"; version="1.6.0"; sha256="01jdyl4n50izhr89rvyvp25b11hcm9x3ap2qddbrhk019csp8zax"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; 680 - PFP = derive2 { name="PFP"; version="1.0.0"; sha256="120vbhincw2kzcark6i47pnkyzhniv5pr2qq29x3nmap8k9yh121"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; 681 - PICS = derive2 { name="PICS"; version="2.36.0"; sha256="0w86s998515icvr7xk3dr2kgnsima4lgwh2gi5g6zp5c3g1lmhjp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; 682 - PING = derive2 { name="PING"; version="2.36.0"; sha256="1ncrm9f8xjv7fs6dq81i8zd40d4wlkaah18g2s1x98wpkzrz93hr"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; 683 - PLPE = derive2 { name="PLPE"; version="1.52.0"; sha256="1gwjlrfpav1x5lbhkni6qjinafsf6rdr2c820smld7iqlms404fr"; depends=[Biobase LPE MASS]; }; 684 - POMA = derive2 { name="POMA"; version="1.2.0"; sha256="1qqg1ijivjfyr0bjmjq43m7yngllcla2z0kf4jx08jk8h6jwkhbn"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; 685 - POWSC = derive2 { name="POWSC"; version="1.0.0"; sha256="043nad76fd97wx4hlspj5i2a18h2ycy1cvxzhg1lnyihnzqbbnd9"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; 686 - PPInfer = derive2 { name="PPInfer"; version="1.18.0"; sha256="008f1k4z1kp2w82ck21knrgg4jam6s0ff3ia8zzfjcx9cq3gi0f7"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; 687 - PREDA = derive2 { name="PREDA"; version="1.38.0"; sha256="1yv3x68icjyzkxws1k4d0858089anm226vapl5mgi61s4czakl5d"; depends=[annotate Biobase lokern multtest]; }; 688 - PROMISE = derive2 { name="PROMISE"; version="1.44.0"; sha256="06108wmzic9nfl0wk3jkrzvkikmsk3mpahy9563h29868a3ainw4"; depends=[Biobase GSEABase]; }; 689 - PROPER = derive2 { name="PROPER"; version="1.24.0"; sha256="14d7m27plrj2v1w807gx7i0r1m90nj87xz43yvlrlazljg1lriw7"; depends=[edgeR]; }; 690 - PROPS = derive2 { name="PROPS"; version="1.14.0"; sha256="0nmgnb1ckf31avm007qkkhmlirahki6gp7gvlsjygpmf8yc7y8lq"; depends=[Biobase bnlearn reshape2 sva]; }; 691 - PROcess = derive2 { name="PROcess"; version="1.68.0"; sha256="1rcnryml9ab1lbxgs282q1mavs6jj8wqjb97zqc8hnjh02w0g8yd"; depends=[Icens]; }; 692 - PSEA = derive2 { name="PSEA"; version="1.26.0"; sha256="0nz8i0d7z2bdy216dkp0zsyid0r6lssj751sq2h0fk7xvj97ablc"; depends=[Biobase MASS]; }; 693 - PSICQUIC = derive2 { name="PSICQUIC"; version="1.30.0"; sha256="1gsh4sjs5k1kzwnywc3vxagvgwb6qzadgrcj4xszdd7pk06vd8dj"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; 694 - PWMEnrich = derive2 { name="PWMEnrich"; version="4.28.1"; sha256="137yxm3i0kpl05lldp8d57vmhyj664pxc2cimdqdy4v5n8asw764"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; 695 - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.20.0"; sha256="02gqy5d4m23ac8djy6ximbk383721470finyw8gc8ndjb7ppq73i"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; 696 - Path2PPI = derive2 { name="Path2PPI"; version="1.22.0"; sha256="1klxm9y73amcan6lr2vhjg5iia3jqai2vb9kg43rl4b7yd746wlg"; depends=[igraph]; }; 697 - PathNet = derive2 { name="PathNet"; version="1.32.0"; sha256="05qqcpr51bc8hz4073760pwm1742mfixm2dlpk56xa0b589l7clc"; depends=[]; }; 698 - PathoStat = derive2 { name="PathoStat"; version="1.18.0"; sha256="1zg3vwnxnsm0fmhiskg7zmfmfs100n56g1cv6lrz2dgf3860119c"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; 699 - PeacoQC = derive2 { name="PeacoQC"; version="1.2.0"; sha256="0l065ij2fh6qqhlfpr6cqv9pqlrjamppfrv7gbdkj5z1sh75np6b"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; 700 - PepsNMR = derive2 { name="PepsNMR"; version="1.10.1"; sha256="0amx3fdxn1b1n3j37hgj9lpnxffvk6mlqn9k9kjhf1qsbhafx2m7"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; 701 - PhIPData = derive2 { name="PhIPData"; version="1.0.0"; sha256="0ly3wqqiiizsfdcsb5jcd1pzh9b5mb5241qq7rz3pqrsgncxrax9"; depends=[BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; 702 - PharmacoGx = derive2 { name="PharmacoGx"; version="2.4.0"; sha256="1krvfadlzari9icyqr1y8zjhf9wpa0a6pavqjfwz3i7878wj35g7"; depends=[Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader ggplot2 glue jsonlite magicaxis MultiAssayExperiment RColorBrewer reshape2 S4Vectors SummarizedExperiment]; }; 703 - PhenStat = derive2 { name="PhenStat"; version="2.28.0"; sha256="056w1n6q0j0w7lnny4s87picxcbx2wzbpdmq88crgbg4z4mpfl2p"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; 704 - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.0.0"; sha256="01zxscbmb4cj576avzkc7s7kmsr9f9m3wx7hp32bns8d5jlsaxji"; depends=[doParallel dplyr foreach igraph Matrix]; }; 705 - PhosR = derive2 { name="PhosR"; version="1.2.0"; sha256="1fravmg690is1lqp2afzg22ywycx0p2sqp6hw97s51phyw5f82vn"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; 706 - PhyloProfile = derive2 { name="PhyloProfile"; version="1.6.6"; sha256="0jabsrjzlgw38mm0qmwfa7zygpl9fir3gyn0r75dyvrbz7z3psc2"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 zoo]; }; 707 - Pi = derive2 { name="Pi"; version="2.4.0"; sha256="1k0i2jw216k6vbjda4d500whzhdagssci1030ywh5d9fg6z9zm37"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; 708 - Pigengene = derive2 { name="Pigengene"; version="1.18.10"; sha256="1khkx7p11k11bays33zbv34mppgp02yxhhsg48kjvq9zg7rqq52a"; depends=[BiocStyle bnlearn C50 dplyr gdata GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; 709 - PloGO2 = derive2 { name="PloGO2"; version="1.4.0"; sha256="13ilmsy24j3p9f3addz1i9fwscra47rgq4j7ndz46d1h2rd3rdvy"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; 710 - PoDCall = derive2 { name="PoDCall"; version="1.0.0"; sha256="1sblbxwpqvznm51addm0rrbzimybqb9amawg53v94802cmk5c6jd"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; 711 - PoTRA = derive2 { name="PoTRA"; version="1.8.2"; sha256="1wxirc82xn634xzp3z9h4g3hnn6l8x81ayvhhrwplja2fc5kbh7a"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; 712 - PrInCE = derive2 { name="PrInCE"; version="1.8.0"; sha256="13lfs9afsxafakx8p0vikqrna478c5wxsc7k97xjjafyf2x6msx1"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; 713 - PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.8.0"; sha256="1s6ynsnk2y671k522ffsg2qy4rc62jax7krdd465iasj3wsz4h11"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; 714 - Prostar = derive2 { name="Prostar"; version="1.24.8"; sha256="0ixan77d9spvi5s6sy3lf0rpsl0v8j8rn16mcm7r35c26sy3yd2j"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; 715 - ProtGenerics = derive2 { name="ProtGenerics"; version="1.24.0"; sha256="1c79k8nc28782w5gxi7pkm8jmddq1hdw6khs9kgsp8dyk60ak6fq"; depends=[]; }; 716 - ProteoMM = derive2 { name="ProteoMM"; version="1.10.0"; sha256="009gqr9nr8blx8lcaypwqjcvg1p1r03mbmb7dy4jzgk63gzix881"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; 717 - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.22.0"; sha256="1lfxrivdqiq6q95g4l7sly1qrlsykafcv7nsr8y8bxmw3xj1v3jv"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; 718 - PubScore = derive2 { name="PubScore"; version="1.4.0"; sha256="0cgghhkvk6jngvflsvqzwy2ri34y26cazppsps13zbd4hjv1x223"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; 719 - PureCN = derive2 { name="PureCN"; version="1.22.2"; sha256="0bmp2j1p10hvx9gkq8wyxha006d793499g53g662yj8skb7cgz2v"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; 720 - Pviz = derive2 { name="Pviz"; version="1.26.0"; sha256="04r9ybr3qw1pa6jh36jvxjydbf96i2ff9x9nzwwvzinz9wzcf9ic"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; 721 - QDNAseq = derive2 { name="QDNAseq"; version="1.28.0"; sha256="1p4544xlarkbgs9kybrrawq3v7qr6ix62nrc6l7dcksh2ka69yzf"; depends=[Biobase CGHbase CGHcall DNAcopy future future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; 722 - QFeatures = derive2 { name="QFeatures"; version="1.2.0"; sha256="198drsqhlkmzxlqg1n3nirqn5m83vb99ygi36whkaxdgjwzgp3gn"; depends=[AnnotationFilter Biobase BiocGenerics IRanges lazyeval MsCoreUtils MultiAssayExperiment ProtGenerics S4Vectors SummarizedExperiment]; }; 723 - QSutils = derive2 { name="QSutils"; version="1.10.0"; sha256="01mn21gaprdgsl6m3n96p2f2n069p0dzfyf8bqc46dkq6r0qr1br"; depends=[ape BiocGenerics Biostrings psych]; }; 724 - QUBIC = derive2 { name="QUBIC"; version="1.20.1"; sha256="113rhjcr8f3yqfcii013n23d6m9wjr3gajcn304n5mv9h4qikb8p"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; 725 - Qtlizer = derive2 { name="Qtlizer"; version="1.6.0"; sha256="196bq4vscpi9hzpplg0wdzb421s56zlw1b30fcjm71v1krpcri0k"; depends=[curl GenomicRanges httr stringi]; }; 726 - QuartPAC = derive2 { name="QuartPAC"; version="1.24.0"; sha256="1d21cdmy594k6bznlrgfy4ykaxvjamp7nmsphdv1k4ga36qbwncz"; depends=[data_table GraphPAC iPAC SpacePAC]; }; 727 - QuasR = derive2 { name="QuasR"; version="1.32.0"; sha256="1635ff11ahzjrh3cdcxrq5bgd100n444k7mc0maz0jx21vj8qqb1"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; 728 - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.26.0"; sha256="1pj58n86niqsjxcfyc10gc6w72a9i9lah3ry8427w2r1n3846qi8"; depends=[dplyr Rcpp yaml]; }; 729 - R3CPET = derive2 { name="R3CPET"; version="1.24.0"; sha256="1b08k07iypsik6rr1lcp3hhmxghiwbghh08jrhnwhn9z1hpm6j0z"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; 730 - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.42.0"; sha256="0rnh6bnfmc83v8fx0wdc5zppj8nbr1j773i8w33kcrd7q8gdwwvg"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; 731 - R4RNA = derive2 { name="R4RNA"; version="1.20.0"; sha256="1ablfqmppwm2ixivmchfwgii7073fs9wv9k1rjj6h1xyim4assiy"; depends=[Biostrings]; }; 732 - RBGL = derive2 { name="RBGL"; version="1.68.0"; sha256="0l40ibf8g5s4ay83s92l198jjqc5l09hcmxqcjrpifvp5pjf9yy5"; depends=[BH graph]; }; 733 - RBM = derive2 { name="RBM"; version="1.24.0"; sha256="15ybv04kn0d8w61sdbahk1j0vn9m567xwjs2kisiw0by82idgmn0"; depends=[limma marray]; }; 734 - RBioinf = derive2 { name="RBioinf"; version="1.52.0"; sha256="1jckqnmhpyj5idlyynxxhz51fp84ahx7rxvh1mzpdnian6myr6g1"; depends=[graph]; }; 735 - RCAS = derive2 { name="RCAS"; version="1.18.0"; sha256="0l92v870ndna8zjqwzf22fb9vyhkh6942v4gaiqr1yc4qr521p5p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; 736 - RCASPAR = derive2 { name="RCASPAR"; version="1.38.0"; sha256="08qg3rjxwkfznwr22rhixxz4b2l910fp5gykq1v11j3nipjjnnbk"; depends=[]; }; 737 - RCM = derive2 { name="RCM"; version="1.8.0"; sha256="0cpqc6jqy1vb4bgj6j7dsglj2qm1bfk2hx0dbkpmcq61y9xy4pb0"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; 738 - RCSL = derive2 { name="RCSL"; version="1.0.0"; sha256="0bjn0yx2g70k6v1lhsaj7r3acljdr9jyf0x33irdmw23lpsrqgff"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; 739 - RCy3 = derive2 { name="RCy3"; version="2.12.4"; sha256="1k5r9vi5gh6bhpcykd7x6kmnvixkx6r2fxn6h5w65snb2dnd1p9w"; depends=[base64enc base64url BiocGenerics dplR glue graph httr igraph IRkernel R_utils RColorBrewer RCurl RJSONIO uchardet XML]; }; 740 - RCyjs = derive2 { name="RCyjs"; version="2.14.0"; sha256="1bni672lz8ijflslf9v9cps635iiiz5qfkq3lyw1kg90k6wh7691"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; 741 - RDRToolbox = derive2 { name="RDRToolbox"; version="1.42.0"; sha256="14rrp3dlnvk4sn024vab5cwf5nzqrcbyabg7yc6al2769f6rlpdv"; depends=[MASS rgl]; }; 742 - REBET = derive2 { name="REBET"; version="1.10.0"; sha256="121n2fian9wvc45zfm5k8kj05h6w4mrmpb77sm0hl24nwgr94l0q"; depends=[ASSET]; }; 743 - REDseq = derive2 { name="REDseq"; version="1.38.0"; sha256="14d832py7ky0rwzi5ydpivyyy4k670v5yn3inhgj1qr8k9amdymr"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; 744 - REMP = derive2 { name="REMP"; version="1.16.0"; sha256="1zj8fvk5gb27rss1kbk7hc7chz9hwcpkp88d9a4l98qi77fi0aan"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; 745 - RGMQL = derive2 { name="RGMQL"; version="1.12.4"; sha256="03c9ws9g44hcr1171xah6cyb987mlmv3qwkyryi53ahxyqik48lv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; 746 - RGSEA = derive2 { name="RGSEA"; version="1.26.0"; sha256="09g4jg9gcjl8ynhbcj3hw3v96f1vkid9w5yb45h60q7s5fsdqr08"; depends=[BiocGenerics]; }; 747 - RGalaxy = derive2 { name="RGalaxy"; version="1.36.0"; sha256="124zzyarkdb2bragf5z0514xl0awk0j63db6c2jxw67sbzdvksp3"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; 748 - RGraph2js = derive2 { name="RGraph2js"; version="1.20.0"; sha256="1h0jbzc6ch9pp0d24779dsimwy2qh24widkl038jbrz85pja331q"; depends=[digest graph rjson whisker]; }; 749 - RIPAT = derive2 { name="RIPAT"; version="1.2.0"; sha256="11w04m99mr60wkv7rmlsyr5yvwnkklpzqcfg0pv9gg4a7rpcjqx9"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; 750 - RITAN = derive2 { name="RITAN"; version="1.16.0"; sha256="030wpc4afvfdlryylxyrlv1d44hsrzrnx9v49dhs4rygq284522z"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; 751 - RIVER = derive2 { name="RIVER"; version="1.16.0"; sha256="1y92wrch7012ycv12kranc7znchgxydl4rpchkaazvhqwk13297j"; depends=[Biobase ggplot2 glmnet pROC]; }; 752 - RImmPort = derive2 { name="RImmPort"; version="1.20.0"; sha256="0b8arhs6h7jfcp4sdwskvabniarlbsjwjqkrrwppa8w28k3vax41"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; 753 - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.16.0"; sha256="0zpgfbr4i03gy7hnzgjp2i2nv0lq94a7dx4jlyk0idhf0rnk2jz7"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; 754 - RLMM = derive2 { name="RLMM"; version="1.54.0"; sha256="0q184j0fpx0sp9zi71j6j9k3ycc1r6df46qi3wbnlb1m8aqzvyj9"; depends=[MASS]; }; 755 - RLassoCox = derive2 { name="RLassoCox"; version="1.0.0"; sha256="105dap39j4r1xqy1kwhc2b8ifcml26rhrz5h97596wpav9ynmwxx"; depends=[glmnet igraph Matrix survival]; }; 756 - RMassBank = derive2 { name="RMassBank"; version="3.2.0"; sha256="0mgr15b7kx5i2ia33g8r62pfw03d33g7qz4r40dkhpgr3sbvyv67"; depends=[assertthat Biobase digest enviPat httr MSnbase mzR rcdk Rcpp rjson S4Vectors XML yaml]; }; 757 - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.4.0"; sha256="150dslxydc9vnyfvhnxqq441v54ml236vi67mj06xysfg8zil1kd"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; 758 - RNASeqPower = derive2 { name="RNASeqPower"; version="1.32.0"; sha256="17kxz7jrsip837q4fxwcnd85ak7l05mvl16m02zbimi95pbwvm0a"; depends=[]; }; 759 - RNASeqR = derive2 { name="RNASeqR"; version="1.10.0"; sha256="0md7p08h2d15gf9kk9yz0zc46ya6z5d9bw2dpmaqnxvx42xlc5xp"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; 760 - RNAdecay = derive2 { name="RNAdecay"; version="1.12.0"; sha256="0aqja2q2xfszxfabvi0nby6k383xxvfcdfh4x0y7x3i3wcrzh70r"; depends=[ggplot2 gplots nloptr scales TMB]; }; 761 - RNAinteract = derive2 { name="RNAinteract"; version="1.40.0"; sha256="0r1ciy7gszwd1nw3s1mvwsml26vymkzzk17bg59vi0fiqh0dblfr"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; 762 - RNAmodR = derive2 { name="RNAmodR"; version="1.6.0"; sha256="1vdrqhr6lii3gcbgqclhnrqqzzzpdm42psr6swdk536k0a1ax4zk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; 763 - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.6.0"; sha256="0mqk2zqnzbj0l563jsmq76lbvk1662m142zz31514x30bxz6z9nn"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; 764 - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.6.0"; sha256="10c3hzy6yxr23hgaidn3qslv7fgzfvq7wacw9ax97c3hi5n9gnbx"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; 765 - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.6.0"; sha256="15k29lp8qzx9n7q9xpacwza9zrdljicagi24v9r6s1vdrfgbq1rf"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; 766 - RNAsense = derive2 { name="RNAsense"; version="1.6.0"; sha256="0470g4d2sp9qbzcqsk5w5z0wsqmd7cgdpwksvl8rwy6kdizlblms"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; 767 - ROC = derive2 { name="ROC"; version="1.68.1"; sha256="1rmsrvn6hrg9ay7xfb05mfkxknnig78p3kbk9ghsd11lhx2fjm3s"; depends=[knitr]; }; 768 - ROCpAI = derive2 { name="ROCpAI"; version="1.4.0"; sha256="1634c5vwjiflcs0djnml3l0p45fi8rwigm5p81nad7cql21vvawc"; depends=[boot fission knitr SummarizedExperiment]; }; 769 - ROSeq = derive2 { name="ROSeq"; version="1.4.0"; sha256="1vdy26rs25hvym3y7dvyd9ld4zc91zqwky60461acy58g8nmh0wd"; depends=[edgeR limma pbmcapply]; }; 770 - ROTS = derive2 { name="ROTS"; version="1.20.0"; sha256="18wyi73l95df182vg3m014sxwdbpggr61vsbazhyw4vyx2fnzmpl"; depends=[Biobase Rcpp]; }; 771 - ROntoTools = derive2 { name="ROntoTools"; version="2.20.0"; sha256="03anqp8mbcnjhf6sg5jkc31mdxwifvhbqh8hvkj3xzmyvfbf6vz3"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; 772 - RPA = derive2 { name="RPA"; version="1.48.0"; sha256="0hdnaqv1iivq365nnbcw1hsampql8icldnrar725jbivpqsv1bj4"; depends=[affy BiocGenerics phyloseq]; }; 773 - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.4.0"; sha256="1hyds97ay4mn7nl830yh9v8mlasgsljsx5wsrhz2zsmbbyx6wbnb"; depends=[]; }; 774 - RRHO = derive2 { name="RRHO"; version="1.32.0"; sha256="1bim6db375jb8ibf4ccqdjh5kir0av77qwvn3jxp7l14hpbmv3c8"; depends=[VennDiagram]; }; 775 - RSVSim = derive2 { name="RSVSim"; version="1.32.0"; sha256="1kasdg8z3yr9n89rd9bcycnv43yg5b46nflksgciif6xd4shmcrb"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; 776 - RSeqAn = derive2 { name="RSeqAn"; version="1.12.0"; sha256="10z541vymjqfddi5bhiws44smvrqcxqn5ns7s4rqif3h2n4n1chx"; depends=[Rcpp]; }; 777 - RTCA = derive2 { name="RTCA"; version="1.44.0"; sha256="1ivsz36zw89yjrs34bk5wk8nag2ckaxahrvplh56kw6948vq0d9k"; depends=[Biobase gtools RColorBrewer]; }; 778 - RTCGA = derive2 { name="RTCGA"; version="1.22.0"; sha256="0rw6d1lcsaf7ia492qyj024sdi9qw3hn7pa44f9vw21npbr4jsaf"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; 779 - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.22.1"; sha256="0lggavnzq9ypz0ka1a3qwfw9d8jm5g2bw9njg56ag95daklb1zdv"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; 780 - RTN = derive2 { name="RTN"; version="2.16.0"; sha256="1p7qwhs1rk0s3am67h9akm4p19sqm9ndjr5jp1zc434wqm7ihfdm"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; 781 - RTNduals = derive2 { name="RTNduals"; version="1.16.0"; sha256="01jzqfzqfj49yl8ylikgcpg6pw2r8s69bmyxgx8bmw2mh4vwyvww"; depends=[RTN]; }; 782 - RTNsurvival = derive2 { name="RTNsurvival"; version="1.16.0"; sha256="16jjik6si86p8c8q11fvq0h6swflbslayify3cydj6g37mwlnri6"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; 783 - RTopper = derive2 { name="RTopper"; version="1.38.0"; sha256="1jizdgcni1zm4akvl50s76szk0701b3z1ry78sjj8501jc806bcy"; depends=[Biobase limma multtest]; }; 784 - RUVSeq = derive2 { name="RUVSeq"; version="1.26.0"; sha256="1fy0k1p0m209lzjpd5jhfnifa22lrn63qq3a3kn5g0xhbbmijzac"; depends=[Biobase EDASeq edgeR MASS]; }; 785 - RUVcorr = derive2 { name="RUVcorr"; version="1.24.0"; sha256="1dr0kczj3lvv193yh0vp2hqv0b846g9kq0qhr054k58yfp3dplip"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; 786 - RUVnormalize = derive2 { name="RUVnormalize"; version="1.26.0"; sha256="0gajn59j0i11j5gxa5nd4srq8ki2355j0xk1x8k15cr7sdrrd12l"; depends=[Biobase RUVnormalizeData]; }; 787 - RVS = derive2 { name="RVS"; version="1.14.0"; sha256="1690agl8jx5fc7x1n9ffiszsbg2nlz0m9gh400hdkrw74dhv9l5l"; depends=[GENLIB gRain kinship2 snpStats]; }; 788 - RadioGx = derive2 { name="RadioGx"; version="1.2.0"; sha256="1vv76lhsrk037pgvnb2a1817lh58vnbcl4ka6zrxmaailjb8khs1"; depends=[assertthat Biobase BiocParallel caTools CoreGx downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; 789 - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.16.0"; sha256="0k8hnyx7yvn9cnmv9fp66a5ph1yv8a732dk3yaxwp8gdlz1mps6n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; 790 - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.12.0"; sha256="01gssx570rdsfncyb23v9fgq3yqsicw8mak7jpx8n1scjpszqdmp"; depends=[dnet igraph Matrix]; }; 791 - RankProd = derive2 { name="RankProd"; version="3.18.0"; sha256="0wgs5b2a8i5bcj9vr4pcqzm52rkh453kr736i0qww1si7drj2s1r"; depends=[gmp Rmpfr]; }; 792 - RareVariantVis = derive2 { name="RareVariantVis"; version="2.20.0"; sha256="1v0mpjwgqxgqa90x9h5lfmpllfch1fzqim360h6l3a2ycnvnvpyj"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; 793 - RbcBook1 = derive2 { name="RbcBook1"; version="1.60.0"; sha256="1f6pss18l0l4m43f3nfx21nnyr8h6wi1f4wv4197hjdhi4wzs2la"; depends=[Biobase graph rpart]; }; 794 - Rbec = derive2 { name="Rbec"; version="1.0.0"; sha256="08990zfzkz4awi0ysc9gvp8pbc6pbc9bidgfidjqm574fqgm968v"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; 795 - Rbowtie = derive2 { name="Rbowtie"; version="1.32.0"; sha256="0mfikbrs28q7r3lnsq0jma5x6nkrnm3q46242jh35w9c969jk5yy"; depends=[]; }; 796 - Rbowtie2 = derive2 { name="Rbowtie2"; version="1.14.0"; sha256="0r5yqjal48xlcv5cidi7p3zwygvsllmv2zzkwkc9kfq083l2i4ih"; depends=[]; }; 797 - Rcade = derive2 { name="Rcade"; version="1.34.0"; sha256="0llg1v8y1waw4mg62k6sgg0q5yckf4f0spyrzlf2l69vm685ksfl"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; 798 - RcisTarget = derive2 { name="RcisTarget"; version="1.12.0"; sha256="1yh0l11vnslgr6zsbpgc8mc4aa32zy34f5yrz98hkcdl53iw5y7f"; depends=[arrow AUCell BiocGenerics data_table dplyr feather GenomeInfoDb GenomicRanges GSEABase R_utils SummarizedExperiment tibble]; }; 799 - Rcpi = derive2 { name="Rcpi"; version="1.28.0"; sha256="0c5b30w9kam86848iqffz7kv50qxacpljcwsf7slj9yrnyrh0jxq"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; 800 - Rcwl = derive2 { name="Rcwl"; version="1.8.1"; sha256="185lra9lrvw5yhvda68gcsk7j3rhdillxjx7gy5v9a9g2hmbh3sv"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; 801 - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.8.0"; sha256="1lx0d5k3bdvxmb06lcqfzasz623nc3jagkfx2kq2s0x7ld50rafa"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; 802 - Rdisop = derive2 { name="Rdisop"; version="1.52.0"; sha256="0v3pq5hpgfprchjjnn6xqbgy49bw4dfhhs0ni78savhxk1k7m7ic"; depends=[Rcpp]; }; 803 - ReQON = derive2 { name="ReQON"; version="1.38.0"; sha256="1z13avbxwvvhh03arjfnaipznynifsi8k2hzw4kappz24f7lwmza"; depends=[rJava Rsamtools seqbias]; }; 804 - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.0.0"; sha256="1n27g9bkjhqik66v7y28yrqxm2ccjw92r9afp64n7ph6qk6qkjq6"; depends=[data_table doParallel foreach httr jsonlite magick]; }; 805 - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.6.1"; sha256="0gbc86vpvcx9jrpnrwapm1n38f8w8a309qdq78kghl45az8shfd8"; depends=[ggplot2 gplots httr jsonlite progress RColorBrewer]; }; 806 - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.0.0"; sha256="19vgz9kxnvf959hpxwmgv0s6g52qg7aa4glsn40s17mrsbmprgvg"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; 807 - ReactomePA = derive2 { name="ReactomePA"; version="1.36.0"; sha256="1293z89ai766c559axgr7mz5x4564gyl9xqzf6s8s0aj1xb35gqf"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; 808 - ReadqPCR = derive2 { name="ReadqPCR"; version="1.38.0"; sha256="0a5paks4q210h3261p59mc19pbwq3znkn7mirsvcpv9y6ha7jfzj"; depends=[Biobase]; }; 809 - RedeR = derive2 { name="RedeR"; version="1.40.5"; sha256="1jamcdh70f0mq99ydlxry080r0jsxh798b8bpij1r4jq5px94wbp"; depends=[igraph]; }; 810 - RefPlus = derive2 { name="RefPlus"; version="1.62.0"; sha256="0j9xia747rhbxz7vx20cvb3bsqpz6y4q1mh7m9nas0x3dfrzcci9"; depends=[affy affyPLM Biobase preprocessCore]; }; 811 - RegEnrich = derive2 { name="RegEnrich"; version="1.2.0"; sha256="1n6sgvbmbknp20i732w5xv2a882ri1xli7h3n4wcsl95614aszl5"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; 812 - RepViz = derive2 { name="RepViz"; version="1.8.0"; sha256="0jpa9h59q1rjqxx4g6gsk4v33zf9k2xb1cggp4hpgyy7n9cqph0h"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; 813 - Repitools = derive2 { name="Repitools"; version="1.38.0"; sha256="0l3aqchy0d680jpaz6nws2k3byh2pxqxnb94gvax3703pm73jr3l"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; 814 - ReportingTools = derive2 { name="ReportingTools"; version="2.32.1"; sha256="0wq9y649dh1am6djzz0xlz42428xsgw2bdx1dknhdw2xbydmmx47"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; 815 - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.2.0"; sha256="0p7va19aw0j6anx7ck879kbi5cn7dy712h5ia94adr38ssismv1v"; depends=[DelayedArray Matrix S4Vectors]; }; 816 - Rfastp = derive2 { name="Rfastp"; version="1.2.0"; sha256="1hq6wpxfildizr4wjlyfdsjr65394yvsv7a31iwwhj0icbhcdbfw"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; 817 - Rgin = derive2 { name="Rgin"; version="1.12.0"; sha256="1bx47nk84h2yh1npijl7agp36ky8ad4fcdk8w5j49z4x2mj1pzb0"; depends=[RcppEigen]; }; 818 - Rgraphviz = derive2 { name="Rgraphviz"; version="2.36.0"; sha256="0d0xq1vgr4b165cn4wg7zmfjyc1d9ir4amgs196j4cgrhpmrnl8s"; depends=[graph]; }; 819 - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.14.2"; sha256="1cwynbcaaxmbh45fc0d264liqdj0wbjlj7k2bsq3qfjbnh6kkam5"; depends=[]; }; 820 - Rhisat2 = derive2 { name="Rhisat2"; version="1.8.0"; sha256="1hqahh5h22mj2crqp6r9xnm111xmfgk39c100rcaziqrpdy5npk8"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; 821 - Rhtslib = derive2 { name="Rhtslib"; version="1.24.0"; sha256="0acpgv98529ic2i2k03knz05akb6h51wbz7sr5zgi8gk4nmawrlf"; depends=[zlibbioc]; }; 822 - RiboDiPA = derive2 { name="RiboDiPA"; version="1.0.0"; sha256="1zxav8j5ja6dswlhq70pyjqy3xsd5ra2n4sksi2m97xdydy0iq5q"; depends=[BiocFileCache data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; 823 - RiboProfiling = derive2 { name="RiboProfiling"; version="1.22.0"; sha256="1jmd8yrv7p7hn4gdibg3svmhqxjyrnfp7cgsqg8zv862lgd75zsl"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; 824 - Ringo = derive2 { name="Ringo"; version="1.56.0"; sha256="1ysivh14xxfs51mdq4sdddhfdas96cdqhsj9bzy10ys9myxf3q2x"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; 825 - Risa = derive2 { name="Risa"; version="1.34.0"; sha256="17122fhcb40ib3i2yg6rpjz9qy893nsdmm10gdm86ivlnmf53ng7"; depends=[affy Biobase biocViews Rcpp xcms]; }; 826 - Rmagpie = derive2 { name="Rmagpie"; version="1.48.0"; sha256="14fgyhfivr4biy5hf3jz1fnq25m6qgvv68lmlzqs8099d2z0jx6i"; depends=[Biobase e1071 kernlab pamr]; }; 827 - RmiR = derive2 { name="RmiR"; version="1.48.0"; sha256="128f8zddhfzq1wljvrinlnyy0phxygg2v3razb2fflm0fdn1gx2x"; depends=[DBI RmiR_Hs_miRNA]; }; 828 - Rmmquant = derive2 { name="Rmmquant"; version="1.10.0"; sha256="13lxqgrrk8cdbrxlj4hbvvw6vx2y0d9yb4w8qnihmwlckzf7ra3b"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 829 - RnBeads = derive2 { name="RnBeads"; version="2.10.0"; sha256="07x41v0zs6fsayc8y2xvw3zyj97lqnhn18a58wjc045qiqbjc3ah"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; 830 - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.2.0"; sha256="0593nz2brigsamj3wi6wbqi424d7awl9pgdna8n9srwpz44j30l9"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; 831 - Rnits = derive2 { name="Rnits"; version="1.26.0"; sha256="15svapaz8nvbip34n9q4ywh21vpzhxpy8shjbjxgiyz9bf1mpfsp"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; 832 - RpsiXML = derive2 { name="RpsiXML"; version="2.34.0"; sha256="12qaa6inbqgabyi3whm0jqvyhb5kbdyh6k8rc2y0irpiv7j85i8f"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; 833 - Rqc = derive2 { name="Rqc"; version="1.26.0"; sha256="02hwj2vd003x0zf273ndnwh7kxy6wc3sz14d3kryp2w2aqjj826f"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; 834 - Rsamtools = derive2 { name="Rsamtools"; version="2.8.0"; sha256="0arhh5bbx3pmxmkh5sjgczcswqy83d35r7cjhd2knpczdvrixaq5"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; 835 - Rsubread = derive2 { name="Rsubread"; version="2.6.4"; sha256="043m4512q73x6q529hqfgrap0fq5anvny4va085nafia06b805pi"; depends=[Matrix]; }; 836 - Rtpca = derive2 { name="Rtpca"; version="1.2.0"; sha256="0z8q7iyk3f38sn928fan96lwy2xkhx5bzhq184sbn8v3hadhhxyd"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; 837 - Rtreemix = derive2 { name="Rtreemix"; version="1.54.0"; sha256="0rkvkdwyivlvx32azmfwfv1pg1c879mil3h9wz7pwlmxg5ick3yi"; depends=[Biobase graph Hmisc]; }; 838 - S4Vectors = derive2 { name="S4Vectors"; version="0.30.2"; sha256="0n13j8fkiy8b071wvwwh3ip9cvq22f74hb1msx91mdab2xl47zxs"; depends=[BiocGenerics]; }; 839 - SAIGEgds = derive2 { name="SAIGEgds"; version="1.6.0"; sha256="0liacxqmalsmg4siafvbas177n6q53rzf2j9hhxv25gp97kld85s"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; 840 - SANTA = derive2 { name="SANTA"; version="2.28.0"; sha256="0nncii7zwgrw8l4njiw63x3ml6qfm53sa29ldrlipaynmv1cwdzh"; depends=[igraph Matrix]; }; 841 - SBGNview = derive2 { name="SBGNview"; version="1.6.0"; sha256="0b44b5ll7ydq6a15543glcwpw4kyvrbfjzwh99v0s8mnpxjfqrfn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; 842 - SBMLR = derive2 { name="SBMLR"; version="1.88.0"; sha256="0sd3ck7milkxdaz3ng4kra70xch5b8db444na3r92m8c1kxbwh28"; depends=[deSolve XML]; }; 843 - SC3 = derive2 { name="SC3"; version="1.20.0"; sha256="0cix5yym8jr6izb14c0lysj8n5015nl94sqlzsqqfdhg0011lhlw"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; 844 - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.34.0"; sha256="1aqm2dwh3dri1mz6h8j033z2bpng5raffj6q58xviwivsmy26kgd"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; 845 - SCANVIS = derive2 { name="SCANVIS"; version="1.6.0"; sha256="1mi9hh5h3wwy1rnj515rzcr0wnh4p4ndg6lc0x94zvvl2agkganq"; depends=[IRanges plotrix RCurl rtracklayer]; }; 846 - SCATE = derive2 { name="SCATE"; version="1.2.0"; sha256="17jlk8r7rh095ikghqj8kp46wr9wkjj9bkc09jgpifyg59kwx1n8"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; 847 - SCArray = derive2 { name="SCArray"; version="1.0.0"; sha256="1i75c3wr48qxfpmma1ixanykvq625y28pjs8pm29qcl8is3nix92"; depends=[BiocGenerics DelayedArray gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; 848 - SCBN = derive2 { name="SCBN"; version="1.10.0"; sha256="1iajwwkjdgcixvpjppbfz7k0v4929f7ihjx6vic6k96w3r5fvvkk"; depends=[]; }; 849 - SCFA = derive2 { name="SCFA"; version="1.2.0"; sha256="13rpp8iw9rrq15w937dvx0z9xd2f68snrjnjya0rkdjgjlk51970"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; 850 - SCOPE = derive2 { name="SCOPE"; version="1.4.0"; sha256="026cjqmn5d12a54d3nxvpjbyg1wl8msn7fh3nkyb7gcaniyxnkx2"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; 851 - SCnorm = derive2 { name="SCnorm"; version="1.14.0"; sha256="0mm9yikr0aj4k8dm6iiqs32rpj5vpyx9bsphsw7fvq16rc7fizjl"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; 852 - SDAMS = derive2 { name="SDAMS"; version="1.12.0"; sha256="13ppvb73yaplcckigwvqc1whw8dr16gakp415iqif0n1ry2pg8a7"; depends=[qvalue SummarizedExperiment trust]; }; 853 - SELEX = derive2 { name="SELEX"; version="1.24.0"; sha256="06h5vrjb98l6fj8v09jrfskm0734lzx7zc1v38640vdrrz2857vp"; depends=[Biostrings rJava]; }; 854 - SEPIRA = derive2 { name="SEPIRA"; version="1.12.0"; sha256="08f2wgfrn2r5xxz85c9jjchyy923fa82mdb4l4rmmvl08qvfv0xl"; depends=[corpcor limma]; }; 855 - SEtools = derive2 { name="SEtools"; version="1.6.0"; sha256="17ykywi368fmsncsjcmgz3g75wgp2s50vk5gvxsciypsmffvnicc"; depends=[BiocParallel circlize ComplexHeatmap data_table DESeq2 edgeR Matrix openxlsx randomcoloR S4Vectors seriation SummarizedExperiment sva]; }; 856 - SGSeq = derive2 { name="SGSeq"; version="1.26.0"; sha256="0i1yaw8h8gibakvaf1xd6nnjx2bsb2s9c0q74rbq9lm7haihivp6"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; 857 - SIAMCAT = derive2 { name="SIAMCAT"; version="1.12.0"; sha256="1dn3kp30052vf7r1bf4k4bz29vj6l47jryiznpam30vfzhj7z4i0"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; 858 - SICtools = derive2 { name="SICtools"; version="1.22.0"; sha256="0hcwpdl9h46k72yppz6gbsyj5q52bpfqv8xmz9f7sddpw0r3zwk5"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; 859 - SIM = derive2 { name="SIM"; version="1.62.0"; sha256="01blkbvv1j7fvrxc1dv4b4gg24rmd7qaqdqvai5zzwawgl6lx9rn"; depends=[globaltest quantreg quantsmooth]; }; 860 - SIMAT = derive2 { name="SIMAT"; version="1.24.0"; sha256="0nlszv5k39f09z9jqm935xc9w6crd2wcvz2b4a26rm23872gxhwr"; depends=[ggplot2 mzR Rcpp reshape2]; }; 861 - SIMD = derive2 { name="SIMD"; version="1.10.0"; sha256="1y27cz440g19wkmg7vgbdgfxh2hpm9mfibwc41iggp1bmlbpi9i1"; depends=[edgeR methylMnM statmod]; }; 862 - SIMLR = derive2 { name="SIMLR"; version="1.18.0"; sha256="1w05kqykwi1f3rv35pcgjd1q62h54k9zsavw54fkvgyl9h3ham42"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; 863 - SISPA = derive2 { name="SISPA"; version="1.22.0"; sha256="0m22blf9y9pvfdm0qcym2m3c2vlhgg7ys2i481fvfblsfb4vqcgj"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; 864 - SLGI = derive2 { name="SLGI"; version="1.52.0"; sha256="1cfyz3s3qq391ch4pnz2q22kknkf6ndjahkvfmwyj2ds2b8lmiw1"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; 865 - SLqPCR = derive2 { name="SLqPCR"; version="1.58.0"; sha256="0bljq5b14wj7z04gipd8xfxwayz1i1lgnwyw9x4nvdr24byaxa4p"; depends=[]; }; 866 - SMAD = derive2 { name="SMAD"; version="1.8.0"; sha256="03679hhgzc1fvbpy5vvx52f1ii8n7mmls9hg5inrd2ahnqcszd32"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; 867 - SMAP = derive2 { name="SMAP"; version="1.56.0"; sha256="1j3xmka2nyv6qfvq0gi3wp7dp44m29v1p7xi28d58wjkqq4x9scw"; depends=[]; }; 868 - SMITE = derive2 { name="SMITE"; version="1.20.0"; sha256="1lilgqsfgk5w80rf0mr5fwnqcmh3a872hy4zflmg3a016kaskbwx"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; 869 - SNAGEE = derive2 { name="SNAGEE"; version="1.32.0"; sha256="1fpgsw0b8nyzbkandgs0lnc5dxfp2yx4j5yfms63sp63ch0fp227"; depends=[SNAGEEdata]; }; 870 - SNPRelate = derive2 { name="SNPRelate"; version="1.26.0"; sha256="0m3ss821fhjcsnbdzwc93h42dhjsiklbfyizpwyzpkmq0c4l2kba"; depends=[gdsfmt]; }; 871 - SNPediaR = derive2 { name="SNPediaR"; version="1.18.0"; sha256="0ndggr90ir090iwqw3j87j5393pw0nc3pn3hn9gaipwg8vh3x12j"; depends=[jsonlite RCurl]; }; 872 - SNPhood = derive2 { name="SNPhood"; version="1.22.0"; sha256="06ijhbwvx4qac68h7qpynk44drafmaqi0nyf5qwsfxifh596vhv9"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 873 - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.0.0"; sha256="1v7fpq909nv3dz0ard9bxhza55m664g1i7qflsj6w8n2jkq7kmvp"; depends=[Matrix mgcv VGAM]; }; 874 - SPEM = derive2 { name="SPEM"; version="1.32.0"; sha256="1kw8najzffwglmxjv949n19iiprhlmvbrvghkp2cdyrhlwsy56ss"; depends=[Biobase Rsolnp]; }; 875 - SPIA = derive2 { name="SPIA"; version="2.44.0"; sha256="0spsf8ssc59axxlbjv2xxd5drvqg9c7hmyhnnngmfwccfz5j3w89"; depends=[KEGGgraph]; }; 876 - SPLINTER = derive2 { name="SPLINTER"; version="1.18.0"; sha256="13x43b32gl7ya0iisfml5k8bb1flf0sv4ipkjchbi13daw68jz7z"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; 877 - SPONGE = derive2 { name="SPONGE"; version="1.14.0"; sha256="0xz3yr6pv32p7a504514ymd8ijcnwqvrc2vs8kpc5acc8x9wxla7"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; 878 - SPsimSeq = derive2 { name="SPsimSeq"; version="1.2.0"; sha256="031y2b6prbxlpdl52g1y9x5gl9bf5n0604s99wp7m8a2xb60xhr2"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; 879 - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.6.0"; sha256="12gyq44s23r5d2yb2k8iyxfnlrrnad8qzzir7lzdsc05j1wa69yp"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; 880 - SQUADD = derive2 { name="SQUADD"; version="1.42.0"; sha256="0ja02v1yzj8l414wpxwgcci5xlrnpsxljga8c5z79ri37kk19nh5"; depends=[RColorBrewer]; }; 881 - SRAdb = derive2 { name="SRAdb"; version="1.54.0"; sha256="1b9mg42ff8a48l3796lb60chql9wmjmzy7cqdrh70g02f08nhx9w"; depends=[GEOquery graph RCurl RSQLite]; }; 882 - STAN = derive2 { name="STAN"; version="2.20.0"; sha256="1pk10c2wj6qk3sfdwc607a2x73778b85gsb2f6njjbb0pxqym9bw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; 883 - STATegRa = derive2 { name="STATegRa"; version="1.28.0"; sha256="0vd6i8kp0jr9926731vf94qk2vjq4y524ryzz1qj1mb5xz5lswcq"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; 884 - STRINGdb = derive2 { name="STRINGdb"; version="2.4.2"; sha256="0h9yw8hy7v25w3ap6bc60qiarxhrf7vaqs91mawszvqjgjv97a1d"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; 885 - STROMA4 = derive2 { name="STROMA4"; version="1.16.0"; sha256="0akzwnccwhdm3g51fhbkchryxdp130lakk1s0vx5z3d0k45c6w5z"; depends=[Biobase BiocParallel cluster matrixStats]; }; 886 - SWATH2stats = derive2 { name="SWATH2stats"; version="1.22.0"; sha256="1p69v8j2cd5pfp4bxgmyn8ga3mgd192rb7f38mrz4bmcfpv7ds4v"; depends=[biomaRt data_table ggplot2 reshape2]; }; 887 - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.46.0"; sha256="1lfq2qy06migrwkk5yadbipml7741dlripvfl7a5h3yj8a0wys5x"; depends=[]; }; 888 - ScISI = derive2 { name="ScISI"; version="1.64.0"; sha256="0y6gz15salvkcrdadq5vq7crw0lk83azgicvx5ghj0jb78l7dkwm"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; 889 - Scale4C = derive2 { name="Scale4C"; version="1.14.0"; sha256="0xq0sj9vahddnpm6d30szzfvmalizpy4zqq75s8hhq9j40165br9"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; 890 - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.0.0"; sha256="1j96fvw1waqxbv5c8myfmhsidq370z03yz13yqmrs4nn1rpn1a06"; depends=[DelayedArray Matrix S4Vectors]; }; 891 - Sconify = derive2 { name="Sconify"; version="1.12.0"; sha256="14sg3lahn0fnipymq2li43sl50cxrw2lxzgzffkjn8y4blwvac2i"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; 892 - SemDist = derive2 { name="SemDist"; version="1.26.0"; sha256="0281hmyr0x6gr640bjzkdmzjn5flbnggjxff4p3hxx7l08nsb0gr"; depends=[annotate AnnotationDbi GO_db]; }; 893 - SeqArray = derive2 { name="SeqArray"; version="1.32.0"; sha256="0nlcj5q6g71bywzivji0399nq92bfnxmkb3szmkwl1xv0hqm4vq1"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 894 - SeqGSEA = derive2 { name="SeqGSEA"; version="1.32.0"; sha256="1qh2qb7hb8nb13jcfz8f5bkxigd439rrrixym5p3y4x6016jhpyn"; depends=[Biobase biomaRt DESeq2 doParallel]; }; 895 - SeqGate = derive2 { name="SeqGate"; version="1.2.0"; sha256="0y9nmdcdn8bzg00a0hn5gs9fyijc1ckcg7cim2rgfzz6nwl9g9cz"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; 896 - SeqSQC = derive2 { name="SeqSQC"; version="1.14.0"; sha256="0d3nrdjwmm4rsl5303rp3c045s1k6nzshsaah7nagnymgjfn96xw"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; 897 - SeqVarTools = derive2 { name="SeqVarTools"; version="1.30.0"; sha256="1bim6xp8w5a11qbazcalfdhhamzgl2yb5h6kf54n9jmqbl65qxy7"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; 898 - SharedObject = derive2 { name="SharedObject"; version="1.6.0"; sha256="1f2rz7d1h6gilxrlj2v800y8ak6pyp1vw8p1yyqm8sqcvw30qbm4"; depends=[BH BiocGenerics Rcpp]; }; 899 - ShortRead = derive2 { name="ShortRead"; version="1.50.0"; sha256="0zqinw3c6h5v1c5nhzkiziirws16nbviccgw8nj2d22r33dbqwp3"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; 900 - SigCheck = derive2 { name="SigCheck"; version="2.24.0"; sha256="1vhnv79lbrqjrhmh575yl844bckmmdfs4vawxxraswlhc2vdpnaf"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; 901 - SigFuge = derive2 { name="SigFuge"; version="1.30.0"; sha256="0166fy52lbvbbss94hlkvgkcyih265ikzaf0v563rpv8na8lgc4b"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; 902 - SigsPack = derive2 { name="SigsPack"; version="1.6.0"; sha256="0dx7z3vwvx9g7fsk6gnybqafvsq8na1sw95m54778nwd6kfknp1g"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; 903 - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.30.0"; sha256="1nxk3w3k4y5xn31mdwk4z4lwrwkcmf3hwvsa9zi7afrhqfsq4k2w"; depends=[Biobase limma mclust Ringo]; }; 904 - SimFFPE = derive2 { name="SimFFPE"; version="1.4.0"; sha256="14i87h4ajrfvdyqlgpld8yxfvb6qqc0pa3c72aydmacw5p4kw9zd"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; 905 - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.14.1"; sha256="1bwdhx0ss0s8f4xdgwd7x48apn849x4dyb5hbyglcz31r5vh1qgz"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; 906 - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.4.0"; sha256="08gcx0ml63fdr3r1rshddfyawy7ay7vsvnbs7g0xrmrn7089d5yd"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; 907 - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.0.0"; sha256="0ad1597fcw8r41agrmv8pdrzs4iin87c29x4ps8dzykaqhyckpan"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; 908 - SingleR = derive2 { name="SingleR"; version="1.6.1"; sha256="160inn831dg6vx4mnl2wm89f1cqwcn754r2iddhphqnzbqslqvfn"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; 909 - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.28.0"; sha256="0jr11c9hz7m49xc8pi6xrr5fhbv68vafvqpzhr0pmm51vvr1vfs9"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; 910 - SpacePAC = derive2 { name="SpacePAC"; version="1.30.0"; sha256="015rd0mldm858ji7wac8flcjxy7055fv27vv1yip2zrxdyg6b2k3"; depends=[iPAC]; }; 911 - Spaniel = derive2 { name="Spaniel"; version="1.6.0"; sha256="16yj4pz8fngq1j8lm4y2fw72ij7y17zadwsagjzqrdbq3wxr4p8j"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; 912 - SparseSignatures = derive2 { name="SparseSignatures"; version="2.2.0"; sha256="0mfd9kn9hbpk6l9n96vl6sfm8hzl3lmj6q79svpjh0ng067aaxpf"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; 913 - SpatialCPie = derive2 { name="SpatialCPie"; version="1.8.0"; sha256="1f3mdjhnv01hqddxl0md749lwpmzc82vdy55591c4cqxvffh6lrj"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; 914 - SpatialDecon = derive2 { name="SpatialDecon"; version="1.2.0"; sha256="0sdlz4ikddvghs3r1dbdqkhgl6351rgawy799kam6x0pkcsf2chr"; depends=[logNormReg]; }; 915 - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.2.1"; sha256="1dx8s4mx95ibwsdfy3mb3xkavng7qwfrjwv3hbf4abxy8vyg2zl5"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; 916 - SpeCond = derive2 { name="SpeCond"; version="1.46.0"; sha256="1si7xmmhcklq00cpzsf1w4sg1w6bxp1yk16l25h1znhmpwby65x9"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; 917 - Spectra = derive2 { name="Spectra"; version="1.2.2"; sha256="0781iq76mbz99rf28nvzv3rc9iv9h71sc7r7yjgyfprxas3a0yrs"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; 918 - SpectralTAD = derive2 { name="SpectralTAD"; version="1.8.0"; sha256="1bi7r0qid9xa0zzyh32hgi8fyw184dfc7lksrls4ngvy6282sc27"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; 919 - SpidermiR = derive2 { name="SpidermiR"; version="1.22.1"; sha256="0019ax9m1bnmg78hczkxi9zb2i9iqxlgmanwaxffrfj31r2qr2kr"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; 920 - SplicingFactory = derive2 { name="SplicingFactory"; version="1.0.3"; sha256="0nlhpnkvcc8h9sgdhlsfsf8yz232cyfwyayqhj5c6ix4y7r1rvxm"; depends=[SummarizedExperiment]; }; 921 - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.32.0"; sha256="07037qz88iv6v7fzvb3xbvhqrfzn67vkj9kc8hyyscks487bzd21"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; 922 - StarBioTrek = derive2 { name="StarBioTrek"; version="1.18.0"; sha256="0ih2ycqv6ybrzmrn26pbhpcmmbv1r9k0i0286ycd78lawd1ybqwb"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; 923 - Streamer = derive2 { name="Streamer"; version="1.38.0"; sha256="0bszwkfmq4sk60842far10wlafbplin8b82bp702zkf517vjcyva"; depends=[BiocGenerics graph RBGL]; }; 924 - Structstrings = derive2 { name="Structstrings"; version="1.8.0"; sha256="0m4lk3w506w4b8793hhqzazg3s4fqnrm4mr70ba90pq18jcffsnn"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; 925 - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.8.2"; sha256="04ac4mjh3pgdlws0aiacqg0vd7bhg890w44r7b90p947c3rk1mfw"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; 926 - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.8.0"; sha256="03wccycmj4krvknwk12jkp8mg6c4adk454akfybgydkydws0vh2y"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; 927 - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.10.0"; sha256="1s629qqaqs8yr20k99ahq1fk0jr8ka60s1qpvzy80wmha7khzaix"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; 928 - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.22.0"; sha256="16np5ik6jgbi68mhlib6yskywwbaa50mlr7m3sh1hqk889whfn1g"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; 929 - Summix = derive2 { name="Summix"; version="1.0.3"; sha256="1yvcf4mkz9hclx52zhiz9gzrvspkasc6rayyhw5x7x9c0fxdh6y8"; depends=[nloptr]; }; 930 - Sushi = derive2 { name="Sushi"; version="1.30.0"; sha256="1m5l0nflhcynb3gz7b8qzvknb0s6xhds8z1yl3mbv8ic9qn2knv4"; depends=[biomaRt zoo]; }; 931 - SwathXtend = derive2 { name="SwathXtend"; version="2.14.0"; sha256="08j4d2yyxvf8zch5paai5pr48b6g6yzh67500gv8w2pmx8mnwaml"; depends=[e1071 lattice openxlsx VennDiagram]; }; 932 - SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; }; 933 - SynExtend = derive2 { name="SynExtend"; version="1.4.1"; sha256="0yl66fs0h871rdkgdnvnmjnakh6lyxg2h7l1iss8sd5ysd9xgnkz"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; 934 - SynMut = derive2 { name="SynMut"; version="1.8.0"; sha256="09fszipz9nfhxhzyq27ng9xlip9gn29hs70gblr0ssz3g6bi7mni"; depends=[BiocGenerics Biostrings seqinr stringr]; }; 935 - TADCompare = derive2 { name="TADCompare"; version="1.2.0"; sha256="1w7pw16kzh4wgzk97d83sysggbabarvcvjvq3z66pxf8p647fxy4"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; 936 - TAPseq = derive2 { name="TAPseq"; version="1.4.0"; sha256="1smv992954wr26ljycram7mlf9yjx38mmcma7agqiqyfqafn7dci"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; 937 - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.4.11"; sha256="173pgd4rv1ry81kg1fpc0bllryx5zgg7xfpj06plwv5lx31v0nb0"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; 938 - TCC = derive2 { name="TCC"; version="1.32.0"; sha256="0im8gc5v28d4a5mrn4905x0kr0427x6qnr6nyawyrf6pcy13ffwd"; depends=[baySeq DESeq2 edgeR ROC]; }; 939 - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.20.1"; sha256="0c6has5ch3q526f6h84s7g2a7mga4slga4i758lm0vpnzx2fj1v2"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; 940 - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.18.0"; sha256="0prsrzrzhf5w6nipjvwlc61c0za8xg8xiqfc5igqlhz3hxlw7c29"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; 941 - TCGAutils = derive2 { name="TCGAutils"; version="1.12.0"; sha256="00xbby4kzifkxm7aff9vha80kfbb311yj3fk3b4xvgmvpg9pwhiq"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; 942 - TCseq = derive2 { name="TCseq"; version="1.16.0"; sha256="0qjac5cg7gzdrx44v50l7yz15k36lf5qvp5p4r58n1vc3b8y23yn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; 943 - TDARACNE = derive2 { name="TDARACNE"; version="1.42.0"; sha256="0dvgyc5w45vzf4qrvfpkh8lvvvzlsz9bw2llwbwgm8lbi35j65vs"; depends=[Biobase GenKern Rgraphviz]; }; 944 - TEQC = derive2 { name="TEQC"; version="4.14.0"; sha256="1p07ika75mxj5w9q034lxbciwy2q5l72gmp7kkh1n7qbvslqrjf4"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; 945 - TFARM = derive2 { name="TFARM"; version="1.14.0"; sha256="01k21y63d59f33ivgdxvvgzklard7wpj86hzwki59d9nj3mfz52b"; depends=[arules fields GenomicRanges gplots stringr]; }; 946 - TFBSTools = derive2 { name="TFBSTools"; version="1.30.0"; sha256="1avgjv2nyr28cla0z9dvh3v0hr1f561sz2as1k53a42irbjk0var"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; 947 - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.12.0"; sha256="011nqd17fi3pk0am842w8dilc311pbsh5dqxzg8jw3i5wpr1ybrm"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; 948 - TFHAZ = derive2 { name="TFHAZ"; version="1.14.0"; sha256="1arfl18f7ihyxjzj4lgda04bhnf7rgxyzbflzlm6l8kj8jdkp10v"; depends=[GenomicRanges IRanges S4Vectors]; }; 949 - TFutils = derive2 { name="TFutils"; version="1.12.2"; sha256="1rl79zjyfq0dg42qvf1hn20s94cjw6mwclwl7mvy9nlxb04wqvj8"; depends=[BiocFileCache dplyr DT GSEABase httr magrittr miniUI readxl rjson Rsamtools shiny]; }; 950 - TIN = derive2 { name="TIN"; version="1.24.0"; sha256="1wmsyxj9vsxl3c8mbzd8h0zvgzrskzqxf5b0r40nd5iky038amxz"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; 951 - TMixClust = derive2 { name="TMixClust"; version="1.14.0"; sha256="0vf3a81b6xp8bafx0wh3af2x5wyvx2nkq237lzpnhp15h6m9wckq"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; 952 - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.8.0"; sha256="0qjgsjymgxs68zvkyl37vrdybymfkqdy5hjd7i9nlfa33nmh69pz"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; 953 - TOAST = derive2 { name="TOAST"; version="1.6.0"; sha256="1k1hn5gp4rhvws2h40mwflsdmlad0qjxixwm1a76xhgpdhkj3cfb"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; 954 - TPP = derive2 { name="TPP"; version="3.20.1"; sha256="1m0s74xxzxdpizxal0wq6p848qs1v2v7hhqjsjh7wrjmb0ff4k99"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; 955 - TPP2D = derive2 { name="TPP2D"; version="1.8.0"; sha256="0vfiap2qw740ll88dhnkc5j95gxw61zqp3z1s7wd7j4pasg13cwc"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; 956 - TRONCO = derive2 { name="TRONCO"; version="2.24.0"; sha256="0cvf7x6hzkfjx4k06dny3s97nha63qws1jxv6p7fa72hsnm4ylik"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; 957 - TSCAN = derive2 { name="TSCAN"; version="1.30.0"; sha256="1xpgqafy3irfdhc63qgkim1ydkdf9i912ad4b41yyzdvn8infmyz"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; 958 - TSRchitect = derive2 { name="TSRchitect"; version="1.18.0"; sha256="02xjp3ibasnwrsrjvs9dplnf8qvlmmy67l3ffadgsjv69fcdxck9"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 959 - TTMap = derive2 { name="TTMap"; version="1.14.0"; sha256="1kl03hilvpgcxf6an684kn77wa7slf2pp5ksq67bk7fqcqdxyncl"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; 960 - TVTB = derive2 { name="TVTB"; version="1.18.0"; sha256="1zz14wph4c2nfpcbbfjs0mq3h6ifj8qrlhwhys2858w2yp1bqhvg"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; 961 - TarSeqQC = derive2 { name="TarSeqQC"; version="1.22.0"; sha256="0ym8v2hs2a2b53wb7kp77dbzs1smb5fci9jw52kypjnc23gqbh3q"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; 962 - TargetScore = derive2 { name="TargetScore"; version="1.30.0"; sha256="0wjgi2fmdyflnc4shmkj11jfxgsydjm8494q0p9mxbskiyv850mn"; depends=[Matrix pracma]; }; 963 - TargetSearch = derive2 { name="TargetSearch"; version="1.48.0"; sha256="181ggjmqpi0hm2b4r8g7igw13jl8pqh31gv7xy3ppn5f0wsjsnal"; depends=[assertthat ncdf4]; }; 964 - TileDBArray = derive2 { name="TileDBArray"; version="1.2.1"; sha256="1n88c3i0yjqsxrbqrsg5nzx4ryx4b3k1vz5xm0xlnxvzbib3899r"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; 965 - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.10.1"; sha256="1095a2ynxcf9xiac5cjzslcbmjnjpbby0vy7d84qagdiq1w6mrhn"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; 966 - TimiRGeN = derive2 { name="TimiRGeN"; version="1.2.0"; sha256="06ddrkvppbx1fwh66ycxk1vprk01bfq40671s3n7jbfldfysnyjl"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; 967 - TissueEnrich = derive2 { name="TissueEnrich"; version="1.12.0"; sha256="16zq2z1mp0nal0a9h8rq398y90clabkzd503li67yb8iz21n4lin"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; 968 - TitanCNA = derive2 { name="TitanCNA"; version="1.30.0"; sha256="0j1pra14gsadp684hxz2w4cz8c64p7hhajkakm5n2m3019ws96gw"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; 969 - TnT = derive2 { name="TnT"; version="1.14.0"; sha256="1gcs8vcqayzi0vg05zqamn7xpc7ny13k99zc60rcz5ln31srq0h2"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; 970 - ToxicoGx = derive2 { name="ToxicoGx"; version="1.2.1"; sha256="0c5bgg73k7x5zqhvpjqfifzpsn8671ag0051d662ws2ydmycp7vw"; depends=[assertthat Biobase BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; 971 - TraRe = derive2 { name="TraRe"; version="1.0.0"; sha256="01rjslihmis6l0x4c4g03rh7qfgqidbwa0gdqz0n8pgjydy519nl"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; 972 - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.0.0"; sha256="0yjscggc0ysnznzqk3inm0mm2k0nyabxg71h3fql6nq4jzdn3r84"; depends=[ggplot2 pracma rgl]; }; 973 - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.0.0"; sha256="1b7mg3ypp1ay98cav47h9vn692lx0n9b5b0hpansgnkr5prb823b"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; 974 - TransView = derive2 { name="TransView"; version="1.36.0"; sha256="1n1kfvxf2wixyv5qlgmcmqdd44d3vkkywdvc8w531gjv8cxbpn7a"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; 975 - Travel = derive2 { name="Travel"; version="1.0.0"; sha256="1r4ydwxf8h45isd5yshfpl5b8s739ihlkazq9rpnvbrrrm3sv1lj"; depends=[Rcpp]; }; 976 - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.4.2"; sha256="0kjasyx52n5gafil7vminssynarngna705d70rbs5c9pg9ww4bzi"; depends=[ape igraph RedeR]; }; 977 - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.0.3"; sha256="08wyapshn3r1b0hbcmrjgw9vqbgv5xfkdwps8hjpf7xxbldacscz"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; 978 - Trendy = derive2 { name="Trendy"; version="1.14.0"; sha256="0idsac35j1wf0n8r6sb3mgqm7ldga05mp7xj429v7i9lqxswqccd"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; 979 - TurboNorm = derive2 { name="TurboNorm"; version="1.40.0"; sha256="1mblkfdic863sk88ic7g6z2fjkfj6hpz1rki9irid47w644fnxf6"; depends=[affy convert lattice limma marray]; }; 980 - TypeInfo = derive2 { name="TypeInfo"; version="1.58.0"; sha256="0l71asilfz0868d792s64fsxw63jg2s6iqx215m9mix8cszbh4wy"; depends=[]; }; 981 - UMI4Cats = derive2 { name="UMI4Cats"; version="1.2.1"; sha256="1iqrnl9bl9rgcpm6wb8cg70hdm39bbl2pin59yiivjzm0zwyvwxp"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; 982 - UNDO = derive2 { name="UNDO"; version="1.34.0"; sha256="0pys5nfznspfm45pacfygfafxr93pj76wxa9ij1sj5xhn0sr1wg0"; depends=[Biobase BiocGenerics boot MASS nnls]; }; 983 - Ularcirc = derive2 { name="Ularcirc"; version="1.10.0"; sha256="1nb902vi30gcs8msdm4aslvv0qnbaz4pl3zsxwxg8s8p1hq8q88k"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; 984 - UniProt_ws = derive2 { name="UniProt.ws"; version="2.32.0"; sha256="153wz9pwzijah0qjaxmss0rkbwlnbihpjmliggs1ns84nya4v8ls"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; 985 - Uniquorn = derive2 { name="Uniquorn"; version="2.12.0"; sha256="0jxi4d0zcypcc3kvvzhdw9bbzf719s54wwq3sgkwkmnwhb027xix"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; 986 - VCFArray = derive2 { name="VCFArray"; version="1.8.0"; sha256="0y1rgncfa1kyqzqk194c8lfqjhi0qlb4lljmba9ax82iican5pcz"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; 987 - VERSO = derive2 { name="VERSO"; version="1.2.0"; sha256="1jgycqm1pmz5is8rn376lr0lmivkfqp1bkpbilm9d2z2ibzhnfzz"; depends=[ape Rfast]; }; 988 - VaSP = derive2 { name="VaSP"; version="1.4.0"; sha256="0v2v0gp6xghma36z9bs4yqjgw4cnzamr5jl4cybpbg7c54jh5czs"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; 989 - VanillaICE = derive2 { name="VanillaICE"; version="1.54.0"; sha256="0f118783a1rp0j00ddrrcgj1lg1rfz4wj2kx4fccq3nqr2n4j0bz"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; 990 - VarCon = derive2 { name="VarCon"; version="1.0.0"; sha256="1bz2ppyysni1aj08024qbp9k55wwm73lxga2f0ln8hm8ik3zi8kh"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; 991 - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.38.0"; sha256="0c9r00j8a3bs6n0dv4wi17jc1ljzvr3r2bi4h9axhcsf2ip906rh"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; 992 - VariantExperiment = derive2 { name="VariantExperiment"; version="1.6.0"; sha256="0p9ds0spm7bi4l9scfvrn78v8jfdd7nsal344bq246pfpxyd567i"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; 993 - VariantFiltering = derive2 { name="VariantFiltering"; version="1.28.0"; sha256="0abhrk53csd9jz9sv4q1qr74jax9mbj2icbz1iilf1123nvnjypd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; 994 - VariantTools = derive2 { name="VariantTools"; version="1.34.0"; sha256="1gpzrln2clfrja8rzxhsis6bi1xqglh3h2lhvqlnrx4lqxhbkv9c"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 995 - VegaMC = derive2 { name="VegaMC"; version="3.30.0"; sha256="0wah3679zyx5q4p3fq5nv1z86nsqgp7n4k40l42hflc5bb3adrgx"; depends=[Biobase biomaRt]; }; 996 - VennDetail = derive2 { name="VennDetail"; version="1.8.0"; sha256="0y24vrax9hp2xjycdr74phs3032hhjaf6hvmh0xdx891val91f6h"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; 997 - ViSEAGO = derive2 { name="ViSEAGO"; version="1.6.0"; sha256="0adyxxvp66pb69hbxs6cg5ny9ggixw7fn3p5s30wfd8xp7d3zf38"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; 998 - VplotR = derive2 { name="VplotR"; version="1.2.0"; sha256="099z7267bpcw52xb3kd61mj0096knpgalbgf62d2pvdx74vd793l"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; 999 - Wrench = derive2 { name="Wrench"; version="1.10.0"; sha256="0yssmqayaryrc0asjjqxdipqdfg309llrzldx38jrfgdsza6bvs0"; depends=[limma locfit matrixStats]; }; 1000 - XCIR = derive2 { name="XCIR"; version="1.6.0"; sha256="0cavql8fyw7vrmkdrd7cn1l5pmlgysqcfnbmgjc9fam81h3lqmcs"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; 1001 - XDE = derive2 { name="XDE"; version="2.38.0"; sha256="0wdc0lgjijggxbqkbxcy2hlr3kyrxydq7dd1a4mqmc2sqjnfn3wk"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; 1002 - XINA = derive2 { name="XINA"; version="1.10.0"; sha256="00h5r2iwyy5w4mcga6155gllbiy834bfzkmy60pzsckm8j7zzs95"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; 1003 - XNAString = derive2 { name="XNAString"; version="1.0.2"; sha256="11jxmjyk6riivgsfjvwwdq9d2h9787dgz27vlib9khr1q40vh5ia"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; 1004 - XVector = derive2 { name="XVector"; version="0.32.0"; sha256="1cw34gd9iaspl0v737xl7rngq63zrj03a5ngai15ggrnv1sq2aqr"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; 1005 - Xeva = derive2 { name="Xeva"; version="1.8.0"; sha256="09a3f81fdbak94q8v11ww6s55fyzjqdynnd7jdpxrkzmg4f524y9"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; 1006 - YAPSA = derive2 { name="YAPSA"; version="1.18.0"; sha256="1xfkgjlm0rxz82qcaqzx95cwirxifd9dsswjg3zcqmz03v7a0gz2"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; }; 1007 - a4 = derive2 { name="a4"; version="1.40.0"; sha256="0bwn185admy5k99fkd2dhhvy7x1f75r0mqn5k24dbbg0paw6nnr8"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; 1008 - a4Base = derive2 { name="a4Base"; version="1.40.0"; sha256="101w4i0w8n7qhki22qr8l8wk8w6zalzmcywqm2g4238qv7xbnr8p"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; 1009 - a4Classif = derive2 { name="a4Classif"; version="1.40.0"; sha256="1lz85bys5dp5d1ir9c9c4wy85wkk62s14niyzzxaqrxpsji2p2iw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; 1010 - a4Core = derive2 { name="a4Core"; version="1.40.0"; sha256="00fi753nsayv0xspavw8r9ni1sim8ng33hp3d3kj2b8ihygd1s10"; depends=[Biobase glmnet]; }; 1011 - a4Preproc = derive2 { name="a4Preproc"; version="1.40.0"; sha256="1jibm2f5glzsrvl64hxc5sf59d4w6ry0f663p619hfr44mi1mpri"; depends=[Biobase BiocGenerics]; }; 1012 - a4Reporting = derive2 { name="a4Reporting"; version="1.40.0"; sha256="09jjfby5znmg2fdkhpbinx2v21zrfa44qq7cylcn9ipffqx3pk86"; depends=[xtable]; }; 1013 - aCGH = derive2 { name="aCGH"; version="1.70.0"; sha256="0x1d3byyapzn1nn4s1capr6a0krhail4bdgjrcwn0rv95fd2mzi1"; depends=[Biobase cluster multtest survival]; }; 1014 - abseqR = derive2 { name="abseqR"; version="1.10.0"; sha256="1xvk84gd1lfq1icrfwwd6y79zywrisfnc3knprigzzax31aks32c"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; 1015 - acde = derive2 { name="acde"; version="1.22.0"; sha256="19ys7qc167s1fdma6ija9ach1a2i5al4bz6h6f45a62aryi7ppxw"; depends=[boot]; }; 1016 - adSplit = derive2 { name="adSplit"; version="1.62.0"; sha256="0l90kd88z7i65rlhzi571cw70jff2zl63029c9sfvkkk1yc2v7jv"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; 1017 - adductomicsR = derive2 { name="adductomicsR"; version="1.8.0"; sha256="1k2ns0xmdwbfwnjfafa3vc20nydqqgkm6kri49aa2dhlwanh3d9k"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; 1018 - affxparser = derive2 { name="affxparser"; version="1.64.1"; sha256="0lr0kmp087j2g4i5kd7rh8a038ymp6z82861lyql2fwk5dh80043"; depends=[]; }; 1019 - affy = derive2 { name="affy"; version="1.70.0"; sha256="0vz5y92gqcm0qk57qlba85bk683lzdr7vkmxv109rq6i17vdkkrm"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; 1020 - affyContam = derive2 { name="affyContam"; version="1.50.0"; sha256="0242ga68wrdk1kcmxfdbq73a0d3zhrzdlzkzphfg3q0zjbvg49jj"; depends=[affy affydata Biobase]; }; 1021 - affyILM = derive2 { name="affyILM"; version="1.44.0"; sha256="1q26cyq02y443v6phl73ccjn9l0a2lry51xr34wnyk16v5w5v8nn"; depends=[affxparser affy Biobase gcrma]; }; 1022 - affyPLM = derive2 { name="affyPLM"; version="1.68.0"; sha256="0w2c605kljf6s8fvpb3420izpjkiwgab849xv0lph9zxdf5xwl32"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; 1023 - affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; }; 1024 - affycomp = derive2 { name="affycomp"; version="1.68.0"; sha256="07my5scdh6h0y1bx1h9y5m4fa8bnmw389f83gkb7cf19w4vp36b2"; depends=[Biobase]; }; 1025 - affycoretools = derive2 { name="affycoretools"; version="1.64.0"; sha256="1dx861spr3kn1dxwhf43s5l1r7bmrq0h6538l3q64iiwzzc6krdh"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; 1026 - affyio = derive2 { name="affyio"; version="1.62.0"; sha256="07kibqsm888g06qqqa4648ph877kriy74kprbri8nyx83y8aspjr"; depends=[zlibbioc]; }; 1027 - affylmGUI = derive2 { name="affylmGUI"; version="1.66.0"; sha256="1bib92p6iyf3gfgwmqnw864zi3k7wy46l17wis0h898ywbvnhbka"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; 1028 - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.2.0"; sha256="09mq7ypc7miablslfsbx1s5nz17ams2ri2ynbbs2s1v50risspbq"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; 1029 - agilp = derive2 { name="agilp"; version="3.24.0"; sha256="05ks3l3j74n5hgqsywavcylrk7lyg07b92c5qk6krvsckm23ksgv"; depends=[]; }; 1030 - airpart = derive2 { name="airpart"; version="1.0.1"; sha256="0cyyk0w6cyx0rw0gd9z7ha02b1v79x7fz04vvknn0ylkvhhdr9i7"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; 1031 - alevinQC = derive2 { name="alevinQC"; version="1.8.0"; sha256="1aq3j1k66sl09nfalgy18xns42lpwc9wph052096yr5rfqqq0bk6"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; 1032 - alpine = derive2 { name="alpine"; version="1.18.0"; sha256="157g24rf5pb9k2l3d608sp9kk9m8k39aipa39lg6qdl92qrqv6a1"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; 1033 - alsace = derive2 { name="alsace"; version="1.28.0"; sha256="1idjymd39cnjfmw31ay6kh0y8z2p3c1kq3dnklzf5w4q6cpiaqqq"; depends=[ALS ptw]; }; 1034 - altcdfenvs = derive2 { name="altcdfenvs"; version="2.54.0"; sha256="0b7a9cqf33klazz7301agifwdqnk41jk58r69s70bygl51lrx87a"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; 1035 - amplican = derive2 { name="amplican"; version="1.14.0"; sha256="11brvgcp6x432hn1q8q26agnf8nbgrr4zziv930jly2lwa1i2865"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; 1036 - animalcules = derive2 { name="animalcules"; version="1.8.1"; sha256="1vfnpd2r6pxqdm5s68xdaph1qa2p0zzrimkg2qmvr8vb26vsk10z"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC reactable rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; 1037 - annaffy = derive2 { name="annaffy"; version="1.64.2"; sha256="03y633vgxprd2abhanj4sanmb4ymz7az5aiasxn6wjzawiqjdcb1"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; 1038 - annmap = derive2 { name="annmap"; version="1.34.0"; sha256="0yarbfvxy44zpydi89gkw16cq09p0md2p0pqn585m3ms0mcxnyh4"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; 1039 - annotate = derive2 { name="annotate"; version="1.70.0"; sha256="13ny596wh65sw7dbw0zd4h84d6k1w99g91c4sqy83mdzgpv73sz7"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; 1040 - annotationTools = derive2 { name="annotationTools"; version="1.66.0"; sha256="18dd8saqx17fplvv5sbfz4p9fy7ksy3n9348rd3qlczihcrh9i3w"; depends=[Biobase]; }; 1041 - annotatr = derive2 { name="annotatr"; version="1.18.1"; sha256="1ls1qdfppcxysggi3bghrnspb5a3s40pm2mj4x0whc7c40cf90mg"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; 1042 - anota = derive2 { name="anota"; version="1.40.0"; sha256="039bmcv5l44gszb6xapbihp3mfqdaaa8mfc05y702p78i7x93g5y"; depends=[multtest qvalue]; }; 1043 - anota2seq = derive2 { name="anota2seq"; version="1.14.0"; sha256="08pmw7zmlwpshsdx1xrplx8cm78wh67hxyjj80jp4g6fx35f6m22"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; 1044 - antiProfiles = derive2 { name="antiProfiles"; version="1.32.0"; sha256="065q4ifqaahb3aff8qqknvn135av4vs527bpj7ap5cwhqg93j6hb"; depends=[locfit matrixStats]; }; 1045 - apComplex = derive2 { name="apComplex"; version="2.58.0"; sha256="1198gks7rd6wq74d2shz41w40dqv1nwv3ayn49g6nww10al7cmqg"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; 1046 - apeglm = derive2 { name="apeglm"; version="1.14.0"; sha256="1xld6ar440achik4dbd7vhiw6jfj0sb96jm52n7hav5bv4gag3mh"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; 1047 - appreci8R = derive2 { name="appreci8R"; version="1.10.0"; sha256="1ar199yka7n9w9j0j76v4lybjx0yhmjrjzcdvqywragjqzkf2w10"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; 1048 - aroma_light = derive2 { name="aroma.light"; version="3.22.0"; sha256="1yvq6l1p8cpijvlib4fn9y88ihn0gaalrmgx82jgrfmnszkqn3y5"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; 1049 - arrayMvout = derive2 { name="arrayMvout"; version="1.50.0"; sha256="0n0rsjjkf59d4mq97j305yflal6y96gqssds04sk8xc596xkbv67"; depends=[affy affyContam Biobase lumi mdqc parody]; }; 1050 - arrayQuality = derive2 { name="arrayQuality"; version="1.70.0"; sha256="19c8n48977xwsk9lq4j8dyp0hlxas58ln77z7jyp3p0r2s52c51s"; depends=[gridBase hexbin limma marray RColorBrewer]; }; 1051 - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.48.0"; sha256="1a7zm2myrizpn52lx07d7n9kaz358fsfdbm49546lanwhad3pi2v"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; 1052 - artMS = derive2 { name="artMS"; version="1.10.2"; sha256="1p0adqi8vh7nm207l18z981ghkb5x6280iswmy7plil5cv3dn17f"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; 1053 - atSNP = derive2 { name="atSNP"; version="1.8.0"; sha256="0adq27bfhy0br9948sdvxv829pvahl1cimqd4fc62pdx8caika8v"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; 1054 - attract = derive2 { name="attract"; version="1.44.0"; sha256="0h10lbjq73xsdgp631hkac88zl98r20vcr0xmlzg2f1jwq68gpfc"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; 1055 - autonomics = derive2 { name="autonomics"; version="1.0.1"; sha256="12y5gb1qxjf5dc6h8vbs8yyhsnhbg94yc5giydn4f3v16il3d2d9"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; 1056 - awst = derive2 { name="awst"; version="1.0.0"; sha256="0m0h4xi0i3v7kaycw8qppji5f9qcx8w100y15czj1mpq1z7pnchx"; depends=[SummarizedExperiment]; }; 1057 - bacon = derive2 { name="bacon"; version="1.20.0"; sha256="1yp0675n1g8rxdjdd7w8al5c9jq96h0kfm8218mc50z0p2fasgbj"; depends=[BiocParallel ellipse ggplot2]; }; 1058 - ballgown = derive2 { name="ballgown"; version="2.24.0"; sha256="0ff8z4pfgzai2q4aafclg36bhsi9jwl9xhh1p9fqhmikisscq7i1"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; 1059 - bambu = derive2 { name="bambu"; version="1.2.1"; sha256="12zpqksvbn03qh366paxb7nrlimcam5p38iqm21dpzgn5zf42syn"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges glmnet IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment]; }; 1060 - bamsignals = derive2 { name="bamsignals"; version="1.24.0"; sha256="1ljrip0jlxjcljqac7vzvwqbcqil5v4f4s4bhpq4akvdkshas6mn"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; 1061 - banocc = derive2 { name="banocc"; version="1.16.0"; sha256="1vhq57v80fxlix5j5rznp37ib82nnhckh1imwc8appjjkya1gv8j"; depends=[coda mvtnorm rstan stringr]; }; 1062 - barcodetrackR = derive2 { name="barcodetrackR"; version="1.0.0"; sha256="13hypkvyjd9kgzi6lrkm0m9rc1yvxvnk8y84i8zqja5nsasb47sf"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; 1063 - basecallQC = derive2 { name="basecallQC"; version="1.16.0"; sha256="1i8pwd5d68v9iwv9rmckqxpppx2pa90w1wrws55l1dpkijvg8zmc"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; 1064 - basilisk = derive2 { name="basilisk"; version="1.4.0"; sha256="1nzbn3f2jzvg3a3m6wgksi4cvamqas2q7csdk4ir7fcirasf536v"; depends=[basilisk_utils dir_expiry reticulate]; }; 1065 - basilisk_utils = derive2 { name="basilisk.utils"; version="1.4.0"; sha256="0qbm6rj6h059hakflbwz4j4f59311jhbk5dnpx11kyixh5pgjk7v"; depends=[dir_expiry]; }; 1066 - batchelor = derive2 { name="batchelor"; version="1.8.1"; sha256="1bkk69b5llkmvmpsnhymwjm2szmzypgszfsw8mak1b5ms5zf8lr0"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; 1067 - bayNorm = derive2 { name="bayNorm"; version="1.10.0"; sha256="1xynvcv1dsqbg96bhr3kajv19i2lad66cqlk2bqh69vaxw5nwkb6"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; 1068 - baySeq = derive2 { name="baySeq"; version="2.26.0"; sha256="0hyc0sl2nf18bz0jxbzim0v41zwh2rnnr7l3p6zkk9wnw5gn7bbc"; depends=[abind edgeR GenomicRanges]; }; 1069 - bcSeq = derive2 { name="bcSeq"; version="1.14.0"; sha256="0z05w7sshvf46gjydfi6gxzfm5klghk6dwm6mypnf0pxrkdvk26i"; depends=[Biostrings Matrix Rcpp]; }; 1070 - beachmat = derive2 { name="beachmat"; version="2.8.1"; sha256="06bpfpddsl49csxrs8hlx5pv0absc2wdcparchf8qqaqydazwci2"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; 1071 - beadarray = derive2 { name="beadarray"; version="2.42.0"; sha256="10gzkkwlnx267fcvrj3f8znvg8lkm3db7p2l11pbhgxh0mbq8qi5"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; 1072 - beadarraySNP = derive2 { name="beadarraySNP"; version="1.58.0"; sha256="0bf4mc59y9mck450i16bpkk6pdkmaxscm7ds1q008892vwzk9h2q"; depends=[Biobase quantsmooth]; }; 1073 - bgx = derive2 { name="bgx"; version="1.58.0"; sha256="18n6j2ihv85rhai5sf5k3mwf9nkc2nl2sinx3rrs6sbl529g4mw4"; depends=[affy Biobase gcrma Rcpp]; }; 1074 - bigPint = derive2 { name="bigPint"; version="1.8.0"; sha256="0yrg9x1a92zmz7j5hk77cph1jg82mkpr7k7qi9fdr6z5nqq6fgz6"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; 1075 - bigmelon = derive2 { name="bigmelon"; version="1.18.0"; sha256="061f0hc4m4nvdr6298pg3inpx1z2bpsm9nlxqs3v7n58q15xyzri"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; 1076 - bioCancer = derive2 { name="bioCancer"; version="1.20.02"; sha256="1phiq5829lq4dx0dfgw4l0z7kwkqrbjb19ldv32b2ay18aax067x"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; 1077 - bioDist = derive2 { name="bioDist"; version="1.64.0"; sha256="1y1x9q9aa76gbhsyfn638rxp5icjvq30fv3a4205xh7g5jwlf6yw"; depends=[Biobase KernSmooth]; }; 1078 - bioassayR = derive2 { name="bioassayR"; version="1.30.0"; sha256="1mlv80w8a7l8cii3dfqvanvh0qdqvcg8c1iiq4xlyvkjxfs64ka1"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; 1079 - biobroom = derive2 { name="biobroom"; version="1.24.0"; sha256="1ybyhmrcvj6k1laxw9bc8jbn533frkzh9k8kl1ibd5pi368rfqzn"; depends=[Biobase broom dplyr tidyr]; }; 1080 - biobtreeR = derive2 { name="biobtreeR"; version="1.4.0"; sha256="0pynx4ps1qxsn13ba6zyg6h5dqlp2y7qish67m7sdjns079zh061"; depends=[httpuv httr jsonlite stringi]; }; 1081 - biocGraph = derive2 { name="biocGraph"; version="1.54.0"; sha256="12bmj9kdlylp02cfwviak7y323ndccl2694rvi4cdg4vsx7v3ya3"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; 1082 - biocViews = derive2 { name="biocViews"; version="1.60.0"; sha256="0pc5ll59vm8a9s1nrdc7p9wk11a52rrz669fsrrqd8qapa8p6wfd"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; 1083 - biocthis = derive2 { name="biocthis"; version="1.2.0"; sha256="08awghsg7q22csb0j9dr8dpb1vkn9gcs9qnhhljxifkw2ahbqia4"; depends=[BiocManager fs glue rlang styler usethis]; }; 1084 - biodb = derive2 { name="biodb"; version="1.0.4"; sha256="1apnbr5p619nsrhd2drm6arj69sw0wijv8ap7dfrndqkffrpbfmx"; depends=[chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; 1085 - biomaRt = derive2 { name="biomaRt"; version="2.48.3"; sha256="096s243yzbhhz3wsm7azml5sznqczmcpi5g0gnb02mah1przczfx"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; 1086 - biomformat = derive2 { name="biomformat"; version="1.20.0"; sha256="1wgshkddxbmpsihpkm0dp7vqp59ns6iqbx574y80n2pxb8dx8sy9"; depends=[jsonlite Matrix plyr rhdf5]; }; 1087 - biomvRCNS = derive2 { name="biomvRCNS"; version="1.32.0"; sha256="0wyzj422smr4m9mswzn9inc1sn86pnia7jmd6k28nd2a7fjyrm16"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; 1088 - biosigner = derive2 { name="biosigner"; version="1.20.0"; sha256="159fbkymn92li7dinsm56nsacjp8wnhsljv7airgs9m82p8wd5sl"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; 1089 - biotmle = derive2 { name="biotmle"; version="1.16.0"; sha256="01smkmbv40yprgrgi2gjnmi8ncqyrlkfdxsh33ki20amcx32nc7f"; depends=[assertthat BiocGenerics BiocParallel doFuture dplyr drtmle future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; 1090 - biovizBase = derive2 { name="biovizBase"; version="1.40.0"; sha256="14jyyg3ggdhaqhp0j4qf6dapykh76fygbaa4lr7czqbc5mr0iw23"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 1091 - biscuiteer = derive2 { name="biscuiteer"; version="1.6.0"; sha256="0f4kk4v2c5diq0fbvyvgwjd1kjk9izr6n9wfrlrr7wbx4pz3c3h6"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 1092 - blacksheepr = derive2 { name="blacksheepr"; version="1.6.0"; sha256="1iiq9hvgwiwnrf4m4mr6xzv76q1278n3j4xdxylybi5q65rdy5mf"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; 1093 - blima = derive2 { name="blima"; version="1.26.0"; sha256="0jwpknr27aypk33nhvx9a3p19rzvfd9qp8d3xi3h0m97xv05nsg2"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; 1094 - bluster = derive2 { name="bluster"; version="1.2.1"; sha256="128zd5vwlhmrkq0bpp1dxnkrcqfz1mjmdjlla4wqbjv7v6yyn6lg"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; 1095 - bnbc = derive2 { name="bnbc"; version="1.14.0"; sha256="1qgb32bhiyiz1v56x9by53s13wanlhp99axay5j91zdvgnmvmdry"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; 1096 - bnem = derive2 { name="bnem"; version="1.0.0"; sha256="0lvqpbn5p9bvl33hyxcsdvjiysvq06ixx74q4j168k8qzpldaswv"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; 1097 - brainflowprobes = derive2 { name="brainflowprobes"; version="1.6.0"; sha256="0nsb1nlzz49xlrmhcyj1jkrynz6bix3ajpq2s26g2wrk9gcaa3vw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; 1098 - branchpointer = derive2 { name="branchpointer"; version="1.18.0"; sha256="1y6id446sjyfa1lpgqzcrnwxxzf0gi52hr33agpwpkpfw5ch4ysb"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; 1099 - breakpointR = derive2 { name="breakpointR"; version="1.10.0"; sha256="1mhnmyjk32la1ihlks73pnsas2zwfhgz8dxja6dirnncq7r36md8"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; 1100 - brendaDb = derive2 { name="brendaDb"; version="1.6.0"; sha256="1lnvgq2wqy40x1yn9j29kkfdw7bbjzy7r06nzdxsc88ml9v88jqs"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; 1101 - bridge = derive2 { name="bridge"; version="1.56.0"; sha256="1d6621kd5x7b9s6l7clbs3vf17aljhxgpj7m8ji0j2swidii7m0x"; depends=[rama]; }; 1102 - bsseq = derive2 { name="bsseq"; version="1.28.0"; sha256="1xpv85hr681kkkilsnasndkszwmzbzq11y0lff4na2ilsm7sqmmi"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; 1103 - bumphunter = derive2 { name="bumphunter"; version="1.34.0"; sha256="0wi38vwfi8qr10x4xifhylxx7vfc6fqvqs649iq7lf0y7islwq2v"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; 1104 - cBioPortalData = derive2 { name="cBioPortalData"; version="2.4.10"; sha256="1yfyfnlnhn8ryzyqbl51lqvsgcf84kqpibn9r24i0hd78y5jbhkm"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; 1105 - cTRAP = derive2 { name="cTRAP"; version="1.10.1"; sha256="0bj1zqdkbv9dww6y8z82bkzirlaqxcsq1x0vm3pbm0ssp48118w0"; depends=[binr biomaRt cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter httr limma pbapply R_utils readxl reshape2 rhdf5 scales shiny tibble]; }; 1106 - caOmicsV = derive2 { name="caOmicsV"; version="1.22.0"; sha256="1h43ml0alpcyafafn8rbm784gr0xpy00942vghqyf3i3y1zq0522"; depends=[bc3net igraph]; }; 1107 - calm = derive2 { name="calm"; version="1.6.0"; sha256="1k25dn8xvnpqhlzzmhjqzcpx3i7mc2avxgd8mwr116jwg4fwk077"; depends=[mgcv]; }; 1108 - canceR = derive2 { name="canceR"; version="1.26.0"; sha256="170v9ln5p399vzh6l4xl28yfbi93kj65m0pb4980mrzpb8199xkp"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; 1109 - cancerclass = derive2 { name="cancerclass"; version="1.36.0"; sha256="0vk2ayqw5hia97k88g4zbjyc38ck0pay8lbn2hwrhr69lmpwz4zc"; depends=[binom Biobase]; }; 1110 - casper = derive2 { name="casper"; version="2.26.0"; sha256="1lhhsw26wqhcj4g2r30wgjhizs63i6mssxlvjxv8a7h6170wazxk"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; 1111 - categoryCompare = derive2 { name="categoryCompare"; version="1.36.0"; sha256="1r1r4hvg3z6c1vkhhsh0c5j538z4msvndx6mns3cxdv7fm11zg05"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; 1112 - cbaf = derive2 { name="cbaf"; version="1.14.0"; sha256="0q2lr9d64wqy5jjcfw9821wzq1dxqvga2mdgwf6i9lsxdxqvw83r"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; 1113 - cbpManager = derive2 { name="cbpManager"; version="1.0.2"; sha256="05mb4rzw90dfywlzfva1451kz74ziya945d691lzz3agxd7xnlfs"; depends=[basilisk dplyr DT htmltools jsonlite magrittr plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; 1114 - ccfindR = derive2 { name="ccfindR"; version="1.12.0"; sha256="1xkx013mv17kyvsgvqbjwy30mf4sasghg6kxka1m7z3jk7l6zx2b"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1115 - ccmap = derive2 { name="ccmap"; version="1.18.0"; sha256="1v9ynyb35xafycdwngh2k2i3xshap3ibrxm1zssv7v2svl9mvfxa"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; 1116 - ccrepe = derive2 { name="ccrepe"; version="1.28.0"; sha256="1dwxp0zlz7jzy8fjj6p58j6skaz3bgcbhky5a69q48d2isx6kqc3"; depends=[infotheo]; }; 1117 - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.4.0"; sha256="1ywm7lbbwr9d6rar8lmlwsxdmwbnam8p1gjlqcz0xlvm125gm5c0"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; 1118 - celaref = derive2 { name="celaref"; version="1.10.0"; sha256="013dlqscxyzvdp91b90bjiflw2ckcc4nn2h5rnsbqaq9csgppvg5"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; 1119 - celda = derive2 { name="celda"; version="1.8.1"; sha256="085ql88sp1dhgkjvakh11vm790bnfmdcp9qc092hncni7x06s35x"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; 1120 - cellHTS2 = derive2 { name="cellHTS2"; version="2.56.0"; sha256="0lvnnhz3zjxpz4cj38pj89z6agvlhi83ivxp14f99c1m5pvwnh4a"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; 1121 - cellTree = derive2 { name="cellTree"; version="1.22.0"; sha256="1yw0aij8p47s65x8qpd6hg2qii4cnga3cm2mzfnjg41ln5m4g0f1"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; 1122 - cellbaseR = derive2 { name="cellbaseR"; version="1.16.0"; sha256="0vrl0bdsf5x3anm7y57kaf5vh15flc7f6yb7gp8hcnj6sd44967h"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; 1123 - cellity = derive2 { name="cellity"; version="1.20.0"; sha256="1p602bfzmiwfza511g5g7z6x0zscwld99dl1cj6larac3ycjrrw7"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; 1124 - cellmigRation = derive2 { name="cellmigRation"; version="1.0.0"; sha256="1yivxigc9pcsg8r5r4lwg0yabdrvdajpkk8bkwgv2yw33865jmj3"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; 1125 - cellscape = derive2 { name="cellscape"; version="1.16.0"; sha256="1b6ni9846avbs8syipby8smswj7rp6fxqca4lgjxlbsxw2zmnwz3"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; 1126 - censcyt = derive2 { name="censcyt"; version="1.0.0"; sha256="1bp392ac9494gbppwjhllqw92l5ifrrc1wjgbkpk7i3mh11zy071"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; 1127 - cghMCR = derive2 { name="cghMCR"; version="1.50.0"; sha256="0l95ar1lz06ijqz6wnnlc0za6qfcsnxq6j0mjypgpg3hkin41q4i"; depends=[BiocGenerics CNTools DNAcopy limma]; }; 1128 - chimeraviz = derive2 { name="chimeraviz"; version="1.18.0"; sha256="17xn18c2fjc6r1vjr5awhacpg5awy413fif0das8ks2jbcb93jxw"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; 1129 - chipenrich = derive2 { name="chipenrich"; version="2.16.0"; sha256="1qqb3ayckwj9pagvsfcqw5rc3hrhjwsjpc3m5j60gbvnm0hk3fpi"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; 1130 - chipseq = derive2 { name="chipseq"; version="1.42.0"; sha256="078p9h0zghlhpd6cr54nww1mk7q97imx8yqfayw5m2yq4097ivbi"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; 1131 - chopsticks = derive2 { name="chopsticks"; version="1.58.0"; sha256="10rwb9kg8r50g2qp5rnx16arrx5ia91hyvf988yn3as52ka83q1d"; depends=[survival]; }; 1132 - chromDraw = derive2 { name="chromDraw"; version="2.22.0"; sha256="0g8ymy120jssxlgq42zlqllla3c71y9sywdap7vkr9ghfvzl4vv8"; depends=[GenomicRanges Rcpp]; }; 1133 - chromPlot = derive2 { name="chromPlot"; version="1.20.0"; sha256="1l4fwv1wyda3xk49izprnv7p8x8z1q7x0zwr5207chwk5s4njcng"; depends=[biomaRt GenomicRanges]; }; 1134 - chromVAR = derive2 { name="chromVAR"; version="1.14.0"; sha256="1birmwvcvl2hb5ygbsb3wvbdfayqqs53j1bks46cbkq7ybigfyar"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; 1135 - chromstaR = derive2 { name="chromstaR"; version="1.18.0"; sha256="09cqzylci4x4i7wn4ckcqhdlljbzfrp08wdvkkc5vrdldnj9pq5h"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; 1136 - chromswitch = derive2 { name="chromswitch"; version="1.14.0"; sha256="15xakwdrb65grpg9fr7sa8v7z1n9x5fsjj28crwjyb34m7br2qgj"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; 1137 - cicero = derive2 { name="cicero"; version="1.10.1"; sha256="1y34cm52bv1v2hr7sz8zjzxwd4wng7v75avz5wx45l0ld54z9l10"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; 1138 - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.6.0"; sha256="1hif40vfg2lkbyf6abbkxbdm3b1biw6gxnh6ca2sydvi3y5l2ys2"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; 1139 - cisPath = derive2 { name="cisPath"; version="1.32.0"; sha256="1glhyiy1yibn3a3d23p10b91a9cmzzl1g5b31m4djjiil3qsw389"; depends=[]; }; 1140 - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.30.0"; sha256="0ibm1fj3dni734ibfzmbdhmr9sarpxfydg4mg95vs2w1rqy55ry3"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr stringr]; }; 1141 - cleaver = derive2 { name="cleaver"; version="1.30.0"; sha256="0cw58dhgcrg7nf0rn93fn015c1kfglr4ybhffj51hyg34wd8k4xl"; depends=[Biostrings IRanges S4Vectors]; }; 1142 - clippda = derive2 { name="clippda"; version="1.42.0"; sha256="1k9sjgnxk2qg6idcsx9z1wyd24ja507wm7slq6jrvdbslr6ap48i"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; 1143 - clipper = derive2 { name="clipper"; version="1.32.0"; sha256="17sfaz2sic0n2qs2d2mj6206y2idhrpm0mqas7bzsi95wj6qhs3x"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; 1144 - cliqueMS = derive2 { name="cliqueMS"; version="1.6.0"; sha256="0ian0lqjp6p4lxmxnqk5l5kw2j3h2lff3widz5cfqr71421fn92q"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; 1145 - clonotypeR = derive2 { name="clonotypeR"; version="1.30.0"; sha256="1siisyqsczjgqp0rm7r9n4j2r52h1g4yi8p7j33w7k8kw4ay03jm"; depends=[]; }; 1146 - clst = derive2 { name="clst"; version="1.40.0"; sha256="1lqj36567bahb58naygqhpf09lid0whqma6rilvzg68l6px06nz4"; depends=[lattice ROC]; }; 1147 - clstutils = derive2 { name="clstutils"; version="1.40.1"; sha256="0z03ciq2gyrziwg4bmsbf9f0kwrl9h64wnvpnx81f5xzjbwlqzsh"; depends=[ape clst lattice rjson RSQLite]; }; 1148 - clustComp = derive2 { name="clustComp"; version="1.20.0"; sha256="18kq0s9cv4b5dy28cg104simyykka6gx9bfb1nhgz4z6ljb65ccn"; depends=[sm]; }; 1149 - clusterExperiment = derive2 { name="clusterExperiment"; version="2.12.0"; sha256="1fhmayciwn1m124b4dcs3gzbghgk9f7a7qmjnvvxc958cywcwkx5"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; 1150 - clusterProfiler = derive2 { name="clusterProfiler"; version="4.0.5"; sha256="1dccrl2ffhgmv3iqlmpln7z86ahpf0j9ma194fnknsgi3cd9rhrl"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; 1151 - clusterSeq = derive2 { name="clusterSeq"; version="1.16.0"; sha256="07l7l2s2iha0n6n76j6x913vlzfxmfg9zmgs0qi8hxzy0y2wz8s3"; depends=[baySeq BiocGenerics BiocParallel]; }; 1152 - clusterStab = derive2 { name="clusterStab"; version="1.64.0"; sha256="1cra5fjd6sygybfa04af8p01wzl0y5cfx17bias4kdjk0blvgfzx"; depends=[Biobase]; }; 1153 - clustifyr = derive2 { name="clustifyr"; version="1.4.0"; sha256="1bj4ar7gnzmzq4jrkrxvgak8fdzjm2208ld9bf7zw716300qwajz"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; 1154 - cmapR = derive2 { name="cmapR"; version="1.4.0"; sha256="0l0fqkrp5hjw4ggshnjpc8bd5m8m42xzprc0cbb7fm5l8qqyavqa"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; 1155 - cn_farms = derive2 { name="cn.farms"; version="1.40.0"; sha256="1hhh104jwac373vqjsp6fvq7ssqswlx7p53mjm015gv9j58q5z5d"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; 1156 - cn_mops = derive2 { name="cn.mops"; version="1.38.0"; sha256="178dayy7bjw3gav2g6ngnjncgrp204jgd68pk7x0m4rxagadiz27"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; 1157 - cnvGSA = derive2 { name="cnvGSA"; version="1.36.0"; sha256="119s8lqcpbvzq4ry0pmsrny2wdvx62c81k7v4ag9x36b8x1m9qyg"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; 1158 - coGPS = derive2 { name="coGPS"; version="1.36.0"; sha256="00j1p1rxdhpws9gvwvk2jglzfg23y98k1l5cn24slh0wldbsaa1p"; depends=[]; }; 1159 - coMET = derive2 { name="coMET"; version="1.24.0"; sha256="1n9c8hpspb3fyvvcmr88a3iz1f4hpq2z80dmyj5xndl2yz1454b1"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; 1160 - coRdon = derive2 { name="coRdon"; version="1.10.0"; sha256="1dsyv4gzd3rm339z3wqxq12cqyy01jfhvyq4r58r84nl4qzss6wl"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; 1161 - codelink = derive2 { name="codelink"; version="1.60.0"; sha256="14di10nyan870hl0b51aymm455a6z4izncjbh2i7am6k6qgaygna"; depends=[annotate Biobase BiocGenerics limma]; }; 1162 - coexnet = derive2 { name="coexnet"; version="1.14.0"; sha256="03a0ja03ribsq4cy89hgzf9vv9afk1bzr9sm0gp8jv7iw9pxicp5"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; 1163 - cogena = derive2 { name="cogena"; version="1.26.0"; sha256="0aq69sk4npfa0ycs3y48r4gbfzd1xmhxddyrndvqwa9l5ib7ns67"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; 1164 - cola = derive2 { name="cola"; version="1.8.1"; sha256="12h5vsahh3hgdxjlgfssqqk0kllrhkza3schbgj0if6lmij23wg0"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; 1165 - combi = derive2 { name="combi"; version="1.4.0"; sha256="02zjcgx3km03rjmpkdrj67isp8qk8bl88pfyn3vfbaw9kmlxj003"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; 1166 - compEpiTools = derive2 { name="compEpiTools"; version="1.26.0"; sha256="0y80b0vi5jsakp6ba119gj8lc0v4rkk58ikgx6mh8hvh35002mhd"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; 1167 - compartmap = derive2 { name="compartmap"; version="1.10.0"; sha256="10v6fiqnpx7y3clna3q50brxzslyw96x9gwp9sg6k22rdi8pyzf6"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; 1168 - compcodeR = derive2 { name="compcodeR"; version="1.28.0"; sha256="0hl7lj9k9sxrn327fzvf8mkx3mnr041zn6lxcbahfffix6lrpzc5"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; 1169 - conclus = derive2 { name="conclus"; version="1.0.0"; sha256="1g7snf1s3kl0g4aikn9ly8igj0fk8qbngzqb5wy665g6jvvacvw5"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; 1170 - condiments = derive2 { name="condiments"; version="1.0.0"; sha256="0brjjmx1brgx4rwb5wn3aj9209lbz2dpkhz6vrxdbk5v7n2vgbny"; depends=[BiocParallel dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; 1171 - consensus = derive2 { name="consensus"; version="1.10.0"; sha256="04brkizq2p7lymd380fdw5x4d6hxh15mplh58pmwz3rh8m3za77z"; depends=[gplots matrixStats RColorBrewer]; }; 1172 - consensusDE = derive2 { name="consensusDE"; version="1.10.0"; sha256="0b98zzpskbdcl6lgwmxgs2rr6r6c5y3dxr3wggk8d0g7lmxicg0q"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; 1173 - consensusOV = derive2 { name="consensusOV"; version="1.14.0"; sha256="0cjwpcnsp7bajpi481lwp414kksfjd5kairmya20kxi5msf34yxw"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; 1174 - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.20.0"; sha256="14rhi0jq67q88ladi3yycgnxskih11097szlb4gv9gp3rhdvddjd"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; 1175 - contiBAIT = derive2 { name="contiBAIT"; version="1.20.0"; sha256="14i3pk84ipg398bs876jqv1fjyaryz0422bj6174jiz4syz2gypq"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; 1176 - conumee = derive2 { name="conumee"; version="1.26.0"; sha256="0cgf75zsw9wnc735njshanvdhjm5wb2sph80z38fm3q3mikf1w42"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; 1177 - convert = derive2 { name="convert"; version="1.68.0"; sha256="0r8vd1as3ci4xn8w3lk1j529lms2zxq7c7m5lcycjyzbjnv7xs03"; depends=[Biobase limma marray]; }; 1178 - copa = derive2 { name="copa"; version="1.60.0"; sha256="0pm90l8ky3gcpy2wsai0vlxq84nymywn7f63d7grz7j50v3csqqc"; depends=[Biobase]; }; 1179 - copynumber = derive2 { name="copynumber"; version="1.32.0"; sha256="03pvjzjrcsbjfw3855s3whfzin45vaipy7cahnj6fywdysvh8hps"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; 1180 - corral = derive2 { name="corral"; version="1.2.0"; sha256="06nkyqz0rp1lbcbak0iyyzzy43qskdljh5v2ld4ggc641pwipl8r"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals SingleCellExperiment SummarizedExperiment transport]; }; 1181 - coseq = derive2 { name="coseq"; version="1.16.0"; sha256="1ai2y7nrcr61as33bix5pzpfhbxxa0m5lb14kxbgmdjpc2n43mxs"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; 1182 - cosmiq = derive2 { name="cosmiq"; version="1.26.0"; sha256="1mj6l1ys69ncykn425iihxixp9yp7r3skhk6fy8jsn3i6zpdsm6d"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; 1183 - cosmosR = derive2 { name="cosmosR"; version="1.0.1"; sha256="0zsp02h11zmava8bnvncdy2xcq5xxp42b0vpqbhrwkma0z4izzlf"; depends=[AnnotationDbi biomaRt CARNIVAL dorothea dplyr igraph org_Hs_eg_db purrr readr rlang stringr tibble visNetwork]; }; 1184 - countsimQC = derive2 { name="countsimQC"; version="1.10.0"; sha256="0kjjxw3n3m25fryafzbi807kcq9jin4fqkjxpfgdqniwwk0vhd1m"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; 1185 - covEB = derive2 { name="covEB"; version="1.18.0"; sha256="0cwik99d5k92pmh16fb2l08l863k61xzzcbxadllkwyar8bla727"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; 1186 - covRNA = derive2 { name="covRNA"; version="1.18.0"; sha256="1ncncif3vmszi4l3s0y37af7n7py2qy68j9wnksrysz8rfj6lq73"; depends=[ade4 Biobase genefilter]; }; 1187 - cpvSNP = derive2 { name="cpvSNP"; version="1.24.0"; sha256="1f4bchxn8xd7mzzdhymwhwc1ay69ak17psrhvgibarphfa68car3"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; 1188 - cqn = derive2 { name="cqn"; version="1.38.0"; sha256="1aqyzi6cr681xl7mc1m7a6ni51i5132sisw7gjanbxq2b3czmz25"; depends=[mclust nor1mix preprocessCore quantreg]; }; 1189 - crisprseekplus = derive2 { name="crisprseekplus"; version="1.18.0"; sha256="17pvgrkvsyp1klvndz7xzhvd6kwilnf56zv1gx1jk54ildw094yi"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; 1190 - crlmm = derive2 { name="crlmm"; version="1.50.0"; sha256="0xd273pjchb0rbykqnn7jwz2bz6qisd7i76gmf8qpzziqdm417p1"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; 1191 - crossmeta = derive2 { name="crossmeta"; version="1.18.0"; sha256="0p8gmqxsiyc0c9qgwhhvq60m6936ngsx5ijvxy2vwv4chprgmg5c"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DESeq2 DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RColorBrewer RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets statmod stringr SummarizedExperiment sva tibble XML]; }; 1192 - csaw = derive2 { name="csaw"; version="1.26.0"; sha256="0br85155fcj2m9hbf7g94j27qp3ldgmf89ahb8mygcvwqj44f127"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; 1193 - ctc = derive2 { name="ctc"; version="1.66.0"; sha256="1v8aysvy6a3r1iafc3xvk885c128kb3pb9zpcdhdjcn0by96k8hh"; depends=[amap]; }; 1194 - ctgGEM = derive2 { name="ctgGEM"; version="1.4.0"; sha256="04s73n42ch4i2rccq1affglwv4lkajy455pbavrycl27sabi0lz7"; depends=[Biobase BiocGenerics HSMMSingleCell igraph monocle sincell SummarizedExperiment TSCAN]; }; 1195 - ctsGE = derive2 { name="ctsGE"; version="1.18.0"; sha256="043qva9njsivp6r2cplaic0idgjf3jxz2js2yxqnj8xr1n8jlhbl"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; 1196 - cummeRbund = derive2 { name="cummeRbund"; version="2.34.0"; sha256="1avvmvrmldbscc7xd6a6k22xjykbzafvqf87wh5z9rx3qlzswsjx"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; 1197 - customCMPdb = derive2 { name="customCMPdb"; version="1.2.0"; sha256="0ihmkqz1v6gfbv2v0igwvgi4gygbx997vrh84sx487vap0d62wr7"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; 1198 - customProDB = derive2 { name="customProDB"; version="1.32.0"; sha256="0qr3i826vyrhs1kqbavv6hsjj2bgnyv63nn9xdiqsakh2xbgzrph"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; 1199 - cyanoFilter = derive2 { name="cyanoFilter"; version="1.0.0"; sha256="05wfksk5vkfd46fh0nrlsfn9c53728jy6h037z45fvnl8jy7f9kf"; depends=[Biobase flowCore flowDensity GGally ggplot2]; }; 1200 - cycle = derive2 { name="cycle"; version="1.46.0"; sha256="00p21wzhk6pc3avgd2z2r7kabsg7i1m08nbnh2f3djz8sdnqychr"; depends=[Biobase Mfuzz]; }; 1201 - cydar = derive2 { name="cydar"; version="1.16.0"; sha256="0ih9mxbpyvfqgk06qb61i1v0sv0j8zfkbikp7630p3ib4g9i53xm"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; 1202 - cytolib = derive2 { name="cytolib"; version="2.4.0"; sha256="0wl7zqwv0i38dfzqfsz40n3mcbxi38ffn1rbd5pm9s7hq16zr4nv"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; 1203 - cytomapper = derive2 { name="cytomapper"; version="1.4.1"; sha256="0gl4slw5x54gz27y5rcrlddhym4lw6jbpi1pvdi5f261nl2symjk"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; 1204 - daMA = derive2 { name="daMA"; version="1.64.0"; sha256="1aqgxzr323hkvh6d3b130xqhkzmz7awmwwdq85hgmyvywwyjk1qz"; depends=[MASS]; }; 1205 - dada2 = derive2 { name="dada2"; version="1.20.0"; sha256="1wb9knxyiv21q8iia72k173qilw55s7i4sc8l1r3s9rg5k7jy945"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; 1206 - dagLogo = derive2 { name="dagLogo"; version="1.30.0"; sha256="10bcs0bd1ba418a0jnfnxsfjm0678rq475c75ih24xb1ws54yv1a"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; 1207 - dasper = derive2 { name="dasper"; version="1.2.0"; sha256="1zs0v6yqrg2cd5qvpbcwa7g7zc31skj8gwgjxyzg3kj4nvmfpfmw"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges magrittr megadepth plyranges readr reticulate S4Vectors stringr SummarizedExperiment tidyr]; }; 1208 - dcGSA = derive2 { name="dcGSA"; version="1.20.0"; sha256="183r6sjl4y0x1wyh3fbaxvxl447vjig06m7k0wq6shqhfgca96ag"; depends=[BiocParallel Matrix]; }; 1209 - dcanr = derive2 { name="dcanr"; version="1.8.0"; sha256="1bmqcap8kiiprgcpszfn2fsqnkq5142pydg5vdm139qmhjci74cn"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; 1210 - dce = derive2 { name="dce"; version="1.0.0"; sha256="1wzx7wsk1wq142br7jl2pd49mqg542dgh3zfsqilal2zpdmdi9iv"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; 1211 - ddCt = derive2 { name="ddCt"; version="1.48.0"; sha256="1d18bw80s9lhcvvprll1wihybr9z3m3brza2nw4gjlaihpf7ldab"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; 1212 - ddPCRclust = derive2 { name="ddPCRclust"; version="1.12.0"; sha256="093xrvrrxsh34w4w4ji9kcgxrz9wkjriy6y7azhyq5d5z9r7yab7"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; 1213 - dearseq = derive2 { name="dearseq"; version="1.4.0"; sha256="1cg6lk9nll9h549d1s5126z4rc4zdawzfzqi2b18js8lml4ihzsj"; depends=[CompQuadForm ggplot2 KernSmooth matrixStats pbapply statmod]; }; 1214 - debCAM = derive2 { name="debCAM"; version="1.10.0"; sha256="14n2pn0r7j7vn0rns7y56kzzvw4db9b15543diqli8xy2xdm7wnz"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; 1215 - debrowser = derive2 { name="debrowser"; version="1.20.1"; sha256="0w96bix0iv38r9qrznlg47rvrd7cd36di9j08vmp0dn50zcsxm6d"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; 1216 - deco = derive2 { name="deco"; version="1.8.0"; sha256="1bsmx5jblfgd12w6kvf7bb1zixyh3sb0zkjw54ar39yjfk86nyw8"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; 1217 - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.8.0"; sha256="1bq42fipc6ahldcdba9yfk7m851y2jrf62k43jhwrffacrl9h2s9"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; 1218 - decontam = derive2 { name="decontam"; version="1.12.0"; sha256="1ynncsv2rny05696h5qpnb03wpfx0lhcs5b6fj7kijqfpfghbfza"; depends=[ggplot2 reshape2]; }; 1219 - decoupleR = derive2 { name="decoupleR"; version="1.0.0"; sha256="1i3y0l2sjmp60bd40qx57qf52w1dw0151m3kqmrmgv5pbbdc6ik5"; depends=[broom dplyr GSVA magrittr Matrix purrr rlang speedglm stringr tibble tidyr tidyselect viper withr]; }; 1220 - deepSNV = derive2 { name="deepSNV"; version="1.38.0"; sha256="0zz56hf417m7bgg2g2wpbaik30pi6h2nam1n5bviqgdn4mv8n0bs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; 1221 - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.6.0"; sha256="1kpya8zzvivpmv1q3wqi8apr1hm6niwc5ibkggsbb5r5887s5fp2"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment]; }; 1222 - deltaGseg = derive2 { name="deltaGseg"; version="1.32.0"; sha256="12lam0xfshqp214xls7j29qyqizirdmd3lnanpr6cgij0k6dc5yn"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; 1223 - densvis = derive2 { name="densvis"; version="1.2.0"; sha256="0lnrb4j22nyyk1hv0imj1pci5kg2xrqql323n0p11b5i5n5054nq"; depends=[assertthat basilisk Rcpp reticulate]; }; 1224 - derfinder = derive2 { name="derfinder"; version="1.26.0"; sha256="1bqzm3zcq4nhngxdfdp7sahylx77g5xwdiqbidxycs2y1p75842v"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; 1225 - derfinderHelper = derive2 { name="derfinderHelper"; version="1.26.0"; sha256="1w5dxsfx3lspl7qiijf6xbm9y2zzrcb8kfvhkwykcf6b98avrz5b"; depends=[IRanges Matrix S4Vectors]; }; 1226 - derfinderPlot = derive2 { name="derfinderPlot"; version="1.26.0"; sha256="04agszbqbr39898q3dbdx4shgbb162h92ipzv17k7gs880cpxm2l"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; 1227 - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.74.0"; sha256="1vll26w3vj8f4nhshx7z1pdpf3xsbakspdgfczm6ngc80gi6nc10"; depends=[minpack_lm]; }; 1228 - diffHic = derive2 { name="diffHic"; version="1.24.1"; sha256="08df9rvk5rzfjwmzqsa57p3jbyg8gpp5fg5rv0lzdln22sp7jk6c"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; 1229 - diffUTR = derive2 { name="diffUTR"; version="1.0.0"; sha256="134h5p216biqvgkcmr5mk0r70b1nn798cmd0v40clx9bxicjfjpn"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; 1230 - diffcoexp = derive2 { name="diffcoexp"; version="1.12.0"; sha256="06b8nx6asrfikhmndkan5pvag0p7a948dl7v52rmiihzb2v54wn8"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; 1231 - diffcyt = derive2 { name="diffcyt"; version="1.12.0"; sha256="08k1i2pp8naxr3znay4x2zilc3x6xdda1155wxjyjwv58qgh23z3"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; 1232 - diffloop = derive2 { name="diffloop"; version="1.20.0"; sha256="0kaagnlw5z5dc70f83hrp8d3hb6dzzsgbkb6q5b3ks9halm60cd3"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; 1233 - diffuStats = derive2 { name="diffuStats"; version="1.12.0"; sha256="00lp6ck0znhdj2vy0qxl6vvjzyz3nn0v3qsn59jgcffk2l31dksy"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; 1234 - diggit = derive2 { name="diggit"; version="1.24.0"; sha256="03vj91njfkr5nhiqwm7v3j1aq6ba2cbi9mg7acmpawafd8ngjfk9"; depends=[Biobase ks viper]; }; 1235 - dir_expiry = derive2 { name="dir.expiry"; version="1.0.0"; sha256="05mk7iwzay1xrgvssbz7nyl5d1n03syalbk18lmjmbx05dy0cjik"; depends=[filelock]; }; 1236 - discordant = derive2 { name="discordant"; version="1.16.0"; sha256="17an31wai4nk5jxip9h8k4jv20wpd97c1jzcy8bcyfkz4w5yywwv"; depends=[Biobase biwt gtools MASS]; }; 1237 - distinct = derive2 { name="distinct"; version="1.4.1"; sha256="0yi3l990fk21ilrfkipdgzqvr9kl3a67xsad10f929gw0zpplxy7"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; 1238 - dittoSeq = derive2 { name="dittoSeq"; version="1.4.4"; sha256="05i1amfpy3vzvhxv3dn66rhcw09c8ip499pnj7swglvyxfmlfw8p"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1239 - divergence = derive2 { name="divergence"; version="1.8.0"; sha256="1lg7bz9pqsnn8h69fh30xmsynp47dg407kifdfq0kq6rxj38gwrf"; depends=[SummarizedExperiment]; }; 1240 - dks = derive2 { name="dks"; version="1.38.0"; sha256="134jqcd9b0yg8in77g8wjvb8wqm5w4vfqh93hp05w95pjxks7d57"; depends=[cubature]; }; 1241 - dmrseq = derive2 { name="dmrseq"; version="1.12.0"; sha256="1jbbjifjsnk9261wqmdwkbzj1w52g6vaanpk4w816ri0fap587m4"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; 1242 - doppelgangR = derive2 { name="doppelgangR"; version="1.20.0"; sha256="1yrxrdz4nplpx7ljz6662mc6s0vspmy5n91rb71q4iy9qpbkw5i0"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; 1243 - doseR = derive2 { name="doseR"; version="1.8.0"; sha256="0hw0p070scagl3fimfh0wq1k4hlbmw429yh2sgi5dyq2c0ml19i9"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; 1244 - dpeak = derive2 { name="dpeak"; version="1.4.0"; sha256="07hmlbwkbaj12ba0kmi0dnnzsbj7l36biajrbml483rsxsxiqkfi"; depends=[BSgenome IRanges MASS Rcpp]; }; 1245 - drawProteins = derive2 { name="drawProteins"; version="1.12.0"; sha256="00acjvxxf2vhab7km2pqjzlkw23yby92a0xrhl2hr2qr6miy3y2g"; depends=[dplyr ggplot2 httr readr tidyr]; }; 1246 - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.0.2"; sha256="19c6shb0js0dzxfqraycxj9pqdxlyh7qy4hw3yklz9rln6dr1k0c"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; 1247 - dualKS = derive2 { name="dualKS"; version="1.52.0"; sha256="13wdb5qmbm6zbf1930x30qvkqb73v28ww3z0nq4n93ghyyl0hidb"; depends=[affy Biobase]; }; 1248 - dupRadar = derive2 { name="dupRadar"; version="1.22.0"; sha256="1gxxjmr97r2qn356r55yqzp0kzgy7k67ikb2m9fvzfsbf5mcwkna"; depends=[Rsubread]; }; 1249 - dyebias = derive2 { name="dyebias"; version="1.52.0"; sha256="0a6wwl3018lsridj5nc9s7zc31dv7mja88rgsv5fd35ipwl27avm"; depends=[Biobase marray]; }; 1250 - easyRNASeq = derive2 { name="easyRNASeq"; version="2.28.0"; sha256="1aqka9kawyhl6hl7c01dfsrwpmpqmkx3gh06ciqh11f0nq9xascb"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; 1251 - easyreporting = derive2 { name="easyreporting"; version="1.4.0"; sha256="037ih62gx8drg5y97fkk451wwjyjkpiff5r705nrdjfzisrp63rd"; depends=[rlang rmarkdown shiny]; }; 1252 - ecolitk = derive2 { name="ecolitk"; version="1.64.0"; sha256="189yc8kkz5916z28q2wxxjsfl8qpw2j8wla686kr764ah2mhdsi8"; depends=[Biobase]; }; 1253 - edge = derive2 { name="edge"; version="2.24.0"; sha256="1n1nk7fba7612bk3581ja8grrgllnd81lg3lh1p7nw92n1gzsqsg"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; 1254 - edgeR = derive2 { name="edgeR"; version="3.34.1"; sha256="0f6apsjq6cn794840ls9y2n0hix1gyhvkdgxch1v22qr4sq0c86k"; depends=[limma locfit Rcpp]; }; 1255 - eegc = derive2 { name="eegc"; version="1.18.0"; sha256="0c9farjrzprqv120ivx3lax70zaimzid70my5d7020da01lg1y02"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; 1256 - eiR = derive2 { name="eiR"; version="1.32.0"; sha256="1gz78xw3cwbb03s02gr5lzghnvx19afxw3ylk0ijm4qhfqbw7m0c"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; 1257 - eisaR = derive2 { name="eisaR"; version="1.4.0"; sha256="198x3h2r4hicad2dz892z8rknn3jwk4qskl3m7a6pqf5swqhsg5c"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; 1258 - enrichTF = derive2 { name="enrichTF"; version="1.8.0"; sha256="0kbrhd98pdx0xd6zninipmly2i4zax5vwldw0mmxp6ipbgwcv54y"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; 1259 - enrichplot = derive2 { name="enrichplot"; version="1.12.3"; sha256="0a4v7ymy9jn66iw093jngzszkvr2mfzzlxp0h6nnvlbnbvqqzgm3"; depends=[cowplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext]; }; 1260 - ensemblVEP = derive2 { name="ensemblVEP"; version="1.34.0"; sha256="0zg5g7hvi965mbxxqkxli1pbk88yz9a3bfgmdjawh5blfznmyqw5"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; 1261 - ensembldb = derive2 { name="ensembldb"; version="2.16.4"; sha256="15yllkxr6sj5pfvkvv285nk3q5374nzq1iz8ywmnrq910k3xagd8"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; 1262 - epiNEM = derive2 { name="epiNEM"; version="1.16.0"; sha256="0dw998b5mgf20wzwgvq4xv6sw47jv96wa266ldg6z9m8s4cl0mr2"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; 1263 - epialleleR = derive2 { name="epialleleR"; version="1.0.0"; sha256="114ymmcxhpj4nqrgk3962mc6skb580hpchqsci6kq81h2lq0yl6v"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rsamtools stringi SummarizedExperiment VariantAnnotation]; }; 1264 - epidecodeR = derive2 { name="epidecodeR"; version="1.0.2"; sha256="08h6pdnyamxn6m1ps7abl2wkjj1m58gjm0718zpj6452yrrjaa6g"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; 1265 - epigenomix = derive2 { name="epigenomix"; version="1.32.0"; sha256="08hdlrz9i6xkb076nvv8gz0i6hjfklrlyln9d7fzhnfi5vpmyyn8"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; 1266 - epigraHMM = derive2 { name="epigraHMM"; version="1.0.8"; sha256="1s2k123hczf32v22vq8qhm84mmryvsmbabgpylm1azgwz6fybc1h"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; 1267 - epihet = derive2 { name="epihet"; version="1.8.0"; sha256="02xnmxwhm0l2m8mxnfgv1d8mlmyy1pjlspglq88pnbyr0kr0zcyy"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; 1268 - epivizr = derive2 { name="epivizr"; version="2.22.0"; sha256="08qk680pn89whc5vbnrq6ras51sygccnqnlixvyijxid0gbzfp8h"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 1269 - epivizrChart = derive2 { name="epivizrChart"; version="1.14.0"; sha256="19gighqj05cbn7jj9mfqxi578al4ig2562gcsfh1l7cskvkvv85s"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; 1270 - epivizrData = derive2 { name="epivizrData"; version="1.20.0"; sha256="17f8yy7m3d8abvzhrb5v9zmw2ka77a4da63f1ma8zia3dfy9cdzz"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; 1271 - epivizrServer = derive2 { name="epivizrServer"; version="1.20.0"; sha256="19ymagvlglg4pv4y67sgs0j4dq6gqr0f6ha7g3dawnm7mvk6fv18"; depends=[httpuv mime R6 rjson]; }; 1272 - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.20.0"; sha256="1sfnc2h801lzqxkr4i4ssn0lqjs7w9yl8zcqg3mz1swymnbzy13z"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; 1273 - erccdashboard = derive2 { name="erccdashboard"; version="1.26.0"; sha256="1pz757q41j6fgcb4asja9j6s9a2bfnfs456nssacw5d68fbj5fk1"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; 1274 - erma = derive2 { name="erma"; version="1.8.0"; sha256="02a9702sasgighwb0f9ii8n30ngfx1hjnppaay1f5zsigr8vqalz"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; 1275 - esATAC = derive2 { name="esATAC"; version="1.14.0"; sha256="0cwx61068r2bfbmn79j5fawyjanj58xp6pzdz5hqjvwfbn7g4dvs"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; 1276 - escape = derive2 { name="escape"; version="1.2.0"; sha256="0rj6943c0ff2lp1g0fq1xawzsd3kbhyd1wp8minrcaw92biy5wik"; depends=[BiocParallel dplyr ggplot2 ggridges GSEABase GSVA limma Matrix msigdbr SingleCellExperiment]; }; 1277 - esetVis = derive2 { name="esetVis"; version="1.18.0"; sha256="18bjx8gxjsn3snha0s55w2pgaiv78hllris070cai3qjj579iczr"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; 1278 - eudysbiome = derive2 { name="eudysbiome"; version="1.22.0"; sha256="0kv614zvpp00fp0g0myrcamw2cx90h3hmq418jcapzybadi3i0ag"; depends=[Biostrings plyr R_utils Rsamtools]; }; 1279 - evaluomeR = derive2 { name="evaluomeR"; version="1.8.0"; sha256="10cnj9igaws0cw9739z7ngmphln8fw8ziafczdwl70fd0hr97k3l"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; 1280 - exomeCopy = derive2 { name="exomeCopy"; version="1.38.0"; sha256="16bnydbfrrp7xqcg0krdzbcf7pw5y1r9lc7hl611lvvms2fva29q"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; 1281 - exomePeak2 = derive2 { name="exomePeak2"; version="1.4.2"; sha256="08zr4q7zcfwy18dryar5di4qdjmnsiypll660i20wiq4z2l03646"; depends=[apeglm Biobase BiocGenerics BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1282 - fCCAC = derive2 { name="fCCAC"; version="1.18.0"; sha256="12ijks6hz63ys4z98ky1bqwjraz9f98cqllw2w6w3q8jjg6i9c2n"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; 1283 - fCI = derive2 { name="fCI"; version="1.22.0"; sha256="0hp6r8ihwrwgp26sbx8awvrwilsqipjsgi6331gjzl6nypd3zcjx"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; 1284 - fabia = derive2 { name="fabia"; version="2.38.0"; sha256="1v68835z39hsd34vaa07n2kwhrps6mdppxhhbz637lab2pr4h13r"; depends=[Biobase]; }; 1285 - factDesign = derive2 { name="factDesign"; version="1.68.0"; sha256="0qavr5kmg8jlr6gqr31hf371zyzs3fpxvbz5bmla2mwx1c66ih2r"; depends=[Biobase]; }; 1286 - famat = derive2 { name="famat"; version="1.2.1"; sha256="15mvmabimr6ch5m8z2xr4hgxwxmzlha4vmm81635nl764wcya13l"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; 1287 - farms = derive2 { name="farms"; version="1.44.0"; sha256="1zrkdg64kljyi8kvdicimlzmanjyn365lfncyndv4zlqj1majpf9"; depends=[affy Biobase MASS]; }; 1288 - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.28.0"; sha256="0hznf9408ppqqp5ykwjn36dcvn2wjd4101fqab49zba7hwycf6vs"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; 1289 - fastseg = derive2 { name="fastseg"; version="1.38.0"; sha256="006v7qs707xmnr35b7rw135pyvacrmhv55a3c53birkpsrjgkps0"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; 1290 - fcScan = derive2 { name="fcScan"; version="1.6.0"; sha256="10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h"; depends=[GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; 1291 - fcoex = derive2 { name="fcoex"; version="1.6.0"; sha256="1l1bayciavk65my8h1lfhhlrjivr0ja6xsxzm6hfg16dsgjm1hz8"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; 1292 - fdrame = derive2 { name="fdrame"; version="1.64.0"; sha256="1w72bzswb275hr0pyha230301grqifvkacfbffikhadhsivi3yg6"; depends=[]; }; 1293 - fedup = derive2 { name="fedup"; version="1.0.0"; sha256="0dzmxj8ch2r4njpd3hd20i0ai4095dj1bl99z2gn7yjz58zh3n70"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; 1294 - ffpe = derive2 { name="ffpe"; version="1.36.0"; sha256="0zsq6cxy7bwki8n3sk42jl3h2sh1cq2yzhlcvnhdnn3jx7zylfx4"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; 1295 - fgga = derive2 { name="fgga"; version="1.0.0"; sha256="13cm7mqcy65yy54bp1rq0cp38nd1cczkpfxr0iiw0qizp0iwpxnj"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; 1296 - fgsea = derive2 { name="fgsea"; version="1.18.0"; sha256="1mhdgy46nxgv7v54bk9bqfy0vgjzl1law7zy718swdd762xn6g9d"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; 1297 - fishpond = derive2 { name="fishpond"; version="1.8.0"; sha256="1x1pkdv2brnlkxdl7q01xy01pxc9ay9rsacsagw421q2mqbcv0sx"; depends=[abind gtools Matrix matrixStats qvalue Rcpp S4Vectors SummarizedExperiment svMisc]; }; 1298 - flagme = derive2 { name="flagme"; version="1.48.0"; sha256="1p647d2hr09ib16gm73x9g2wirlw7xxmb0fr92yb3gagn0rk32vw"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; 1299 - flowAI = derive2 { name="flowAI"; version="1.22.0"; sha256="0js02yx54pqinsks25p9fcd917952s51l6d32539in2q1dwdfh49"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; 1300 - flowBeads = derive2 { name="flowBeads"; version="1.30.0"; sha256="1qdzlpnyvq0vdpa7jj781xii75h9minzllr196kgkkbrvfa668sx"; depends=[Biobase flowCore knitr rrcov xtable]; }; 1301 - flowBin = derive2 { name="flowBin"; version="1.28.0"; sha256="0lakff548jpgzm78s0090lkg29rdx5lzjh6088hfy5lmb9b0rbb9"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; 1302 - flowCHIC = derive2 { name="flowCHIC"; version="1.26.0"; sha256="144ga5jm2gw9nhva0gfivhdsp5ykiw24ijgh3gl3cd76rpd9bnwm"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; 1303 - flowCL = derive2 { name="flowCL"; version="1.30.0"; sha256="1py230dl5cckg7gigd9xyjvcalaxxlzc2d43w7iz6srkv6bjsdn1"; depends=[graph Rgraphviz SPARQL]; }; 1304 - flowClean = derive2 { name="flowClean"; version="1.30.0"; sha256="0ddg9f8kh7yz822fhil9ywsy25v6az2qb78c7g72ppmx49faj6fs"; depends=[bit changepoint flowCore sfsmisc]; }; 1305 - flowClust = derive2 { name="flowClust"; version="3.30.0"; sha256="03xsmprrkxwkaksjlaxwp54mqfb3zlg6dbqhp87w78fwscisv76b"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; 1306 - flowCore = derive2 { name="flowCore"; version="2.4.0"; sha256="13xpbkxi53rxmhvpdiy6bydmhicmxd2gi96d9c1qx4lkss2f14nc"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; 1307 - flowCut = derive2 { name="flowCut"; version="1.2.0"; sha256="140jch6s2c2lg5h464j2yprv2xipdrss1gixra2yb9g65hdjqy1c"; depends=[Cairo e1071 flowCore flowDensity]; }; 1308 - flowCyBar = derive2 { name="flowCyBar"; version="1.28.0"; sha256="0qcb9nd24hjvm792w3g0cjx9mwcfkz91yf49g66m7fkbkbwym6ml"; depends=[gplots vegan]; }; 1309 - flowDensity = derive2 { name="flowDensity"; version="1.26.0"; sha256="1axl2f7gwi2swaqkagl8fykb4fx14c8cp1fc8679yp52k3mzai5q"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; 1310 - flowFP = derive2 { name="flowFP"; version="1.50.0"; sha256="0agz3p35gq2ax703mpmjccfym6d61ywjka58df57gbk3f41hd03r"; depends=[Biobase BiocGenerics flowCore flowViz]; }; 1311 - flowGraph = derive2 { name="flowGraph"; version="1.0.0"; sha256="19c97r9cqc61jnf1kcfbcnnkjmnq5a1cw7l0vwrjyin5xy5i0088"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; 1312 - flowMap = derive2 { name="flowMap"; version="1.30.0"; sha256="187lz2akz31r2h52b7b9rmqfdjlhrpvh5539nl68r6rnxsakq1gz"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; 1313 - flowMatch = derive2 { name="flowMatch"; version="1.28.0"; sha256="10c2harls0r0jnz4hiisl08pm19k3rqx9ci2zdh4827vwgcxs5pa"; depends=[Biobase flowCore Rcpp]; }; 1314 - flowMeans = derive2 { name="flowMeans"; version="1.52.0"; sha256="1awskkq48qhv4v9glxgfqi0kgwqd62fbj641k4vvxfcwsf2c7bfg"; depends=[Biobase feature flowCore rrcov]; }; 1315 - flowMerge = derive2 { name="flowMerge"; version="2.40.0"; sha256="1ailbfy8rvpsvz7rr7dqp3yfa836nng6ihgxcvdifwj3l5fih6ib"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; 1316 - flowPeaks = derive2 { name="flowPeaks"; version="1.38.0"; sha256="16p5yxgb2hblxzwk2qsa2z191wzz5dnvbg0a4wrhi25hy144b225"; depends=[]; }; 1317 - flowPloidy = derive2 { name="flowPloidy"; version="1.18.0"; sha256="14y0fxa4d653k3izf7y21k2jiz3byx3xc6pckycxp38lvm44yz87"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; 1318 - flowPlots = derive2 { name="flowPlots"; version="1.40.0"; sha256="15arica3hk5mlk3jvk376nrivq31z4amy8ggn6k0mm834gaxgnwn"; depends=[]; }; 1319 - flowSpecs = derive2 { name="flowSpecs"; version="1.6.0"; sha256="0a3cd0sv8jf36147vz6vi24m07c92m31vf62bhihad86ic9kp07y"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; 1320 - flowStats = derive2 { name="flowStats"; version="4.4.0"; sha256="1yr5m7qmhmm52c70z3d0zy4zgf0hja7r2ig9yljv5w86bzm962x6"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; 1321 - flowTime = derive2 { name="flowTime"; version="1.16.1"; sha256="04a43h0vc5gdfafrm57y5x7wxv7sr1javwl713w4zvajgcd3sbjr"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; 1322 - flowTrans = derive2 { name="flowTrans"; version="1.44.0"; sha256="0ldbsn3d4riiidgf2k8vcq4k7s5ywc9lxw7kywnhvqhjqywfwn84"; depends=[flowClust flowCore flowViz]; }; 1323 - flowUtils = derive2 { name="flowUtils"; version="1.56.0"; sha256="1sdwgyvrsz0pp60zdfrcgb7bs8s87j7257p8ck813ydizc324x9w"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; 1324 - flowVS = derive2 { name="flowVS"; version="1.24.0"; sha256="0rh01h5d4skbvbfs4x42xmp1cp5q9higkwh92v0zdzpb85kcc30b"; depends=[flowCore flowStats flowViz]; }; 1325 - flowViz = derive2 { name="flowViz"; version="1.56.0"; sha256="17x04xwyw2pp5zkhgvrmxkb8cbrv9wql6xhjsfpq0n6yd9dxqc1v"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; 1326 - flowWorkspace = derive2 { name="flowWorkspace"; version="4.4.0"; sha256="1a9qb2dcvwgb3z0vdbbzn1rzy77d3da72kirs272344hdx9b2cx9"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; 1327 - flowcatchR = derive2 { name="flowcatchR"; version="1.26.0"; sha256="17vkbj2pzc5pqy07c6ygc4akklnaclxb3m1fl8kl162qb13wj1d8"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; 1328 - fmcsR = derive2 { name="fmcsR"; version="1.34.0"; sha256="10nksgl34hrsjq7z4fbf3wbk5gsvsv81l0afh6r9dlxz86kixypd"; depends=[BiocGenerics ChemmineR RUnit]; }; 1329 - fmrs = derive2 { name="fmrs"; version="1.2.0"; sha256="06ysjavwmxg4mqplsyvhw17v3a0fjz5c3zsz8qm3jmmj7a8wan73"; depends=[survival]; }; 1330 - fobitools = derive2 { name="fobitools"; version="1.0.0"; sha256="05i09412dh62s8cp26j6q9xa9nkigyqzqx2v9vpgq4498bs9qzwy"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; 1331 - frenchFISH = derive2 { name="frenchFISH"; version="1.4.0"; sha256="1l2g3j3q83ir471zfayjq3d36gg6jsh9v2cg3jlhr1x3k6w0rwx9"; depends=[MCMCpack NHPoisson]; }; 1332 - frma = derive2 { name="frma"; version="1.44.0"; sha256="1p28w134jkg0bvb3a5dx89lggx8jhladv7q04lpmfzwsm00304p7"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; 1333 - frmaTools = derive2 { name="frmaTools"; version="1.44.0"; sha256="0z9x0k3kc2944k8p2ybs0ilc3gh71lblw1lr75rrdhy2xlkg9shs"; depends=[affy Biobase DBI preprocessCore]; }; 1334 - funtooNorm = derive2 { name="funtooNorm"; version="1.16.0"; sha256="03v9l27sbx4bzgdss7b384q1qgaqm07mna88w7qkj8lahc68a0r5"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; 1335 - gCrisprTools = derive2 { name="gCrisprTools"; version="1.20.0"; sha256="0rr2mnnf580g484mrsijnzr9zyv6sy2kacpsqqjknkgz0px800w5"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg SummarizedExperiment]; }; 1336 - gaga = derive2 { name="gaga"; version="2.38.0"; sha256="1wygnl8xid27xdbfmhiqw3y6fdbszdm8v4jid9xr6xy47yn6bfla"; depends=[Biobase coda EBarrays mgcv]; }; 1337 - gage = derive2 { name="gage"; version="2.42.0"; sha256="0z7hrwdm6my6p7z04bcpfhqk72pd0s1bdzvsiiym59qj79fbvb83"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; 1338 - gaggle = derive2 { name="gaggle"; version="1.60.0"; sha256="0rz243xv7wp3ihsfxf856bli2gb1ngrbr56kd6m6rm2nkzpgzdb0"; depends=[graph rJava RUnit]; }; 1339 - gaia = derive2 { name="gaia"; version="2.36.0"; sha256="0pflv2qv44yzbxiq37is5prvx69hnj3rn0r3m306gz05cphw8gww"; depends=[]; }; 1340 - garfield = derive2 { name="garfield"; version="1.20.0"; sha256="1wmgzlhqb4ay9mcfwgcqvzsz4ahmik065i72ha1xc49jzn5155lc"; depends=[]; }; 1341 - gcapc = derive2 { name="gcapc"; version="1.16.0"; sha256="05lfx1zdw60ngr6vi2nd9sxpws2fgpy5q5i8nj2633gg5xag7kca"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; 1342 - gcatest = derive2 { name="gcatest"; version="1.22.0"; sha256="09lf136skwib4vygsg3h6svcj13m7w13517bnwsng1fj6a66yzbd"; depends=[lfa]; }; 1343 - gcrma = derive2 { name="gcrma"; version="2.64.0"; sha256="1z4abw9s2hs3csnx25nli7fpvb3rh3l0swzl0wfqp087fcs78pxi"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; 1344 - gdsfmt = derive2 { name="gdsfmt"; version="1.28.1"; sha256="1w3z718q3bhh8bp71va9pbcd62pwbvgjw33ffg960jya40xssvc7"; depends=[]; }; 1345 - geNetClassifier = derive2 { name="geNetClassifier"; version="1.32.0"; sha256="1i1cavbbvxzqgqxfmikghnls18jrq12hb953mjrwa95lkhzdxm2d"; depends=[Biobase e1071 EBarrays minet]; }; 1346 - gemini = derive2 { name="gemini"; version="1.6.0"; sha256="1y7j9cygrkw8a69rvfl5v5vwfchfx477cr5jnmvdi65xff6sv6v5"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; 1347 - genArise = derive2 { name="genArise"; version="1.68.0"; sha256="013ipji3kq79vxqd15vgl6akrigk2nk2d8bjaz0krci0v7f3mzn1"; depends=[locfit tkrplot xtable]; }; 1348 - genbankr = derive2 { name="genbankr"; version="1.20.0"; sha256="1ycmk5qhp1dvbrffqd08pmq5vnc6jywrdkw3g44dmqa00hwy3lbi"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; 1349 - geneAttribution = derive2 { name="geneAttribution"; version="1.18.0"; sha256="1sfhcdzafhc40iwj58i3vbivkpq4avjliwkbqjz0j7ps905q0n9q"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; 1350 - geneClassifiers = derive2 { name="geneClassifiers"; version="1.16.0"; sha256="1lac0v7mrwrf6m5knb7wgv001n60ajssz5jhwxrh6qrdm1xjkjfm"; depends=[Biobase BiocGenerics]; }; 1351 - geneRecommender = derive2 { name="geneRecommender"; version="1.64.0"; sha256="0rbnb09l3nyci962hl5i8m4fsiy97nngyg3ficlk4pihsx0bwwz8"; depends=[Biobase]; }; 1352 - geneRxCluster = derive2 { name="geneRxCluster"; version="1.28.0"; sha256="0vqwbp8b74a33dhbdkisn8nhvprxsi9pqgw92f0s7j367313qljz"; depends=[GenomicRanges IRanges]; }; 1353 - geneXtendeR = derive2 { name="geneXtendeR"; version="1.18.0"; sha256="1gqpcibv9mscxna1h8kkl7shw4gvs2z0jrrg18hrjx918pq6wifb"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; 1354 - genefilter = derive2 { name="genefilter"; version="1.74.1"; sha256="0lsh6akhqm1fadxr7066rcx5y7rnd020icx2cq0bfpymz6ajzsvx"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; 1355 - genefu = derive2 { name="genefu"; version="2.24.2"; sha256="06nak5izjacr9708d134m6y7fnnhy7pylgjl843zdz9cqw5qnjch"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; 1356 - geneplast = derive2 { name="geneplast"; version="1.18.0"; sha256="1lfwj7xhkk8gi1arr5mf38s44gb6j450ai5ir83y5m7mw6s0vphb"; depends=[ape data_table igraph snow]; }; 1357 - geneplotter = derive2 { name="geneplotter"; version="1.70.0"; sha256="1d085lfa3yif5wkys1fb0zzgg0cqwd1y18vasgqqdr6rva075d4z"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; 1358 - genoCN = derive2 { name="genoCN"; version="1.44.0"; sha256="17wy1maxdx8bgyyl702d2xv36a3xxcv4illb2wfrckgqpbfszaib"; depends=[]; }; 1359 - genomation = derive2 { name="genomation"; version="1.24.0"; sha256="0qa3b4mfd7l1sy4pw64zr2d90y5apah900krxjl4x39acygg0i2r"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; 1360 - genomeIntervals = derive2 { name="genomeIntervals"; version="1.48.0"; sha256="0607nl792f12a2bdxlvljxh6q6j2k3r48mx0pira769s8yzfqn03"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; 1361 - genomes = derive2 { name="genomes"; version="3.22.0"; sha256="09219wbqsnjpn8x2ys25qzmfl0v1xmknlcda024a8iag182j2lkm"; depends=[curl readr]; }; 1362 - genotypeeval = derive2 { name="genotypeeval"; version="1.24.0"; sha256="0q0xdr21pgn1a12cxvjrkzcan0aw4nwlh4k7y4h5axy2kvzq21yw"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; 1363 - genphen = derive2 { name="genphen"; version="1.20.0"; sha256="1yykvk3l1swqfafwwmx29klz6rnd3v3k7wdkkiwrdbg7v6y85g3c"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; 1364 - gep2pep = derive2 { name="gep2pep"; version="1.12.0"; sha256="1db88grh7vip52283pln5m2l2jsqs900q847zfqydlgv32kdh2rr"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; 1365 - gespeR = derive2 { name="gespeR"; version="1.24.0"; sha256="01n1bz47cacdbggnp2zkwx5yjy0r06ckm7kmdb795av1vpk9ndgm"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; 1366 - getDEE2 = derive2 { name="getDEE2"; version="1.2.0"; sha256="0d7m96bgm4grqb02symchifrykxali3j21iml451gixd8fxmhmgj"; depends=[htm2txt SummarizedExperiment]; }; 1367 - geva = derive2 { name="geva"; version="1.0.0"; sha256="148q7yw3z09f66rwsy5nqzg20hac3gdssf9m1j3b9vkki4gvcyzj"; depends=[dbscan fastcluster matrixStats]; }; 1368 - ggbio = derive2 { name="ggbio"; version="1.40.0"; sha256="0k3dxacrwgyrkvm7ggc2s1s1pbfs6c0a7ngykkj7jnc73czvnilx"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 1369 - ggcyto = derive2 { name="ggcyto"; version="1.20.0"; sha256="0jd6m84m4znnpix4bcgdby7mnflsn206f5x2vw9n8rxnwzx77wpg"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; 1370 - ggtree = derive2 { name="ggtree"; version="3.0.4"; sha256="0xf4b9vfdyzzivwgw4ymapl5bb4k9p04mmr53822kxgfd5qrs1zx"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; 1371 - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.2.3"; sha256="19hp5hl5fyw7zk45hgxxldg84wwg3jrpx377j7g61bjv5wjzp0ig"; depends=[ggnewscale ggplot2 ggtree rlang]; }; 1372 - girafe = derive2 { name="girafe"; version="1.44.0"; sha256="0f6v7h59p9xqb6zvwx250g4drszmd88lp39sbkyyc2nqvsldxg9g"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; 1373 - glmGamPoi = derive2 { name="glmGamPoi"; version="1.4.0"; sha256="19k0g1xklfllrgpmpwy1984w1f4w801ph8svrnyaf2p5kz6r9n4w"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; 1374 - glmSparseNet = derive2 { name="glmSparseNet"; version="1.10.0"; sha256="0949sq4nwbdnpagcl4qazg7rx6c88alkm8zfalcan6lvk3q50rw0"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; 1375 - globalSeq = derive2 { name="globalSeq"; version="1.20.0"; sha256="0j2nh12laf377l3q5dlfq2jp1zdz38m8snspgcphd848ba792rlf"; depends=[]; }; 1376 - globaltest = derive2 { name="globaltest"; version="5.46.0"; sha256="1f992kqil9c6gfai5z558mpihmp084qmimvfi7ndmqz69nryj2iz"; depends=[annotate AnnotationDbi Biobase survival]; }; 1377 - gmapR = derive2 { name="gmapR"; version="1.34.0"; sha256="1ir2ww5nll9s601z5nl9w7nhmkjzkadj8ahjxbda8l359vl2zmfa"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 1378 - gmoviz = derive2 { name="gmoviz"; version="1.4.0"; sha256="1574gs7h9c77d9rfvxjdnvqwibhccc2mphjcginfqhzac3yj8p87"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; 1379 - goProfiles = derive2 { name="goProfiles"; version="1.54.0"; sha256="1am2y6hsmx0h54x7bdix272c57fi2zc2sdjj8g36fzmqvvv98cpm"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; 1380 - goSTAG = derive2 { name="goSTAG"; version="1.16.0"; sha256="1chd8jsws01am71an1y2y1ff4kwb61sx6zyk0nq56wx53iwvfp9j"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; 1381 - goTools = derive2 { name="goTools"; version="1.66.0"; sha256="1j9wblr9bbj38bdy6fxrqfzk4rk1c5l2ycdvdis9mk84h7physwv"; depends=[AnnotationDbi GO_db]; }; 1382 - goseq = derive2 { name="goseq"; version="1.44.0"; sha256="07qrxssx4rb8r958r1smx8xfpzdxpp55hci3201hcmz3mxz77i0s"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; 1383 - gpart = derive2 { name="gpart"; version="1.10.0"; sha256="12ylbbsgiwpx0lsk96v6kh869hg00hbr4nrd0h3qh54qj0xfdrgh"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1384 - gpls = derive2 { name="gpls"; version="1.64.0"; sha256="0rpyyvg0kdj08l6njm61gxn43dvmvrq8vlzdgdw0x2kfhmnzlrhx"; depends=[]; }; 1385 - gprege = derive2 { name="gprege"; version="1.36.0"; sha256="1ykybxyzr6ksycxl4d4k4a9c4vjg2xjxa2qhr8827sczrwpchg07"; depends=[gptk]; }; 1386 - gpuMagic = derive2 { name="gpuMagic"; version="1.8.0"; sha256="0xvavfiy5lhmhg5mqxrhbjp5pqv5cz23n7bkn857h6nln9cwybar"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; 1387 - granulator = derive2 { name="granulator"; version="1.0.0"; sha256="0m11l4889nc7gv3kvsx9m6cc8vjkskxnv18fkw9hai5c5p7iy6n3"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; 1388 - graper = derive2 { name="graper"; version="1.8.0"; sha256="1005srn4kjz7hfaw4yiggl63ia0am001j1mrsgrp2bf2362rhxdb"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; 1389 - graph = derive2 { name="graph"; version="1.70.0"; sha256="1i7s198d5kw4gk6nqqsd3vqaknj4493p822f2za8q95gv6x02rxa"; depends=[BiocGenerics]; }; 1390 - graphite = derive2 { name="graphite"; version="1.38.0"; sha256="11bgz6951nfygxp3fm0190gf2bb5zplis1bc0am4757liw4qybhf"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; 1391 - groHMM = derive2 { name="groHMM"; version="1.26.0"; sha256="1h63vg1iskw79ijg5h1b9097ams8pp3kvnlawlfci6xfli07xpkj"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; 1392 - gscreend = derive2 { name="gscreend"; version="1.6.0"; sha256="0rfvcbf54cwmyzis588gnaqidg4r7fvv2pfmjzvb4zfxi6sv12ak"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; 1393 - gsean = derive2 { name="gsean"; version="1.12.0"; sha256="02q2z84fwr66vamiqbf8zkc21gydplsxsq20cpinvjggpqhk5mqd"; depends=[fgsea PPInfer]; }; 1394 - gtrellis = derive2 { name="gtrellis"; version="1.24.0"; sha256="0l5271cpzjlm4m0v6xcdg2vxlbhn53x1fd59ynb9jwll93av5h1f"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; 1395 - gwascat = derive2 { name="gwascat"; version="2.24.0"; sha256="0109cxsviq1sk5hfwkjzd0y1kpm934287asjjd0j8jhh4b0ah2b2"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; 1396 - gwasurvivr = derive2 { name="gwasurvivr"; version="1.10.0"; sha256="1gpk24d7w2my69zz4df0ifjjayxjv9p7wfwgbl71xm54mk8a2i17"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; 1397 - h5vc = derive2 { name="h5vc"; version="2.26.1"; sha256="10m7qcvv7q642syrhf6h9l2lxnd1gsap4r1rrwwk53wg7zln8w8r"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; 1398 - hapFabia = derive2 { name="hapFabia"; version="1.34.0"; sha256="0182zihrdpqqcgbws69adq0sfwczd7794ygbmz211wzppszv5zzv"; depends=[Biobase fabia]; }; 1399 - hca = derive2 { name="hca"; version="1.0.3"; sha256="1bk3hmw5r9wp8ljcdmafsr6shcxh5x4zcqba2y527cg40abgga9p"; depends=[BiocFileCache dplyr httr jsonlite tibble tidyr]; }; 1400 - heatmaps = derive2 { name="heatmaps"; version="1.16.0"; sha256="0bw6l44d1xx8qkc0y3nv378q8nb5bwab7jvk3zndn3jy1wf835sn"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; 1401 - hiAnnotator = derive2 { name="hiAnnotator"; version="1.26.0"; sha256="1snw5q14p236x630k8si46ky90736yws0k8sqla8gw1j13ipicry"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; 1402 - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.28.0"; sha256="1yhwbn93g4h1154h87kzk5iyam8cxs9wn3rf1aicb141d635c4cr"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; 1403 - hierGWAS = derive2 { name="hierGWAS"; version="1.22.0"; sha256="0rfil5f6fwij11yyg05y7rkssnzmdgg9ip26f8vph1x3kmaiyrii"; depends=[fastcluster fmsb glmnet]; }; 1404 - hierinf = derive2 { name="hierinf"; version="1.10.0"; sha256="0cfgq38012fjgx66zlscfs3xbsrd8w1bc2xzc87768b0j6rfw0rd"; depends=[fmsb glmnet]; }; 1405 - hipathia = derive2 { name="hipathia"; version="2.8.0"; sha256="0qrwxlwxcn7jq9nnvhxavf6r30xz3z7im0y7qkg2hf1c5qysd0yq"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; 1406 - hmdbQuery = derive2 { name="hmdbQuery"; version="1.12.1"; sha256="0hslspr69p9i0ny9srcyd8br57hfid1wpnz0ir28vmd1zcnq2dc4"; depends=[S4Vectors XML]; }; 1407 - hopach = derive2 { name="hopach"; version="2.52.0"; sha256="1a5cvx0ziiw45jwzcpbdjqdz9svmbygdz7rl3lvw8z4gl8alhbzb"; depends=[Biobase BiocGenerics cluster]; }; 1408 - hpar = derive2 { name="hpar"; version="1.34.0"; sha256="0q5pp04rq2gsh1kibvp8bvjkqc1kb46qpnj6agqp2vyqhrrfrm99"; depends=[]; }; 1409 - hummingbird = derive2 { name="hummingbird"; version="1.2.0"; sha256="1jxm6rynr4q41g0ryx7smib1jyisafa38hijji6n8dgrsmmhmkf4"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; 1410 - hypeR = derive2 { name="hypeR"; version="1.8.0"; sha256="0lg3slb35nmpakbxskfmk774hhxwzg660gw4z0pzacm34r8syzh9"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; 1411 - hyperdraw = derive2 { name="hyperdraw"; version="1.44.0"; sha256="1qkxixkgvvfha0ii8rwwcbrbjmbbxsy8afv5ymcq01k3hbykx44r"; depends=[graph hypergraph Rgraphviz]; }; 1412 - hypergraph = derive2 { name="hypergraph"; version="1.64.0"; sha256="01knpd964m2g9vwd7c72qnc8g2p2pzhvk7lin4mhvcmb3pvsdlh7"; depends=[graph]; }; 1413 - iASeq = derive2 { name="iASeq"; version="1.36.0"; sha256="1zxi6qs84l26bljrm8w551lpndsbsivw9lzskqa8hisk7v9mhnwg"; depends=[]; }; 1414 - iBBiG = derive2 { name="iBBiG"; version="1.36.0"; sha256="1hj0b13zly6i23h1l4v62g7w7napdh4k8i01yypgysdkn6y7bn1w"; depends=[ade4 biclust xtable]; }; 1415 - iBMQ = derive2 { name="iBMQ"; version="1.32.0"; sha256="15yyz68afmdyw8xpxk4j8g7vhqrmndhr7hy0qfw2inb082fggh59"; depends=[Biobase ggplot2]; }; 1416 - iCARE = derive2 { name="iCARE"; version="1.20.0"; sha256="1vjxm4dkrr8wghrg8mf70csdmnjmksq3nh1s5zndfjvcbz233m7f"; depends=[gtools Hmisc plotrix]; }; 1417 - iCNV = derive2 { name="iCNV"; version="1.12.0"; sha256="0672sb46iqrbab8zfcl2vmkxg5y9y394nn18r0i6ysc4ln97v5vr"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; 1418 - iCOBRA = derive2 { name="iCOBRA"; version="1.20.0"; sha256="190rkx3sivj68in36hhin5v535yd6fvlvm7l90w1bl38zpb7p6jn"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; 1419 - iCheck = derive2 { name="iCheck"; version="1.22.0"; sha256="02mlfdlgsj23j3gxahalvxqz29b3zrh7qy7drd11dj9689b66hbw"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; 1420 - iChip = derive2 { name="iChip"; version="1.46.0"; sha256="0jjdpx4rz22ib0zcbnjndbvimrhm107i7vmg96a8zqxhi9335cvn"; depends=[limma]; }; 1421 - iClusterPlus = derive2 { name="iClusterPlus"; version="1.28.0"; sha256="1haj25c4cmmjjvh181b41a9pvkh92f7k2w4ljn17iqg31vm45za1"; depends=[]; }; 1422 - iGC = derive2 { name="iGC"; version="1.22.0"; sha256="1kygn8xawglg7n39m45l3g3s31hm4l2hyi6hc93h656i990qdwgv"; depends=[data_table plyr]; }; 1423 - iPAC = derive2 { name="iPAC"; version="1.36.0"; sha256="1f02319p9q7jn3zw2pqxvy9pan0wfz6qc4gcf0vsdxzll156wbfd"; depends=[Biostrings gdata multtest scatterplot3d]; }; 1424 - iSEE = derive2 { name="iSEE"; version="2.4.0"; sha256="0rqzy8dj48md72b2c4d1mb1immncv0xqsmal6k5f34f9ckgyz580"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; 1425 - iSEEu = derive2 { name="iSEEu"; version="1.4.0"; sha256="1zs11836hn57vvf4fjkq6nhsyw2qqhplk967b8mc9jsw97ah0dza"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; 1426 - iSeq = derive2 { name="iSeq"; version="1.44.0"; sha256="0yw9zg9210al5k8m1dzq5a1rn8kb2wcscbavdapk2zlz1qhs2cl5"; depends=[]; }; 1427 - iasva = derive2 { name="iasva"; version="1.10.0"; sha256="1i2jnyaayqwdz5sfa9lbbw7vjwk55cp30caiy4x09b0dsb5pxxdn"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; 1428 - ibh = derive2 { name="ibh"; version="1.40.0"; sha256="13gbgi1wymx36khnvhrr47q7laxhg6kxmcc8vmlfsv804ckcy4mx"; depends=[simpIntLists]; }; 1429 - icetea = derive2 { name="icetea"; version="1.10.0"; sha256="1yrbgwrwilgm15v0aqw160xid52qb7ggd0k0qc44bjgrn0xs7iqf"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; 1430 - ideal = derive2 { name="ideal"; version="1.16.1"; sha256="0kag3l6bh0507c01ca7avgh7a55580fr189wgwfippiqhb2n8hj1"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; 1431 - idiogram = derive2 { name="idiogram"; version="1.68.0"; sha256="08py2vllkqsarzgbk3r0jnd2dw18f71d1gb9qbbjrkac4i1f6rpk"; depends=[annotate Biobase plotrix]; }; 1432 - idpr = derive2 { name="idpr"; version="1.2.0"; sha256="17xvmwc0kpc74az89zp17qrd24ghnd11a76hb037pfyda285l067"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; 1433 - idr2d = derive2 { name="idr2d"; version="1.6.0"; sha256="1yp0s9qbwdh34m6xxly4nf5j1f7n8cpxwqibwwb18wlklq8i4g22"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; 1434 - igvR = derive2 { name="igvR"; version="1.12.0"; sha256="0w1p9y3j45zw2gl5akdjkxla8vyyq8yvj70czp44dq6898d8875l"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; 1435 - illuminaio = derive2 { name="illuminaio"; version="0.34.0"; sha256="1sy0i3nbzsw4ymdxaiwpyx1vcg9yp3i8xfjcymqwhv95j3kyglv9"; depends=[base64]; }; 1436 - imageHTS = derive2 { name="imageHTS"; version="1.42.0"; sha256="104b7zg7svqka44rdyfk3ay0qwmh9gwynx65cdxdl6wfjr2jlqfg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; 1437 - immunoClust = derive2 { name="immunoClust"; version="1.24.0"; sha256="0f02vjivhb3niv32mf1hnvv9pljgww3mya5hw7ryshkwf0rhwa49"; depends=[flowCore lattice]; }; 1438 - immunotation = derive2 { name="immunotation"; version="1.0.1"; sha256="04by6nr8szn62cil0rb748089l1j9zbfn6lazb6qdxwkqygk7b7k"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; 1439 - impute = derive2 { name="impute"; version="1.66.0"; sha256="0pprkv25avxhllddcssvqvy3nibmqkfwaq4xnlhka7858gyiyd1k"; depends=[]; }; 1440 - infercnv = derive2 { name="infercnv"; version="1.8.1"; sha256="1li3zqwh00qf0a6kjbli703j530kapb5fr0sy084rc6n32kqfkyq"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; 1441 - infinityFlow = derive2 { name="infinityFlow"; version="1.2.0"; sha256="088b0m63205vcwjja0lj0mj6h90m0abfj46lsdghxjd2gwz6r8km"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; 1442 - intansv = derive2 { name="intansv"; version="1.32.0"; sha256="0xqk4kyjv95vmhkpx7lhdwavpf0v1sg5829wm5fg88jlpn8zr30s"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; 1443 - interacCircos = derive2 { name="interacCircos"; version="1.2.0"; sha256="17647z6h91656rdsynn3dg9b853n32nvl7sl108w9d9iby806gjb"; depends=[htmlwidgets plyr RColorBrewer]; }; 1444 - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.30.0"; sha256="1jgvm3vwaz62hrhs3qsvmpy4xh5q8l6hbhg53gx75f08pg0ks8bp"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; 1445 - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.30.0"; sha256="00rgrrmglslgb6j7whp0m5dlyl4436r647br05rrpv8cxrmbs2iv"; depends=[BiocGenerics DT shiny]; }; 1446 - inveRsion = derive2 { name="inveRsion"; version="1.40.0"; sha256="0zp1ljx1wzyzvihjlv6ww5rfhqsnl6rffsczsc5arcn8583f7zk7"; depends=[haplo_stats]; }; 1447 - ipdDb = derive2 { name="ipdDb"; version="1.10.0"; sha256="0a0c8ls4dm671pdjlx3as3mai50v2j6fxdawlm5fy74nqvpahhfr"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; 1448 - isobar = derive2 { name="isobar"; version="1.38.0"; sha256="04894wnygby4f7mazg7wj25wrhdjmliw4k9sg4dcym7qvmw1qh37"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; 1449 - isomiRs = derive2 { name="isomiRs"; version="1.20.0"; sha256="07jjvgkfgrj1kyj18y323pdr1d3b51s4kbwhikcz1v6zyfii06ha"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; 1450 - iterClust = derive2 { name="iterClust"; version="1.14.0"; sha256="0qxfb6dwmvhy15sd4rk4dac0mpy6ydhvjw5jq9w6frmzg13azrnx"; depends=[Biobase cluster]; }; 1451 - iterativeBMA = derive2 { name="iterativeBMA"; version="1.50.0"; sha256="0vr74j8x1n7qavg4cj5w08j7i18ndkw48wl9sxgcwfx1h9p8362y"; depends=[Biobase BMA leaps]; }; 1452 - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.50.0"; sha256="1fmbxn4lh4a49ixwv8qs1czlz2qz4s989mmia5pkinrymn08gyl6"; depends=[BMA leaps survival]; }; 1453 - iteremoval = derive2 { name="iteremoval"; version="1.12.0"; sha256="1xjhnm17g76r65rllai7pkxnlhd2rflpsimg2r1l8smqkhsqb1y1"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; 1454 - ivygapSE = derive2 { name="ivygapSE"; version="1.14.1"; sha256="0hirk97ild9g7svzjgh6l58zjcrlbcxs7msf7155x7mmbiil8p14"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; 1455 - karyoploteR = derive2 { name="karyoploteR"; version="1.18.0"; sha256="11sgxz2xz685pgm8mf0hzm6aryx4fj5g3dlffjzpqxh3awfqa19p"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 1456 - kebabs = derive2 { name="kebabs"; version="1.26.1"; sha256="04q7rgi2wfbq7zkaxq6xkx4v9plk6l87250w7y3djrkynqv6nxcl"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; 1457 - keggorthology = derive2 { name="keggorthology"; version="2.44.0"; sha256="1c25g3pw2aza61zrghh2kxrscdjc23nk2ly5pdz5phcyiim2z98p"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; 1458 - kissDE = derive2 { name="kissDE"; version="1.12.0"; sha256="00zw2hq4ncfcww9q1rcmh1zcf0ndgdiycmf71y7nwp8lwclrwf1b"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; 1459 - lapmix = derive2 { name="lapmix"; version="1.58.0"; sha256="1845pchhjvr1k1m0zz3llp50jf1dig9p518qw15hlp9gd3hl1zw0"; depends=[Biobase]; }; 1460 - ldblock = derive2 { name="ldblock"; version="1.22.1"; sha256="16vp5psmigxdkkd6fbivb6s8mvd7rsnm771wsbjvayl2y7ig7kq4"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; 1461 - lefser = derive2 { name="lefser"; version="1.2.0"; sha256="0wxv16di1cv14sv0nsfzkqlxxvmw0yi8a8qr12l5flzgq5dyz1ah"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; 1462 - les = derive2 { name="les"; version="1.42.0"; sha256="11w7xk57wdrh2b47kj282wrshcy9rqj7vl537dpi7b7kjy7sz4g7"; depends=[boot fdrtool gplots RColorBrewer]; }; 1463 - levi = derive2 { name="levi"; version="1.10.0"; sha256="0x95159vbkry3lcblxqa9cc8hfcbmx3906xnmpl4cpl8fk3ydlfn"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; }; 1464 - lfa = derive2 { name="lfa"; version="1.22.0"; sha256="1lqcgb8v6xy8vi6i3pjyghiniwsq10a262b2j3smgghjg5dp8mf6"; depends=[corpcor]; }; 1465 - limma = derive2 { name="limma"; version="3.48.3"; sha256="0385ac0hvvml99krcgcpp6q7layjhzgp9xcxkcjrpfg5mjg1z4sx"; depends=[]; }; 1466 - limmaGUI = derive2 { name="limmaGUI"; version="1.68.0"; sha256="0pday8vb7kl10111nh5d7rcp3djy7wxmakam17d4032gfyslcj4j"; depends=[limma R2HTML tkrplot xtable]; }; 1467 - lionessR = derive2 { name="lionessR"; version="1.6.0"; sha256="0p1abfp4jvykrng190b9x8z3l0mgvbnbi59cqhv71ahvzcb0mm76"; depends=[S4Vectors SummarizedExperiment]; }; 1468 - lipidr = derive2 { name="lipidr"; version="2.6.0"; sha256="158i1fsxqm0qzxbnnq123vbd0qc46an1q0mzz7dx1nsh5q8qn0gv"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; 1469 - lisaClust = derive2 { name="lisaClust"; version="1.0.0"; sha256="1slhdhg3i6cs2xlkravghjfnbv1bkfk5pgb5gx2f1cxl9mi2inb1"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; 1470 - lmdme = derive2 { name="lmdme"; version="1.34.0"; sha256="1irdhq21ln3a5f20hiwwa58z4v92bqlp43cyd4jwdq8k665lq3df"; depends=[limma pls stemHypoxia]; }; 1471 - loci2path = derive2 { name="loci2path"; version="1.12.0"; sha256="0msx3kpw06rsnfpm6mlrn700n8w1zaq000a86sps9hw15z1df2ka"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; 1472 - logicFS = derive2 { name="logicFS"; version="2.12.0"; sha256="0k2a718wxq8aqm3i7x01h0zwz7a69m604kkxq85x7gxrx2baqa79"; depends=[LogicReg mcbiopi survival]; }; 1473 - logitT = derive2 { name="logitT"; version="1.50.0"; sha256="1z51dy6z12qvb3py9w02j2w94vj8xsyar3mhz54spfkc5jka2bw6"; depends=[affy]; }; 1474 - lpNet = derive2 { name="lpNet"; version="2.24.0"; sha256="16kdc5xfiiv2vzmjywywfdx42qf01nbpyzfnq0gq4wnqjnqckxjc"; depends=[lpSolve]; }; 1475 - lpsymphony = derive2 { name="lpsymphony"; version="1.20.0"; sha256="0aw4b3p5z8ys7zlwy8s3bsqk03xwx42311yxr7q14w3f7sn3shzn"; depends=[]; }; 1476 - lumi = derive2 { name="lumi"; version="2.44.0"; sha256="0qjdxjdzfnnxcm07bf51v38388s5qf1i03l1sdb9jf3gxdh8yh02"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; 1477 - mAPKL = derive2 { name="mAPKL"; version="1.22.0"; sha256="061y4rcg0shdlk5h63jy2gib8bm775bz6xrzzxsrw4pp9bj67irk"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; 1478 - mBPCR = derive2 { name="mBPCR"; version="1.46.0"; sha256="04218jnk1g37nmf03a3lkc0a0lc2s91d2b5i8isvcw293fdx3ckl"; depends=[Biobase GWASTools oligoClasses]; }; 1479 - mCSEA = derive2 { name="mCSEA"; version="1.12.0"; sha256="0ffvnvxmmb25pnh7v9bln9kaa99417aj3jhad1nbbdg0nvgcbx87"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; 1480 - maCorrPlot = derive2 { name="maCorrPlot"; version="1.62.0"; sha256="0ry46nc49gjzb0f3xlj3yfb1j2air8czrkvbg69403bs39b4lidw"; depends=[lattice]; }; 1481 - maPredictDSC = derive2 { name="maPredictDSC"; version="1.30.0"; sha256="1k8zibi8pdcdhignm0i0ram8v1v6sqfkpv2wlyqsmr5z2wz79hqk"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; 1482 - maSigPro = derive2 { name="maSigPro"; version="1.64.0"; sha256="192yd7pdx8smblzbqcjgbk6gy1vjy5n9s63za3yzigrkvf3mw1bq"; depends=[Biobase MASS mclust venn]; }; 1483 - maanova = derive2 { name="maanova"; version="1.62.0"; sha256="13bspz2x4dbpyldmy5qn2449jr14xrxxziczgp5cp351n3srx0l4"; depends=[Biobase]; }; 1484 - macat = derive2 { name="macat"; version="1.66.0"; sha256="1bwas3h5pcrkd5jyg30biqdcgkfpjdsi1y2llr7wwx6clrabls22"; depends=[annotate Biobase]; }; 1485 - made4 = derive2 { name="made4"; version="1.66.0"; sha256="1v8zpxxzmzkq1b88xx5ji9bn8xjas69s093864mywgr2dx3w25dc"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; 1486 - maftools = derive2 { name="maftools"; version="2.8.05"; sha256="0760qp75rawanfbfx834ds7r7lb3q6g3ix38sv7z84nm34bc77wl"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; 1487 - maigesPack = derive2 { name="maigesPack"; version="1.56.0"; sha256="0k0ybh8852yd9ybpsdyqrb5cdkcbw4rb61ixakq07j6i2j78ac1n"; depends=[convert graph limma marray]; }; 1488 - makecdfenv = derive2 { name="makecdfenv"; version="1.68.0"; sha256="0dm7dpix6baa1jwn2x7ilbf9c2hhli0cyy3bdfcdzjpwfvrvwb36"; depends=[affy affyio Biobase zlibbioc]; }; 1489 - mapscape = derive2 { name="mapscape"; version="1.16.0"; sha256="07m1mh1chkflcgillrbb54zkkk0827cm5w055dsb849r4ri5a0h8"; depends=[base64enc htmlwidgets jsonlite stringr]; }; 1490 - marr = derive2 { name="marr"; version="1.2.0"; sha256="00khqvb8fc1z8i2rb2vy1mxwzqyh0sc6c99yb1jqnbbdsmjsayqx"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; 1491 - marray = derive2 { name="marray"; version="1.70.0"; sha256="0wpmrhqpyv27h1hn31hzz21r74r7yqx79ljv8i8gn6ix8lf5ca56"; depends=[limma]; }; 1492 - martini = derive2 { name="martini"; version="1.12.0"; sha256="1zzpxbhwwla8cljla4pyj7fvj5qclb0q9y91fbhikqrf53as22xp"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; 1493 - maser = derive2 { name="maser"; version="1.10.0"; sha256="1cbi8768blj5ccn9h5pinx5iwdmn0wh4mdgy5ayvqqb2ngxllhj8"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; 1494 - maskBAD = derive2 { name="maskBAD"; version="1.36.0"; sha256="0j3mdb7gr1352qs70x89yclrws65ld1mqbn4yzyhhcsryhwlaskk"; depends=[affy gcrma]; }; 1495 - massiR = derive2 { name="massiR"; version="1.28.0"; sha256="1azcmh8ryblyrp929j16lm2nw03s7lixa18d3srx4qwkhafmk1gm"; depends=[Biobase cluster diptest gplots]; }; 1496 - matchBox = derive2 { name="matchBox"; version="1.34.0"; sha256="0jsr5zcdmlq2wgq6wj8v84hb9l0q9lq49a9yvxpjq5fz4mjrbh42"; depends=[]; }; 1497 - matter = derive2 { name="matter"; version="1.18.0"; sha256="0g1xn8lrn0jw8mxqrmz9yarlp0b50z8hx25yrg6fmmqb5fklrl90"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; 1498 - mbkmeans = derive2 { name="mbkmeans"; version="1.8.0"; sha256="1k7ngpx4s50jplrsv19zzjr7izpdl9wwppb218ih5cp0ki1gcc2n"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1499 - mdp = derive2 { name="mdp"; version="1.12.0"; sha256="1z8f882by8izjql3qbgj9ixjiclcz315b44h6l2crlfqmi6rnrfl"; depends=[ggplot2 gridExtra]; }; 1500 - mdqc = derive2 { name="mdqc"; version="1.54.0"; sha256="1vihcpxa9azishzk91qk8fslan0xiq1mqm6r23r575czz7d7q7r3"; depends=[cluster MASS]; }; 1501 - megadepth = derive2 { name="megadepth"; version="1.2.3"; sha256="0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; 1502 - memes = derive2 { name="memes"; version="1.0.4"; sha256="1lq4yngb6530mqbk13ln4ddlj63dpsjnzj0rkbqynh1gnvsjm0m3"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; 1503 - meshes = derive2 { name="meshes"; version="1.18.1"; sha256="1i9p3nhwmx85c8b1i924nblb6cpw565mzavf0lsp17gnm3g5jy40"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db yulab_utils]; }; 1504 - meshr = derive2 { name="meshr"; version="1.28.0"; sha256="14jhjm00jrb5dfjqjhk2pxla0fr3dldj6271kkr8d1ccz3s00r6m"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; 1505 - messina = derive2 { name="messina"; version="1.28.0"; sha256="03ak4njag62mi1ip6bhfj04hqqgn7q07sspsaxvbl28q6qsrnhdl"; depends=[foreach ggplot2 plyr Rcpp survival]; }; 1506 - metaCCA = derive2 { name="metaCCA"; version="1.20.0"; sha256="1di91vrrh6wh4ha57izdn2bv83id6r3f1x2i818dxznivfjlgs7m"; depends=[]; }; 1507 - metaMS = derive2 { name="metaMS"; version="1.28.0"; sha256="0parnww85bprwpfyi4k5zk036vdz64dn1wfd7p913i8srhsrjylr"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; 1508 - metaSeq = derive2 { name="metaSeq"; version="1.32.0"; sha256="1s8966lmyiamdba4a714zdafhhsxgx7xsrsbd4g24nq46m3kmval"; depends=[NOISeq Rcpp snow]; }; 1509 - metabCombiner = derive2 { name="metabCombiner"; version="1.2.2"; sha256="1zyn1sphm0p50b5ni9kaicgmglh6h1pgbvx608imjjijvx3lk0lm"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; 1510 - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.2.0"; sha256="1pjmwg04wqkf0das9h9wzk8arb4vf81j7yhmg71kq5982nl4whqa"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; 1511 - metabomxtr = derive2 { name="metabomxtr"; version="1.26.0"; sha256="0bj18czq4p8a5flwg19q63fv6jv0llybxr82ipg7zl5vjdkj6siz"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; 1512 - metagene = derive2 { name="metagene"; version="2.24.0"; sha256="07mhpizwq6shd38a3v1yb2kks68xh76ka68lprpfgk4mvnak8by9"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; 1513 - metagene2 = derive2 { name="metagene2"; version="1.8.1"; sha256="1w3fvscsjklp2imxmwnbzgw0vr9xgl64k0bc9ln9sk2zqkf47av0"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; 1514 - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.34.0"; sha256="08yxwy62aqynnrzb98p23zrh17gxvdj3jxzpd1shcssk3cakra37"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; 1515 - metahdep = derive2 { name="metahdep"; version="1.50.0"; sha256="1p63rhhk8kj2qlzxyrww3wlz0ni4irq5mghh537z3hn9vbiw2njz"; depends=[]; }; 1516 - metapod = derive2 { name="metapod"; version="1.0.0"; sha256="1hbcwr6d8gyrf4azh0gi588xkrg6gz7gsb5hbvzqkhplbsp6shlv"; depends=[Rcpp]; }; 1517 - metaseqR2 = derive2 { name="metaseqR2"; version="1.4.0"; sha256="1dmycdkjzx7ipzsa7x2ddzlrm72kanf80n375b7ajmr0zhazks8w"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; 1518 - metavizr = derive2 { name="metavizr"; version="1.15.0"; sha256="16r5rnrk69qqy5w2ynpg3yx3h2cmrskvccg572v9k58g2n4gwkgs"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; 1519 - methInheritSim = derive2 { name="methInheritSim"; version="1.14.0"; sha256="0jjq98wgml432pshc2s9703aqhb2vg7jca28shhf73rjjcvss5jd"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; 1520 - methimpute = derive2 { name="methimpute"; version="1.14.0"; sha256="05br8cigmgvyvs36r8mzkhcxh9jwi14yd83v8z8w5y7yr9dyzaak"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; 1521 - methrix = derive2 { name="methrix"; version="1.6.0"; sha256="0mbbmg4b7in3h3dw10wzygmzxb0avar7pxfzq0fifh0kmv6f9lsg"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; 1522 - methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; 1523 - methylCC = derive2 { name="methylCC"; version="1.6.0"; sha256="1jvhyajn6jzs2aqsjjzgkvh1jpmddfx7kgawa2cm97fi8qqrrsvv"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; 1524 - methylGSA = derive2 { name="methylGSA"; version="1.10.0"; sha256="03na89dh1f8ykkbfrwxin1g12dlbx4b7zaxngqswbz3q2jc9h66f"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; 1525 - methylInheritance = derive2 { name="methylInheritance"; version="1.16.0"; sha256="0llc2rpkqkg75wjjfgk3xpb9fapxzk7f10d1x6yxl5a19ws6j7sa"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; 1526 - methylKit = derive2 { name="methylKit"; version="1.18.0"; sha256="147nag4rz2xpjkkf8rmhja9k4ixjj1hsb0lq3lw7mw6q67zxsvf3"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; 1527 - methylMnM = derive2 { name="methylMnM"; version="1.30.0"; sha256="1av81b9s7dz7aa9g6pa13l5lyxn8frgb6shfq2if1sqsksfpmwmz"; depends=[edgeR statmod]; }; 1528 - methylPipe = derive2 { name="methylPipe"; version="1.26.0"; sha256="1q1bybxqal9ny04s71fwwyj29536glpcss5x7zbmj20kd1ll35dm"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; 1529 - methylSig = derive2 { name="methylSig"; version="1.4.0"; sha256="1phkc09vxyydn0qqy0r5j31lxcym0rznjwdqd8sh1diy0w7g23bf"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 1530 - methylscaper = derive2 { name="methylscaper"; version="1.0.1"; sha256="0ryasmnr3d75hl7iwwgkzf5an24jwds501y6zpx6nqdq3fs0k2a7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; 1531 - methylumi = derive2 { name="methylumi"; version="2.38.0"; sha256="1941rc524ssx8gwhmwk40mgfrhddfs6hgldvs7bi22r29gm4y7qj"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; 1532 - mfa = derive2 { name="mfa"; version="1.14.0"; sha256="18z88rhps3a7fa5za5y76dxnk95sawgyi33wcsq4zpx000gc9a01"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; 1533 - mgsa = derive2 { name="mgsa"; version="1.40.0"; sha256="15qs1fkakkk904243ym03zin54y49d3x0hc1skj82ly5dydp30k2"; depends=[gplots]; }; 1534 - miQC = derive2 { name="miQC"; version="1.0.0"; sha256="1z4yplsszrj6qi60q9r7w9chir4k0k2vjac7ss8895in8zr4xd23"; depends=[BiocParallel flexmix ggplot2 SingleCellExperiment]; }; 1535 - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.16.0"; sha256="0lznnf33nmb5pvx8fyxn7krzr1a6a0wpca8w1jx2npgrl0jmfahp"; depends=[]; }; 1536 - miRLAB = derive2 { name="miRLAB"; version="1.22.0"; sha256="0qyc3hl31849jrjnbrk7vmks667qbf27kls8lbx72cdqhvhg9s0k"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; 1537 - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.20.0"; sha256="094jndkrkqv35xw669hymf0rfqf4b4y6pmwg3japd9qlz4gvgjwn"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; 1538 - miRNApath = derive2 { name="miRNApath"; version="1.52.0"; sha256="05ba7zrp6dkkgs7n3siy0hqaz1byp31q390vvxwa0wd2vbbhs0ks"; depends=[]; }; 1539 - miRNAtap = derive2 { name="miRNAtap"; version="1.26.0"; sha256="02mr56p22f5zy8d4bcy56h1995p2nq5w50n5yahb8fvkmjkw4d4c"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; 1540 - miRSM = derive2 { name="miRSM"; version="1.10.0"; sha256="15bfss4dchdw21r2z5a9frfy579vmqndsmf4mx5cqhlk4j658rjx"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; 1541 - miRcomp = derive2 { name="miRcomp"; version="1.22.0"; sha256="0118l8qwr9v7ip2lhi6icijinqfrbays8d9q5rxaykdzyvs8q3ld"; depends=[Biobase KernSmooth miRcompData]; }; 1542 - miRmine = derive2 { name="miRmine"; version="1.14.0"; sha256="0h9v7gfn9m9bw0bjw7wvydq44sx97pr1zc089fvskmdnkwb4dxjw"; depends=[SummarizedExperiment]; }; 1543 - miRspongeR = derive2 { name="miRspongeR"; version="1.18.0"; sha256="1gl7y3rn3kajmbj5ql81mbrdr5lc7ml1ihafaialdvr9r9n4gx7z"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; 1544 - mia = derive2 { name="mia"; version="1.0.8"; sha256="0dkzz9ys1cvqfwj4f2gjd72pmj4nzm7nhjl5qhmgg4i7mblp3wwk"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; 1545 - miaViz = derive2 { name="miaViz"; version="1.0.1"; sha256="0awwqmddjb23x3ydanw8q57j1995zw0zvs8cj459gwlqsmdi6bin"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; 1546 - microRNA = derive2 { name="microRNA"; version="1.50.0"; sha256="1w9rp9n415jv1nxc9iac38zy7nfshxrclxqb3364xyj2ww1krik6"; depends=[Biostrings]; }; 1547 - microbiome = derive2 { name="microbiome"; version="1.14.0"; sha256="1ay491rvwmjj6gq9c5ic65v9hfakz8kkqhibb2c1nwvccxyl5ai2"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; 1548 - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.6.0"; sha256="17jxqlppwf6z0028nsmsqib0xw1jzp34pjp51ijq3yw19krid20i"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; 1549 - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.2.0"; sha256="0f0mn4mb4x0s005f457v1d4fz8b0f0zvkzjy39mcc43jalm8nmw6"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; 1550 - midasHLA = derive2 { name="midasHLA"; version="1.0.0"; sha256="10zj510qbdrw449a5dkn5v26qfah58hd7y0cxcadkmn8kfq6y2ys"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; 1551 - miloR = derive2 { name="miloR"; version="1.0.0"; sha256="1vll9zjbw1y9zd2qii0czrksdxggz5q45y958ih372dy5qwxlzki"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; 1552 - mimager = derive2 { name="mimager"; version="1.16.0"; sha256="0s0vwspbh7dslads2k0px6iij7fmhwz09j52p0nd942xlkan635a"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; 1553 - mina = derive2 { name="mina"; version="1.0.0"; sha256="0skaldzwp1qxhn6sbhy07672ha6ih1kwrbaxwvn9ln369c24znbn"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; 1554 - minet = derive2 { name="minet"; version="3.50.0"; sha256="0bir2zr4r2wawkdvdhrk2hcyxmgkrkfvx36jj85fcm24axlqrzzb"; depends=[infotheo]; }; 1555 - minfi = derive2 { name="minfi"; version="1.38.0"; sha256="189lzppvrz6bw2kpppawgsfjyh2ahyy8bi9z8srpas67qf2r8jmj"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; 1556 - mirIntegrator = derive2 { name="mirIntegrator"; version="1.22.0"; sha256="0k03nda56ldabizxkl0hcmh77ri4y6h4av1rq0v0zkq00wj89rr2"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; 1557 - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.0.0"; sha256="0z4gm7q362kprdxxk41qva5ir33m9ddf190jra9jc2c2dh5ambxl"; depends=[assertthat caTools corrplot data_table dplyr MASS pheatmap pscl purrr R_utils reshape2]; }; 1558 - missMethyl = derive2 { name="missMethyl"; version="1.26.1"; sha256="1hmym59jpsr02l4324b7h82cmfr2q4m877r4vf3svf95r9rhavs4"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; 1559 - missRows = derive2 { name="missRows"; version="1.12.0"; sha256="168i6pmgpy50pp85nf5h042llxggcnbx042hzc14hp4pr87qxshm"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; 1560 - mistyR = derive2 { name="mistyR"; version="1.0.3"; sha256="0sidwpby8m3dahwzidbvskm0ghgw8c5kn60940m18x55pcdkh167"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; 1561 - mitch = derive2 { name="mitch"; version="1.4.1"; sha256="1vwgd5pmvfwlwi0y4030h1ds4gchaw34d9afmskmr78jayrjd5cs"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; 1562 - mixOmics = derive2 { name="mixOmics"; version="6.16.3"; sha256="1x6dbw4q6p9vngm256fr96r9fjxk5nik5ivkhbl5a9zqyq8wagpa"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; 1563 - mnem = derive2 { name="mnem"; version="1.8.0"; sha256="1knd28wps5rzr1m5fs7przjk3dv0v9sqcx9nw819zlchkl8xhfqc"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; 1564 - moanin = derive2 { name="moanin"; version="1.0.0"; sha256="1ps420hgcrqvn0xbcb49h52af07mz0hr5ix5q12fdkvgyhrqa7s9"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; 1565 - mogsa = derive2 { name="mogsa"; version="1.26.0"; sha256="197s2kc1dd2y33w32w4pvhwav37mmgn6rvin4r2l0xy98mvjzkj5"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; 1566 - monocle = derive2 { name="monocle"; version="2.20.0"; sha256="05j1vc51f39xalggdq27y7218gkr3zq7fh7jhzsb4jj7fpn837ry"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; 1567 - mosaics = derive2 { name="mosaics"; version="2.30.0"; sha256="14jdgiy8wi5psglsq0z6svkn7r3dn5sil5prs2w32csl3w14g7c5"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; 1568 - motifStack = derive2 { name="motifStack"; version="1.36.1"; sha256="140xclzgn5z64v5nm4kvj0qwvqb7ix91bbmimsfc6k1p0l8lwsvv"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; 1569 - motifbreakR = derive2 { name="motifbreakR"; version="2.6.1"; sha256="1n6v8a7c27aswmbrlcwcpghf27aplkc6nn923imglc3c0sh2lkrz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; 1570 - motifcounter = derive2 { name="motifcounter"; version="1.16.0"; sha256="1w2d68iaibz1gh0f1mlqb4grwv1i89v0vn11050w5pbqv2jbz9vr"; depends=[Biostrings]; }; 1571 - motifmatchr = derive2 { name="motifmatchr"; version="1.14.0"; sha256="1vif3dp4lv4jz1pxsq0ig791ir8q65jmrlqmkyfxpfxfj5alqnbm"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; 1572 - mpra = derive2 { name="mpra"; version="1.14.0"; sha256="19yyyswj82y1mgr4w62aai9v67p37waml8v42609r599bkch9k7r"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; 1573 - msImpute = derive2 { name="msImpute"; version="1.2.0"; sha256="1lz8qf48jmy5ihmfhl7vacrdwlzmpsp9sj6mavi0smv0kljgnlyd"; depends=[data_table FNN limma matrixStats mvtnorm pdist rdetools reticulate scran softImpute]; }; 1574 - msPurity = derive2 { name="msPurity"; version="1.18.0"; sha256="0zfha7x046bg2y1py8x99i826vyim01aapsnr4zr9i4qajj0cv1n"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; 1575 - msa = derive2 { name="msa"; version="1.24.0"; sha256="0gndkq0v4v1kg1s3v6m4n4l1kvll7hl7k103qyamic9ylh83q03j"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; 1576 - msgbsR = derive2 { name="msgbsR"; version="1.16.0"; sha256="129i8bvkdrqppli57di4a33xwxw4grlg23sii00w1b359f0w49mi"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; 1577 - msmsEDA = derive2 { name="msmsEDA"; version="1.30.0"; sha256="0555a3riyp781mlffmnf93igfq8vl8wjk51pa9qb48qkdn6y8pfc"; depends=[gplots MASS MSnbase RColorBrewer]; }; 1578 - msmsTests = derive2 { name="msmsTests"; version="1.30.0"; sha256="11vhy1l6za73dpdj85q4ksaghgd8vb2h8v9iirmsn2vpajqrvgjh"; depends=[edgeR msmsEDA MSnbase qvalue]; }; 1579 - msqrob2 = derive2 { name="msqrob2"; version="1.0.0"; sha256="1gahb7v4rmm1q4qs8z8ygz7xia76cwjim6j2wvy0dfm0ffk8ypbk"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; 1580 - multiClust = derive2 { name="multiClust"; version="1.22.0"; sha256="1hck6jgqapq4ik8lhpaypvm2zzlygpgydn0qg78iyz5b40imhrg4"; depends=[amap cluster ctc dendextend mclust survival]; }; 1581 - multiGSEA = derive2 { name="multiGSEA"; version="1.2.0"; sha256="12dwhcsbhx8rp79q5jb0bykfys6mglccygdhj7yd91fhvb0vgins"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; 1582 - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.10.0"; sha256="1rfs1gg34lb4qz0jdxailhd3swm8r1vyjdjsilw4hr5qlm3srhnh"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; 1583 - multiMiR = derive2 { name="multiMiR"; version="1.14.0"; sha256="1chgs9yk64r4wsyvg93c87cl9ja94x8d7cxlgr5026bslk5p42wy"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; 1584 - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.16.0"; sha256="0kpmnlb35zjc4b9wb1711hmgwcizah9y7pl569zwil4pcyxhspia"; depends=[doParallel foreach SummarizedExperiment]; }; 1585 - multiSight = derive2 { name="multiSight"; version="1.0.0"; sha256="1mxpvzzw2nx2hs9vkw39d5psxk53gg1hwkniq93yzqz78239c168"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; 1586 - multicrispr = derive2 { name="multicrispr"; version="1.2.0"; sha256="0qqrb5bq7vllqpi3z7bq3w2lfhgarr68axiq3mhk8y02ypqwlb21"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; 1587 - multiscan = derive2 { name="multiscan"; version="1.52.0"; sha256="0wz05cfngms6891gzl8vqpf8fi7m0zvk0cjn849721dy54w5gffs"; depends=[Biobase]; }; 1588 - multtest = derive2 { name="multtest"; version="2.48.0"; sha256="1wi15v4llgv11hpb2j9h4a35nrnawnmvbz5d5dvgy8lhqrlq8w9a"; depends=[Biobase BiocGenerics MASS survival]; }; 1589 - mumosa = derive2 { name="mumosa"; version="1.0.0"; sha256="1wrc13jsiabc9yl9vv1f1q3pwg5a70z6382rqvyzj0jm2sal9766"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; 1590 - muscat = derive2 { name="muscat"; version="1.6.0"; sha256="0gm7nq2hx05d70gjaa3pa5fvm054i6fbz92p6icv0fn22jyqhv2q"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; 1591 - muscle = derive2 { name="muscle"; version="3.34.0"; sha256="01zlbglsag870pb71dzrzqra4l0wrqsi7yvbl1dq2rpla2y1wx5k"; depends=[Biostrings]; }; 1592 - musicatk = derive2 { name="musicatk"; version="1.2.0"; sha256="0mb7svg4ir8z1qdigzgxg5n5nhnacg7vvkvgv98av7af9vgc0zxl"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors stringi stringr SummarizedExperiment tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; 1593 - mygene = derive2 { name="mygene"; version="1.28.0"; sha256="0agg6klx9qdpphdwxhmnywb9p010l680rym7h3cgkwxhfjpf0c6d"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; 1594 - myvariant = derive2 { name="myvariant"; version="1.22.0"; sha256="07c6qszvm5ppgpcbjqbznwv1nw8x2d30cpxlzkcawhp0yi4prwj7"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; 1595 - mzID = derive2 { name="mzID"; version="1.30.0"; sha256="1wsy6frxa5602jqb1nlqv39mzgpid8wfyvb9m2jb6srv7p59rgys"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; 1596 - mzR = derive2 { name="mzR"; version="2.26.1"; sha256="0z4cz6lir9gwzy0hxwv03wv36fkkfdb97p9wv4af020k0zkp3ipr"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; 1597 - nanotatoR = derive2 { name="nanotatoR"; version="1.8.0"; sha256="0jl1kgs45rmlb27avgly723askkklfdvi4z29hrp3lgavk7j6nc4"; depends=[AnnotationDbi hash httr knitr openxlsx org_Hs_eg_db rentrez rtracklayer stringr testthat]; }; 1598 - ncGTW = derive2 { name="ncGTW"; version="1.6.0"; sha256="0pn2250acf3hqh7wddw6zjdfmjz0lcfsqlc9sl90vpqbjsbwxl8v"; depends=[BiocParallel Rcpp xcms]; }; 1599 - ncRNAtools = derive2 { name="ncRNAtools"; version="1.2.1"; sha256="1y60xlf66fchbydrbi5yaxc2hgjin7av1b1s8p964n0wr5xkl35w"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; 1600 - ncdfFlow = derive2 { name="ncdfFlow"; version="2.38.0"; sha256="1lm88qnfv6rnnr7wmgbvwyj272imjjjn7h3agxqqzsbmn8vyrnf0"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; 1601 - ndexr = derive2 { name="ndexr"; version="1.14.1"; sha256="0z3dmfv3rk0pyhh1kpgggfyy7i2gpv9rmvz5hfqq3rzh2gfnhfll"; depends=[httr igraph jsonlite plyr tidyr]; }; 1602 - nearBynding = derive2 { name="nearBynding"; version="1.2.0"; sha256="0ggpirbfb4qzj5bhys1jl4a8z7p4k0b8q76mggh7bizadahpikfm"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1603 - nempi = derive2 { name="nempi"; version="1.0.0"; sha256="1sq5ylfnk8lga0pxmfa5mxxy2l9xijm6yawinqf94g3sw5hy7g80"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; 1604 - netDx = derive2 { name="netDx"; version="1.4.3"; sha256="09c6gqc4w8j9zsysm5ddq29798fgj7544n9n9sys7vyrz3nlq22k"; depends=[bigmemory BiocFileCache clusterExperiment combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment netSmooth pracma rappdirs RColorBrewer RCy3 reshape2 ROCR Rtsne S4Vectors scater]; }; 1605 - netSmooth = derive2 { name="netSmooth"; version="1.12.0"; sha256="1zlsl81jbi0jcfb7xxvffvp9sndj42k81yc5nsrrz2sjrd666r7q"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; 1606 - netbiov = derive2 { name="netbiov"; version="1.26.0"; sha256="015vckpkm79qiaph9r1hi4fy9c2fmvg9a7ahckn8bhq0y23614xm"; depends=[igraph]; }; 1607 - netboost = derive2 { name="netboost"; version="2.0.0"; sha256="1m5sqydfy8rify51ggrzvx007n569a99sfik3f66hvii3kz09w9j"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; 1608 - netboxr = derive2 { name="netboxr"; version="1.4.0"; sha256="0pfw3bil0acjclpff6k3fz2xfc2myjzal8b78pab7dnng19a4n6p"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; 1609 - nethet = derive2 { name="nethet"; version="1.24.0"; sha256="1cr28n11gy5ns3alm3gmlxvy4v7bsiw7gvywdhf7y5xb4lfmrscv"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; 1610 - netprioR = derive2 { name="netprioR"; version="1.18.0"; sha256="0jfp85v0axv6wvl19hxxgmy4hcvjcb0qsb1lxa2zj3wvhngn7c28"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; 1611 - netresponse = derive2 { name="netresponse"; version="1.52.0"; sha256="1lfcandarcklw4x99f1xfcyyg58c19avanq2837r8n6x5dd77xaz"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; 1612 - networkBMA = derive2 { name="networkBMA"; version="2.32.0"; sha256="1990ay4yjbkbwi9khwhipirbj4qi2sqybbakj9jl89j7qng8rbs4"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; 1613 - ngsReports = derive2 { name="ngsReports"; version="1.8.1"; sha256="1j8fx5jf9mj768xizsnrs0wf9sc13i2rvg3shfvy36sqdamna7l8"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; 1614 - nnNorm = derive2 { name="nnNorm"; version="2.56.0"; sha256="0addah6zljlpimcj7a2m6sv8c91q9rrr8x6j103fsvqrdbpkr5m7"; depends=[marray nnet]; }; 1615 - nondetects = derive2 { name="nondetects"; version="2.22.0"; sha256="1kc7km6ac1ygfbna2y8l05h1067i580hc3ra1n09ca34yx6s9kh0"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; 1616 - normalize450K = derive2 { name="normalize450K"; version="1.20.0"; sha256="1dpzmiln6fs68kk4pmdd5z8090m3vgd96xhcy2jwr5b2aw4wqwva"; depends=[Biobase illuminaio quadprog]; }; 1617 - normr = derive2 { name="normr"; version="1.18.1"; sha256="1pcrqhby614rfs3ag148msg9qkj0zrm0dx2p5mka46s9zydxjily"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; 1618 - npGSEA = derive2 { name="npGSEA"; version="1.28.0"; sha256="0ww8i0gjajsipg7h9bdpjsmlk12x980fmkgls0rq5ba6g97mqnnl"; depends=[Biobase BiocGenerics GSEABase]; }; 1619 - nuCpos = derive2 { name="nuCpos"; version="1.10.0"; sha256="02nzzrisd7xybj54261mklpbibnsfhkw0752vc6qzrr05i1a788w"; depends=[]; }; 1620 - nucleR = derive2 { name="nucleR"; version="2.24.0"; sha256="010mkqvs9l7ykgrq28wal2p11h51lrfsf1jf27pbx34wb2xsvcf4"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; 1621 - nucleoSim = derive2 { name="nucleoSim"; version="1.20.0"; sha256="1q5wrrm1aav8abvz45jwv8z6jfyx5y8zzxfzp4ys36b8mdn93fp0"; depends=[IRanges S4Vectors]; }; 1622 - occugene = derive2 { name="occugene"; version="1.52.0"; sha256="19gqkghgb7jscdmb15yl422mln3agjg3xa9371y8d9z9xqcj1rr7"; depends=[]; }; 1623 - odseq = derive2 { name="odseq"; version="1.20.0"; sha256="01g0j07fkr6p3zqlz10mavs63z0d16rcg3qnvnrs8wykpkc34s23"; depends=[kebabs mclust msa]; }; 1624 - oligo = derive2 { name="oligo"; version="1.56.0"; sha256="0fyq77im6s79havjwbchhqhnllxs134jsi98g6msxz66h16lj3al"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; 1625 - oligoClasses = derive2 { name="oligoClasses"; version="1.54.0"; sha256="1nsfyfpj264h6y322pzz0i001b0m862j3skbq5rjwlrj1p8j2gi7"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; 1626 - omicRexposome = derive2 { name="omicRexposome"; version="1.14.0"; sha256="15qqn0vm302sqb91l1kzm9isyz0cz1d94fhlnf29pjgpr3vappma"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; 1627 - omicade4 = derive2 { name="omicade4"; version="1.32.0"; sha256="0qmiw6wic67fdx6p3f4am4z04yrvsy2jb7wsx3m2s6gg1nhaw4a7"; depends=[ade4 Biobase made4]; }; 1628 - omicplotR = derive2 { name="omicplotR"; version="1.12.0"; sha256="1iybnpdxbncvqkqlqlw12l3mxvn3j6pcw9da265zsxnc6ql6v5bx"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; 1629 - omicsPrint = derive2 { name="omicsPrint"; version="1.12.0"; sha256="071m4mq6ilm3k261qyk306gzhyaysxcw857z7pndgbqn697d1zcr"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; 1630 - oncomix = derive2 { name="oncomix"; version="1.14.0"; sha256="1bzz408jym0j5v6yikzbm2ywddb57k6yqfdrnd2yzqhadsyfqs04"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; 1631 - oneSENSE = derive2 { name="oneSENSE"; version="1.14.0"; sha256="1by42sxpbyysk30f9pypqm6ibn9rbcxj8y92ld5ammcwkmvq20f5"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; 1632 - onlineFDR = derive2 { name="onlineFDR"; version="2.0.0"; sha256="0pinq57b69lbk44jk2vx53j8662bg2zpb1d47iji6qca8rx6xg9h"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; 1633 - ontoProc = derive2 { name="ontoProc"; version="1.14.0"; sha256="1v6pmp518r6xjid8h9zq0lz8b62s5gjvndc0n4vpn1phlvqiifpp"; depends=[AnnotationDbi Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; 1634 - openCyto = derive2 { name="openCyto"; version="2.4.0"; sha256="1par1d5pk1rjg15q7i5z5wqma7xg6fycb826a823wk8wr52a885x"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; 1635 - openPrimeR = derive2 { name="openPrimeR"; version="1.14.0"; sha256="0z56bln90fcdqmf3f1mmkj7d12d72jx3287ipx6bdc34728rxnk6"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; 1636 - openPrimeRui = derive2 { name="openPrimeRui"; version="1.14.0"; sha256="1q7rm4w1vv84jigwighinb7jwdrsn7m7pifra35mg98c22pmagvk"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; 1637 - oposSOM = derive2 { name="oposSOM"; version="2.10.0"; sha256="0d8kxyfvy45c6xihh7rzwyc0kgdkb7lwxdl252p3gyzh3bl4548p"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; 1638 - oppar = derive2 { name="oppar"; version="1.20.0"; sha256="1pzxhl6hibv3z2ws0sk71n60d6sfsl71jxii5ajfrx6zli7kr7av"; depends=[Biobase GSEABase GSVA]; }; 1639 - oppti = derive2 { name="oppti"; version="1.6.0"; sha256="1rqnvrq2zkizb8vkkpaliy228s7dhznx4qppfsljhl958h8gkich"; depends=[devtools ggplot2 knitr limma pheatmap RColorBrewer reshape]; }; 1640 - optimalFlow = derive2 { name="optimalFlow"; version="1.4.0"; sha256="0xjkikyz81dx2n2lx1n0wqwssnk7hiwnd3djhq8f5aaskgim8cq5"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; 1641 - pRoloc = derive2 { name="pRoloc"; version="1.32.0"; sha256="096x6kgzpbx4xylb330ryiwbh0r347cbv732f5my97g9m3bb2n5p"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; 1642 - pRolocGUI = derive2 { name="pRolocGUI"; version="2.2.0"; sha256="0gwgiv91b9rpwiwibhrb1p4bv4qx45jb2xy2mlhlw050z719wc5n"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; 1643 - packFinder = derive2 { name="packFinder"; version="1.4.0"; sha256="12ad2wdk2hmwrb6qsqfp6mqfkkc970d9g0jz5bx47g43fdfasc5f"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; 1644 - padma = derive2 { name="padma"; version="1.2.0"; sha256="15h32pf87ml4rdr6ywbdnb55g7i0ikznvxjlnavpqzx06zdhbpfc"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; 1645 - pageRank = derive2 { name="pageRank"; version="1.2.0"; sha256="0493w9kanvivhi1r58gyqs5gmc0vz5rvd7hjj4wvrl16ji2pnjsz"; depends=[GenomicRanges igraph motifmatchr]; }; 1646 - paircompviz = derive2 { name="paircompviz"; version="1.30.0"; sha256="04v9s3nvcafc2m921sn1s276ng6gs8j7axa9alyxkswgcqcad1c1"; depends=[Rgraphviz]; }; 1647 - pandaR = derive2 { name="pandaR"; version="1.24.0"; sha256="1ps1lq14hkpp5p8fwcpz1vqsznrrnlbzn7y4fv7ccymzsk679ijj"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; 1648 - panelcn_mops = derive2 { name="panelcn.mops"; version="1.14.0"; sha256="16whxkrvd0xkdiw4pf0azvglxnpwlwqwh3k7spd42kkv0lj9wzm9"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; 1649 - panp = derive2 { name="panp"; version="1.62.0"; sha256="0a1h0gb8cchh7wf71i63sg8r6cdz794hk7j7a0zgd2kq9mdpfl1a"; depends=[affy Biobase]; }; 1650 - parglms = derive2 { name="parglms"; version="1.24.1"; sha256="0vw42bap8vzdxx1bbhqrxyq41pvy2wq1jna9al56bw8zpfbpgj7y"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; 1651 - parody = derive2 { name="parody"; version="1.50.0"; sha256="1ff8c1wg9fnjdahzi1v7ddkvwx399awm807bx3c9szxm9dc75xjj"; depends=[]; }; 1652 - pathRender = derive2 { name="pathRender"; version="1.60.0"; sha256="12cx9j05hdf9la1nwxllynm82wmsjcyzmgqiil1vp25jr1cfh23i"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; 1653 - pathVar = derive2 { name="pathVar"; version="1.22.0"; sha256="0b95g4v58r101aj2q8pnbcv036w1yxi1qy54pw0b5r6383rm8nqd"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; 1654 - pathifier = derive2 { name="pathifier"; version="1.30.0"; sha256="1pck2rmbj81hwdilvf30jynkqlwmkx09ac96xmqa0i8d2yald53j"; depends=[princurve R_oo]; }; 1655 - pathview = derive2 { name="pathview"; version="1.32.0"; sha256="1fank0qavv9ikmzxvms8mky2wbzny02rfqkvsqzma26r3vl4r1g1"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; 1656 - pathwayPCA = derive2 { name="pathwayPCA"; version="1.8.0"; sha256="0k4qjypvlgjajvmpgl8jmrcw2czpb2dv69wi5f9pxqy969j2mbhx"; depends=[lars survival]; }; 1657 - paxtoolsr = derive2 { name="paxtoolsr"; version="1.26.0"; sha256="0kakb24hvi49z2wk9vlxyry6y85kdky02710rrxd5fwd4nibj1kz"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; 1658 - pcaExplorer = derive2 { name="pcaExplorer"; version="2.18.0"; sha256="1ia3kiiv53n4wgj62icmfskiw796cc8yvg2w3lzi60p1yl49306d"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; 1659 - pcaMethods = derive2 { name="pcaMethods"; version="1.84.0"; sha256="1ccqsxn487dy92c2d1iffh9917z4zq5ia92zv2h6pi00jjc6ymb5"; depends=[Biobase BiocGenerics MASS Rcpp]; }; 1660 - pcxn = derive2 { name="pcxn"; version="2.14.0"; sha256="1np3gj0i300dm6yc2bg938np6vmhrr0fm287kdhgz3a4m3lx4m6b"; depends=[pcxnData pheatmap]; }; 1661 - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.56.0"; sha256="0a6g5swfjc4mi9b1jamx3m6sb5a5q2r2vzfzn4jfh813z7fg58yz"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; 1662 - peakPantheR = derive2 { name="peakPantheR"; version="1.6.1"; sha256="02kmkwjsbfwwy6062w8vyp68aqbw77jf9zxq43pqwa2c69hglv8q"; depends=[doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders shinythemes stringr XML]; }; 1663 - peco = derive2 { name="peco"; version="1.4.0"; sha256="03cfndwisy6gmk1779j2m4nslzxpgmb7f8lyrdh8cvgzqpgf13xc"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; 1664 - pepStat = derive2 { name="pepStat"; version="1.26.0"; sha256="14jivr0jv8r6xpz2ragg5z48ckzvjx7sqnq1bcbbwavf7gcafj64"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; 1665 - pepXMLTab = derive2 { name="pepXMLTab"; version="1.26.0"; sha256="1nwhkm626dqrvp3vh10hnr1nvwq3rxcga2ljj547aib919gdax1b"; depends=[XML]; }; 1666 - periodicDNA = derive2 { name="periodicDNA"; version="1.2.0"; sha256="0sh4y6gzxchbx43pfrm6ck3idk08zd7f3lw7hc37j6avkp6sj3r6"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; 1667 - perturbatr = derive2 { name="perturbatr"; version="1.12.0"; sha256="01aa5g1g82rr6lbrjj69jfxgm52l1f6di0fnjbq2yz79hx60ba0g"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; 1668 - pgca = derive2 { name="pgca"; version="1.16.0"; sha256="017ljgvn7xms49xnz5r0by4nvhy5q2p0xh5lx1nj32idgxbh5bcc"; depends=[]; }; 1669 - phantasus = derive2 { name="phantasus"; version="1.12.0"; sha256="0sfpxlvcgv0blg5n130f6d0l655r05sgz5cfnrmviv1sc2yvf2hd"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; 1670 - phemd = derive2 { name="phemd"; version="1.8.0"; sha256="13lysbwmw3w69q7js9xzlj01k8ffpqw32r7dvnkifrwfkvdhzdrw"; depends=[Biobase BiocGenerics cluster cowplot ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; 1671 - phenoTest = derive2 { name="phenoTest"; version="1.40.0"; sha256="13sskjbpk6ncr1h4hxk5wzhp3bhb7mww53rv01psa5254az759c5"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; 1672 - phenopath = derive2 { name="phenopath"; version="1.16.0"; sha256="187zqqsi4gbvzvbgddrk46s3npih2w0kqq22bdsf9qngyzcz5wxz"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; 1673 - philr = derive2 { name="philr"; version="1.18.0"; sha256="0ly13gb3kz3p13grb3kzkm84m3m8f1yb8isjy70kq4isr7vapf85"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; 1674 - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.16.0"; sha256="0fasblqgf5c6j07mj6f3zxb42k87aqkb21fs0f9awpp7shm6k4vh"; depends=[matrixStats plyr]; }; 1675 - phyloseq = derive2 { name="phyloseq"; version="1.36.0"; sha256="192gv00xfnv9ljkgb0iw8sqzsay4f3vllyyc1slzsn15713fc4pi"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; 1676 - piano = derive2 { name="piano"; version="2.8.0"; sha256="0zzz72iffxx6j0zpli3rd0fh6k1s7qnsih28102sxnwvj5gv5a7l"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; 1677 - pickgene = derive2 { name="pickgene"; version="1.64.0"; sha256="0cnqf9cj2hvpi8fwbq48lga6hjv6qs6wpadazr559z9vdybzlbhc"; depends=[MASS]; }; 1678 - pipeComp = derive2 { name="pipeComp"; version="1.2.0"; sha256="1gfcnw9chm5r8s0lam4vkx75hbhrh37gw616irr40p8lc30kk0r7"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; 1679 - pipeFrame = derive2 { name="pipeFrame"; version="1.8.0"; sha256="04jcwcliv0vjmgj0w0wyh7kdxz40dg7s7916d96bgmkirb1yr19j"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr visNetwork]; }; 1680 - pkgDepTools = derive2 { name="pkgDepTools"; version="1.58.0"; sha256="1i02ifg562k20p28l6cm4l28c9j0iqlly1ii50zm5872nqpqz42q"; depends=[graph RBGL]; }; 1681 - planet = derive2 { name="planet"; version="1.0.0"; sha256="0ajaa066fahfjv2k49sira4gyggxi699hvz8xl50y7a1xbvjir8p"; depends=[dplyr magrittr tibble]; }; 1682 - plethy = derive2 { name="plethy"; version="1.30.0"; sha256="1ncjmlnrjhqqnsfp191bwa4gnvbs1n8gji83f2cwvjlbiad7jl7k"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; 1683 - plgem = derive2 { name="plgem"; version="1.64.0"; sha256="1rz5jk5bgpk7gjknx79jyslahjg46q2f4bx6dgd0vwmarc29a45z"; depends=[Biobase MASS]; }; 1684 - plier = derive2 { name="plier"; version="1.62.0"; sha256="1n2g7nm36i86v00nb6zkfkr7b8ns0mw6wqz0381bxwzpvvsb48dl"; depends=[affy Biobase]; }; 1685 - plotGrouper = derive2 { name="plotGrouper"; version="1.10.0"; sha256="1sq7hly0y4lx2fpxdswq2s3pjkfxssna3jiklr5dpc9241cfsxjg"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; 1686 - plyranges = derive2 { name="plyranges"; version="1.12.1"; sha256="0ws6m6mq69bj16kwr812z0sgwhj0mxyh19bc9qyfka1pwpkabm6m"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; 1687 - pmm = derive2 { name="pmm"; version="1.24.0"; sha256="0hd2w76qdb6hibs9xhxima3s6dk6kf0vvd3hs7xyxdbwcmhz3ka6"; depends=[lme4]; }; 1688 - pmp = derive2 { name="pmp"; version="1.4.0"; sha256="1lfbf4y02bq9kkw8bikf7v1n0zsqd4ncn3r4fm9hzfvzrsdcrz10"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; 1689 - podkat = derive2 { name="podkat"; version="1.24.0"; sha256="033lkq9h6qw3yyr8zv63jsyrm21kswngz538szjbpvky0x4avakf"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; 1690 - pogos = derive2 { name="pogos"; version="1.12.2"; sha256="008kp86wibbj5sd4814s4056ayk1aldapbvcxn775pw3rdki0rxl"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; 1691 - polyester = derive2 { name="polyester"; version="1.28.0"; sha256="0f7hp7f42j0k12xhxg4zvsnhakn8xrs0iv0kqanyvjd0krxf6nf0"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; 1692 - powerTCR = derive2 { name="powerTCR"; version="1.12.0"; sha256="1il4xh3njgh2z0gdwkzpcyzrd8q0sbvlfsxb87lskf0rsqmzvvmj"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; 1693 - ppcseq = derive2 { name="ppcseq"; version="1.0.0"; sha256="0ba8qh4rdhydi5a99q7g0c9gdn72wzby9is968x88g1ax17bwmyc"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; 1694 - ppiStats = derive2 { name="ppiStats"; version="1.58.0"; sha256="1gwffsjpgcxrl43n0knvzwh10fsdlra9p4q585s0s865qmhakf3y"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; 1695 - pqsfinder = derive2 { name="pqsfinder"; version="2.8.0"; sha256="0nk08x0l4xisbwkp2nc8rb3l5xgcah5xmaypws4s1y8ak4q3nqf3"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; 1696 - pram = derive2 { name="pram"; version="1.8.0"; sha256="1g60hy6ia563ajivrj9fqzv0ql7cnyw6ggf3j5s4xm47s9ddymb8"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; 1697 - prebs = derive2 { name="prebs"; version="1.32.0"; sha256="17xnphbrx538wywfzisagrdqqxf8gi8bia50n57finclm9bj22jf"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; 1698 - preciseTAD = derive2 { name="preciseTAD"; version="1.2.0"; sha256="15f34jk29fbsmjgcixkbyga5xm49lpyxsppafr7lawxnv80fkzy5"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges IRanges ModelMetrics pbapply pROC PRROC randomForest S4Vectors]; }; 1699 - predictionet = derive2 { name="predictionet"; version="1.38.0"; sha256="0ygxkby1s54jxybsrh4xwi9jnp3r6cc98rn01qzlav1qnqavmhy1"; depends=[catnet igraph MASS penalized RBGL]; }; 1700 - preprocessCore = derive2 { name="preprocessCore"; version="1.54.0"; sha256="17a00blz4kvhmsk92bp5alj9kdpy7h1id7nk4vqxakhkb2jabr20"; depends=[]; }; 1701 - primirTSS = derive2 { name="primirTSS"; version="1.10.0"; sha256="1bmskpidn16s5m44xjhz5phpmffsgp482r7dfjh6xx91csy82kc7"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; 1702 - proActiv = derive2 { name="proActiv"; version="1.2.0"; sha256="1rrvq4z05rk7kxrh4v3vikws9v62mvy7bqfirkwv5mgv90i0ipc6"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges rlang S4Vectors SummarizedExperiment tibble]; }; 1703 - proBAMr = derive2 { name="proBAMr"; version="1.26.0"; sha256="07nv5b3dlm5wb5gs65ky4fxbpxwgxq0rgn73lgcaxha9ccmws2jp"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; 1704 - proBatch = derive2 { name="proBatch"; version="1.8.0"; sha256="1vf126w2vwc7aaw3h3bzd6h3ll81615mbmi0svlqghzch19x9nc4"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; 1705 - proDA = derive2 { name="proDA"; version="1.6.0"; sha256="1p34fj037rq4x1x41lxh5qn0wi92ykdd7az4q0zj0rz53hmklr8m"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; 1706 - proFIA = derive2 { name="proFIA"; version="1.18.0"; sha256="00caarlcxfk8b2f6q001bafv9gx546flfxq0kgjv802dca2rdpjv"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; 1707 - procoil = derive2 { name="procoil"; version="2.20.0"; sha256="0j38p3qr0zadam0zgi45z2bm4xspxczxknq7pbs2sza6xsvjcbkz"; depends=[Biostrings kebabs S4Vectors]; }; 1708 - profileScoreDist = derive2 { name="profileScoreDist"; version="1.20.0"; sha256="15y76zyqslcmw0vdqngp2gl6dizaf7ihlf30apjj54z478cyhz5k"; depends=[BiocGenerics Rcpp]; }; 1709 - profileplyr = derive2 { name="profileplyr"; version="1.8.1"; sha256="09f5c60cyg6hn6d5d4s8l1z9sknv3chw6cvpgbrkmvmafm4namkg"; depends=[BiocGenerics BiocParallel Cairo ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 1710 - progeny = derive2 { name="progeny"; version="1.14.0"; sha256="10vpjvl4wps857xiy8rpzr82jzdfbc5rgwh3ir3my26lfws4hfz8"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; 1711 - projectR = derive2 { name="projectR"; version="1.8.0"; sha256="0c7vi6x8jdwpl6pcih1r9kdwrjjjf7swyx124c2w2fq2f115qp07"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; 1712 - proteinProfiles = derive2 { name="proteinProfiles"; version="1.32.0"; sha256="1rkl5v7marwxs7069hhsvp69inlpvbklpgzn58yfsk47d7ljrhhr"; depends=[]; }; 1713 - psichomics = derive2 { name="psichomics"; version="1.18.6"; sha256="0pny5y04xqk9gn1mwaly6ml1i69jmz7d9yl0vzflflhnvbr4lm11"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; 1714 - psygenet2r = derive2 { name="psygenet2r"; version="1.24.0"; sha256="185z387cdipac0sljgfx3xc39sv4p7f26amaw5lfnf822ibmhf5d"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; 1715 - ptairMS = derive2 { name="ptairMS"; version="1.0.1"; sha256="1ss1dwbdls977l2hjjvfl4cjyd9f822wh0bjyg4dhq33mypr7sfj"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; 1716 - pulsedSilac = derive2 { name="pulsedSilac"; version="1.6.0"; sha256="1vvcrd38v1x602z72hxvbb66xg1r6p2a1izmkivdifkzy0i5m1vl"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; 1717 - puma = derive2 { name="puma"; version="3.34.0"; sha256="0bqc37bj2hmwjiri5x2x0pahhvz1zaqaphandv6v3zjrabgv60dm"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; 1718 - pvac = derive2 { name="pvac"; version="1.40.0"; sha256="1qdi6m2xdk751xkdxbm9wk16x5r2j8diggr7h4x953wwgc9wfi3m"; depends=[affy Biobase]; }; 1719 - pvca = derive2 { name="pvca"; version="1.32.0"; sha256="0kax1szfb1d869xkmvylwfcy0acisvkhgvgwm1z4nd2gmg252655"; depends=[Biobase lme4 Matrix vsn]; }; 1720 - pwOmics = derive2 { name="pwOmics"; version="1.24.0"; sha256="0rybmc70vwwhlhxcbalxw2iywzxchynbc39kig4cy33nb8hamzzk"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; 1721 - pwrEWAS = derive2 { name="pwrEWAS"; version="1.6.0"; sha256="0kzkq2yf9z6wqn38kanf0axy9i522yi65qwr2xpgw6p3j6ng85ld"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; 1722 - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.10.0"; sha256="02ryj0gn4ks9rchx5xg5lfyyrprkzjfghrmgf0hbjsar54d8yy1k"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; 1723 - qckitfastq = derive2 { name="qckitfastq"; version="1.8.0"; sha256="17vclhgbvhyl427pp5yhjkkdn0psplxa89kggvpcn5v4dzxwd9a6"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; 1724 - qcmetrics = derive2 { name="qcmetrics"; version="1.30.0"; sha256="0vz5wpan18kavsm5kynjcriklp407icnb3bcbx36mh3rrhv6nbsq"; depends=[Biobase knitr pander S4Vectors xtable]; }; 1725 - qpcrNorm = derive2 { name="qpcrNorm"; version="1.50.0"; sha256="0ijvp0j4rl0r0mg7kb483hayqsl0lj5fmfwm888sqlymbxdqij35"; depends=[affy Biobase limma]; }; 1726 - qpgraph = derive2 { name="qpgraph"; version="2.26.0"; sha256="0m1kcdjs4vilyb8yiqck62h47yjfalydz62gjm3nb1j1pqyq5m14"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; 1727 - qrqc = derive2 { name="qrqc"; version="1.46.0"; sha256="0bhk4sj815hdgrpk8jyw01pjdlvnd2rhq8as5s3yk3i5zzwd7f1v"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; 1728 - qsea = derive2 { name="qsea"; version="1.18.0"; sha256="0qs7f5yrszyimb2lx8kl374svx8yv5bnpjkwgrqbx9lr4ix7jc33"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges KernSmooth limma MASS Rsamtools rtracklayer zoo]; }; 1729 - qsmooth = derive2 { name="qsmooth"; version="1.8.0"; sha256="13fryldfkbkralm58z4c48slh8d9ckk2h95pvl3s0z9w1i67jf87"; depends=[SummarizedExperiment sva]; }; 1730 - quantiseqr = derive2 { name="quantiseqr"; version="1.0.0"; sha256="0701msl79asnqmss3ci7jnir5a01g50lbyxhkd5p9cj7a2l8qymd"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; 1731 - quantro = derive2 { name="quantro"; version="1.26.0"; sha256="1fkma2ic448h2lrlza8ipg65gpfsz4fhlxcnjpmzhhmzp2xi2p4a"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; 1732 - quantsmooth = derive2 { name="quantsmooth"; version="1.58.0"; sha256="0nq0khip6v67g3d3gyzg18xwhfxz34l8vmki1p8m9rqa1iq0i43x"; depends=[quantreg]; }; 1733 - qusage = derive2 { name="qusage"; version="2.26.0"; sha256="1rg8y5jqw1ckhmqvg4k4di4l4hf8cvmaq3wzvhb2l2fqkl4zhjh7"; depends=[Biobase emmeans fftw limma nlme]; }; 1734 - qvalue = derive2 { name="qvalue"; version="2.24.0"; sha256="0xssanffh1hr7f48mnazcpwi25rdp7mxlyb9nbf4q2mp7m40jnpm"; depends=[ggplot2 reshape2]; }; 1735 - r3Cseq = derive2 { name="r3Cseq"; version="1.38.0"; sha256="023xwqsc1da4sdvnlhakb7mj8wab9rvg592zy1rxz51j2hwwhkx0"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; 1736 - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.32.0"; sha256="02pgrklln1srfzq907sk1h543in7vs6zpwfq46kxq0xhr40ryd20"; depends=[data_table XML]; }; 1737 - rCGH = derive2 { name="rCGH"; version="1.22.0"; sha256="039zks8h1dgrr9gmk2gb7rxvjb27j532klbak1c2z2j1a138cvhc"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1738 - rDGIdb = derive2 { name="rDGIdb"; version="1.18.0"; sha256="1nanh1gnsd7wgi4pm4jw17agqk3c3yaqcay9dxl6symz685f84br"; depends=[httr jsonlite]; }; 1739 - rGADEM = derive2 { name="rGADEM"; version="2.40.0"; sha256="05drbhjqn5kik6k4h03vr3d2b6pv5rm65lsnkyx4caxxcdii4jzm"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; 1740 - rGREAT = derive2 { name="rGREAT"; version="1.24.0"; sha256="0ads9c9i8b39wvjih057zlyivj8zpsqjxf6r97yflz4sbi1jmcji"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; 1741 - rRDP = derive2 { name="rRDP"; version="1.26.0"; sha256="0a6j8786njbx7ja5053xzr40iqif2vm6zq9qxwm7mmk0k6dh2nm6"; depends=[Biostrings]; }; 1742 - rSWeeP = derive2 { name="rSWeeP"; version="1.4.0"; sha256="0p9743kpk3xabq698yb5xwj6m6v193zvm0b7ddg4h3d6nzz45k6p"; depends=[pracma]; }; 1743 - rScudo = derive2 { name="rScudo"; version="1.8.0"; sha256="1wqrzgj595h7agp3hm5zgnig7f6cmw6y0aq0msq9w8rm97n6nyrp"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; 1744 - rTRM = derive2 { name="rTRM"; version="1.30.0"; sha256="1j127s66mqillmy09h8asdmif043w1yjqzyfq70k5gcz3qr69kyd"; depends=[AnnotationDbi DBI igraph RSQLite]; }; 1745 - rTRMui = derive2 { name="rTRMui"; version="1.30.0"; sha256="081x7ym8cnnhdff4dfxpwypk04fwg7d2w5b58kcr9fqb4d0vx72k"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; 1746 - rWikiPathways = derive2 { name="rWikiPathways"; version="1.12.0"; sha256="12s4zd6qkvs2van7k34i5w7zd18c5bn72gbwyk3g6dsq84h6h5h7"; depends=[data_table httr RCurl rjson tidyr XML]; }; 1747 - rain = derive2 { name="rain"; version="1.26.0"; sha256="1llzn7dhhj38mr36bzy063vg2rgbrhpx4pzkcnc86psrfbh2b786"; depends=[gmp multtest]; }; 1748 - rama = derive2 { name="rama"; version="1.66.0"; sha256="19as3qxcvkqb9ly9jvp1hy7avdyarbvavhsvzykf29rna7lz6s9g"; depends=[]; }; 1749 - ramr = derive2 { name="ramr"; version="1.0.3"; sha256="1zind0908rqkb6f6i5224ygzpl5spaka332x8dxby699k4hgjbpl"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; 1750 - ramwas = derive2 { name="ramwas"; version="1.16.0"; sha256="0jdiaxi1ddbbyjkbi0wv5gzw8q2z7d1l18qcqjwll48ml34a5f88"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; 1751 - randPack = derive2 { name="randPack"; version="1.38.0"; sha256="1223g4971gizsq6vd0hkgjkg3192c7z9xc9fpcnq06913q4gv78d"; depends=[Biobase]; }; 1752 - randRotation = derive2 { name="randRotation"; version="1.4.0"; sha256="0x4gji435lh1l8ncss953qq4q33ygbqjnqbasy664sajhqwfaqv9"; depends=[Rdpack]; }; 1753 - rawrr = derive2 { name="rawrr"; version="1.0.3"; sha256="1i6lrb8lmyzan6g3i9cycw71s31z5d4szsmc1iq4q3xk98kavwff"; depends=[]; }; 1754 - rbsurv = derive2 { name="rbsurv"; version="2.50.0"; sha256="0x4v1byb44pgfrl3dj30yx6gxi8gfyjicd128nii8ch9rhhxnjl9"; depends=[Biobase survival]; }; 1755 - rcellminer = derive2 { name="rcellminer"; version="2.14.0"; sha256="091vsjjq3zwn7g39zx43f0jkqh5x89bm0k93a6dzi5l2drf3nb3h"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; 1756 - rebook = derive2 { name="rebook"; version="1.2.1"; sha256="1z597559a26lzgs1gy2cns4gqy4dfpx3anlfshxdr2y48dwrg3h1"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; 1757 - receptLoss = derive2 { name="receptLoss"; version="1.4.0"; sha256="17fpvpz73f6h650sbfvnvvcmabxxzjg134msfidff35n63j7jkkn"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; 1758 - reconsi = derive2 { name="reconsi"; version="1.4.0"; sha256="0bpfxhbgrxf84qxzz7w4spxm91m34n8ghigf1l78hdsin98x8zy0"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; 1759 - recount = derive2 { name="recount"; version="1.18.1"; sha256="0lkanj072r7vz95cp90chrb3kfgkkvsd8bvvizvw4rasfljbb01d"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; 1760 - recount3 = derive2 { name="recount3"; version="1.2.6"; sha256="0j0syvl3yzd8q8yba9s3r109m255qrs7zy6abhypmq1ds842gvpr"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; 1761 - recountmethylation = derive2 { name="recountmethylation"; version="1.2.3"; sha256="0k5hnc0ywppdyr8y8y90p5iidrm3mwsc2c1ihjb4v3cgf3w9nby3"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; 1762 - recoup = derive2 { name="recoup"; version="1.20.1"; sha256="1sspqlqlm4ifxr74yp3621qhnyh3x989nzvxgah142lf0p3ch77m"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; 1763 - regionReport = derive2 { name="regionReport"; version="1.26.0"; sha256="044hwavvi4mp6j6sxjsdm88dbzxjg4p18qw4y0bp2zsj9swf8ffc"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; 1764 - regioneR = derive2 { name="regioneR"; version="1.24.0"; sha256="0xzzaz3cl6pyxfsg0d931v8k15wbd05s5mnsb7igxldc5qqg3nsl"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; 1765 - regsplice = derive2 { name="regsplice"; version="1.18.0"; sha256="0vnq82xhj9401j17zb0p40ls6aqwng7ganllkblkh744bqlqrbd6"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; 1766 - regutools = derive2 { name="regutools"; version="1.4.0"; sha256="0l8w0qawz0hfp6blshnx6r76ccgal7vc3g4vm0idc6f2s0fvy0hm"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; 1767 - restfulSE = derive2 { name="restfulSE"; version="1.14.2"; sha256="1kqjzi76v4vla11g8vp5wdasgpz2wb82lfbp7j58jh13vipdycgl"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; 1768 - rexposome = derive2 { name="rexposome"; version="1.14.1"; sha256="0r70picz7id60ypcpzdm0jg4yrxmwwxsqw6brm732wf634r78l4y"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; 1769 - rfPred = derive2 { name="rfPred"; version="1.30.0"; sha256="1pv3rchf38kvds3bk0y8v7wwx6pcky3nzc2d4d8pz6ppcmqs5174"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; 1770 - rfaRm = derive2 { name="rfaRm"; version="1.4.3"; sha256="096ifcp7ic9hfj2z2mnkpv5xnl4hcryyl25wq7brbs6rqd9ym7sv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; 1771 - rgsepd = derive2 { name="rgsepd"; version="1.24.0"; sha256="196ngkx02q912xsns30q8if8002ic3r8ymrg1k7z90b4d3dz0ywr"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; 1772 - rhdf5 = derive2 { name="rhdf5"; version="2.36.0"; sha256="1a5kw9ry9cr258al0x3q0ss5xn1ymscdypx51vzzgzamhy7dqakz"; depends=[rhdf5filters Rhdf5lib]; }; 1773 - rhdf5client = derive2 { name="rhdf5client"; version="1.14.2"; sha256="10lsijall2mvwnbfzgfbdnzh0fcii22qlvk0530rbggpp2l4lwkz"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; 1774 - rhdf5filters = derive2 { name="rhdf5filters"; version="1.4.0"; sha256="133v0s452acspi4dbf6gsa2xrr0qza86jdjjbpwhdv6zfd1djbgc"; depends=[Rhdf5lib]; }; 1775 - riboSeqR = derive2 { name="riboSeqR"; version="1.26.0"; sha256="1m5w2j35wr0lzwir4s58z757vrcsj5mglsqrkvs241k0hlmn06qa"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; 1776 - ribor = derive2 { name="ribor"; version="1.4.0"; sha256="1q534sg3iivkmgipa74bkqsfc10zvcb707r8wmlmpg3735za24xg"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; 1777 - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.4.0"; sha256="1qgjixj8vqnw5a4ycd75m9d1vcny0vd72h10nmhh2c8rjnifdryf"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; 1778 - rmelting = derive2 { name="rmelting"; version="1.8.0"; sha256="1308sf6lib6ll04mll7iycnh123sjj09kmazicg9cfd1jcp17g01"; depends=[Rdpack rJava]; }; 1779 - rnaEditr = derive2 { name="rnaEditr"; version="1.2.0"; sha256="0832569shfpbq06b0bmjzy5xf9z6gahpq178z4hypbnnmwvjip8z"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; 1780 - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.22.0"; sha256="0xhak5wmah6i1fpcz70d2blphhyxzyyah8lvgbylrmy0xmdfasbm"; depends=[RColorBrewer]; }; 1781 - roar = derive2 { name="roar"; version="1.28.0"; sha256="0vp0n90rvjm8rzwkbrxa3fasb9val56bz2srz72xwsl3jzb5yk6w"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; 1782 - rols = derive2 { name="rols"; version="2.20.1"; sha256="156ysd39zl20zzw7wsv70cngs75yiv3w90i365l2rjhqvqkya63b"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; 1783 - ropls = derive2 { name="ropls"; version="1.24.0"; sha256="1j99kdywyljqzdcns5ysh590w4w8iiwzpddpfk5c8d4whax7vk5b"; depends=[Biobase MultiDataSet]; }; 1784 - rpx = derive2 { name="rpx"; version="2.0.3"; sha256="0yp9d5cbs6z510bylydwpz6r02rn755ida7vvvda1fhh3q061r0f"; depends=[BiocFileCache jsonlite RCurl xml2]; }; 1785 - rqt = derive2 { name="rqt"; version="1.18.0"; sha256="011qmbbgnaas3j8077x8yghz6249v11zz5ic6bj3yndfqxsx327i"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; 1786 - rqubic = derive2 { name="rqubic"; version="1.38.0"; sha256="1jhawn72s5h2pfbyhlc0yldmc9wbdwrb5iwib7mkagj2mwwfsp32"; depends=[biclust Biobase BiocGenerics]; }; 1787 - rrvgo = derive2 { name="rrvgo"; version="1.4.4"; sha256="0h77mzr792dhjb410c32g6fhivl8786v88pbcpbbkdqcwnxfxny0"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; 1788 - rsbml = derive2 { name="rsbml"; version="2.50.0"; sha256="017xwra6ms7kx6sg3ksw1vr9zn23imc2qjgpmjikx7mgbak125xh"; depends=[BiocGenerics graph]; }; 1789 - rsemmed = derive2 { name="rsemmed"; version="1.2.0"; sha256="10rzf1hh0vpc9mhvzmhl75cinfr13qnjsqdf47pk0rg19wdw6021"; depends=[dplyr igraph magrittr stringr]; }; 1790 - rtracklayer = derive2 { name="rtracklayer"; version="1.52.1"; sha256="11w6dx09pb49lin1gr9q88xn7ixh9jd5z6m9z27djchm0nw10lx9"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; 1791 - runibic = derive2 { name="runibic"; version="1.14.0"; sha256="0xk7038h56l1im6akqj6bph7b19z1imikp9pbnpxr2nvk5xpbl78"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; 1792 - sRACIPE = derive2 { name="sRACIPE"; version="1.8.0"; sha256="03xj1i0wp79l3nb5fh9jlw7vrnccp167zx6dg49p690rsxyzbik4"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; 1793 - sSeq = derive2 { name="sSeq"; version="1.30.0"; sha256="0pcc18sgd28vhqgq9wz71dn8s7bfzq738qvgzxyyr995m9k8dqzk"; depends=[caTools RColorBrewer]; }; 1794 - safe = derive2 { name="safe"; version="3.32.0"; sha256="058xya9g61gskcfv3vxwadszpkvhkiip6vdn4rpaf2jf07k5fwlr"; depends=[AnnotationDbi Biobase SparseM]; }; 1795 - sagenhaft = derive2 { name="sagenhaft"; version="1.62.0"; sha256="0hgb9zyzcxcjcqlch3hax3rvvk2p0k3bqfbfbdd4vg43vf9f8119"; depends=[SparseM]; }; 1796 - sampleClassifier = derive2 { name="sampleClassifier"; version="1.16.0"; sha256="0499k1959hls94f59cc0w0mcg7j8hb5xrp5sn5d3kmv5b3b104zx"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; 1797 - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.2.0"; sha256="1mpakmwm5gng05wvnfrb5w2z64ihq40wvr865mq3lrl1xvfhpj3h"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra kableExtra logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; 1798 - sangerseqR = derive2 { name="sangerseqR"; version="1.28.0"; sha256="0bsm027bqyr3b7c2fd7j7bzaklbsbp7bwn4343xxbzlwjdvp3ywc"; depends=[Biostrings shiny]; }; 1799 - sarks = derive2 { name="sarks"; version="1.4.0"; sha256="073hhbvc67lvxa33i3fyxvh5ncr2b78j2b4xck4glwdqkbrdx0rf"; depends=[binom Biostrings cluster IRanges rJava]; }; 1800 - satuRn = derive2 { name="satuRn"; version="1.0.0"; sha256="08gccrx8gp89q34n8ayag8j2bvq49p94b5cpfqvjpp5bbaq5npgf"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; 1801 - savR = derive2 { name="savR"; version="1.30.0"; sha256="1ynp334hm76zf05j4f6vha6r16s5f2ncxx9yviq4rxidk9r723jq"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; 1802 - scAlign = derive2 { name="scAlign"; version="1.6.0"; sha256="0g1gmb2fy9yrirsnzlqf02vapzcp3569fbcq6cjm0xggv7r07a9j"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; 1803 - scBFA = derive2 { name="scBFA"; version="1.6.0"; sha256="19jwlp4pym307xxyabnn0vwcya45kjvb0wcr5gl3adfj1wsbrm20"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; 1804 - scCB2 = derive2 { name="scCB2"; version="1.2.0"; sha256="1w311bg8xhvgm49z9l1p9y50gr3q8z4hixv7vdwfgr067pivz5f8"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; 1805 - scClassifR = derive2 { name="scClassifR"; version="1.0.0"; sha256="09gfr3yf3wvxiaz4s2bnmxm3khmhwa0zcqxnblgwszg393nawgrh"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; 1806 - scClassify = derive2 { name="scClassify"; version="1.4.0"; sha256="1lfspdc3n6cz0w2arqncsafrf0py0v30kv3shvsl596g2dxc1109"; depends=[BiocParallel cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; 1807 - scDD = derive2 { name="scDD"; version="1.16.0"; sha256="1dw9m3m99apmbs32461c6lnmy81n5hxbhz3p8jk419gajkh4v1ji"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; 1808 - scDataviz = derive2 { name="scDataviz"; version="1.2.0"; sha256="0rah7rmybq2qbs1yr9aw74pqqbs8j0ga5jq83jvdnf9b4fql6gvj"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; 1809 - scDblFinder = derive2 { name="scDblFinder"; version="1.6.0"; sha256="1xazz2yzima2igpygyvrsjsbjayk58vxrg2cra0zm0mzam5rda1v"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray igraph Matrix mbkmeans S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; 1810 - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.12.0"; sha256="03v7hsql5zy5s55g77acsbk2v9w4kmsvdm5m0mxj0x94gybik04b"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; 1811 - scGPS = derive2 { name="scGPS"; version="1.6.0"; sha256="0d17nxc3w9cn8h0nw0viv0114zfh9s2plmyhyf6f8pz84m6q16hi"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; 1812 - scHOT = derive2 { name="scHOT"; version="1.4.0"; sha256="0g6i7ab9rz9a6jwhqihlp3hvraqzz54shjddqwjsr7a029bmd1pv"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1813 - scMAGeCK = derive2 { name="scMAGeCK"; version="1.4.0"; sha256="1pya8hlfm7s4sjd9b4sz7nwk1ci2zw4na6q9mrb07fa4j5d1hbcn"; depends=[Seurat]; }; 1814 - scMerge = derive2 { name="scMerge"; version="1.8.0"; sha256="1gp5x3vac0yp6qhcikkrvip0n2b17gmkl4vng0rz4zcr2isdrmpv"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1815 - scPCA = derive2 { name="scPCA"; version="1.6.2"; sha256="0n2hf4bx36j7y02r4m0q29c1d42dlkqc9h98d0y9mvjd51z0vmnn"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; 1816 - scPipe = derive2 { name="scPipe"; version="1.14.0"; sha256="0r2px7ndswbkjls1h4ddaa9lhgxc8y1z8823pvb760jcl9fdijyk"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; 1817 - scRecover = derive2 { name="scRecover"; version="1.8.0"; sha256="0bmyzf5bghyy3ac9pj0hmh0zbcdsp7wrakf8ky0gi6vzpw359szh"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; 1818 - scRepertoire = derive2 { name="scRepertoire"; version="1.2.0"; sha256="0vl55zwr7xsy5bq58nkvdk0mp5k53qnvzva1q8973dii6aa8y1sw"; depends=[Biostrings doParallel dplyr ggalluvial ggplot2 plyr powerTCR reshape2 rlang stringr SummarizedExperiment vegan]; }; 1819 - scTGIF = derive2 { name="scTGIF"; version="1.6.0"; sha256="0m73b2ixwknsdvarskbg0s9wb6kabcn8zjds6pafd0xblsam4r1f"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; 1820 - scTHI = derive2 { name="scTHI"; version="1.4.0"; sha256="0ahjiicpxwg6jrf2jgq8hkfja8ri4w20zvdhn9w9f3h51irlpymg"; depends=[BiocParallel Rtsne]; }; 1821 - scTensor = derive2 { name="scTensor"; version="2.2.0"; sha256="03pdjmwdcylbvn03qyjirw2hsizlgmh200rb71fkza5z4qs1c2yx"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; 1822 - scater = derive2 { name="scater"; version="1.20.1"; sha256="1046fgf93dda3y2z5ilrjdczz7klj67ag63p4p1h03965wpj9vfn"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 gridExtra Matrix RColorBrewer rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; 1823 - scde = derive2 { name="scde"; version="2.20.0"; sha256="09pdxbafnkjb2lydi41p8shf9jrva5nl4jldm5y8gp2g7kxnr5wv"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; 1824 - scds = derive2 { name="scds"; version="1.8.0"; sha256="001y6jlqi5nrfblwfl958jj5f34rzsmil0jicinx6rn8yxp02xl5"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; 1825 - schex = derive2 { name="schex"; version="1.6.3"; sha256="0fvyan2sisn1nqa87wn8xx8ip9c9kz4fc92p1fzdl5xshli8qcka"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; 1826 - scmap = derive2 { name="scmap"; version="1.14.0"; sha256="1m7iy7y089az9r34lrx06vq34ygpf7by1y5011f7w9xp1rjf6yxj"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1827 - scmeth = derive2 { name="scmeth"; version="1.12.0"; sha256="0mirify0s552psnfam5vc6w4nxwj73zyiasr6fmbsrg3bqp9dj6x"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; 1828 - scone = derive2 { name="scone"; version="1.16.1"; sha256="0zw8g4mql7b02xqwhc1i0bnhm20c1q9xqc7yz84j98pqbi996vi5"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; 1829 - scoreInvHap = derive2 { name="scoreInvHap"; version="1.14.0"; sha256="0j8cgjrslyylnk9l027ydskx8wl7f7xgnngk7g45j2iq3km5kxxi"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; 1830 - scp = derive2 { name="scp"; version="1.2.0"; sha256="14mc1l35vdzy6z3vnvm2mb598qh7p1izrns9mfkwa91zci4528rg"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1831 - scran = derive2 { name="scran"; version="1.20.1"; sha256="0ilzp6ngw9pq88gk79iic2zxfh5jaic6lnq3xfwc9a269bjylff0"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; 1832 - scruff = derive2 { name="scruff"; version="1.10.0"; sha256="0p60lzj51yp1p67b8y4xlqj9gh3z9sn53czdld4bvnqwzgwq5fnq"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; 1833 - scry = derive2 { name="scry"; version="1.4.0"; sha256="1lw5zqi8rygk3455ahilmcd75pidvjff45fryjbc9bkh935r3ish"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; 1834 - scuttle = derive2 { name="scuttle"; version="1.2.1"; sha256="015k879gg2r39lp6mz26jwmysa56k0ial6v74zzmbi8hnz9zic3i"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1835 - sechm = derive2 { name="sechm"; version="1.0.0"; sha256="1fs18d7w277cz7vabfg4p4jmz7hmz61idi22cn9x0qdb2qy7lqas"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; 1836 - segmentSeq = derive2 { name="segmentSeq"; version="2.26.0"; sha256="1fqv0k3hhrm3779sk0vzhmrz2r39zj5x8lzaiwfqamim0s4zvqgr"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; 1837 - selectKSigs = derive2 { name="selectKSigs"; version="1.4.0"; sha256="04g0hrcc0kqlkj3f31yd9fxq216r5jknvbfn1x2153s0v11i7ys9"; depends=[gtools HiLDA magrittr Rcpp]; }; 1838 - semisup = derive2 { name="semisup"; version="1.16.0"; sha256="19cvnbshk6qyxb001m2nrzlnc5v1n3lcpr79bka0lavmsi1wqa62"; depends=[VGAM]; }; 1839 - seq2pathway = derive2 { name="seq2pathway"; version="1.24.0"; sha256="1wa1aqczdjw03q77j923xwk32ljlqawnwl6z1vddmz731fk1ddpz"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; 1840 - seqCAT = derive2 { name="seqCAT"; version="1.14.1"; sha256="0jqam3msr64w1frmh5wgiqx1msnl1f3cj2ycs5ks1mszga89w3d3"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; 1841 - seqCNA = derive2 { name="seqCNA"; version="1.38.0"; sha256="07n21a6ini41yalhab049xi7ibx7nbp7pjyvpngqjjjnfy8z6l2k"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; 1842 - seqLogo = derive2 { name="seqLogo"; version="1.58.0"; sha256="1253sj1hc6bbrff0iv5xa3v9znqvisll0fy6fdjka9c778fn4mcp"; depends=[]; }; 1843 - seqPattern = derive2 { name="seqPattern"; version="1.24.0"; sha256="0h74z84zyvfzclsm0g13b95hirn99185wc6lp53jkzah9yyi59ay"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; 1844 - seqTools = derive2 { name="seqTools"; version="1.26.0"; sha256="08fy8df61xcig4365blnsddc0ywmdv9pmflvdb2ibnpp4480m8i6"; depends=[zlibbioc]; }; 1845 - seqbias = derive2 { name="seqbias"; version="1.40.0"; sha256="06w43plv4x1pafybq633n7adqp9yj3bvaaamq7vylmkfbcx3nl8k"; depends=[Biostrings GenomicRanges Rhtslib]; }; 1846 - seqcombo = derive2 { name="seqcombo"; version="1.14.1"; sha256="1cbp56nh5gz92napg82vh8gs3vlrj92xqggf5j6v30hw1hd7q7lp"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; 1847 - seqsetvis = derive2 { name="seqsetvis"; version="1.12.0"; sha256="1gviian0xykia1xh42w5r202nlm03hpkfgnc4yabalmv4zmwndh8"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; 1848 - sesame = derive2 { name="sesame"; version="1.10.5"; sha256="1y20lc9g31j9cqd11v2dd8lwx0476cgiwfzdka7y6qwlkqi9jwdw"; depends=[BiocParallel DNAcopy GenomicRanges ggplot2 illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; 1849 - sevenC = derive2 { name="sevenC"; version="1.12.0"; sha256="0gwvjf1zmkr6j9id1wm5f2abnrm9anby8xbcr17fbkchzas0kw03"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; 1850 - sevenbridges = derive2 { name="sevenbridges"; version="1.22.0"; sha256="1pa1hhfvnsdkgyv6qh7bg3fzbvcmccr7km877vgqhlpgfir10ig2"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; 1851 - shinyMethyl = derive2 { name="shinyMethyl"; version="1.28.0"; sha256="0b5i9anjz02k98zam29hixhrxbak0ghfbv00jj4041cbs42dkaja"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; 1852 - shinyepico = derive2 { name="shinyepico"; version="1.0.0"; sha256="0hdga4mqrdfhbcmhkmc1k45xhnwqnxnn14lhnz6zlbf4pawi1jb4"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; 1853 - sigFeature = derive2 { name="sigFeature"; version="1.10.0"; sha256="0v5g5lz1nl78dy1fgywn4gsb621xw0lb3phf8jvfj84m70g7wwns"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; 1854 - sigPathway = derive2 { name="sigPathway"; version="1.60.0"; sha256="1xz5nbw5dzyah8az7mpwj8m27fsvpi2jjhfg3n27dsv8rvdncqi8"; depends=[]; }; 1855 - siggenes = derive2 { name="siggenes"; version="1.66.0"; sha256="0lva0f255fcpy625frvij4n14q7nw4jcx8n2hlkxid4mgkfqwlhf"; depends=[Biobase multtest scrime]; }; 1856 - sights = derive2 { name="sights"; version="1.18.0"; sha256="0dzmikqfxypbhq5zax4yfr2m0bal79raq7ggrg8m2crqda6020i6"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; 1857 - signatureSearch = derive2 { name="signatureSearch"; version="1.6.3"; sha256="1c63a9l5rlvjn6v7cxk136kvng4rbmvlg5jdzz0zsi48vipwhm4f"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; 1858 - signeR = derive2 { name="signeR"; version="1.18.1"; sha256="18arsfdnmjqv9g70j2d1kw2k2dlk55sy7r0jq9hwf545q7sn5fwi"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; 1859 - sigsquared = derive2 { name="sigsquared"; version="1.24.0"; sha256="0awb5k9k459jnmb3rr08407w95r65ip50kgqffpdn9qqrjdimgva"; depends=[Biobase survival]; }; 1860 - similaRpeak = derive2 { name="similaRpeak"; version="1.24.0"; sha256="1hhzzidva3z9z1mj5j75mhgns8j7nhn0gnhjdpwmz25c0hc5n5l1"; depends=[R6]; }; 1861 - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.2.0"; sha256="0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh"; depends=[AnnotationDbi BiocGenerics circlize clue cluster ComplexHeatmap digest GetoptLong GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; 1862 - sincell = derive2 { name="sincell"; version="1.24.0"; sha256="140xcarald9pdfp45y84317wzx2cicq4sh3zyn3i563chhi2xqir"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; 1863 - singleCellTK = derive2 { name="singleCellTK"; version="2.2.0"; sha256="1qdf57mj0hx30zzci0hhvahhqcx2mbq3g7q4vc4mggsxxm0j0r4l"; depends=[AnnotationDbi ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly R_utils RColorBrewer reshape2 reticulate rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SummarizedExperiment sva TENxPBMCData tximport uwot withr yaml zinbwave]; }; 1864 - singscore = derive2 { name="singscore"; version="1.12.0"; sha256="16d452s6527xwxsfbfqxjnyn8ifx4lfqfrfkv516w1rs28qnpri3"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; 1865 - sitadela = derive2 { name="sitadela"; version="1.0.1"; sha256="0zslaw3yvavypc7lkwcz6nxcwhgp86f9gcjjv0hn43zhxwzbyal7"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; 1866 - sitePath = derive2 { name="sitePath"; version="1.8.4"; sha256="10syb7nrl83psy1lz06jpy96j1h4mgc8hrrhhikqcb4zqd7x14js"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; 1867 - sizepower = derive2 { name="sizepower"; version="1.62.0"; sha256="1025yfziv9znd278xz7cq8c17nhf5kwrf82nxx2s9pf0zhnh18sp"; depends=[]; }; 1868 - skewr = derive2 { name="skewr"; version="1.24.0"; sha256="194bhbv2y90wzqdb4axqq4qg6cihjbz3nvnkfpb82mbh8cai1l0f"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; 1869 - slalom = derive2 { name="slalom"; version="1.14.0"; sha256="12majjfp8bm4wyjfw9j1v9gxkwsinnk18bv941j6dz9srmby27ff"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; 1870 - slingshot = derive2 { name="slingshot"; version="2.0.0"; sha256="1aqsz2kxwax8d8d5iv3zk5hlyk5aya1wbxs1wky2rgccw4d35whx"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; 1871 - slinky = derive2 { name="slinky"; version="1.10.0"; sha256="17v1zdgvbpg1wv8l8v2magcvjq6968glh6d7v5zsda08z4v0np5z"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; 1872 - snapCGH = derive2 { name="snapCGH"; version="1.62.0"; sha256="1aih6k76rlpvgq9vxdnm6iln79v7hlrpvlrk5q2q4a1k2psp35zg"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; 1873 - snapcount = derive2 { name="snapcount"; version="1.4.0"; sha256="1367gw06fy937gjxbhbf8r0ff6k6aigxdx4s1xdh7qi602bfwvav"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; 1874 - snifter = derive2 { name="snifter"; version="1.2.0"; sha256="02mc4r9ajpascyqxgw8rc0x23c76b5b9caaxq4w3fi0s950jm3hz"; depends=[assertthat basilisk reticulate]; }; 1875 - snm = derive2 { name="snm"; version="1.40.0"; sha256="1a2y4k22lk3l60bm411b44kn8pj9ksyvi23vqxcb49idip4drj9x"; depends=[corpcor lme4]; }; 1876 - snpStats = derive2 { name="snpStats"; version="1.42.0"; sha256="11vvih5y9kvyjfp2navkfpp4xiyfgwlv4r0x3p52hkj92pc2pg3g"; depends=[BiocGenerics Matrix survival zlibbioc]; }; 1877 - soGGi = derive2 { name="soGGi"; version="1.24.1"; sha256="19m0krfx2v4ylhdq7rxrddy40rlmirqma7ynl6y2kmq0h8m8p26x"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1878 - sojourner = derive2 { name="sojourner"; version="1.6.0"; sha256="0h4nx0v69kxwlis8wm27d5ddvjyjw6kjb73hflmvzl16dy7d6dxr"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; 1879 - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.16.0"; sha256="1vwbma8qidydy88ryqjk936cznliqnkklrra5cvyfgsl4qhl7a8h"; depends=[MASS MCMCpack optparse tmvtnorm]; }; 1880 - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.4.2"; sha256="0b22kzg751zlkcbs8pi0bcqrsj3imsg35qfvxfrqb7gav7qznc8v"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; 1881 - sparsenetgls = derive2 { name="sparsenetgls"; version="1.10.0"; sha256="0kzkbpw6msxka34zixz8pi0vi2zigi3j9ff6cxg72j1fkxhv41az"; depends=[glmnet huge MASS Matrix]; }; 1882 - spatialHeatmap = derive2 { name="spatialHeatmap"; version="1.2.0"; sha256="0c0mhdyzaak9jjvanb8ghn2y1vm2g328hmm7xjl04vly1ka5h17i"; depends=[av BiocFileCache data_table DESeq2 dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph plotly rappdirs rols rsvg S4Vectors shiny shinydashboard SummarizedExperiment visNetwork WGCNA xml2 yaml]; }; 1883 - specL = derive2 { name="specL"; version="1.26.0"; sha256="1p1g91lpn1vkn3qvpd1vaj6mlngkybw9bvc4zdmha7qm41s12dkl"; depends=[DBI protViz RSQLite seqinr]; }; 1884 - spicyR = derive2 { name="spicyR"; version="1.4.0"; sha256="0gwa7amz3rw7p99rc4wpj79xmlcdr59x5ar0yg5jkxp8fpnwjanh"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors spatstat_core spatstat_geom tidyr]; }; 1885 - spikeLI = derive2 { name="spikeLI"; version="2.52.0"; sha256="0i2d4k6gng4h61k9l5s8myhi48p3svm54n8p177x9fyjh5d0wq5c"; depends=[]; }; 1886 - spkTools = derive2 { name="spkTools"; version="1.48.0"; sha256="0qpgjly7rq7dn762x5lggiyy553928kdyv5d5yf661hg5p6zr8k1"; depends=[Biobase gtools RColorBrewer]; }; 1887 - splatter = derive2 { name="splatter"; version="1.16.1"; sha256="1cps1l60qg1cirh453lkb69jdzhai6ap1maylrfs1izs5fz27wzi"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; 1888 - splineTimeR = derive2 { name="splineTimeR"; version="1.20.0"; sha256="1d4i7cjqy6m0lng6lkhjvmqad1jdan8wpv5c0igl0kg5659bc2hq"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; 1889 - splots = derive2 { name="splots"; version="1.58.0"; sha256="1lwpap41k27zl23212ncc4mpaf4vwaz419zkahgh8472sb9ypkaz"; depends=[RColorBrewer]; }; 1890 - spqn = derive2 { name="spqn"; version="1.4.0"; sha256="1cxclv0w5sa0p7dm03am70x9m03qvxy7x96x4flhd3511x4gvj0q"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; 1891 - srnadiff = derive2 { name="srnadiff"; version="1.12.2"; sha256="1g2lh459biabl0z7vacm5mnwmwcrb1ra5i3sgmpfkrmgzimc49ff"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1892 - ssPATHS = derive2 { name="ssPATHS"; version="1.6.0"; sha256="15x1ysbn2qv03wy6avmnnl3r38mq4372sxjr0zz4gb6fdh5h5bnn"; depends=[dml MESS ROCR SummarizedExperiment]; }; 1893 - sscore = derive2 { name="sscore"; version="1.64.0"; sha256="13bp1vzx93wra25cnb4ilvz7ckj1c1k3rh5wxsas6hq9lfkk2j0i"; depends=[affy affyio]; }; 1894 - sscu = derive2 { name="sscu"; version="2.22.0"; sha256="0v0kb6kpy75n57qklssjfmdp2mas5rpd4jhavvv00vqhhns13ay3"; depends=[BiocGenerics Biostrings seqinr]; }; 1895 - ssize = derive2 { name="ssize"; version="1.66.0"; sha256="1jzvmqx08yl78xhqr9sv93gd78as3s1nf26kvasswgxyl3szakdp"; depends=[gdata xtable]; }; 1896 - ssrch = derive2 { name="ssrch"; version="1.8.1"; sha256="046j8js3vdxl1gfn8g3d5mf6ixqffzniazwmn6kcdj2m4z6icpvg"; depends=[DT shiny]; }; 1897 - ssviz = derive2 { name="ssviz"; version="1.26.0"; sha256="17asjmqd0dv14jfrj0xj4nd5p6k2z0ky662xnngr1d05sykx8pdz"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; 1898 - staRank = derive2 { name="staRank"; version="1.34.0"; sha256="1y4vfwp6j9chk8ld2jcx8divhmlpp3f3ccpwzad3whrfn78px7cv"; depends=[cellHTS2]; }; 1899 - stageR = derive2 { name="stageR"; version="1.14.0"; sha256="1hlwhnf0vavrgbs4222w1avl8j3qasz5dkbjxfbicmr84g1fx823"; depends=[SummarizedExperiment]; }; 1900 - statTarget = derive2 { name="statTarget"; version="1.22.0"; sha256="0jaczdg8q9w36325h08z5plf6a4n6mkc8wj5hsfgj29pwqbj607v"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; 1901 - stepNorm = derive2 { name="stepNorm"; version="1.64.0"; sha256="01c3zv6ckayi1j3bppcc1dad8qdmkx7gf5awmrki3f8nq3zqznph"; depends=[marray MASS]; }; 1902 - strandCheckR = derive2 { name="strandCheckR"; version="1.10.0"; sha256="14nvpryrghcv0yvfhj035n9fymdjfpimjxcksxvk26f91yf0zlw7"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1903 - struct = derive2 { name="struct"; version="1.4.0"; sha256="09f68qbiyha2gc4lad9yv07r8fv5hyckqia6gjnzxs05x646rxjb"; depends=[knitr ontologyIndex S4Vectors SummarizedExperiment]; }; 1904 - structToolbox = derive2 { name="structToolbox"; version="1.4.3"; sha256="10aq9605xir4s1m1391909xzq9k41c35ddn34njyhnh26i3zql1x"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; 1905 - subSeq = derive2 { name="subSeq"; version="1.22.0"; sha256="0kdqlfzwjp1d8i4f1hxamc9k0m8hsnj587jxl6nwfar3vx0rvpid"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; 1906 - supersigs = derive2 { name="supersigs"; version="1.0.0"; sha256="12z42xsm6jpn31dbraj9k65f8yqmh2qcwsf7ppiqmn025g2h4li1"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; 1907 - supraHex = derive2 { name="supraHex"; version="1.30.0"; sha256="0xdfpwjwwmvi1vi7g9i6zkp7n08vagz2hzpkm487826hj4z3dn64"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; 1908 - survcomp = derive2 { name="survcomp"; version="1.42.0"; sha256="0d9pm3idqig9ksw4sfm4g9b8fwv24lhy8qqcqbqf0gav9ij39wzc"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; 1909 - survtype = derive2 { name="survtype"; version="1.8.0"; sha256="1yfkkcbnv09dgba1xll86fmjq9m4ryyyi8idsqgvd6qhf3pb9wbr"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; 1910 - sva = derive2 { name="sva"; version="3.40.0"; sha256="12jkcybdfspabh7x124d44l9fj1hwwg3gvcqxvz5wpkiflc2vkji"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; 1911 - swfdr = derive2 { name="swfdr"; version="1.18.0"; sha256="0mqc28s0kw87d93m8z9xkh81s8j6y18ggkdgx48iil5adw8rfs00"; depends=[]; }; 1912 - switchBox = derive2 { name="switchBox"; version="1.28.0"; sha256="10zriwb306rd9lnw8vxqgwx4cj40j8dv9z4dx7ba3b78rrhj67kz"; depends=[gplots pROC]; }; 1913 - switchde = derive2 { name="switchde"; version="1.18.0"; sha256="1rq2ccw1byz87g6425h1wfmzn4crl0jfn56d4ns7gxsw32jj4258"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; 1914 - synergyfinder = derive2 { name="synergyfinder"; version="3.0.14"; sha256="01n26iqrn4ngx8xkzml5ahzgg3c4s9q05c6gi4lm40x30d57gk1i"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; 1915 - synlet = derive2 { name="synlet"; version="1.22.0"; sha256="197j5dw8ginr7rhiv8fwcixm5bf9gbbjnzqkvgjm3wd8803fhx5k"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; 1916 - systemPipeR = derive2 { name="systemPipeR"; version="1.26.3"; sha256="01l35l5zj87qkarrbal9la6kshk3j7k8hy3iimv3gdnnz4axmvs7"; depends=[annotate assertthat batchtools Biostrings crayon DESeq2 DOT edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats IRanges limma magrittr pheatmap rjson Rsamtools rsvg S4Vectors ShortRead stringr SummarizedExperiment testthat VariantAnnotation yaml]; }; 1917 - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.2.0"; sha256="1s4ammnfs70x6apz1r83qaj9p9f5ppiv1z3n76jc71bd7gab1lym"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; 1918 - systemPipeTools = derive2 { name="systemPipeTools"; version="1.0.0"; sha256="1d7ykaq4c80dhfq3ljnjpl2f8c1a7yqd0mf5k4c2gdh4jfzypf0s"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; 1919 - tLOH = derive2 { name="tLOH"; version="1.0.0"; sha256="1vbdsnm5r8d9gwgk7klwmgg579q5m9vwh1r6x2027y76547wzzpl"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; 1920 - tRNA = derive2 { name="tRNA"; version="1.10.0"; sha256="0q3ngh4kjbwyaax4r6bagc7phkxvymvvmvps47xb99cjdgfsk47p"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; 1921 - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.10.0"; sha256="0lp110pa6rylyv771hfsrpj4cqsqdff67ky50x140j1kv4d41fkw"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; 1922 - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.12.0"; sha256="1d5mzngrajykj4ras3z307n72nf5zwqdz6jabx1k201l4vanrr6b"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; 1923 - tRanslatome = derive2 { name="tRanslatome"; version="1.30.0"; sha256="1l2s08nrd403hiiy080hd0946vkyjvl4z22ya8m2xipc13hrv59v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; 1924 - target = derive2 { name="target"; version="1.6.0"; sha256="132n4jfbhf50xkdfq2gs9fl30znkmhb0qq99fydywlhas2qw8n7n"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; 1925 - tenXplore = derive2 { name="tenXplore"; version="1.14.2"; sha256="0b1n3jnrrp4s6msvqiyv1a4fh1yvswh76z85hnh52rbr6ba65xbh"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; 1926 - ternarynet = derive2 { name="ternarynet"; version="1.36.0"; sha256="1fgbsvc5q9zmgdpcc4lyc1kq54sq39xc11mz29k4kl470r7ld5l2"; depends=[BiocParallel igraph]; }; 1927 - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.2.1"; sha256="1nin31l3p7xzbhxq8haq5l8zfg62j9hk2sgvmnffkd9sh76k7dia"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect]; }; 1928 - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.2.0"; sha256="1y5gcyn2kaq3xvvj5m1c6744lc12i86p60b5q3h7vvffp1lh3lvd"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; 1929 - tidybulk = derive2 { name="tidybulk"; version="1.4.0"; sha256="0r1nrpzjhnrkk7karcjja763yph8kwck2r1ksg8nqdmxhrpa5fwd"; depends=[dplyr lifecycle magrittr preprocessCore purrr readr rlang scales stringr SummarizedExperiment tibble tidyr]; }; 1930 - tigre = derive2 { name="tigre"; version="1.46.0"; sha256="01x7snnp2d9cl1322z5i4am96zc5pxj3b9d7l467cr0w27s199gf"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; 1931 - tilingArray = derive2 { name="tilingArray"; version="1.70.0"; sha256="11k1x2p44knvk6yvyf5macidxbnhb8m7j7s8axhdyiclpfii7wlr"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; 1932 - timeOmics = derive2 { name="timeOmics"; version="1.4.0"; sha256="1xhlwd6l15bc00jsg4c85ji9zgfch3400z0qfpl7as1ipr5j2kxy"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; 1933 - timecourse = derive2 { name="timecourse"; version="1.64.0"; sha256="1y2j23lalb9vyifm6dzd3pclpjyhcgmg34215nzyympqrhxi28mg"; depends=[Biobase limma marray MASS]; }; 1934 - timescape = derive2 { name="timescape"; version="1.16.0"; sha256="0m13d4fsxpifg2di3q6qg6c92f6mi6wh53qd8y29z8mk5rr6ijh8"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; 1935 - tkWidgets = derive2 { name="tkWidgets"; version="1.70.0"; sha256="0pm2bnksqy79smbp06d7vdnziacbfff8ddbn0hr0izxqm118pln9"; depends=[DynDoc widgetTools]; }; 1936 - tofsims = derive2 { name="tofsims"; version="1.20.0"; sha256="11widfrg4jrwcahjc0r0ydxjil12z0jjrky62iba4jv6w0q1sfbz"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; 1937 - tomoda = derive2 { name="tomoda"; version="1.2.0"; sha256="15d1rrhhj527cjgs3j7n16v7myiirhqg4q6mp02mn00s3ygphxhl"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; 1938 - topGO = derive2 { name="topGO"; version="2.44.0"; sha256="1ggi7yrhkyi85p3sfj3yd95n9mzq1xpff28ixa4dl9yzasks1v5a"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; 1939 - topconfects = derive2 { name="topconfects"; version="1.8.0"; sha256="1vzbqicsvfl7q8s2rn2qrda8xvwb8apxxw2xk29dg2h7kdlai93i"; depends=[assertthat ggplot2]; }; 1940 - topdownr = derive2 { name="topdownr"; version="1.14.0"; sha256="1bz1qd3f7sya09hw04spcmph6s6r7ibdzbm7r05z437ki5hflw6n"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; 1941 - trackViewer = derive2 { name="trackViewer"; version="1.28.1"; sha256="10mnsqp4ss8s4l67za19xxh9v87d1ncy9ylb972afsvfbj394y39"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; 1942 - tracktables = derive2 { name="tracktables"; version="1.26.0"; sha256="1fl3k63n2pr39vrf8npz1000zfr4y85k0lm8kbnjfq5n8bhnzanv"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; 1943 - tradeSeq = derive2 { name="tradeSeq"; version="1.6.0"; sha256="0fgmb309pvqf3chdhqgbd4lzhahcj5g71sica33nzn98qhipldx7"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr Matrix matrixStats mgcv monocle pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble viridis]; }; 1944 - transcriptR = derive2 { name="transcriptR"; version="1.20.0"; sha256="0xl88fk8i4pnbd7hw4v48awdgr5il1fgml0x7dqb00rgcmjbk5yr"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; 1945 - transcriptogramer = derive2 { name="transcriptogramer"; version="1.14.0"; sha256="18sks1p27qs7vfvs37vdaidj6r7pbwg5479lyv1pycvwgrz1sxwv"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; 1946 - transite = derive2 { name="transite"; version="1.10.0"; sha256="1x8qf28m2hqx0b968wdffy1gm1kffvv08hzm2yy2z7z0kxfj8mm0"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; 1947 - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.2.2"; sha256="19rpc3s0b1fmslr6jzfij61wipg49820hy63079ns7j0ldxj8zvp"; depends=[dplyr KEGGREST RCy3]; }; 1948 - traseR = derive2 { name="traseR"; version="1.22.0"; sha256="197gy5a8zb1mxjhjvpxlpgna9qq1cwlqhd0pjq69vbzjhvhrr643"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; 1949 - treeio = derive2 { name="treeio"; version="1.16.2"; sha256="1y60yvg1rl21cab9xrkns0209pg44mwr90qj099dvk97wsjkx67g"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; 1950 - treekoR = derive2 { name="treekoR"; version="1.0.0"; sha256="09b7mjf6zaq1gnm9yvd5178v1i137cxlp3bzqgzsll0ipgxrf1av"; depends=[ape data_table dplyr ggiraph ggplot2 ggtree hopach magrittr patchwork SingleCellExperiment tidyr]; }; 1951 - trena = derive2 { name="trena"; version="1.14.0"; sha256="1vyv1q48163darxq9xlnib75rh83996xgaj8pqnlrhhyh8qvwwki"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr xgboost]; }; 1952 - tricycle = derive2 { name="tricycle"; version="1.0.0"; sha256="19y2q39850nsqbhcqs0jf6mn67v7092vsyqrcxkmr8v0pniyrjz3"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; 1953 - trigger = derive2 { name="trigger"; version="1.38.0"; sha256="1ls3j9ws1g59app153asbkhlfy8a589xcpg62cbskqfi13pm5qzl"; depends=[corpcor qtl qvalue sva]; }; 1954 - trio = derive2 { name="trio"; version="3.30.0"; sha256="0irbbgfyg843asvfh320kbifjn8gpvkhabzwcw30gz40wqpnjn7p"; depends=[LogicReg siggenes survival]; }; 1955 - triplex = derive2 { name="triplex"; version="1.32.0"; sha256="088vd2g9cwyhqlpiw62wq2xip92dc2yy1aw64a6phkgqgpnmir6j"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; 1956 - tscR = derive2 { name="tscR"; version="1.4.0"; sha256="0bs1rkad0qb4fcpl6wpnik7yzxsh799859kqs4gpj9q63hgf4d27"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; 1957 - tspair = derive2 { name="tspair"; version="1.50.0"; sha256="1ml60sbcpsrksyl5ih58gf1a17jvl6xxbfwfh0fvxpfcidvlplp3"; depends=[Biobase]; }; 1958 - ttgsea = derive2 { name="ttgsea"; version="1.0.0"; sha256="08kgarbaf1dic2vydhr64dvqb6hsgfwshzqqsrp516rdcj55dvi5"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; 1959 - tweeDEseq = derive2 { name="tweeDEseq"; version="1.38.0"; sha256="15vlm7a1p950g4gimwqhij4m6ps2ni4236hvv2jw59ianzfp2fmh"; depends=[cqn edgeR limma MASS]; }; 1960 - twilight = derive2 { name="twilight"; version="1.68.0"; sha256="1x9xs9fn4y594mmpjhzzw8i3k46dx8pax087ijsi659q2xqjqsf2"; depends=[Biobase]; }; 1961 - twoddpcr = derive2 { name="twoddpcr"; version="1.16.0"; sha256="1kak3b6f7m5524ihca6hgcs9rbwxpn0dplafy5j5m16y0jnliwlx"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; 1962 - tximeta = derive2 { name="tximeta"; version="1.10.0"; sha256="0ipgpcl93cac4qff6lp9x2l3gav5kb1x1d56g32h09hlm797rvvh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; 1963 - tximport = derive2 { name="tximport"; version="1.20.0"; sha256="0ip2yr0zspf2aagskxl4dwncr48dw5qb90an3sswnnh2dqdb82if"; depends=[]; }; 1964 - uSORT = derive2 { name="uSORT"; version="1.18.0"; sha256="0pqdh8jk4frqbdxm5lh56zhsarbqvcjwafnjns95zv99gpyc5lyn"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; 1965 - uncoverappLib = derive2 { name="uncoverappLib"; version="1.2.0"; sha256="1c1djx0sqrcrd7hqk1j7mxg0zwfr5mg179qijm46hwyg6sl67m34"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1966 - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.28.0"; sha256="1clcz610sl3s0mjf84j21xgrmjhkxcc4h292ljwq5yzbkk68g896"; depends=[BiocGenerics HTqPCR]; }; 1967 - universalmotif = derive2 { name="universalmotif"; version="1.10.2"; sha256="0hv2v2zgif5ihr5hxmdz32rln43jc1j0rslp44kd3rijjl45zysn"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; 1968 - variancePartition = derive2 { name="variancePartition"; version="1.22.0"; sha256="1pqy2g9pg8pswmkrs2fzlkwwliw2r7f33h05bci5bz41b8ribpzj"; depends=[Biobase BiocParallel colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest progress reshape2 scales]; }; 1969 - vbmp = derive2 { name="vbmp"; version="1.60.0"; sha256="0mx8z20c6ngx9rx1xada77lnpj9fwy08izrsb47p3a358z1n06d5"; depends=[]; }; 1970 - velociraptor = derive2 { name="velociraptor"; version="1.2.0"; sha256="06wymf4nwv024cq9amqx0zgf6gr71cnfscqj9l1zw7zbc2kj4id7"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; 1971 - vidger = derive2 { name="vidger"; version="1.12.0"; sha256="1c09il55qrai6yhvkirisry4hxr9g7d1vj185xh0i8vzy0mk5xby"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; 1972 - viper = derive2 { name="viper"; version="1.26.0"; sha256="113g0zwz89rfnnvdl16s9iiim1n73v6aql6lzpwsk288779sz991"; depends=[Biobase e1071 KernSmooth mixtools]; }; 1973 - vissE = derive2 { name="vissE"; version="1.0.0"; sha256="02gsga6pr664qcnvg8dmq54kyhv6zbmdqa61cxn39jdkn6fs0bnr"; depends=[ggforce ggnewscale ggplot2 ggrepel ggwordcloud GSEABase igraph Matrix msigdb plyr RColorBrewer reshape2 scico textstem tm]; }; 1974 - vsn = derive2 { name="vsn"; version="3.60.0"; sha256="0nppph3kv8z83368snb8s3n4vcqj829yyi1kh4q09qvq18rhvssv"; depends=[affy Biobase ggplot2 lattice limma]; }; 1975 - vtpnet = derive2 { name="vtpnet"; version="0.32.0"; sha256="1hy47wiai1dw0f6pzz64kxqzn57wnxvsa3miiyvbnzfiw1a3ksmz"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; 1976 - vulcan = derive2 { name="vulcan"; version="1.14.0"; sha256="00yrnrvfqhamwcbcsqqg2zn1b6j30vcmc9dnqgi5ndf94lvfbnga"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; 1977 - waddR = derive2 { name="waddR"; version="1.6.1"; sha256="0011nrbc22ww42wnma6cnfif9frhgwxl4g1qz7nij1l1izg24v8c"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; 1978 - wateRmelon = derive2 { name="wateRmelon"; version="1.36.0"; sha256="1qar8z0nf33bqr488swig0bfq8lnvcdjcxvw3q3b0hkkvybn27zw"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; 1979 - wavClusteR = derive2 { name="wavClusteR"; version="2.26.0"; sha256="1sydzrqydfv1ik2h08xkxlx6xrv866bf0if6v5wch9l3krh0sych"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; 1980 - weaver = derive2 { name="weaver"; version="1.58.0"; sha256="0d7q1prq2zdxbj1ib1q8c42jsgylvbn3j025dl69w17971lbfdyg"; depends=[codetools digest]; }; 1981 - webbioc = derive2 { name="webbioc"; version="1.64.0"; sha256="1mpdw477j78s2nvlf2lzm6mdjcpamyyazjn060h9q3apawn6zajx"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; 1982 - weitrix = derive2 { name="weitrix"; version="1.4.0"; sha256="03ayy6bcmhyvmh9451iilpjbf0lwzbhw9y8lzd7rrq7129mbjgi9"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; 1983 - widgetTools = derive2 { name="widgetTools"; version="1.70.0"; sha256="186xgpgyfyi4angxhz6558lfpzvvszzlpyfr8xnbccs3gshk3db2"; depends=[]; }; 1984 - wiggleplotr = derive2 { name="wiggleplotr"; version="1.16.0"; sha256="13f3g6fcc29k0g21mhnypm3nc6qqjw867vamvfkdzynspsfb32ga"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; 1985 - wpm = derive2 { name="wpm"; version="1.2.1"; sha256="19x3wakx2h7h0hvlbm9yq2lw83lysmxjwq350bc0kvz62hii6i5r"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; 1986 - wppi = derive2 { name="wppi"; version="1.0.0"; sha256="0wbvkhhhy1ngj0sxvi12z1qk13dp3cbzaxc58kycmvmns9flffbf"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; 1987 - xcms = derive2 { name="xcms"; version="3.14.1"; sha256="1g8k90p0sbcb3rdrbldj5bcjp2piy5ldni4jplyr78vjpmrmvqk7"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; 1988 - xmapbridge = derive2 { name="xmapbridge"; version="1.50.0"; sha256="0bbhlm4c5v8d3qw579lw9qgyyq3p8kdd2kcrdlgv7q18gp5bkw7h"; depends=[]; }; 1989 - yamss = derive2 { name="yamss"; version="1.18.0"; sha256="1al615x778h17jqiyhiyf6djaq9iygs1hlbrna6y4xc0f2kvgxld"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; 1990 - yarn = derive2 { name="yarn"; version="1.18.0"; sha256="1x07l255x52z6cgdc2j8285shqszhr034xm5686rp6d35vah55ji"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; 1991 - zFPKM = derive2 { name="zFPKM"; version="1.14.0"; sha256="1k7xaxr2gn26y8bps5l32g2axfhdn07nbk4q3qcx32d5jm75qkx2"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; 1992 - zellkonverter = derive2 { name="zellkonverter"; version="1.2.1"; sha256="0b1wsxvixrv517crry07wmsqhx1sc6nfd7jk5z6svpydhwkg1jqr"; depends=[basilisk DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1993 - zinbwave = derive2 { name="zinbwave"; version="1.14.2"; sha256="1y8krazz2qdn0wn8ijjs2gn5dl5l960v6bijbkvh0r8066l7viky"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; 1994 - zlibbioc = derive2 { name="zlibbioc"; version="1.38.0"; sha256="1dv5bf12kzk1yzyfs3g5syim16sbi44kalvzj2i2xcnxnl6x60ip"; depends=[]; }; 589 + MVCClass = derive2 { name="MVCClass"; version="1.68.0"; sha256="088gzh33vjkjf78xczqfs89pyg0k7c3533yfvijqxl84ni2ky78z"; depends=[]; }; 590 + MWASTools = derive2 { name="MWASTools"; version="1.18.0"; sha256="0i8880nb6y7sanb9w8cwvd69990p1zmfyi3d98259hl2ly65zywj"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; 591 + Maaslin2 = derive2 { name="Maaslin2"; version="1.8.0"; sha256="08zncj3ywc5pcywi3zgqvvlmqgp9j165b3vrkipvwv15b647jqvp"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; 592 + MantelCorr = derive2 { name="MantelCorr"; version="1.64.0"; sha256="10n1f04088wzki7mw27zwlahv6mmkwjjljkj0g65az5arki02rbl"; depends=[]; }; 593 + MassArray = derive2 { name="MassArray"; version="1.46.0"; sha256="1m3a0h5jmjifm16z9l37rij00jka0k22qryq0lmhvfmidzvn7pbf"; depends=[]; }; 594 + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.0"; sha256="1icqyxkx5a9y3wahkxpxngw85c7l4hih1ym9nwwn9qy93pnw1zi4"; depends=[waveslim]; }; 595 + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.6.0"; sha256="1s75p8rrmj24r0vcbaiyw8xg8y84j388mv6iawai7pypfcl8s1z3"; depends=[matrixStats]; }; 596 + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.0"; sha256="0isahwrq232fkls7bsjlnsfi2q1yimfx61k7as8in82a5jf56rs1"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; 597 + MatrixRider = derive2 { name="MatrixRider"; version="1.26.0"; sha256="0mv0w3m7waqfm8gy39hmdn00p6cq0a0ndr01scfg1js29jm6sgc2"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; 598 + MeSHDbi = derive2 { name="MeSHDbi"; version="1.30.0"; sha256="0m4vak1sqh28dz4s2i3nhvhpns024kqnapqa6ibqq0spac8fvknr"; depends=[AnnotationDbi Biobase RSQLite]; }; 599 + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.66.0"; sha256="119d7wz374vshg89p72qbnnxwdk32h4rhz8ay505vnnqkyyiw5ag"; depends=[]; }; 600 + Melissa = derive2 { name="Melissa"; version="1.10.0"; sha256="0ybhmf1kpj77z76izfbc4ipjphrdqdba5kpym6fxq08lcj96j4k7"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; 601 + Mergeomics = derive2 { name="Mergeomics"; version="1.22.0"; sha256="0sjpx6iffrc8yb702xlyxy6bahw2f3dpp8l9vzgm2rl9jll2raxk"; depends=[]; }; 602 + MesKit = derive2 { name="MesKit"; version="1.4.0"; sha256="1bz5krwx8v63s9mzbxivkj88vp0f1i3xk4mplkhra8wrn5kc7qvf"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; 603 + MetCirc = derive2 { name="MetCirc"; version="1.24.0"; sha256="0wgf6l6ficl4456sa56ccjgj4z9iwp94ar2dhqjyjqz5fxdz4cvk"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; 604 + MetID = derive2 { name="MetID"; version="1.12.0"; sha256="08n0b76vzv5zlcw0icc2155wbyik2r7x43gf7rxj929l9yx213py"; depends=[ChemmineR devtools igraph Matrix stringr]; }; 605 + MetNet = derive2 { name="MetNet"; version="1.12.0"; sha256="1h8n595qz0wjg4mx4wccmxz7j9wlkqzbg8c2a30gkhlwknc3k8qh"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 mpmi parmigene ppcor psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; 606 + MetaCyto = derive2 { name="MetaCyto"; version="1.16.0"; sha256="0rhxnj7s01mvfg6bnrx86qm88dihzcivz66z0l52qvc13q38zxv7"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; 607 + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.14.0"; sha256="16j9xx7hka13shih9cb3l49vd06ay83pg434lxz0pkdl3zlfhkak"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; 608 + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.8.0"; sha256="178wva1km2j53yr3j49pzahsixqlcln750l433vzl111p7db1xc6"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; 609 + Metab = derive2 { name="Metab"; version="1.28.0"; sha256="1syd548djqcmx8d094mzgj4mw9zzfq2sn9fqxm4z2kpgzqnmy400"; depends=[pander svDialogs xcms]; }; 610 + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.2.0"; sha256="1srmpyccpdqxxlwq68d03yddb74a3kb6yw6yb6v92mpfal1qgdss"; depends=[MsCoreUtils stringr]; }; 611 + MetaboSignal = derive2 { name="MetaboSignal"; version="1.24.0"; sha256="1rn6i6masadz5y2lrhjfw2rkfri25rnfnx0gxg9pqsg523bz2plb"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; 612 + MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; 613 + MethPed = derive2 { name="MethPed"; version="1.22.0"; sha256="1a48yhnaw0lxb9cj0ywd59j7yf109bii0qq7d8v9rl9l1l4apmy8"; depends=[Biobase randomForest]; }; 614 + MethReg = derive2 { name="MethReg"; version="1.4.0"; sha256="1axqcza16r7wqnd78bdzh2sv5yi00ikymawkq0y2spcafb85facr"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; 615 + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.26.0"; sha256="1n5gsizg9cfq2mi2v7f81ika423ci7vdgddnlxj5x8vszn5jfavk"; depends=[Biostrings gplots seqinr stringr]; }; 616 + MethylAid = derive2 { name="MethylAid"; version="1.28.0"; sha256="014v732rlqw474bxvgzhw2zcjliry4587lnns12zv8qj8lp780wx"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; 617 + MethylMix = derive2 { name="MethylMix"; version="2.24.0"; sha256="0dwkw0bjaviyf7xshimckcsgx4zdxydl7l0x5skgbgrrc42xb9g3"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; 618 + MethylSeekR = derive2 { name="MethylSeekR"; version="1.34.0"; sha256="0wh4rfw80f9ig8j3ng0b0i297wzrpb4ka1cw0nm8klsqrh0kz3ng"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; 619 + Mfuzz = derive2 { name="Mfuzz"; version="2.54.0"; sha256="0pk632xqacahxf57q9zafdci9qarfq94swlwzdzhav211ln4c5gh"; depends=[Biobase e1071 tkWidgets]; }; 620 + MiChip = derive2 { name="MiChip"; version="1.48.0"; sha256="13j58iz7fjj41833yd8dcks061zknxdy2ky0ka0i56japng0w1l2"; depends=[Biobase]; }; 621 + MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; 622 + MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; 623 + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; 624 + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.0"; sha256="1wzr98fzrby12v6843f7l1dc0xcsbg9f1lkdg85qkv9j4c6aji52"; depends=[ape Biostrings coin dplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree magrittr MASS patchwork rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; 625 + MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; 626 + MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; 627 + ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; 628 + Modstrings = derive2 { name="Modstrings"; version="1.10.0"; sha256="0lnfvv8k0ffpf72zvhxy6831mgr4gajd4miad8rjzaajhqndr2yf"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; 629 + MoonlightR = derive2 { name="MoonlightR"; version="1.19.0"; sha256="1bfp6cx4nmb821ww9bxxg2cfh87blwddrdjixpgb4aqzwizmhzhv"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; 630 + MotifDb = derive2 { name="MotifDb"; version="1.36.0"; sha256="0a2zg26zzk7bj5c33mbwl8dx9lh1hns8q8kwp09rbfjdichv7425"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; 631 + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.2.0"; sha256="10dgck0rwzfxzlbdf8fclrci6858iqbl9g690fva4zsjllzykbl5"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; 632 + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.2.0"; sha256="0p7lmiijxgms01qsrgih9r8y5q355w67nqmpj5l70c0b52cv3ri9"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; 633 + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.0.0"; sha256="0gg71a5y6m46xnm45cmkjqbss4c416v8k8s21yp3qids7zc36izi"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; 634 + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.6.0"; sha256="1w8d1v2r3plwwcz23zhbpvklhapf2a6x3xmglyh4sh6sy9ynkgrv"; depends=[clue MASS Rcpp S4Vectors]; }; 635 + MsFeatures = derive2 { name="MsFeatures"; version="1.2.0"; sha256="020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; 636 + Mulcom = derive2 { name="Mulcom"; version="1.44.0"; sha256="0s03qi0288fzzby5iyzgy4rarrxfxcyp6434755268vzz2s6pyj5"; depends=[Biobase fields]; }; 637 + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.20.0"; sha256="1h3b8vqlbd04amjprxd1814zksdrbi01a0xn3906vkbqi43hfyn9"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; 638 + MultiBaC = derive2 { name="MultiBaC"; version="1.4.0"; sha256="0pwg6zmrfqrzra1r6ai68ya5fjf6dy2sl035xnxl617iii96jada"; depends=[ggplot2 Matrix MultiAssayExperiment plotrix ropls]; }; 639 + MultiDataSet = derive2 { name="MultiDataSet"; version="1.22.0"; sha256="17asldnxqvp3sijx7nbi2lbbgnq4iq8z72qlg9080sm5lga1yy1s"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; 640 + MultiMed = derive2 { name="MultiMed"; version="2.16.0"; sha256="1dkvvrvjfc04ad48zywbrmbvm1lcnni6rvvl9gdax11y9lz19341"; depends=[]; }; 641 + MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.0"; sha256="06n1nxk2hz9gx6wwz0wljxjhyjz3j4njjdwy0vx7zai7rzdv0211"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; 642 + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.0"; sha256="1n9rakj57yf17hay1bzvwc2h761yijmlflb3crg1bzwvmn32yhsl"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; 643 + NADfinder = derive2 { name="NADfinder"; version="1.18.0"; sha256="0glcjxgydj2k7h4963fl465y398xqvq4g393ainvwcgz77kx4sk0"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; 644 + NBAMSeq = derive2 { name="NBAMSeq"; version="1.10.0"; sha256="1him4qg3xmgisl3jsws690ciknvj2876xn8n9gxc8l08cihfminf"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; 645 + NBSplice = derive2 { name="NBSplice"; version="1.12.0"; sha256="12i5zqzxqzh4rfqh02mf2lr9k7xsz1hb945lcng0fc01l7dawd0a"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; 646 + NCIgraph = derive2 { name="NCIgraph"; version="1.42.0"; sha256="1jw6v4gbx7zajiqm8hqbh1w14xhn5pvila5mkf3flfmsffqbk158"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; 647 + NOISeq = derive2 { name="NOISeq"; version="2.38.0"; sha256="0mmvzf8y4gm84hgjdpf86b1y37237wp5mc3x1g6sdiz9qi8l356v"; depends=[Biobase Matrix]; }; 648 + NPARC = derive2 { name="NPARC"; version="1.6.0"; sha256="16zf0kk3y1liqi1hxwrnkdvdp1dva87k1icyvy54n64ny5hhpriv"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; 649 + NTW = derive2 { name="NTW"; version="1.44.0"; sha256="1mmd5yvmmm094avpjdnf47qax4nrb4y6yy25qy8m6qasf6lwplx3"; depends=[mvtnorm]; }; 650 + NanoMethViz = derive2 { name="NanoMethViz"; version="2.0.0"; sha256="1r2aqb4ky1wkzqkm2634qgvl6m9cig59fcqb90sd442n01dw8gi3"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggthemes glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; 651 + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.24.0"; sha256="0vnlxyjn6fkr4gy8qczxq9q9bnfjxc2ikq2yykbpkyb0bpjl3q2q"; depends=[Biobase matrixStats Rcpp]; }; 652 + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.2.0"; sha256="01ghc28ly1dyjqb6xgipgvmr5nlavml8ibrsfpgihd8w8zz7s1ll"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; 653 + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.26.0"; sha256="0nkj0va3gzc5rskm3lm801a7hip2gjpchx8g3652xs7w5jq82z5f"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; 654 + NanoTube = derive2 { name="NanoTube"; version="1.0.0"; sha256="0wymz5y78kgf1i6ln27hnkin4v617q5zg5ljxa205q8b4qxnghxg"; depends=[Biobase fgsea ggplot2 limma reshape]; }; 655 + Nebulosa = derive2 { name="Nebulosa"; version="1.4.0"; sha256="17ds14l5pn0896az17sswr4vfz335k251ph7l9iaqfi4asjddv6w"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; 656 + NeighborNet = derive2 { name="NeighborNet"; version="1.12.0"; sha256="0j9sl99y6ardaypiakc5irc2lzb8ykv3w8hxkyw3rgspwsqkf80k"; depends=[graph]; }; 657 + NetPathMiner = derive2 { name="NetPathMiner"; version="1.30.0"; sha256="0c0fpwlrvrwgvi8qp4i7xlr75crpb83zm16fhcbx05bi9djhn6ws"; depends=[igraph]; }; 658 + NetSAM = derive2 { name="NetSAM"; version="1.34.0"; sha256="1aw8qfc509m165wi3r60nfc082hrfqxsm0a4gkr072d0j6aymz9v"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; 659 + NeuCA = derive2 { name="NeuCA"; version="1.0.0"; sha256="0nxhs5ash0z73q123d28j65n9f4w6502nk0l5frswpfibr2iyl94"; depends=[e1071 keras limma SingleCellExperiment]; }; 660 + NewWave = derive2 { name="NewWave"; version="1.4.0"; sha256="03446a0k4fpqqp0kjzvf9q5x4aykmr086jnrkqwl542wyq6irsy5"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; 661 + NoRCE = derive2 { name="NoRCE"; version="1.6.0"; sha256="0p8w1bkqqgffbmj9j6cwbcw02d5nlqr4g6lpvhny0y7adbc8zcab"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; 662 + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.12.0"; sha256="0r8piir3h6yh183r2j7vpv4glhpfirc49ssrg8bpf9w3m042k99i"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; 663 + NormqPCR = derive2 { name="NormqPCR"; version="1.40.0"; sha256="08qq4ff56f77mv5b02190df1jpx4k70hwhpvqdvlkcxmv5l1a337"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; 664 + NuPoP = derive2 { name="NuPoP"; version="2.2.0"; sha256="1rsr3b07q78pa9kd3p3b1s9fx30xxan74r1mkb4nx4f8bxg0r3ag"; depends=[]; }; 665 + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.0.0"; sha256="0v91bx18kknfby5f9xxvn3266cn1gv4nrgqv55bmq3bn1vlqf58q"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; 666 + OCplus = derive2 { name="OCplus"; version="1.68.0"; sha256="0d21viy7dg870i3xvjq2c7w2djw9riz96fs6lnccg6nqv4gbyinl"; depends=[akima multtest]; }; 667 + ODER = derive2 { name="ODER"; version="1.0.0"; sha256="02wc8h1nadwz11yvmb79ib9v4dpzvb6jsgjbv8ppw82jf18imq9s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; 668 + OLIN = derive2 { name="OLIN"; version="1.72.0"; sha256="0wr423340z9ckc29alwwgbjbw23clhxyc3kgx5hk0hhxlv6pq9gb"; depends=[limma locfit marray]; }; 669 + OLINgui = derive2 { name="OLINgui"; version="1.68.0"; sha256="0db9c9d5c71xzy3gdpwgxwk9pm0xibm1740zhcpypx4x2rg0lr1i"; depends=[marray OLIN tkWidgets widgetTools]; }; 670 + OMICsPCA = derive2 { name="OMICsPCA"; version="1.12.0"; sha256="0d5hplm94k7hz6lap31jsb5pdh8lb7xl9i0swznm5vzrxrjdifyd"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; 671 + OPWeight = derive2 { name="OPWeight"; version="1.16.0"; sha256="1zkbhb70aam3g1arfb8bc8z4c4bd1qyr1zidz6srx1n25pkhp4ii"; depends=[MASS qvalue tibble]; }; 672 + ORFhunteR = derive2 { name="ORFhunteR"; version="1.2.0"; sha256="0jkpq3hiv6n5c4hy3khs59020p98ig91w78ab37jam3sibykr0c6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; 673 + ORFik = derive2 { name="ORFik"; version="1.13.14"; sha256="0m7hf3a7bwz5yawl364c68g31q0syi03vlga0hhgy2hm9f3g0ips"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; 674 + OSAT = derive2 { name="OSAT"; version="1.42.0"; sha256="1ibhrrlfjjils0w6n586s5ws0ybv7ija2p2f0jq3m3m9l324iyx9"; depends=[]; }; 675 + OTUbase = derive2 { name="OTUbase"; version="1.44.0"; sha256="18wmllkc3h8x9ihrg0lzk4jvxjwrccl1jr37inkdmzv4aq5b7ygs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; 676 + OUTRIDER = derive2 { name="OUTRIDER"; version="1.12.0"; sha256="0ygsk0q1n8h02y4x3ccajkyyryn8gq0dz397l3jryb248g564a4h"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; 677 + OVESEG = derive2 { name="OVESEG"; version="1.10.0"; sha256="016056f4qjnlz2s3z2vbqxicxwghzrlsfn2bpf741qz9ckv37s27"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; 678 + OmaDB = derive2 { name="OmaDB"; version="2.10.0"; sha256="0qx0pf50k38pxz5lfhj66bjc6qy12d8nch2pvvcp209gxkqhjq0g"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; 679 + OmicCircos = derive2 { name="OmicCircos"; version="1.32.0"; sha256="1lkncbdq93azp1gv0z4bwdi6l1gpywm096hhn45q7w6f0dy5ydqs"; depends=[GenomicRanges]; }; 680 + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.10.0"; sha256="1vdnpsbpm4zyc17nah5qnlw66bihc7svqvbwgbxmyfp84c2vbxjy"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; 681 + Omixer = derive2 { name="Omixer"; version="1.4.0"; sha256="1pdsxcih642csqga7wy93bbhib2v08pywa8aw67zy7p62hvrxwim"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; 682 + OmnipathR = derive2 { name="OmnipathR"; version="3.2.0"; sha256="1q89mxnp8cig9r1499g7fb9p9x9ryz1dmc3w6ps5ww9n6rl8jqk8"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; 683 + OncoScore = derive2 { name="OncoScore"; version="1.22.0"; sha256="0pva48qjbxibgk2wxpaxr4xfq9i8dxbml418wx2nrjj20dn2dhcv"; depends=[biomaRt]; }; 684 + OncoSimulR = derive2 { name="OncoSimulR"; version="3.2.0"; sha256="0dcx1qg42pxlcdpl07f53zkk32qpa8hd7fzdz5acvq3zm8yjmhlk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; 685 + OpenStats = derive2 { name="OpenStats"; version="1.6.0"; sha256="17gvfvii7z8w9l6w5p0i05374d6sw704w627fnasbrcmkfqnvwka"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; 686 + OrderedList = derive2 { name="OrderedList"; version="1.66.0"; sha256="14js4l8airvya3yzrlkk5wz68nr454237bppfpv6b0kjyink8cli"; depends=[Biobase twilight]; }; 687 + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.22.1"; sha256="01fdwcvi854jdxhj07l6cbnc0f7gnh1pwl7kpjdahbqg6mmfhd0g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; 688 + OrganismDbi = derive2 { name="OrganismDbi"; version="1.36.0"; sha256="0zp6x2iqhn9s3xp07yilnr6hn73acvkdai5xip4iiwjdlnfffj83"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; 689 + Oscope = derive2 { name="Oscope"; version="1.24.0"; sha256="10aw7f3flvn3nvnzbrya2655c3g56md37ry4q2zl8hyrv5h3p0v2"; depends=[BiocParallel cluster EBSeq testthat]; }; 690 + PAA = derive2 { name="PAA"; version="1.28.0"; sha256="1hpgskzzbn4rq4dh29nzv68kz40l2mj8mfbxpgbb3icd143jwiyf"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; 691 + PADOG = derive2 { name="PADOG"; version="1.36.0"; sha256="1ya2wky2md4i8dh0zhnsmz53wjxk2l4633a6vsi0z5jkz2p8c3ym"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; 692 + PAIRADISE = derive2 { name="PAIRADISE"; version="1.10.0"; sha256="1xsgmi3ddjwg403mrjpq5c23zy879aqrcxmlh48a89zsdic921di"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; 693 + PANR = derive2 { name="PANR"; version="1.40.0"; sha256="108axql2iwgbjl7m41ydi8v7b76dg6xf9c0wfz1fjxwdnngd575q"; depends=[igraph MASS pvclust RedeR]; }; 694 + PAST = derive2 { name="PAST"; version="1.10.0"; sha256="1mvv0jggvhlacx6lqag71ypi2vqbgghg1xdi82s54626ry66vj0d"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; 695 + PCAN = derive2 { name="PCAN"; version="1.22.0"; sha256="0fh5pghvh93pyq5k717qjzi527687pb32glvj51fzx9ykwcxl488"; depends=[BiocParallel]; }; 696 + PCAtools = derive2 { name="PCAtools"; version="2.6.0"; sha256="10kfhsxhsjpzal3yvcqg769h5fz99cqqjq217cj9jip3jfh2m2h4"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; 697 + PDATK = derive2 { name="PDATK"; version="1.2.0"; sha256="0nwz3fn6ykdpa8qmkiq2acv2imckk2ml8ayma2mcbjhrd9ff7m7f"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; 698 + PECA = derive2 { name="PECA"; version="1.30.0"; sha256="19g1qcqvpkli0jvhl2k4h9cwvlzh15spyhkqwv0h8fai45jnm7xy"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; 699 + PERFect = derive2 { name="PERFect"; version="1.8.0"; sha256="1daayhrvh0lk6drmnmmanry8wb8p3rkhh00zymzgncl7n6bv3dql"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; 700 + PFP = derive2 { name="PFP"; version="1.2.0"; sha256="1h80wn6jzib6nxrvva7zba5sw8yd2fv6ncm8zmp019inajjcgn1i"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; 701 + PICS = derive2 { name="PICS"; version="2.38.0"; sha256="16i782zz0j2djypdm8zqlag6wfac9xiq232kbhci061604npv1ih"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; 702 + PING = derive2 { name="PING"; version="2.38.0"; sha256="0nd5l1s211qyyrws4k5z45v483cxi6i1fazkx98bhnvfp5fb4mz1"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; 703 + PLPE = derive2 { name="PLPE"; version="1.54.0"; sha256="1njzm736b6lvh34hh58zbdm1ixgwmjk58dr916sda5d15bbpgqrf"; depends=[Biobase LPE MASS]; }; 704 + POMA = derive2 { name="POMA"; version="1.4.0"; sha256="11ihqijqys6yd2ns99892dyi677v1d5vv10w99n0ka1821i9jcsb"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; 705 + POWSC = derive2 { name="POWSC"; version="1.2.0"; sha256="159m2ds42dnvx9f2w2g9y4avjwq6n2fm4fq7v6rbyynf8hp4hwnw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; 706 + PPInfer = derive2 { name="PPInfer"; version="1.20.0"; sha256="06saafcy5n9h9dg95q64i1cv7hpbpv7r13fj9y8pyc6gqy6bicq4"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; 707 + PREDA = derive2 { name="PREDA"; version="1.40.0"; sha256="0435857cg30410w1iqpqd15nwn9x43axw0n2w6pv2jwcxdn58gjj"; depends=[annotate Biobase lokern multtest]; }; 708 + PROMISE = derive2 { name="PROMISE"; version="1.46.0"; sha256="1pajvwr89jh7nn2myv5y24xk2k1vl6zs52lrla70v25xxhpmwwkk"; depends=[Biobase GSEABase]; }; 709 + PROPER = derive2 { name="PROPER"; version="1.26.0"; sha256="19rn1vad18sfdwgnyh9fv5hh70h4pvsy32rac393hd39wqqhmsl0"; depends=[edgeR]; }; 710 + PROPS = derive2 { name="PROPS"; version="1.16.0"; sha256="19m02qcgnq8kgi17l1v70k5kpdy696dsv9gvr60w4z1dgk1ghw4s"; depends=[Biobase bnlearn reshape2 sva]; }; 711 + PROcess = derive2 { name="PROcess"; version="1.70.0"; sha256="116x99z4nq895x9np6mhm6rrc3agg2ni6rim6aargda7c6i5v8rm"; depends=[Icens]; }; 712 + PSEA = derive2 { name="PSEA"; version="1.28.0"; sha256="14whd775m4pvf0mggrdw0jyz5wrhqdyj647qvrnkjnvnfkhivh1a"; depends=[Biobase MASS]; }; 713 + PSICQUIC = derive2 { name="PSICQUIC"; version="1.32.0"; sha256="0zqz9jyca75ahmkds61cl03i68n3v25n7nmfwc9niv23ikp18pj4"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; 714 + PWMEnrich = derive2 { name="PWMEnrich"; version="4.30.0"; sha256="16nphxfmfrxpf6w4xccpr132a7jz34nhjv0rg58n6n7kfsf9h4k7"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; 715 + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; 716 + Path2PPI = derive2 { name="Path2PPI"; version="1.24.0"; sha256="07a0z9islqnla01pmqni4a3l90iq1c4bwhycnarmdhhrcq4ms2v9"; depends=[igraph]; }; 717 + PathNet = derive2 { name="PathNet"; version="1.34.0"; sha256="1syd5k54jj74f39z871a9xc5snslmsv6h9f0lacpf8chcpbs47hy"; depends=[]; }; 718 + PathoStat = derive2 { name="PathoStat"; version="1.20.0"; sha256="0vaidkwnny60m0qpkraz6cnzmwm344niwk325dyqyc348r99bk1s"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; 719 + PeacoQC = derive2 { name="PeacoQC"; version="1.4.0"; sha256="1szxqn2rz9qnc9k88gzmvndiwlch8b4ahxspnyf21xhrkvdqys1j"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; 720 + PepsNMR = derive2 { name="PepsNMR"; version="1.12.0"; sha256="05m1bjk6xpm4k05g4ww7zhhv93l56k8qq78lirqi9gsnj05a9898"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; 721 + PhIPData = derive2 { name="PhIPData"; version="1.2.0"; sha256="1jlbwlj47raymg1njgg7wfl81apc5dn0x2plrrhyi1rrdrjdzgpp"; depends=[BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; 722 + PharmacoGx = derive2 { name="PharmacoGx"; version="2.6.0"; sha256="1rglk12ng959sqkfgv8q7sv0mkdsvwkn8dgb0pv4xi0kcl03frgs"; depends=[Biobase BiocGenerics BiocParallel caTools checkmate CoreGx data_table downloader ggplot2 glue jsonlite magicaxis MultiAssayExperiment RColorBrewer reshape2 S4Vectors SummarizedExperiment]; }; 723 + PhenStat = derive2 { name="PhenStat"; version="2.30.0"; sha256="0b423kkbyyjk4ns4pdwh1lag2k0v7wn17h4l4aca3zkjrsf5522n"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; 724 + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.2.0"; sha256="1x5fbipgsiz2ipg9yh2r8wr8w1s6q01vq4149gjjxgx779xz250n"; depends=[doParallel dplyr foreach igraph Matrix]; }; 725 + PhosR = derive2 { name="PhosR"; version="1.4.0"; sha256="0ssfvc9qqj25j48srjjissq034f7giddx45w236yssaynw3ykslr"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; 726 + PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.0"; sha256="0j9i0h8dvqjhpx08rwjbrmfibvmzvf2wlj31db1radf7hbj10wxr"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyjs xml2 yaml zoo]; }; 727 + Pi = derive2 { name="Pi"; version="2.6.0"; sha256="14bpqzwx59shx5467nj0g6wj58qh9zqhy1i9l1n1gk7wd52ig5ql"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; 728 + Pigengene = derive2 { name="Pigengene"; version="1.20.0"; sha256="1rdz2d5fy6gpdvzv5vfgxngwkag062i6bvvjqkyflabn0yijjpmi"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; 729 + PloGO2 = derive2 { name="PloGO2"; version="1.6.0"; sha256="0i5b7nfifjx1ywvdq4mhvy3wzdg8cqdcc7sw1awsz9xfnrjnhcdp"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; 730 + PoDCall = derive2 { name="PoDCall"; version="1.2.0"; sha256="0hwhnk5iyyz5fddms237j6iaim97nw1z1qxbsic9l7z2bv1qz8g1"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; 731 + PoTRA = derive2 { name="PoTRA"; version="1.10.0"; sha256="0qqr9mjqhfk76pnpzd0hzxw180swqr9b1dhakj65lha5mha4vgid"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; 732 + PrInCE = derive2 { name="PrInCE"; version="1.10.0"; sha256="09fvk96zxj0bglbs8kgnbg3xxri2pial14g4kcsynaac0m2lmdyk"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; 733 + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.10.0"; sha256="1zr1jpbnjjrgrbm99n8182akp7xg75bf54gy0wc66r7dxj4vivfl"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; 734 + Prostar = derive2 { name="Prostar"; version="1.26.0"; sha256="054ify5nv3cr1zy1ijnbvvnc9nwam5vqmfyl784pckf9igywb8gb"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; 735 + ProtGenerics = derive2 { name="ProtGenerics"; version="1.26.0"; sha256="0x53pk7h47gjza1q5pz7jb1qqhwa9z2rr5fr61qc92zl3mqk57m0"; depends=[]; }; 736 + ProteoDisco = derive2 { name="ProteoDisco"; version="1.0.0"; sha256="14rizjlwf87qhi929b4vafjzvx7p112bsq0zb2wppxh3m7izs4zp"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; 737 + ProteoMM = derive2 { name="ProteoMM"; version="1.12.0"; sha256="1y7w6rs11kclh5nipnrh02ny12bgf2rkb2dghqcybl80s6r8m6bm"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; 738 + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; 739 + PubScore = derive2 { name="PubScore"; version="1.6.0"; sha256="0b68pzz9iav2d18w6prpp4h6623mfm4qkp36mmr7jqd1ghgj4nc7"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; 740 + PureCN = derive2 { name="PureCN"; version="2.0.1"; sha256="0527sfywa692pvj1kh6xvciryivmvyx1czq502rj3qi3abdqzwl8"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; 741 + Pviz = derive2 { name="Pviz"; version="1.28.0"; sha256="0n5bgnhngb38fgrjbibjs7wvmrglrlsr62c27y7k7rqckyrpv21l"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; 742 + QDNAseq = derive2 { name="QDNAseq"; version="1.30.0"; sha256="1sza9br8agpdz1k9fn5wisir44sj8v0rk4wbx35d2c2kp9q70pqj"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; 743 + QFeatures = derive2 { name="QFeatures"; version="1.4.0"; sha256="1rvdfs50hi4a6i9iah916c0yxl31yljs4k62mr839bi162zg4pj1"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; 744 + QSutils = derive2 { name="QSutils"; version="1.12.0"; sha256="1qcxarsk9625xsms0fpmlkrpzfbj4rnd8m03k6h1n08imj6x8z4d"; depends=[ape BiocGenerics Biostrings psych]; }; 745 + QUBIC = derive2 { name="QUBIC"; version="1.22.0"; sha256="0arhrnn9mfcb3jppkxvv4a1g9rpziv53y9scin2gsk1qrqk17gfa"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; 746 + Qtlizer = derive2 { name="Qtlizer"; version="1.8.0"; sha256="1a9fq4qv9qsgfkddpxdgl0m879aprf1sijmys83lrx834kggzy02"; depends=[curl GenomicRanges httr stringi]; }; 747 + QuartPAC = derive2 { name="QuartPAC"; version="1.26.0"; sha256="01v4icdwfx9l1md2wxcwh3qn8m7lc133slwdlssa0f1h6r2f7w0g"; depends=[data_table GraphPAC iPAC SpacePAC]; }; 748 + QuasR = derive2 { name="QuasR"; version="1.34.0"; sha256="0d292xgaq8d3cdpa9anabda03lis46xc29iw9c5k5i3sj7dcr4g5"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; 749 + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.28.0"; sha256="0ijig5jmh5b1dzsmibzij1hhdn4b3nz6rvjx9rdvk0rhs7nhh5c1"; depends=[dplyr Rcpp yaml]; }; 750 + R3CPET = derive2 { name="R3CPET"; version="1.26.0"; sha256="1i0jjkbnp8jc9lbbx615v7haz5dppa72fqqyps4rfqx6wbc4pizs"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; 751 + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.44.0"; sha256="1y60w0mbzv2hxs0lfx1sicn7wp1j9mmqw8pgprrf5z6nzcsc3zyl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; 752 + R4RNA = derive2 { name="R4RNA"; version="1.22.0"; sha256="1gf536j9nw8agzi6bm4dmadndg9ibkfzk0s7l5r2ahq5lsqsj6v4"; depends=[Biostrings]; }; 753 + RBGL = derive2 { name="RBGL"; version="1.70.0"; sha256="0k2p1lwdvix4n742a97lv988rx5kg8cvcmzgyzj0538n1nz0lxk0"; depends=[BH graph]; }; 754 + RBM = derive2 { name="RBM"; version="1.26.0"; sha256="0af3z0ps14mavra63xdqwbjbgq6kk9qjidahac2dbbc9ydcpdafq"; depends=[limma marray]; }; 755 + RBioinf = derive2 { name="RBioinf"; version="1.54.0"; sha256="08ydadi3xx3kgjdi4d686ag70wnw4xmn9c9jfpbi192zz1niy1nk"; depends=[graph]; }; 756 + RCAS = derive2 { name="RCAS"; version="1.20.0"; sha256="02zwz7c8ljmdcfxj54xns0a31sj616x63q63wxhxa1nb4dhgmvk7"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; 757 + RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; }; 758 + RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; 759 + RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; 760 + RCy3 = derive2 { name="RCy3"; version="2.14.0"; sha256="17jkwbg4ap6nb404hhdaqsy3ixsv8kfvap5m1qdmijw8ip8g64wq"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; 761 + RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; 762 + RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; }; 763 + REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; 764 + REDseq = derive2 { name="REDseq"; version="1.40.0"; sha256="106dx160nzjlxfg76v9g7f1rjpiwfrsab7639x94s62v2g51x5l4"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; 765 + REMP = derive2 { name="REMP"; version="1.18.0"; sha256="0n3ymwgq2bfix6qjgakib08hs0dw2cq838l79d3db3dxjaix8rs2"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; 766 + RGMQL = derive2 { name="RGMQL"; version="1.14.0"; sha256="1ywmgqlzhjiv5hygq9lknahm94wz6xfxnc7wdpkaw4vri9lsdr3h"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; 767 + RGSEA = derive2 { name="RGSEA"; version="1.28.0"; sha256="1bv8kg3npac1qlrj6mpx6f89avjqfp937w99f7iw60yqin8psa89"; depends=[BiocGenerics]; }; 768 + RGalaxy = derive2 { name="RGalaxy"; version="1.37.1"; sha256="093dqjgsz4x4gw6wdbdbyjq3jazn64g7gndld0bxm4yw8ijg2s2x"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; 769 + RGraph2js = derive2 { name="RGraph2js"; version="1.22.0"; sha256="16pim49wls085ahaqac26ah7mx2a6ww9gf7s1rdsikr56xcnkzsb"; depends=[digest graph rjson whisker]; }; 770 + RIPAT = derive2 { name="RIPAT"; version="1.4.0"; sha256="1kkavimbx8nq7qnddj363kvsv08sckk8j136xlh48fma0r8h3n43"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; 771 + RITAN = derive2 { name="RITAN"; version="1.17.0"; sha256="02xp9f0kz443k98r3ncj67wqiipdl5iww9kbkdg9mxgwnahvbff9"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; 772 + RIVER = derive2 { name="RIVER"; version="1.18.0"; sha256="141qk3bl9ksc3sxpdfja8siw22njmdaic4zap1pm9nk6gssd9g1c"; depends=[Biobase ggplot2 glmnet pROC]; }; 773 + RImmPort = derive2 { name="RImmPort"; version="1.22.0"; sha256="0fm29zlj8qllqi02h20l4ipf9ppqmajkk9mc9zr4nbx6pspxmk4q"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; 774 + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.18.0"; sha256="0k4dk8m1pmgflyrwa8szkbfwqqrz8b0xnnf1df200npyrw49mb22"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; 775 + RLMM = derive2 { name="RLMM"; version="1.56.0"; sha256="08jwzj8k1r36xryy515x67lkb6w4czgsdr05ip370m8f1gsm9vrl"; depends=[MASS]; }; 776 + RLSeq = derive2 { name="RLSeq"; version="1.0.0"; sha256="07llq48pnk62jzh4s0ars3j9grfkc6ii4mhwimvdviiskvk8j32g"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; 777 + RLassoCox = derive2 { name="RLassoCox"; version="1.2.0"; sha256="0df7mrf8wb4zvp5vb2j954wwb8b7xsygilc57s6shkhspappkasz"; depends=[glmnet igraph Matrix survival]; }; 778 + RMassBank = derive2 { name="RMassBank"; version="3.4.0"; sha256="1awn7yb4ypnah038hh4my2v42ajsfi1spaljfzwpm520y5dqxlnz"; depends=[assertthat Biobase digest enviPat httr logger MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; 779 + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.6.0"; sha256="0cqghkz6vqlbci4g1m3km9l20w1dfggag718bxisnm49p21bnzca"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; 780 + RNASeqPower = derive2 { name="RNASeqPower"; version="1.34.0"; sha256="0hma29rp0349rmfpdrchkpivq8xqzlkrxigfc25ypx05ii1phkxf"; depends=[]; }; 781 + RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; 782 + RNAdecay = derive2 { name="RNAdecay"; version="1.14.0"; sha256="07x1s87q3w4v3ma96hr5jx08p3yjqcab2cnr44j3jvc5c1pzpiiq"; depends=[ggplot2 gplots nloptr scales TMB]; }; 783 + RNAinteract = derive2 { name="RNAinteract"; version="1.42.0"; sha256="0nr9f6lrbyclmpnsnbhcd2y5qh6cp5vzq1gkylq1lb99pawhr9qi"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; 784 + RNAmodR = derive2 { name="RNAmodR"; version="1.8.0"; sha256="00spb46rx8bl93pc3v7mkfbrq7bvq8sfnqym7vs7kymv36a8g42y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; 785 + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.8.0"; sha256="17cj2834fl2yfkng5776cbahjfirfl0lggfcawa3gsxgjclnw3lv"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; 786 + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.8.0"; sha256="1dzcbmk416dzl0isbkn3sjrhmb0rkdd6z071iwinf35iyza16y2i"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; 787 + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.8.0"; sha256="1sspi9ng7a6mzkn0m1p94vsd6v0ymclw320gi7awjbfdvpci20sw"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; 788 + RNAsense = derive2 { name="RNAsense"; version="1.8.0"; sha256="06mg6cpra1xx9yq4ic8qr5ixz1s21af9wv1rm07ywhwqnq9pbgr7"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; 789 + ROC = derive2 { name="ROC"; version="1.70.0"; sha256="1mgxpv5p6gnv04wzkcryrg5as5xrxvlqlkkcbv0k1bx9y6ykijy9"; depends=[knitr]; }; 790 + ROCpAI = derive2 { name="ROCpAI"; version="1.6.0"; sha256="1ims2ppbbwrp1wzg917jr9g08zbbhj38m1prj1yk9ix3inndbpdi"; depends=[boot fission knitr SummarizedExperiment]; }; 791 + ROSeq = derive2 { name="ROSeq"; version="1.6.0"; sha256="077r63i0j47dxh4mdsx661bv9kavgmgmiy5a522cxwh5b37pkaxc"; depends=[edgeR limma pbmcapply]; }; 792 + ROTS = derive2 { name="ROTS"; version="1.22.0"; sha256="0qhy984y83a3nf4zw54rasw3vn932q4zb3gljifkw701jnrzqmki"; depends=[Biobase Rcpp]; }; 793 + ROntoTools = derive2 { name="ROntoTools"; version="2.22.0"; sha256="0h88d8wwqnv6alrxd7j2nzr8drqdkfl8b8sgy4wzclyin2qy71ln"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; 794 + RPA = derive2 { name="RPA"; version="1.50.0"; sha256="1ikz7l119n644hv6hhdykdsh6kahcigcwi1j8sm0cksvrbblsp25"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; 795 + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.6.0"; sha256="04qlhbhdchpr35rdc6jc3y8fy6znnfrdlsb8am04agbrvpjgrx10"; depends=[]; }; 796 + RRHO = derive2 { name="RRHO"; version="1.34.0"; sha256="03r18j91xy7gjzpgi9mpdrv99an8422y9mxll5fqszllikivfkvz"; depends=[VennDiagram]; }; 797 + RSVSim = derive2 { name="RSVSim"; version="1.34.0"; sha256="19adi8vyjyz5g7fcr77ag2wn745qzslps137r2wa2ah7175ny6rr"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; 798 + RSeqAn = derive2 { name="RSeqAn"; version="1.14.0"; sha256="0x1w1bbz5395g8m51avkhb7gswjxl93cq9xd5mh3f8b6mybahbwy"; depends=[Rcpp]; }; 799 + RTCA = derive2 { name="RTCA"; version="1.46.0"; sha256="142v1938ba077v26kassym5jdz4zai1pwbql9zpibvzxgg1r7vr4"; depends=[Biobase gtools RColorBrewer]; }; 800 + RTCGA = derive2 { name="RTCGA"; version="1.24.0"; sha256="1h904df27mcqh8ic0wb5v8r4afzznfb8ihibcs0s8zvsnlqa9jrg"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; 801 + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.24.0"; sha256="1hg9i1z27i3l49vc3k4dda2qr93rqdjla8raxv7j1flbs9ximh77"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; 802 + RTN = derive2 { name="RTN"; version="2.18.0"; sha256="0yjbvcaci77xbxkl35i03vdmd2ascaphv2lpagcib4wlj2qsg57y"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; 803 + RTNduals = derive2 { name="RTNduals"; version="1.18.0"; sha256="1h646yysi879v1w60sc1f6wckyz788cq2psyihnp873k001yzgv9"; depends=[RTN]; }; 804 + RTNsurvival = derive2 { name="RTNsurvival"; version="1.18.0"; sha256="158ffqrysprfx5g5m9mc645bjcpdjr3cksl521jc4ak401va7l7l"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; 805 + RTopper = derive2 { name="RTopper"; version="1.40.0"; sha256="18x3qmqxh6y64bmp2a8d7f794inglx7mvaiva5rs04y26qlwww9s"; depends=[Biobase limma multtest]; }; 806 + RUVSeq = derive2 { name="RUVSeq"; version="1.28.0"; sha256="1a19klscykdgsd7izcxyr45ml7g0gpdj65gvbaw124mal2p4zi9q"; depends=[Biobase EDASeq edgeR MASS]; }; 807 + RUVcorr = derive2 { name="RUVcorr"; version="1.26.0"; sha256="0va76nl1j4f5cs1d7cxz2gx7v80r42ia178c9nb2fb91lmahalsn"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; 808 + RUVnormalize = derive2 { name="RUVnormalize"; version="1.28.0"; sha256="1yqnp1fpln7g4h20fikr9hh7x80s93pdip9g612m0djp5p2xlvlx"; depends=[Biobase RUVnormalizeData]; }; 809 + RVS = derive2 { name="RVS"; version="1.16.0"; sha256="0m44bdyi1fnmgymyl7yb875930ydpwaqgc5dsx2fyqngnj7l8fh2"; depends=[GENLIB gRain kinship2 snpStats]; }; 810 + RadioGx = derive2 { name="RadioGx"; version="1.4.0"; sha256="1fnfsx72lfs9hjxnvcyh500fxfvvxj95krpvsx9bv0n9z14j8b9v"; depends=[assertthat Biobase BiocParallel caTools CoreGx downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; 811 + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.18.0"; sha256="1ml68mi61wr2lk3zq1bbpb567jf0mybs76384qzml35n89a0x6ja"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; 812 + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.14.0"; sha256="01aqp4yxph21vv2jmkx1lv2kxpvyqv83pp7r3xynilp4kbfjvr3q"; depends=[dnet igraph Matrix]; }; 813 + RankProd = derive2 { name="RankProd"; version="3.20.0"; sha256="1g97z1dl1m9f7zx2lrs66rl2arcc7fmfvzmash2vz0362m2isj5i"; depends=[gmp Rmpfr]; }; 814 + RareVariantVis = derive2 { name="RareVariantVis"; version="2.22.0"; sha256="1pvssz6akpvl0kc81dg9l4n033fb4py4wrp7rmb16g1w2mwz27aw"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; 815 + RbcBook1 = derive2 { name="RbcBook1"; version="1.62.0"; sha256="1752107f8xwra0rskz1r0661k5vb39a72lx0rpb9yzk8nvlvrfj0"; depends=[Biobase graph rpart]; }; 816 + Rbec = derive2 { name="Rbec"; version="1.2.0"; sha256="0gmd9hj4vhg0bgbd3j72hm02n2cbdz35r40kkh6r872bhbi8fjpd"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; 817 + Rbowtie = derive2 { name="Rbowtie"; version="1.34.0"; sha256="0ardmryx6ac7v6n900a1klrrldvbmh7bxvy8ldz8rwid19h29ikr"; depends=[]; }; 818 + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.0.0"; sha256="0xpvrx2ak9x913sym4l46ycwbnmpcdwb3bf3dfd2gsp0krv8vh1x"; depends=[magrittr Rsamtools]; }; 819 + Rcade = derive2 { name="Rcade"; version="1.36.0"; sha256="0drggwwnjvirnzg8g79ba784w57zbhppp1f40d3gql0f7hajhwxs"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; 820 + RcisTarget = derive2 { name="RcisTarget"; version="1.14.0"; sha256="1qarr7xd71kz1haccj65x7sc7pc4v6xpqcfa3rkyp2bk240gigi7"; depends=[arrow AUCell BiocGenerics data_table dplyr feather GenomeInfoDb GenomicRanges GSEABase R_utils SummarizedExperiment tibble]; }; 821 + Rcpi = derive2 { name="Rcpi"; version="1.30.0"; sha256="0hn31hfyygnz6dc78m5xi5ivgpr048a292si1h4pxnbz6ldwfqb8"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; 822 + Rcwl = derive2 { name="Rcwl"; version="1.10.0"; sha256="1hz7r8qdcvxpqhfq9fak9pydmxs97swn1wlh2dg2k2rd64msj3qy"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; 823 + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.10.0"; sha256="0yzihadrf5rx1jj33b1fa9a3nffw7nv84fh70pb5p6g15v7wm5k0"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; 824 + Rdisop = derive2 { name="Rdisop"; version="1.54.0"; sha256="1v3k6dp9q4q23vcpak01cdl353q66y88667dcq7cv020nw9nf1pq"; depends=[Rcpp]; }; 825 + ReQON = derive2 { name="ReQON"; version="1.40.0"; sha256="14v79vg3pmpkbzgn8xqd020jdwcs8g57d46bzl23yi3w1rsfbrb1"; depends=[rJava Rsamtools seqbias]; }; 826 + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.2.0"; sha256="0qqimr9hfpaiswsf0mly59i64csmjcs8d0vzpavpw147vdpmpixa"; depends=[data_table doParallel foreach httr jsonlite magick]; }; 827 + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.8.0"; sha256="0ajyl4klp3x95c6mg885ra7ivifj2lpycfidxs7rag30k3rypn31"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; 828 + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.2.0"; sha256="06a7xyx39h7bjnybi0zv4mh3nzkcacylcrfy5f95a5vkh130hzps"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; 829 + ReactomePA = derive2 { name="ReactomePA"; version="1.38.0"; sha256="1f4kd5cql7knnqaq3ba48kkypw8p60lkfdsnpqxcabdj30gqp55b"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; 830 + ReadqPCR = derive2 { name="ReadqPCR"; version="1.40.0"; sha256="1wfl093waz9qij5y1jv747k3zw61brndy8l8g5bvxz9cg9mfdfvi"; depends=[Biobase]; }; 831 + RedeR = derive2 { name="RedeR"; version="1.42.0"; sha256="02idybdi52z6ilh7sl9slbnsxylydc8h6bdgk159sw3vl5w8lri5"; depends=[igraph]; }; 832 + RefPlus = derive2 { name="RefPlus"; version="1.64.0"; sha256="1z7rllspiccs0ii5g0pfgv1wkhar2svjp2cvkgxb30y1xlfggahr"; depends=[affy affyPLM Biobase preprocessCore]; }; 833 + RegEnrich = derive2 { name="RegEnrich"; version="1.4.0"; sha256="0k9965br3yx5i9smgsfp8bvlgii3a0p5zx8y4r8sygk2br4m9kny"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; 834 + RepViz = derive2 { name="RepViz"; version="1.10.0"; sha256="13qyg9z2wfhl68z9280k7272fzfsic4wp14kq160r3y67kc1jz9h"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; 835 + Repitools = derive2 { name="Repitools"; version="1.40.0"; sha256="0d4p2qnnfmqfjqjdi9xw9ngjpv0y5hg355kvk9jpccqbw5rqi017"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; 836 + ReportingTools = derive2 { name="ReportingTools"; version="2.34.0"; sha256="06kwf87h84xgswkrm7brmgr9aj1nf6cxp24hrfymkzq2pha5y5j7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; 837 + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.4.0"; sha256="0xsn4fm34a7xpkgmx3a1j2xzdaxf2hyla1062wqn04kw0k9y29vg"; depends=[DelayedArray Matrix S4Vectors]; }; 838 + Rfastp = derive2 { name="Rfastp"; version="1.4.0"; sha256="0lxpzjbh8mpyf9d37lns11w6gics42ghy2j90xq3cwmn287x2j4r"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; 839 + Rgin = derive2 { name="Rgin"; version="1.14.0"; sha256="1gyvli5dhx5wxy736zvvfvpm7a5sxv2zqpkl3nydq6czvd5xxjxh"; depends=[RcppEigen]; }; 840 + Rgraphviz = derive2 { name="Rgraphviz"; version="2.38.0"; sha256="0fyv1ybpahkwz3fawzxgxfnshi8y7c18262rgdmqwdl5662vv1p7"; depends=[graph]; }; 841 + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.16.0"; sha256="0yly9s3wdnhd9ci2jxfkql38ibv35yzs38a6g6ashbg1m5kgwd9p"; depends=[]; }; 842 + Rhisat2 = derive2 { name="Rhisat2"; version="1.10.0"; sha256="092rws9vjxgm2jpkbp6ign47zmillyyidnc7ylcbn4zr9j5lwv0y"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; 843 + Rhtslib = derive2 { name="Rhtslib"; version="1.26.0"; sha256="0pwmzwjf6agfp3bq6w8s3piwmzwjdd474qd8zmbzrm772qbadfr4"; depends=[zlibbioc]; }; 844 + RiboCrypt = derive2 { name="RiboCrypt"; version="1.0.0"; sha256="1c8pwql440jy81q2brqacs2mia1xhs29xhi0kkgknknm94m26cd4"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; 845 + RiboDiPA = derive2 { name="RiboDiPA"; version="1.2.0"; sha256="14659gpmk4wy68ap08i58vj5blhpczdyqs5hfy9rbzwrrri8k53l"; depends=[BiocFileCache data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; 846 + RiboProfiling = derive2 { name="RiboProfiling"; version="1.24.0"; sha256="1szlzvm8ggjc40k4z2fxxa2h28g6j9wj2g5aw480v9hgyvvdw5lx"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; 847 + Ringo = derive2 { name="Ringo"; version="1.58.0"; sha256="0bjsyp6gsdgny0jg363z46sihqmv0xka7mzzkv1gjhiyk7zh8gs6"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; 848 + Risa = derive2 { name="Risa"; version="1.36.0"; sha256="0fmdsl86swj1sv6j4g3ljbcxp6xqnnxjpzqabjyzbicl3flmqcyv"; depends=[affy Biobase biocViews Rcpp xcms]; }; 849 + Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; }; 850 + RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; }; 851 + Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 852 + RnBeads = derive2 { name="RnBeads"; version="2.12.0"; sha256="02zh9zlccipj3776il9szlacg1sm9rfqk62vpmxma2zn5al163a4"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; 853 + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.0"; sha256="04zf30583wdn2q7wnj3hp81sa1h4dhd6yvl22sj0yxdqw919jvrj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; 854 + Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; 855 + RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; 856 + Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; 857 + Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; 858 + Rsubread = derive2 { name="Rsubread"; version="2.8.0"; sha256="09kd7vl2z9k82ppfzy679hs7d00c60z3w3n6a8wq4z3k3f4glc3s"; depends=[Matrix]; }; 859 + Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; 860 + Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; 861 + S4Vectors = derive2 { name="S4Vectors"; version="0.32.0"; sha256="1zm1xlqrq1f9xa81j3ij2p78g3aywq7izsk3h40z94fjggahvc09"; depends=[BiocGenerics]; }; 862 + SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; 863 + SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; 864 + SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; 865 + SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; }; 866 + SC3 = derive2 { name="SC3"; version="1.22.0"; sha256="1vbzinr4aiskv9hjbqqzzy3chj48lzk9vv1zk7vr9v8w6qwlg3fm"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; 867 + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.36.0"; sha256="16d161x1npa4lh6ckp0p9ykdrj3x36gsylmq1kjm2vw8g4zknszv"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; 868 + SCANVIS = derive2 { name="SCANVIS"; version="1.7.0"; sha256="163026iz66687s7d27sj78vvn5n6df66qf0s5zxaallyx2gmh56x"; depends=[IRanges plotrix RCurl rtracklayer]; }; 869 + SCATE = derive2 { name="SCATE"; version="1.4.0"; sha256="1b04bggi0rw9jmgak5j2ca6msqdrq1qdphg3g9w77a1rqyxza86s"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; 870 + SCArray = derive2 { name="SCArray"; version="1.2.0"; sha256="1jji2cikxkc40zaqwcknrpz5a6nyrqhbirx5ivsdnwslm8l79xmk"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; 871 + SCBN = derive2 { name="SCBN"; version="1.12.0"; sha256="19jpbr5nr59dc9khbbx60gzbsg8llfd1zqwb9v88nr43v059k13f"; depends=[]; }; 872 + SCFA = derive2 { name="SCFA"; version="1.4.0"; sha256="1850c78niv5hp3c6axi5nmv4qawqca1ip3xppp2nar8f9xiqjd6l"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; 873 + SCOPE = derive2 { name="SCOPE"; version="1.6.0"; sha256="01sj416q0qzpji7k34xz37l4955fa3l2imms96k8zz1gs2a1xm3j"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; 874 + SCnorm = derive2 { name="SCnorm"; version="1.16.0"; sha256="12fi24vgrsk5l0sx8ylkzvqww157bycx8irx3j08198ds01kwbry"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; 875 + SDAMS = derive2 { name="SDAMS"; version="1.14.0"; sha256="1rppqribspgnh0b0cw1k35igybm9nc28yidv2l3rd8p3spv0w7hz"; depends=[qvalue SummarizedExperiment trust]; }; 876 + SELEX = derive2 { name="SELEX"; version="1.26.0"; sha256="0wyv02xsby1ax02n2bdy1j5qi2ph4bibmy1kvrm4m9hgr3b2c8sn"; depends=[Biostrings rJava]; }; 877 + SEPIRA = derive2 { name="SEPIRA"; version="1.14.0"; sha256="1bndk9affhbz9ppg3bqq6llf2w3m9m6bqabzjra6hqawgi0v4fb9"; depends=[corpcor limma]; }; 878 + SEtools = derive2 { name="SEtools"; version="1.8.0"; sha256="0vi9vd3xrhhk2mh2npr34p2jqf3isqfbyj988314g754c2vdzryn"; depends=[BiocParallel circlize ComplexHeatmap data_table DESeq2 edgeR Matrix openxlsx randomcoloR S4Vectors seriation SummarizedExperiment sva]; }; 879 + SGSeq = derive2 { name="SGSeq"; version="1.28.0"; sha256="15l0r6svs27k82dd472is26shwayz6rs5ylg5gpf3mldr7sa5kja"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; 880 + SIAMCAT = derive2 { name="SIAMCAT"; version="1.14.0"; sha256="0ymy12qkxf2fl8ms4va1xp8gjpi1sdwlbm9j6qfdpm8sahlxhi4w"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; 881 + SICtools = derive2 { name="SICtools"; version="1.24.0"; sha256="0i2dccdkzfrx2qvhgvnbj9rv51qxqddpk4la7js2z664f1kxcjw0"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; 882 + SIM = derive2 { name="SIM"; version="1.64.0"; sha256="15nyfzdq1a154rcn9y2z0j5qv4sgwifx3qqxpg1hcdmwkkihi9qy"; depends=[globaltest quantreg quantsmooth]; }; 883 + SIMAT = derive2 { name="SIMAT"; version="1.26.0"; sha256="1cfsj9lfxl32jinimv139b6bdl0bh4fnwkvqziwlsrlck9k6qf2d"; depends=[ggplot2 mzR Rcpp reshape2]; }; 884 + SIMD = derive2 { name="SIMD"; version="1.12.0"; sha256="0bsp7ma0c9j9k3agxchyp54kp126qjvgmaqgi2flgmgwnmkwwbii"; depends=[edgeR methylMnM statmod]; }; 885 + SIMLR = derive2 { name="SIMLR"; version="1.20.0"; sha256="19vhv7j29hiimznazpz986api12ry6pd8cgpkwrnwybr4gdvkm7c"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; 886 + SISPA = derive2 { name="SISPA"; version="1.24.0"; sha256="1gzcc2vq9wvsh92lp80y0dlsi67bws6ng76ab2a4ak1n2lqhm7ak"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; 887 + SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; 888 + SLqPCR = derive2 { name="SLqPCR"; version="1.60.0"; sha256="1sy722nw7fax0m9nnv2d3gy9g5fc4x2xfar521x7x7psfydmy5b6"; depends=[]; }; 889 + SMAD = derive2 { name="SMAD"; version="1.10.0"; sha256="1l0x22cg14aj40039jzw1yl3cncil91nv97y9sqs54ay8rvyr5aj"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; 890 + SMAP = derive2 { name="SMAP"; version="1.58.0"; sha256="03fdxaqsxjdq93xazw8rgv22smdwr0ji1rcf6rk20a0p0wvrdpxh"; depends=[]; }; 891 + SMITE = derive2 { name="SMITE"; version="1.22.0"; sha256="0wbhw8mi346h496r31i8da6jf6n5immhqffirvf67fzv6dim3v42"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; 892 + SNAGEE = derive2 { name="SNAGEE"; version="1.34.0"; sha256="1888qd2b1qmcvprp83qd02pp3bj0gipabbvr4xzn36crw4rwdksv"; depends=[SNAGEEdata]; }; 893 + SNPRelate = derive2 { name="SNPRelate"; version="1.28.0"; sha256="011880cnpr6nnzf72n34b0bj5766iw5h4lm0zl0zdmpcgx95h24i"; depends=[gdsfmt]; }; 894 + SNPediaR = derive2 { name="SNPediaR"; version="1.20.0"; sha256="1ljzj3fxqpfz75ax8smcfrghiw5hb7yv7hkn8i8ffwszni9ml63f"; depends=[jsonlite RCurl]; }; 895 + SNPhood = derive2 { name="SNPhood"; version="1.24.0"; sha256="137lqpvjpr9zxxz26cigs55p2lkchs9jaljsw3bwsqrj9vki4rqr"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 896 + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.2.0"; sha256="03px2q7rxcxppshlsy5vd50y1whzjs4cigjz78jnkhd3pi3sxq5s"; depends=[Matrix mgcv VGAM]; }; 897 + SPEM = derive2 { name="SPEM"; version="1.34.0"; sha256="187zvdd5j4f971zx6ppgws0jwalr4wqwmwj72ngcrn0fk3lzwv38"; depends=[Biobase Rsolnp]; }; 898 + SPIA = derive2 { name="SPIA"; version="2.46.0"; sha256="0q8f32z8dm8jl295y88p5cj1rydkkxf9i1pvgnflwjqybn02kz0g"; depends=[KEGGgraph]; }; 899 + SPLINTER = derive2 { name="SPLINTER"; version="1.20.0"; sha256="0qf35kxq6gyf401x59v1y92hf8fnd2vkjd4zsjrhf8bck80a6hy9"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; 900 + SPONGE = derive2 { name="SPONGE"; version="1.16.0"; sha256="18fkw98b9m197n214fm646nr0grjsfhkqs2m2cx6v4aia5kn2rk3"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; 901 + SPsimSeq = derive2 { name="SPsimSeq"; version="1.4.0"; sha256="1s9vcb58sbr7p806palz7ak5dpqimj9ic4ycv34ymzmdsnyryiwb"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; 902 + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.8.0"; sha256="1i5jjc65akd32klgsrfr4p9mvn6mzzjh6lmnh0zznxkfwsb37l8g"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; 903 + SQUADD = derive2 { name="SQUADD"; version="1.44.0"; sha256="02lby5pyvmkr4im96s6av4iz12l4w3j2pil0mbnxmnzlxn58bxgw"; depends=[RColorBrewer]; }; 904 + SRAdb = derive2 { name="SRAdb"; version="1.56.0"; sha256="18z62c2w6spsmnyqcmc57w41vli5vrcrl3hpy1al1n1yy9fgil0y"; depends=[GEOquery graph RCurl RSQLite]; }; 905 + STAN = derive2 { name="STAN"; version="2.22.0"; sha256="1inqjw11a791c6svw0y4p3m8rd09fjcna3j4p5950f975aph1q4g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; 906 + STATegRa = derive2 { name="STATegRa"; version="1.30.0"; sha256="10a230bvfjvjwsjkh0v3fjbrjkwcvsdch8bfv1s6h4yav1m4wca7"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; 907 + STRINGdb = derive2 { name="STRINGdb"; version="2.6.0"; sha256="1hvb73anhbf1g82nn5m11s783z6ihvlavf7p30w29qggxggnl6lm"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; 908 + STROMA4 = derive2 { name="STROMA4"; version="1.18.0"; sha256="10v8kgmx79zd2vgzwij3il80l724sdl0k4a3rm73kd4jw2wvhkrh"; depends=[Biobase BiocParallel cluster matrixStats]; }; 909 + SWATH2stats = derive2 { name="SWATH2stats"; version="1.24.0"; sha256="0ifl1y3rs0r2zqkpcpiibyv12mjqz6wxs296f691k1qfz9qvx8kg"; depends=[biomaRt data_table ggplot2 reshape2]; }; 910 + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.48.0"; sha256="1xxz5ggxj10psrz5rm0xjr8mxwc3cfyl9chsa9w2wxrrixypdnah"; depends=[]; }; 911 + ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; 912 + Scale4C = derive2 { name="Scale4C"; version="1.16.0"; sha256="0gw89mnnpspi5y03ck8gqinnwbkykmf2k65gxm8m9j4l63gg33m8"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; 913 + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.2.0"; sha256="0vz8441gl5gycy1ypybwhq97bnyvhhlg6gxpi1dsdy2c9b6d81kc"; depends=[DelayedArray Matrix S4Vectors]; }; 914 + Sconify = derive2 { name="Sconify"; version="1.14.0"; sha256="0dan0nbar8f5x6l7cwlx4f4yycpxj3j3f0xx3nfm8n07g1gbcf04"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; 915 + SemDist = derive2 { name="SemDist"; version="1.28.0"; sha256="0291sqa4lhrfr2j6fdag814xzawvnqsdw8xbmh0kgv6jd2pqk2am"; depends=[annotate AnnotationDbi GO_db]; }; 916 + SeqArray = derive2 { name="SeqArray"; version="1.34.0"; sha256="13fl5ls2xqka1dixxf428gqy18vg9q1xnmp4l9whxg97nppbjs81"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 917 + SeqGSEA = derive2 { name="SeqGSEA"; version="1.34.0"; sha256="0829rasz7lrhsm7w248dy9s4fzx2qmdkxvkgzakf2vn1j4h2x63v"; depends=[Biobase biomaRt DESeq2 doParallel]; }; 918 + SeqGate = derive2 { name="SeqGate"; version="1.4.0"; sha256="155jii2mjpvcpif0yrjamb5220qiw00sk0yag14n47vv8gdyxncw"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; 919 + SeqSQC = derive2 { name="SeqSQC"; version="1.16.0"; sha256="0bqfqg4gr3f5j9m5wnj7rpkia1dgmkwj5kr7fn82cq19qrz2hi7k"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; 920 + SeqVarTools = derive2 { name="SeqVarTools"; version="1.32.0"; sha256="0axiq33djppcvapz6ykpr6drd8b1lwd5xa458spqyaxj3f061l66"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; 921 + SharedObject = derive2 { name="SharedObject"; version="1.8.0"; sha256="1v6r94dp1lfx7kvbvw56pzshyrpsvpq3i92gld6b4gs51jc5si29"; depends=[BH BiocGenerics Rcpp]; }; 922 + ShortRead = derive2 { name="ShortRead"; version="1.52.0"; sha256="1p17v15wd3v6w9ligpjjk28vy8k2ql57y2hhm8y6vnv9y3nagjsx"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; 923 + SigCheck = derive2 { name="SigCheck"; version="2.26.0"; sha256="1wl06yipz59gqw9swj9sspzgbpn9g8r5vs9wgbr9kbya0yv225k6"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; 924 + SigFuge = derive2 { name="SigFuge"; version="1.32.0"; sha256="0kayrdjakcg6wbiwncx3jmg7abnym18jj2wr2yfd980g0c387zbg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; 925 + SigsPack = derive2 { name="SigsPack"; version="1.8.0"; sha256="07fz6k2bcvbwdnqabvd9r4q4fnkmxsrn6jldgwyqg0gh4jjmnqfw"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; 926 + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.32.0"; sha256="08lsr5b57lrkqryc51s25hmfhcfd45lvwdzn8a4f12961vzzdrj6"; depends=[Biobase limma mclust Ringo]; }; 927 + SimFFPE = derive2 { name="SimFFPE"; version="1.6.0"; sha256="00f1f1frkslls6ra0bi98g26nn7l8vpplcc0vz7b9jhjic5bys8p"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; 928 + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.16.0"; sha256="01075vbs8hy399pxalav9rbkz4djvl84ip559jkz51fypd0m4i39"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; 929 + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.6.0"; sha256="1iw9yis5d6m2bzqkyncz5cy49rncnjrbzwah4c3il8aq5a21hrfh"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; 930 + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.2.0"; sha256="0abaxk5ck81libsfhy1w9jx1jjf7cix7znl2gydh2fd5qaafzfd3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; 931 + SingleR = derive2 { name="SingleR"; version="1.8.0"; sha256="19lsn3cpghkhfbx4jqgbwwrnacrl7vj3r91ymd1gk02c9pn5dmci"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; 932 + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.30.0"; sha256="1dxzfkvljnydv7kfybfa52dwcbkkci2r8gjspjf90k2bxf10phql"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; 933 + SpacePAC = derive2 { name="SpacePAC"; version="1.32.0"; sha256="1pgpfxyw621f7ljwy4y6q9fdlk263b4rwz9vg1f2h61nz097nk2l"; depends=[iPAC]; }; 934 + Spaniel = derive2 { name="Spaniel"; version="1.8.0"; sha256="0js302hgxn0q9xy7s6pdxidvhfcvm711bci6cw3a3bwhq2kacvnc"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; 935 + SparseSignatures = derive2 { name="SparseSignatures"; version="2.4.0"; sha256="0hz48bvw20qdvfb5ci4d9zq3znpzklv0mhhxrpd8n23xv8amby0l"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; 936 + SpatialCPie = derive2 { name="SpatialCPie"; version="1.10.0"; sha256="0ml8fbjhnb2azvfcplpaw2zfvngkxn7z81d1s5f2shiww6x3qb8f"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; 937 + SpatialDecon = derive2 { name="SpatialDecon"; version="1.3.0"; sha256="1gbkdp2d5x6apmlv35rg1vjfnfsyp1dvchgdlq4yzqkslc7jib7y"; depends=[logNormReg]; }; 938 + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; 939 + SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; 940 + Spectra = derive2 { name="Spectra"; version="1.4.0"; sha256="1kgwm040j23mjihym0kg5r9qz4f1ssfvnd3f6m5jasx59wgpv46f"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; 941 + SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; 942 + SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; 943 + SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; }; 944 + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.34.0"; sha256="0yks0iwh57795a3r9wmbc88afixw2p21dqmp9mh7a74zxyms51xl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; 945 + StarBioTrek = derive2 { name="StarBioTrek"; version="1.20.0"; sha256="1bxbqgjg8a5px6429raf1rlwjaj1z95w952icjpjx7602q890mrh"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; 946 + Streamer = derive2 { name="Streamer"; version="1.40.0"; sha256="1hcjazhyg7g7yh1nnz39yjkh77291wpzm03bd1jspgvrjz28cv5w"; depends=[BiocGenerics graph RBGL]; }; 947 + Structstrings = derive2 { name="Structstrings"; version="1.10.0"; sha256="0dkzrb5dx0spgkzzwwcs04dwjxacm9sl6jch120amh22v5y7wyzm"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; 948 + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.10.0"; sha256="1pw7d39944dwk5gw6q7igcn866zpqwz01ljaha2ih5dfvmhxka8n"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; 949 + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.10.0"; sha256="039fz7byy5whzm59gqar0784rv0axh6zw49jvh9p49wj2zx8pxzc"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; 950 + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.12.0"; sha256="1vld4hzv3zbv7l0i4i8wkjn0rgn8f9lvxb6x2vw6qw47fn11skxw"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; 951 + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.24.0"; sha256="0qpnx2aii9vs7fcp0ax5j77ysbhi4qhjhm35vnygs3isbrjn925a"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; 952 + Summix = derive2 { name="Summix"; version="2.0.0"; sha256="1bn5zsd3fnga8lski6ahh7fbm310n6awz27nafwzm6m9pzybwv49"; depends=[nloptr]; }; 953 + Sushi = derive2 { name="Sushi"; version="1.31.0"; sha256="1cj4palsq99vnwihp6z9mw0f8w9qj2vq8zwnabf3bgg0l1wpsc7c"; depends=[biomaRt zoo]; }; 954 + SwathXtend = derive2 { name="SwathXtend"; version="2.16.0"; sha256="01hjjx50fwwicvwci4x191cq8rvlh2v6gnpi5wb1mjqnyngrfzgb"; depends=[e1071 lattice openxlsx VennDiagram]; }; 955 + SynExtend = derive2 { name="SynExtend"; version="1.6.0"; sha256="1r0f1yv6dxxc2k1q7vbcw6bjsk0j7ryvlp8hzmjfwi37cikril72"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; 956 + SynMut = derive2 { name="SynMut"; version="1.10.0"; sha256="069pahvhsvnsbz8mvw4mgdqdh5bd26jv5gf8m4h5ys7c7sgn7a7f"; depends=[BiocGenerics Biostrings seqinr stringr]; }; 957 + TADCompare = derive2 { name="TADCompare"; version="1.4.0"; sha256="1qywd8zm21578yfswgwwgwlhphms8m4acqr47zn8dj1qk8578q5k"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; 958 + TAPseq = derive2 { name="TAPseq"; version="1.6.0"; sha256="0y40z1xpqif09yins9jf4k0h7wljdf3qwgzykxcq5lfgns66cx91"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; 959 + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.6.0"; sha256="0sdgbkg0mv742y9b7frp4i2zrknfw87ghz6wvw4w0y0gjrbasj9r"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; 960 + TCC = derive2 { name="TCC"; version="1.34.0"; sha256="0298zfvrs7x6050s3222fg5yp60siz85pfh6541wmah7j0wzpgsd"; depends=[baySeq DESeq2 edgeR ROC]; }; 961 + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.22.1"; sha256="0114pwbxg6mdhv94g556krl08ig7nwaafrryxbjha4hvn0xwy36l"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; 962 + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.20.0"; sha256="0941xcd42kz72vlhlm93681dwgi4afli5j8cfs331fpddpv7l4af"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; 963 + TCGAutils = derive2 { name="TCGAutils"; version="1.14.0"; sha256="0gjmgz20hmy8c7igy5xvwql37k0v7662qkxwsc2vi01x6y781bcj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; 964 + TCseq = derive2 { name="TCseq"; version="1.18.0"; sha256="1kzz3fl19d1ivb6l55xadwg202vq4wza3r7wgf6fx196s20vnvng"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; 965 + TDARACNE = derive2 { name="TDARACNE"; version="1.44.0"; sha256="0rjlwj05fw0y4q02lhvdg0blpqrgxjq5kdq0hff94qjwp7fgn5gn"; depends=[Biobase GenKern Rgraphviz]; }; 966 + TEQC = derive2 { name="TEQC"; version="4.16.0"; sha256="08jllnzsfz0zkn2m8n5c6cppjbh5cm8kpgwq652bgw5jmkkpg3f2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; 967 + TFARM = derive2 { name="TFARM"; version="1.16.0"; sha256="0dr3ifa3m115vgyk7501jp6h4wci04y9bqf41ixd40dwspd0dzjw"; depends=[arules fields GenomicRanges gplots stringr]; }; 968 + TFBSTools = derive2 { name="TFBSTools"; version="1.32.0"; sha256="0j5gv145fczzdspwhbywlg47y05pgnkra9jg7bn4wa1k0cf5pr9g"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; 969 + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.14.0"; sha256="0wdl9lmyfyfdh8b3r1nxzjdwasly3i3vzhbqqpf18p1xbh8zkapm"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; 970 + TFHAZ = derive2 { name="TFHAZ"; version="1.16.0"; sha256="05lnidls85b4r9xnyi0a3b26jv7nmjd7fwhgzrkrz3938nwh5xl2"; depends=[GenomicRanges IRanges S4Vectors]; }; 971 + TFutils = derive2 { name="TFutils"; version="1.14.0"; sha256="00j83p8npzlphfcf1vmws65fy8cx109ksi2cmgnnizz5xj4xflaz"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; 972 + TIN = derive2 { name="TIN"; version="1.26.0"; sha256="07m8q3lgcflmrchpw88y4w62iwq5cxd0sw1lbassvgych7dnq3ks"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; 973 + TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; 974 + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; 975 + TOAST = derive2 { name="TOAST"; version="1.7.1"; sha256="1r0kpk6i1b5r5swp4l5yw8mid719li4yqa82p9kzmgg7z0xxvmaz"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; 976 + TPP = derive2 { name="TPP"; version="3.22.0"; sha256="1sa5scbv3ck17v02czmj8c9kva5xzdbcqpfm4l9p4wn8xw6v9hk3"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; 977 + TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; 978 + TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; 979 + TRONCO = derive2 { name="TRONCO"; version="2.26.0"; sha256="0xjjv67mcgb90f6r3i6qy9d8k6sif4asq7qiiq1bhs90806jrrsb"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; 980 + TSCAN = derive2 { name="TSCAN"; version="1.32.0"; sha256="1vkkwwdhh80j67clkyn7x9ld86dhisgxp8kgv86va501fgpm11qk"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; 981 + TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 982 + TTMap = derive2 { name="TTMap"; version="1.16.0"; sha256="1zbngv7zgnsjp601q0958547d9fxg7dlj36sywg0qa322mbj3skb"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; 983 + TVTB = derive2 { name="TVTB"; version="1.20.0"; sha256="0vpx7sryvwzrxlj2mav3mr27k3lbi1mn32ajlzypvsz1aw1pzqm5"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; 984 + TarSeqQC = derive2 { name="TarSeqQC"; version="1.24.0"; sha256="0303kqwgs442vf0j0rpw15qjk6snvayd9rrjbll8gjnv34xzmw7d"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; 985 + TargetDecoy = derive2 { name="TargetDecoy"; version="1.0.0"; sha256="0bvby24gqwkxmcq0d9c5ix5kx1svc59vcil5xv0fmsdzp9bgv4c4"; depends=[ggplot2 ggpubr mzID mzR]; }; 986 + TargetScore = derive2 { name="TargetScore"; version="1.32.0"; sha256="15yh0ms1i38541kf7lxjk3xs9gpm4ixaykq6mhn572slkxdx737y"; depends=[Matrix pracma]; }; 987 + TargetSearch = derive2 { name="TargetSearch"; version="1.50.0"; sha256="0ikwbgrjp8i5g27acs4qzr8v7gzky209w3zdb6877y9hpvl5kvyv"; depends=[assertthat ncdf4]; }; 988 + TileDBArray = derive2 { name="TileDBArray"; version="1.4.0"; sha256="007qdq6w0i9b2mbcdbdjm62nzwy15scsxml6fqr0fwgzjfzvzb0z"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; 989 + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.12.0"; sha256="0fphnkkd3i7zf33a9lhw95n80vzv1z7fmn7mhrfb949yz4jdvk7d"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; 990 + TimiRGeN = derive2 { name="TimiRGeN"; version="1.4.0"; sha256="1lpvw24gnm1rdl4p2vxh07z82x7wcwcpmak7rjh3yq409lwi72i0"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; 991 + TissueEnrich = derive2 { name="TissueEnrich"; version="1.14.0"; sha256="0gbk3773b1xm801jh4nmys06917xy31j64mfc3pjap4rsssqbg2r"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; 992 + TitanCNA = derive2 { name="TitanCNA"; version="1.32.0"; sha256="1syfhh66qgayxq6apyzgj9vxj4k52w09ryfip7briii7xip9b414"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; 993 + TnT = derive2 { name="TnT"; version="1.16.0"; sha256="1l1fkxkl2q0h5abjbmzz2chm4xavd6ysigsqqa7d2afgvgn92p2l"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; 994 + ToxicoGx = derive2 { name="ToxicoGx"; version="1.4.0"; sha256="0l4a3263h6vjxrh6xawjz1hn4ksh7r0a7fch1k2sm3jb0rwhhgdp"; depends=[assertthat Biobase BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; 995 + TraRe = derive2 { name="TraRe"; version="1.2.0"; sha256="1sz7cb3fcpzi3hg5w27cx19366p0767hz8v945s35z9iax2a7bdp"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; 996 + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.2.0"; sha256="1agvbkdkzfg72m8iy9wawgrsgps12d6ml5zprab8q9qx5ajsp7y4"; depends=[ggplot2 pracma rgl]; }; 997 + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.2.0"; sha256="0pzm1h69bg04a2v09r8c6pb3pix6f3n5dylvbv7wsp574qfaqyd1"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; 998 + TransView = derive2 { name="TransView"; version="1.38.0"; sha256="1idhac2vrjyhx1750xx3d9pbnpi5404wn9ppqsdgcscyb124p1ph"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; 999 + Travel = derive2 { name="Travel"; version="1.2.0"; sha256="0knj8ih6sfa9iqm0b327bmn2cr15g01yyfm0nlv68xvvb7d85ij7"; depends=[Rcpp]; }; 1000 + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.6.1"; sha256="155nnq466v5li63idj5iylydl60pfnqrhqb300qjcsw2yi3fvdv4"; depends=[ape igraph RedeR]; }; 1001 + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.2.0"; sha256="168n1y6qzlssf6r3di49gmd2vlkspgf82f70q0rwkp8my46wiiz1"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; 1002 + Trendy = derive2 { name="Trendy"; version="1.16.0"; sha256="0apmyzkzm599f3a8p2qgc8frkpy22kv3295q4wrrwl028ky8ksjx"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; 1003 + TurboNorm = derive2 { name="TurboNorm"; version="1.42.0"; sha256="0zzkjyqpbnm6974xcik8jjkapplzlbqcq7y1ml1xwg79hkfvvhfr"; depends=[affy convert lattice limma marray]; }; 1004 + TypeInfo = derive2 { name="TypeInfo"; version="1.60.0"; sha256="0b1wp6cdcdd0r92rvkb3n0zgp6zy2421akqmip9i8bbfwxvf1m2w"; depends=[]; }; 1005 + UMI4Cats = derive2 { name="UMI4Cats"; version="1.4.0"; sha256="004gakcsg9wnns17irps57wn70m4ws8xh2yhb34g1a7jvzwfyss6"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; 1006 + UNDO = derive2 { name="UNDO"; version="1.36.0"; sha256="0vymwbngyhz1b2ndbm3d3szfb8206ci9v6vi6jmzqq3y1my316r9"; depends=[Biobase BiocGenerics boot MASS nnls]; }; 1007 + Ularcirc = derive2 { name="Ularcirc"; version="1.12.0"; sha256="02cc5hw25m8dkm0g2riffalmfkr1wfxvy84s7lw29npiyx0s9hjk"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; 1008 + UniProt_ws = derive2 { name="UniProt.ws"; version="2.34.0"; sha256="0ldds8x2m6na24lsdfy6xgnkmxv61ji1vv5nnflw9xcn3cp0nqfw"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; 1009 + Uniquorn = derive2 { name="Uniquorn"; version="2.14.0"; sha256="188clr002mmp0g0kc04mwhgq6cqfygkmhhc18wjjwpy9cczr1gg8"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; 1010 + VAExprs = derive2 { name="VAExprs"; version="1.0.0"; sha256="0yccdqb5k5wzha0nl5zsp61iagyafbxfb3yda9x7vicalg8chsdh"; depends=[CatEncoders DeepPINCS DiagrammeR gradDescent keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; 1011 + VCFArray = derive2 { name="VCFArray"; version="1.10.0"; sha256="0kqqw00nwcigqjlk5h61b4y0q0ss3h8n8cjx5jblf74bzf69ppxm"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; 1012 + VERSO = derive2 { name="VERSO"; version="1.4.0"; sha256="1sbnl3lz9f3bvxzlcdcp1bz2jwyyv3acsahzhwgxhd25b9s4kla0"; depends=[ape Rfast]; }; 1013 + VaSP = derive2 { name="VaSP"; version="1.6.0"; sha256="1z98284yysnpkg01rr61a4q194xllq1zlp9drqfxfldnyyipby9y"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; 1014 + VanillaICE = derive2 { name="VanillaICE"; version="1.56.0"; sha256="1vlajwp310aix67pvsm5ih5m8m5n5wv23h5nfq23m6hy8nxkygwq"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; 1015 + VarCon = derive2 { name="VarCon"; version="1.2.0"; sha256="1iay3m5mf9ck46zpkqw3hf7cv00jgvg05k8705wkgaj6gjajs7ga"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; 1016 + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.40.0"; sha256="1r9kayp0hxcwls08lv2fh0cmf9ks0lqx3k31c1zn4asw4dyqpgva"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; 1017 + VariantExperiment = derive2 { name="VariantExperiment"; version="1.8.0"; sha256="0f9zm5jcdw4ziqaynm6kn73n2pislrgwa7lwqmwmkprzirckpkk5"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; 1018 + VariantFiltering = derive2 { name="VariantFiltering"; version="1.30.0"; sha256="15js8xzi9rsgkjkqcshzk3r3g85kdnxn5v2hi6l5s4yxj9lnq12p"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; 1019 + VariantTools = derive2 { name="VariantTools"; version="1.36.0"; sha256="0079dsgav4q03c4i0dhggc88iifd828n73kjv3sahim9akafdshl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 1020 + VegaMC = derive2 { name="VegaMC"; version="3.32.0"; sha256="19vjzy0a9jcndgyh9vfihlk6pbld28pf1px84km03xr3hrlsp1fm"; depends=[Biobase biomaRt]; }; 1021 + VennDetail = derive2 { name="VennDetail"; version="1.10.0"; sha256="16vhjfi8hyjs8x2s278j4dfjyhsc2jnh1s8h10ddkbrkynckdf20"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; 1022 + ViSEAGO = derive2 { name="ViSEAGO"; version="1.8.0"; sha256="0chb10y97j7kv00i4wbnkxyd7iwf28ybdnkd4ijsamf7ddl814hq"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; 1023 + VplotR = derive2 { name="VplotR"; version="1.4.0"; sha256="0ahf7nqxymx46w3rs8qq6jpvw41avzmssw7apnax13x9gn29kbg6"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; 1024 + Wrench = derive2 { name="Wrench"; version="1.12.0"; sha256="1vzv7sswijgb8nq58yrc19wlw2nnpjvans86fqqzs4p8wvq8j06n"; depends=[limma locfit matrixStats]; }; 1025 + XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; 1026 + XDE = derive2 { name="XDE"; version="2.40.0"; sha256="0f7liqy2gf6ka7wjj591yi8805m3nn21c440vz9iqsanszxnsi6q"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; 1027 + XINA = derive2 { name="XINA"; version="1.12.0"; sha256="14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; 1028 + XNAString = derive2 { name="XNAString"; version="1.2.0"; sha256="1rpcvn54a6s3iwmdg96rshilr1mqcb1nlbvzbyp5xi55km7iwm8i"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; 1029 + XVector = derive2 { name="XVector"; version="0.34.0"; sha256="07r4qgmnifw9jk2srjg0cvl310j0f9y35jrg0zqhlvhmyhg6n2c0"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; 1030 + Xeva = derive2 { name="Xeva"; version="1.10.0"; sha256="0c4ak66kl13gp18h1xahhfy9hhx0cpspncigdznjqpxwgrbs1qpf"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; 1031 + YAPSA = derive2 { name="YAPSA"; version="1.19.0"; sha256="0fgcbskz96p5815nywsnqv2gzn7g93m438hpd5rpg85srg4wrpdj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; }; 1032 + a4 = derive2 { name="a4"; version="1.42.0"; sha256="0mkgim93441zxhn4wmbin9ydl94srsawis0xwx479l0byj88n07m"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; 1033 + a4Base = derive2 { name="a4Base"; version="1.42.0"; sha256="0rddxnflvbc6z4sj2h8js8yfh0zhrrwj8fk00wicaqp4rkr5yaxy"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; 1034 + a4Classif = derive2 { name="a4Classif"; version="1.42.0"; sha256="0q50d41n7drj5c9x6njyvzr6bj7glmkp1vpyz6cpj97j2v9nikwb"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; 1035 + a4Core = derive2 { name="a4Core"; version="1.42.0"; sha256="074aa52y6c70417lxwrclk613gbs7zv3326g9ndbbzzs5pmnh1y0"; depends=[Biobase glmnet]; }; 1036 + a4Preproc = derive2 { name="a4Preproc"; version="1.42.0"; sha256="1qzr54w1qys1ppd71i5b57503dijfnnbn516a2mfk5l9l7wr728d"; depends=[Biobase BiocGenerics]; }; 1037 + a4Reporting = derive2 { name="a4Reporting"; version="1.42.0"; sha256="1vyah71gm4ngsgy0y10cdxa9b1g810gqa5pbvb3krh5i6h35smwr"; depends=[xtable]; }; 1038 + aCGH = derive2 { name="aCGH"; version="1.72.0"; sha256="1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"; depends=[Biobase cluster multtest survival]; }; 1039 + abseqR = derive2 { name="abseqR"; version="1.12.0"; sha256="1v9g71x689ly107c0qmc5iv8qk63nn6lp7yd03jf7hlcafmvqsvz"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; 1040 + acde = derive2 { name="acde"; version="1.24.0"; sha256="13ks87am73m3bjn9ljapxml2a9cxdpgv9flwvly8aqmi3ndxyqi6"; depends=[boot]; }; 1041 + adSplit = derive2 { name="adSplit"; version="1.64.0"; sha256="1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; 1042 + adductomicsR = derive2 { name="adductomicsR"; version="1.10.0"; sha256="0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; 1043 + affxparser = derive2 { name="affxparser"; version="1.66.0"; sha256="1bd0f8ifj6l7dx2m3wpmd0mji2gdf39mzgcjf9lbvvmbqnbxbcal"; depends=[]; }; 1044 + affy = derive2 { name="affy"; version="1.72.0"; sha256="0z66pyn2020h3x22xabkmnjxb20kbgblivvk7mqjk9134wvvf15a"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; 1045 + affyContam = derive2 { name="affyContam"; version="1.52.0"; sha256="1vw3nxg9jvlw0zg9h70w2ww8l42qpyvgf12hsla9hyyfhj3m6i9f"; depends=[affy affydata Biobase]; }; 1046 + affyILM = derive2 { name="affyILM"; version="1.46.0"; sha256="18rnqmpgbmjy4pvian6g7q8r0xm827wvksy7y3pmi9m7af1dgnvv"; depends=[affxparser affy Biobase gcrma]; }; 1047 + affyPLM = derive2 { name="affyPLM"; version="1.70.0"; sha256="0mwfhz36qiirifrrgc2fcac1w1a1pfdb2474mgw13xk6xjvvgsab"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; 1048 + affycomp = derive2 { name="affycomp"; version="1.70.0"; sha256="0kawlfff82ikrbrfyyy38zm5wj5xdri2ii9wgwilnq50z5qc6r21"; depends=[Biobase]; }; 1049 + affycoretools = derive2 { name="affycoretools"; version="1.66.0"; sha256="1ccyaj129ii9f47r41qsy34y6ck4wna55j8vz3v3hbldddn93f40"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; 1050 + affyio = derive2 { name="affyio"; version="1.64.0"; sha256="02lqdq8hcldkf9qbyhhllkm3smpqc51sn2d9gbkm74r96fx37lvm"; depends=[zlibbioc]; }; 1051 + affylmGUI = derive2 { name="affylmGUI"; version="1.68.0"; sha256="02fdivy8zh1vg8vxnhmf6hsn3kc6k5q115903kmzmf3zzvypyi57"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; 1052 + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.4.0"; sha256="1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; 1053 + agilp = derive2 { name="agilp"; version="3.26.0"; sha256="02cyc2y4v3y16zlrnax2c96b2qfxj6b2j37ps4g2gdqgas08n9xp"; depends=[]; }; 1054 + airpart = derive2 { name="airpart"; version="1.2.0"; sha256="0289r5kkgndrbv9m3h2wwvc3j2j0yc8shq4di0nxy8kxaqng2nqa"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; 1055 + alevinQC = derive2 { name="alevinQC"; version="1.10.0"; sha256="1nbwdx4531pm72rcmd5mmpy2bybil7vkwn4zibccqvwgyi8745ma"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; 1056 + alpine = derive2 { name="alpine"; version="1.20.0"; sha256="0ddnk23ncmbm636fqclmcav2j3xqz25h1magdjv2x79hjz1hkqcq"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; 1057 + alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; }; 1058 + altcdfenvs = derive2 { name="altcdfenvs"; version="2.56.0"; sha256="0awn93mcjrgim4rc5ayiy9x7zpdfrmvnxa33y68hjvghl5xqq57y"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; 1059 + amplican = derive2 { name="amplican"; version="1.16.0"; sha256="1p4n0bm4hsw20iyxghnc7k06q2w3hs044zsyl5ysd9xxiggi628l"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; 1060 + animalcules = derive2 { name="animalcules"; version="1.10.0"; sha256="0l7lyw1a51piq20lh49ss4c2i75lrs1xq532jgf65n8vkm8asc88"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; 1061 + annaffy = derive2 { name="annaffy"; version="1.66.0"; sha256="0crj37v571005brdd0ypfx2a7d1f829xxj2hahp2gy8aj9xm4s8l"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; 1062 + annmap = derive2 { name="annmap"; version="1.36.0"; sha256="0j8zvg3670dg0smyrdwsc42h64n4c6rm855zawlwgchx3vdgb8gn"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; 1063 + annotate = derive2 { name="annotate"; version="1.72.0"; sha256="0p7q5hdk7003q72vg4hrgdzn463spybxhrkvcq3a6l6jkgy9sf84"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; 1064 + annotationTools = derive2 { name="annotationTools"; version="1.68.0"; sha256="0grdswbf8nj0qwl0n5pqsir9242dry85j6m688j81gwwjgmzidvh"; depends=[Biobase]; }; 1065 + annotatr = derive2 { name="annotatr"; version="1.20.0"; sha256="1ha2wn56cdab4p3wdwv4xlqjsgl7sd8phbx71qbclrbdwpq2mi7i"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; 1066 + anota = derive2 { name="anota"; version="1.42.0"; sha256="0agvcpb3lr9v55h53ywf662gpxayivxacv8dcm526cc8i8hdqa9f"; depends=[multtest qvalue]; }; 1067 + anota2seq = derive2 { name="anota2seq"; version="1.16.0"; sha256="0h03rbjnl16mn521fvxcn3d7ik5l52klwpjx45rk8js0alg5z4xf"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; 1068 + antiProfiles = derive2 { name="antiProfiles"; version="1.34.0"; sha256="0h9jvb579vy8744mmhg5m7964f24pwm4v02fivxq0z06ccbm79dm"; depends=[locfit matrixStats]; }; 1069 + apComplex = derive2 { name="apComplex"; version="2.60.0"; sha256="09014csh7wic7hsjri45ply2fkg93gq7xp4ckaj0yr4invjrw3m3"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; 1070 + apeglm = derive2 { name="apeglm"; version="1.16.0"; sha256="11w4vyc1sllmm5lh42krhidazid78n4s3lhikpy9kk2l57jmifbr"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; 1071 + appreci8R = derive2 { name="appreci8R"; version="1.12.0"; sha256="10sxxsp1c3mmhf4pgqb71vpj3izy16dcm30gklw5axkv45lkpp7f"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; 1072 + aroma_light = derive2 { name="aroma.light"; version="3.24.0"; sha256="12qa85hsp8d1xhgn27iymknbhpnp9bd7hsgqxwvp1i8kki06z5hp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; 1073 + arrayMvout = derive2 { name="arrayMvout"; version="1.52.0"; sha256="180bdk6p1lmd24ihc90b8r6dgr0vgclassgzblnwd95ya68a25xq"; depends=[affy affyContam Biobase lumi mdqc parody]; }; 1074 + arrayQuality = derive2 { name="arrayQuality"; version="1.72.0"; sha256="1qlg9xb17sgxfbsnxqs48qzmxc5fhchv5sszxxafkjd0pbfzkllv"; depends=[gridBase hexbin limma marray RColorBrewer]; }; 1075 + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.50.0"; sha256="034xdnqvgwqy1wh17mmjzmhzj0iy8sdx4al0ngdxdfnxcjk4gfny"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; 1076 + artMS = derive2 { name="artMS"; version="1.12.0"; sha256="0gaxd759zv273jh15l5zifh7k995sx8yda097lhjafdph7jmf0nh"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; 1077 + atSNP = derive2 { name="atSNP"; version="1.10.0"; sha256="0yy731ivpcrmjwpljxzvlk7n2pygydw2q58gq90d1midch1nf0lx"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; 1078 + atena = derive2 { name="atena"; version="1.0.0"; sha256="132xp8cczvd7hznhdl1a7h410khahf8yqz3zr9gdyrni1viabxm9"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; 1079 + attract = derive2 { name="attract"; version="1.46.0"; sha256="1vh6wgi6wmjry25khzbq32s67jjn581zjhhfqbl7y2dkfq2fvybf"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; 1080 + autonomics = derive2 { name="autonomics"; version="1.2.0"; sha256="1j0nsbdw7sahy031bvp8pg8a1fg7ql0is65d0mfh8345lbmr29sn"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; 1081 + awst = derive2 { name="awst"; version="1.2.0"; sha256="0qxi4f7ngfsx17q9szhl95bhihcfx36bw4n175zyfdnac6cb9kap"; depends=[SummarizedExperiment]; }; 1082 + bacon = derive2 { name="bacon"; version="1.22.0"; sha256="13dhma34j9ggryainn4x6qvd3hphpxks5gf0mysia00r9hhpwwlc"; depends=[BiocParallel ellipse ggplot2]; }; 1083 + ballgown = derive2 { name="ballgown"; version="2.26.0"; sha256="0fiky82arvgzgxrm4bqn74m5kngqpdaqf6ks4cr89nlnhfq0v6rf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; 1084 + bambu = derive2 { name="bambu"; version="2.0.0"; sha256="1r0y3rzqhcasrshranh4nlbm2ahphzizy907xzka0kkkaz7g9zqr"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; 1085 + bamsignals = derive2 { name="bamsignals"; version="1.26.0"; sha256="03m3yaagplh7j4q5hp3cfcdqwsnh1pwrlla9cv3ajnfd83s8ncqv"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; 1086 + banocc = derive2 { name="banocc"; version="1.18.0"; sha256="0p5v601j1lkgh9prlvalp3xpqw87xq7ql0bak212443n15pfj3a4"; depends=[coda mvtnorm rstan stringr]; }; 1087 + barcodetrackR = derive2 { name="barcodetrackR"; version="1.2.0"; sha256="1z7sj2ykp34g9bf0x0s3qavrprbiaksgk5r4hsakb24jjbi65jnh"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; 1088 + basecallQC = derive2 { name="basecallQC"; version="1.18.0"; sha256="0nnrcjmmva6axnf3hqs8ga6sqwhfi5v27gdvqpdpc5h1sq4mx0vm"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; 1089 + basilisk = derive2 { name="basilisk"; version="1.6.0"; sha256="1cdkpngv9qybd9yxc3i2201p433vkkahs71v28x6lgs5l2wz3m1a"; depends=[basilisk_utils dir_expiry reticulate]; }; 1090 + basilisk_utils = derive2 { name="basilisk.utils"; version="1.6.0"; sha256="0578rq2yz24sv7anb7vp0a0y35944ag1l8ca6haanb03wl97wm99"; depends=[dir_expiry]; }; 1091 + batchelor = derive2 { name="batchelor"; version="1.10.0"; sha256="0axkic11bwjbw8apwxx6p51s7jvlwhq7xi1bdknn54k86axq84dr"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; 1092 + bayNorm = derive2 { name="bayNorm"; version="1.12.0"; sha256="1rxg42a7dl69xfzparz9mzyjbx966z7h5nl54392h29x224hmckv"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; 1093 + baySeq = derive2 { name="baySeq"; version="2.28.0"; sha256="1zgxwb287ccz4wqsjxmffknnzziv12l4yrw7df912dxz6yccvd8r"; depends=[abind edgeR GenomicRanges]; }; 1094 + bcSeq = derive2 { name="bcSeq"; version="1.16.0"; sha256="03zmnlg83lx94ialdps3bsyaip4nzj06xvx0lvppippp6w6zg0z1"; depends=[Biostrings Matrix Rcpp]; }; 1095 + beachmat = derive2 { name="beachmat"; version="2.10.0"; sha256="1l8c9q35mf90ckb366bcfqa0v2gw7ahs2h362j7cwv8fp39h4mpb"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; 1096 + beadarray = derive2 { name="beadarray"; version="2.44.0"; sha256="05m155air8a6s2awqmw4z6nfvm7zb58z4yp1967a1g1fygb3s9s2"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; 1097 + beadarraySNP = derive2 { name="beadarraySNP"; version="1.60.0"; sha256="0ypx3ag1i6g2zp75waag9nf0wawhx9k73yfbvx533kd9acplbrbq"; depends=[Biobase quantsmooth]; }; 1098 + benchdamic = derive2 { name="benchdamic"; version="1.0.0"; sha256="1qrxhfg4fwr4gcs3zycksxxzjg4mjzcgqazn6907i00pfh3yi2pr"; depends=[ALDEx2 BiocParallel corncob cowplot DESeq2 edgeR ffpe ggdendro ggplot2 limma MAST metagenomeSeq MGLM phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment zinbwave]; }; 1099 + bgx = derive2 { name="bgx"; version="1.60.0"; sha256="0z3isnpyf9s11807dprxmd105lb0k4l7r1sygad30ncjvpldifzm"; depends=[affy Biobase gcrma Rcpp]; }; 1100 + bigPint = derive2 { name="bigPint"; version="1.10.0"; sha256="0b0l0v9p7a5da3x18d0pqn41ilgxfyzapjaawgsshcfm5mjq5d7q"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; 1101 + bigmelon = derive2 { name="bigmelon"; version="1.20.0"; sha256="0ksbmybi8wsg515b4k9ij1xqqk9i90pyap2wq5w3c49qgc0pqali"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; 1102 + bioCancer = derive2 { name="bioCancer"; version="1.22.0"; sha256="1iv7gvixbkfg1igac99ix1a6ah90fc8hsf2062ynazc9nsx9wh3k"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; 1103 + bioDist = derive2 { name="bioDist"; version="1.66.0"; sha256="0y35c9sdq5x4q64ip0wgqz59mh01l71k1pp6n8vqbr667nwg0gdp"; depends=[Biobase KernSmooth]; }; 1104 + bioassayR = derive2 { name="bioassayR"; version="1.32.0"; sha256="1nfp1alva6qim5rbhg9j9w97p2n4z21ghr4j489lqklkcs4d030f"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; 1105 + biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; }; 1106 + biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; }; 1107 + biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; 1108 + biocViews = derive2 { name="biocViews"; version="1.62.0"; sha256="094npjhjv3ncd49fzzq1p8rv274r2h1h87la81sy1haf1dbppnh9"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; 1109 + biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; 1110 + biodb = derive2 { name="biodb"; version="1.2.0"; sha256="0q343zbx341xdy634p50k7bj6byv8v2rqzy50nw75a79206pajl4"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; 1111 + biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; 1112 + biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.0"; sha256="0ngg6gjpcbxs33lq7kwa2a7h88irdvk9z96lfi4gcsgp3rjp782x"; depends=[biodb R6 Rcpp testthat]; }; 1113 + biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; 1114 + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; 1115 + biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; 1116 + biomaRt = derive2 { name="biomaRt"; version="2.50.0"; sha256="069wqihm8pj3r41dizvdbj4jnw9bsc5jrz8czfrak5v69bgk5v5q"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; 1117 + biomformat = derive2 { name="biomformat"; version="1.22.0"; sha256="0xf99j4lhf8kh9h1317hrbzxdv6rljs1fn68r8s40x6y4db3l817"; depends=[jsonlite Matrix plyr rhdf5]; }; 1118 + biomvRCNS = derive2 { name="biomvRCNS"; version="1.34.0"; sha256="01nhjhfyzs67p97bk9bjqdxk239ckl8sgfj55azk1zmw92aw2hfy"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; 1119 + biosigner = derive2 { name="biosigner"; version="1.22.0"; sha256="189018qahyw33dmg73wa7k4rp8nzrx6ai8f2dr6vhbpcdc1gnm0z"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; 1120 + biotmle = derive2 { name="biotmle"; version="1.18.0"; sha256="0p3iavf9059qa8qvfvqzskfc5gki3z0ivkkqdwg5anvf0wv2k47g"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; 1121 + biovizBase = derive2 { name="biovizBase"; version="1.42.0"; sha256="0kg71p7sqfvxal0c19zrws1ffaqgyi8p605l3z6mkq5ldi26pajz"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 1122 + biscuiteer = derive2 { name="biscuiteer"; version="1.8.0"; sha256="16ds322b21g8ys5c3lkrvi70i82f9rxvnknbiqx4sp6f2l01j5yj"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 1123 + blacksheepr = derive2 { name="blacksheepr"; version="1.8.0"; sha256="0j623s9vjxknqx3p3d2nbwiqqjp1326bbyvqjm75n1iyj33z1844"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; 1124 + blima = derive2 { name="blima"; version="1.28.0"; sha256="0z7xny4v0cypy49a0g38aj0ryh0lzfp9bf0qbzd5kv1yip6n16xq"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; 1125 + bluster = derive2 { name="bluster"; version="1.4.0"; sha256="1j24l12i3aga4qd827sj8b160yvrhlznggb4piddkmhjc0sppbjm"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; 1126 + bnbc = derive2 { name="bnbc"; version="1.16.0"; sha256="0vvv0pdcmyibl6km1avf3nj25xvpsk5jpw6kg08nqm9jg4h0v57m"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; 1127 + bnem = derive2 { name="bnem"; version="1.2.0"; sha256="1pv9krjsa2siwbrlp6zlw2403mqdmarxfgc4m77fbz3j0y4gipgp"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; 1128 + brainflowprobes = derive2 { name="brainflowprobes"; version="1.8.0"; sha256="1y1lkr8klk9l22hmwqq3c9kkiyzy0mjp6fj63cb8zg653ib1sksw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; 1129 + branchpointer = derive2 { name="branchpointer"; version="1.20.0"; sha256="1rkfn8kdhkxq63n7llh3w7ydxdnzdbz7gd2f4bx7z9alp77lis1d"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; 1130 + breakpointR = derive2 { name="breakpointR"; version="1.12.0"; sha256="1c8kypcp5h6krsi1wbprslw7fivamjlcm02hfx5j5ni6skr0cs63"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; 1131 + brendaDb = derive2 { name="brendaDb"; version="1.8.0"; sha256="1yprf5hjzhfhzq71q8vzf45j0dakxbdr9rv166m0zs3nk5f75g3r"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; 1132 + bridge = derive2 { name="bridge"; version="1.58.0"; sha256="0qzniimw426vivslf0g99c508298cgwykhzrrjhnjc2bfan63iry"; depends=[rama]; }; 1133 + bsseq = derive2 { name="bsseq"; version="1.30.0"; sha256="1i30zf6457a0qd64s89x9l544y1h0hj9rfgf1m8l4krd487a9b9d"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; 1134 + bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.0"; sha256="04msihdxm52nhfy5zrd1wm92p8dss0zy5yb27rrcddflil77rgvc"; depends=[BiocFileCache vroom]; }; 1135 + bumphunter = derive2 { name="bumphunter"; version="1.36.0"; sha256="0d5cz9xy7vhcaj5n3h4cfiv08sn7wn83458525pdwvdzzm449xgv"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; 1136 + cBioPortalData = derive2 { name="cBioPortalData"; version="2.6.0"; sha256="0bapc4c9x328l0wrnm6zzq1byf1l33rza8xmadrfqfiq6j56qakq"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; 1137 + cTRAP = derive2 { name="cTRAP"; version="1.12.0"; sha256="13q0pyc6vvxl41hg8cz4rdqrq0vppnna5fw2cin58dm2mayhd6p9"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; 1138 + caOmicsV = derive2 { name="caOmicsV"; version="1.24.0"; sha256="0snr67g9bqwyvrr1gxmgdjhrybgcpl38dwik583752sgdyf84c6p"; depends=[bc3net igraph]; }; 1139 + cageminer = derive2 { name="cageminer"; version="1.0.0"; sha256="140w8ccm5j5kl3gyn6437a2zqlzf5277k3g3c9i22n1jkdp947yn"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; 1140 + calm = derive2 { name="calm"; version="1.8.0"; sha256="1sq78fv4s6ja9yw84k20zl10pbkk8g2kf38p6nbxkhi4rvz8b5r2"; depends=[mgcv]; }; 1141 + canceR = derive2 { name="canceR"; version="1.28.0"; sha256="1iii7r1dg4khplqacr1lncks7iqqvgzqfb5vd84bbw2cvc9dbl63"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; 1142 + cancerclass = derive2 { name="cancerclass"; version="1.38.0"; sha256="1kp764g9jms7r95wh58c4d1yli7xfvhfvi50x2s8rzi4bhi3zik6"; depends=[binom Biobase]; }; 1143 + casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; 1144 + categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; 1145 + cbaf = derive2 { name="cbaf"; version="1.16.0"; sha256="1xdl06arh5kwnp8159kbcrhlc19zlwk1srzk634jzp8pch9086da"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; 1146 + cbpManager = derive2 { name="cbpManager"; version="1.2.0"; sha256="12jw5pw10dhkmbljphrzc9g2jn5fd6wz5vn0ixmvndyq09yl9aw3"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; 1147 + ccfindR = derive2 { name="ccfindR"; version="1.14.0"; sha256="00xaspkckhnflkaj0wfs06kbz6y6cfshr1mq4zhh7yszppgqflzd"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1148 + ccmap = derive2 { name="ccmap"; version="1.20.0"; sha256="1z5lyv7m55wcncjlrqzflmp1jm2580k1pvajj3gjqif8kx477q3d"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; 1149 + ccrepe = derive2 { name="ccrepe"; version="1.30.0"; sha256="05wazs9bv4nlkzb3r98v31w0vpkv4071f9zw9dlh9jd8cm91ppk1"; depends=[infotheo]; }; 1150 + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.6.0"; sha256="126wkhzj2f5b691jc34a6cqn2rznv531gg1cqfqs4j7k47hfy0in"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; 1151 + celaref = derive2 { name="celaref"; version="1.12.0"; sha256="0rxcy7sw1l2r8j1sralvqwl7ml2hf6x74qmfam87s6gal021z6qj"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; 1152 + celda = derive2 { name="celda"; version="1.10.0"; sha256="1qlkkh1h6pjv6rjk5p50iq1dhzn1l6sqnm61y6jlg1hqkdc76wbb"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; 1153 + cellHTS2 = derive2 { name="cellHTS2"; version="2.58.0"; sha256="0h5vif8xi7axfh41mmp0b8zm1r07mnlnqq6bp0fkwqyas7gbzahh"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; 1154 + cellTree = derive2 { name="cellTree"; version="1.24.0"; sha256="1jdspwhimzj2bdjip6jbmqdyxsj8grr7nd6h31b3abs3sk19khy8"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; 1155 + cellbaseR = derive2 { name="cellbaseR"; version="1.18.0"; sha256="1hsm3yd8zjzym2xh6isikvm5nx3jvfsbq6m34x3i3ash8hgg9022"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; 1156 + cellity = derive2 { name="cellity"; version="1.22.0"; sha256="18nivw8c2iv6ibp6hj2m0f04qb28dcq3ya1imfwsvanm9qb2z8zr"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; 1157 + cellmigRation = derive2 { name="cellmigRation"; version="1.2.0"; sha256="0wwfp4jffdxjhzpjpa9136i7ji7bkgbmkdrc4k058kwncv65iajp"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; 1158 + cellscape = derive2 { name="cellscape"; version="1.18.0"; sha256="1p8ib244yxfzl5xswl1ifhj7grc8435npw82kmj5vqg8mqbkhgh7"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; 1159 + censcyt = derive2 { name="censcyt"; version="1.2.0"; sha256="0yrkv3122iniqgfsp8hhglndpklhlvr2d1f661ghn73dhwbabmww"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; 1160 + cfDNAPro = derive2 { name="cfDNAPro"; version="1.0.0"; sha256="0klzwax2wblcq8j51ig7qkxml7yb3qc2p66g2ds8sfai0y3hslf9"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; 1161 + cghMCR = derive2 { name="cghMCR"; version="1.52.0"; sha256="1j3pdj1c5wpl0mmirbssysval6fh2vyfb4d6w6jkqikchbcal8pk"; depends=[BiocGenerics CNTools DNAcopy limma]; }; 1162 + chimeraviz = derive2 { name="chimeraviz"; version="1.20.0"; sha256="0gsd2bwjzh6f8gqclnhm8gq2q3c1ddp4qqflmbgfk16jja8516va"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; 1163 + chipenrich = derive2 { name="chipenrich"; version="2.18.0"; sha256="1nyb79hw5k15vs2vxcfc13ypvqz01khsva56yalcnkb8y2am4gyn"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; 1164 + chipseq = derive2 { name="chipseq"; version="1.44.0"; sha256="1jw209bfh1c22mqs9z44qx3pmca9m68rhxp0p9bvbmqsnqwrndi6"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; 1165 + chopsticks = derive2 { name="chopsticks"; version="1.60.0"; sha256="08v9kkqx3ylhcrj00s909v8ij0mskphd7pi1m7kixs90bisvhhw7"; depends=[survival]; }; 1166 + chromDraw = derive2 { name="chromDraw"; version="2.24.0"; sha256="11vvk3m2av7dffwlbg74xlk5f50r1b6fijv820875b7sxhfhxy7x"; depends=[GenomicRanges Rcpp]; }; 1167 + chromPlot = derive2 { name="chromPlot"; version="1.22.0"; sha256="190h1906007wm14y0ra1nnanacig0yrhcpmnpbanzl68gmjhvalh"; depends=[biomaRt GenomicRanges]; }; 1168 + chromVAR = derive2 { name="chromVAR"; version="1.16.0"; sha256="0ylsfr540l763bh010irbcavlskahyb1769pppimdgn22gyr3spk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; 1169 + chromstaR = derive2 { name="chromstaR"; version="1.19.0"; sha256="0z511l26fhz00qn8h2yybylk8c3ws8hj1hp8hq9qj9mfczwiqy3j"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; 1170 + chromswitch = derive2 { name="chromswitch"; version="1.16.0"; sha256="0mb26jhrkd99akrfsnx5ziszmwv3ydc6sp140s1wh6jwn6qjws73"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; 1171 + cicero = derive2 { name="cicero"; version="1.12.0"; sha256="1fc69nkm2cwpr6gkfmra2ph0lrmw486chswp4pn8i70ia43fzdm7"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; 1172 + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.8.0"; sha256="0l83r9idhrha1m21vpnw917m5dlldji49zvx4d25m5g3ia1pkhpf"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; 1173 + cisPath = derive2 { name="cisPath"; version="1.34.0"; sha256="1gr3p89zb454rkvjikfpsqrhiyn7lymfni6m8jwwlv3yxfk80n2z"; depends=[]; }; 1174 + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.32.0"; sha256="0rcfnqdcvw5na1x27iyp8zkzv3x219j8j8k13kkchv1z43q0a9zp"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr stringr]; }; 1175 + cleaver = derive2 { name="cleaver"; version="1.32.0"; sha256="0r2n787qws638h3cclhl1idfvqm64640s9xi6g85269hzx4cfgf0"; depends=[Biostrings IRanges S4Vectors]; }; 1176 + cliProfiler = derive2 { name="cliProfiler"; version="1.0.0"; sha256="1hkq0dyd2d9v3f0567n3jy66xaj0gzg0ig2hdj8g5dbbxbspbr3r"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; 1177 + clippda = derive2 { name="clippda"; version="1.44.0"; sha256="1c0hjj1lcnyrwwvkb2s0g3dm2sgfr35sbxkfiqhnylrqq9akpi2y"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; 1178 + clipper = derive2 { name="clipper"; version="1.34.0"; sha256="0110jdpc24fnj2wb3zmvihsfkyk9d0lv3bm7bcf3nlyj3h7ibkwn"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; 1179 + cliqueMS = derive2 { name="cliqueMS"; version="1.8.0"; sha256="1r5appv1k73pngsawfah25wvj8xkyrzr63f7iq7hzdin6d7yxp54"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; 1180 + clonotypeR = derive2 { name="clonotypeR"; version="1.32.1"; sha256="1fxhv3g7hz4yihrwcr0gb8z2n48al5jx9ilb82rwy67f82g5f3af"; depends=[]; }; 1181 + clst = derive2 { name="clst"; version="1.42.0"; sha256="1da3mw445bv9mr59wpnjw2zk0avrbrwannrc5jmwxd4sdiy33f2r"; depends=[lattice ROC]; }; 1182 + clstutils = derive2 { name="clstutils"; version="1.42.0"; sha256="0zbyppajhkzims3cb631ylfl132a07b1w91kp3ba6hg4f7zxw06q"; depends=[ape clst lattice rjson RSQLite]; }; 1183 + clustComp = derive2 { name="clustComp"; version="1.22.0"; sha256="0n1qpjxffx8jm8m3gw891irpzagpi91r46xa6iznsskh8nhmh44y"; depends=[sm]; }; 1184 + clusterExperiment = derive2 { name="clusterExperiment"; version="2.14.0"; sha256="0riray1f841d5fx6mbcki5xmqz21kg5q5l0qz4pkgg9c1d9f7mbc"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; 1185 + clusterProfiler = derive2 { name="clusterProfiler"; version="4.2.0"; sha256="18y7482sw0awlhazikq13r2r0zid9ksk942rma87m448y1cq2fi5"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; 1186 + clusterSeq = derive2 { name="clusterSeq"; version="1.18.0"; sha256="1qyycc8wrik54bc2rvzisv6p05jnh1kf68jafqgw9lqpp5gk40bl"; depends=[baySeq BiocGenerics BiocParallel]; }; 1187 + clusterStab = derive2 { name="clusterStab"; version="1.66.0"; sha256="1863jpdwx27snpil38waj3zr0w2m0q7xj8g1zm8c5cbx9as1cwkd"; depends=[Biobase]; }; 1188 + clustifyr = derive2 { name="clustifyr"; version="1.5.1"; sha256="0qrbfb04lfj72f7nv001p92a6q8j9ymh24b3c4gfg8pm4dw7m344"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; 1189 + cmapR = derive2 { name="cmapR"; version="1.6.0"; sha256="0zk96k6z80zkd4q6s4fcn21vmz6y17bfa1sqllvyn3zy237gj132"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; 1190 + cn_farms = derive2 { name="cn.farms"; version="1.42.0"; sha256="062rp52r1wv5wiqjvp0rsjfzqyjgh4v73iir77ivmmimsydv38lm"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; 1191 + cn_mops = derive2 { name="cn.mops"; version="1.40.0"; sha256="1ibmm87x0wi93ss1p2vmaxwa1xncqx63q42zf7fppmmdgfn4rcvg"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; 1192 + cnvGSA = derive2 { name="cnvGSA"; version="1.38.0"; sha256="0gnpdbnj3wi9jbi0bkz0kiynl9dc0p1vg26xv8xq3cqpb3ppjnqd"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; 1193 + coGPS = derive2 { name="coGPS"; version="1.38.0"; sha256="0qjsz8n791x10w1a6p68cdp3ch4c1v45b8pfvx774jjh52i9v6qp"; depends=[]; }; 1194 + coMET = derive2 { name="coMET"; version="1.26.0"; sha256="0n4fhhx27qrqs855qjx6ng7xdgcxlv3krj5sy4sxrhsahslad9v4"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; 1195 + coRdon = derive2 { name="coRdon"; version="1.12.0"; sha256="1m5k0cp61x50izgpb748h8dh2ab98i3vlsf63lhcvhvirind96fw"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; 1196 + codelink = derive2 { name="codelink"; version="1.62.0"; sha256="13ydy59qk5walsifyl8gfd181wbkf1jam3242407fsskw5ia4kfv"; depends=[annotate Biobase BiocGenerics limma]; }; 1197 + coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; 1198 + cogena = derive2 { name="cogena"; version="1.28.0"; sha256="077cmcsqvc2d26ywm6537l538pnn9473sh3q0z91zvmw0886iava"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; 1199 + cola = derive2 { name="cola"; version="2.0.0"; sha256="13ibslqhqa0xgg79n3cbgpmzlhf9nhibn4wm4mdcyxarxlqlqrsh"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; 1200 + combi = derive2 { name="combi"; version="1.6.0"; sha256="0wca0wjmyr0jfy366b2xqfk56qd1y2s43ccbnhbzmvaj7hafnnbc"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; 1201 + compEpiTools = derive2 { name="compEpiTools"; version="1.27.0"; sha256="0hk3yd7ql91wg9r24r57ybhs1nx6zbd5v199sv7xd91k980n2ay5"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; 1202 + compartmap = derive2 { name="compartmap"; version="1.12.0"; sha256="0dhkrskw1hb2vxq3dkxl6ccf0mxpydszpd7d6lpqrk2x62i7hhk5"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; 1203 + compcodeR = derive2 { name="compcodeR"; version="1.30.0"; sha256="0793wkv967w5sicg4spx1mw48pgn18rwb7wkcqc98sc7d0fvi1vb"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; 1204 + conclus = derive2 { name="conclus"; version="1.2.0"; sha256="1c4n4ybm0ppd83ydhxghs5kv93djqxin0ppkg4n6rbjw7m9qx1p2"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; 1205 + condiments = derive2 { name="condiments"; version="1.2.0"; sha256="00328ql84ry1fnfdmjn46f5q4ifbr8bbgrmvbdg6mvcmy27sqgab"; depends=[BiocParallel dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; 1206 + consensus = derive2 { name="consensus"; version="1.12.0"; sha256="1jxmxvw5wak9arj5b986k44h7xx1wiwdqn0lvkik47yzim53bclc"; depends=[gplots matrixStats RColorBrewer]; }; 1207 + consensusDE = derive2 { name="consensusDE"; version="1.12.0"; sha256="032qb4ni2q4k2ja8bjgqdgccrcccnjsl0lfiykizzbpma52k3knw"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; 1208 + consensusOV = derive2 { name="consensusOV"; version="1.16.0"; sha256="0rgk2674pbwxiqhj75yl283inr7bdhi9ndy48nm4553x6gv8bv20"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; 1209 + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.22.0"; sha256="1ckq96jw2g7zc2xwpi83qdik0d63qf8jrn24cx6pmm5zpnrcpv2i"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; 1210 + contiBAIT = derive2 { name="contiBAIT"; version="1.22.0"; sha256="19pbn2yr0fry9z8n153xjnz9d5m82mvyad67ys6zn566474ygjfa"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; 1211 + conumee = derive2 { name="conumee"; version="1.28.0"; sha256="0f7lji7880kqw4y24w7nwz3cd6pky3pk37mkwy8frb44zlyqzf2j"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; 1212 + convert = derive2 { name="convert"; version="1.70.0"; sha256="0ylqsj754ykr72xwc27gary3wxvrnl9ahflcnrnsg59fzlpr5i5w"; depends=[Biobase limma marray]; }; 1213 + copa = derive2 { name="copa"; version="1.62.0"; sha256="062ljzp597xr0lh8wniq0h6hzim0741slf6xg196agcjn2q3bs7d"; depends=[Biobase]; }; 1214 + copynumber = derive2 { name="copynumber"; version="1.34.0"; sha256="143ifvjkjz0392drm82xmpj1f8b5pc2dyyxyc9dkqmay8lf1n534"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; 1215 + corral = derive2 { name="corral"; version="1.4.0"; sha256="1mmiwqjqgm53x0ginv3gqxz0wf08yv70p9m0flarx9n6k3ri3bwb"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals SingleCellExperiment SummarizedExperiment transport]; }; 1216 + coseq = derive2 { name="coseq"; version="1.18.0"; sha256="0g3bningjbnjys7ksdxx68lnp7qfg2fwpp2m82s61rpyb06j5v4r"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; 1217 + cosmiq = derive2 { name="cosmiq"; version="1.28.0"; sha256="0b0d7d7fdf0rgkrpp92n6k1vkxswm63p1qmqb3b2c0nwpj68ybph"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; 1218 + cosmosR = derive2 { name="cosmosR"; version="1.2.0"; sha256="0y1a3yr23zbyg0b7yl7rbbfn930g72fpw8dz6vcfz73yjj6psxv1"; depends=[AnnotationDbi biomaRt CARNIVAL dorothea dplyr ggplot2 GSEABase igraph magrittr org_Hs_eg_db plyr purrr readr rlang scales stringr tibble visNetwork]; }; 1219 + countsimQC = derive2 { name="countsimQC"; version="1.12.0"; sha256="0ldjav5wsj1shjiyxi0mh3yxhmpwgwfvp9ijml6jii60hnbkrqck"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; 1220 + covEB = derive2 { name="covEB"; version="1.20.0"; sha256="0r0b1hih0wijcpn2xxjq56z185a5ij3l49g6wxbp5kcd7w5apmhp"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; 1221 + covRNA = derive2 { name="covRNA"; version="1.20.0"; sha256="16d5pdq2zhymxpv1xx66bb8kn037559mbp3lrcmhddy46xb519cv"; depends=[ade4 Biobase genefilter]; }; 1222 + cpvSNP = derive2 { name="cpvSNP"; version="1.26.0"; sha256="1z3lzj2izqmy1m8y73za4pfk158rfxbs8janvq776aqzcaa5pf0k"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; 1223 + cqn = derive2 { name="cqn"; version="1.40.0"; sha256="0bipwwscnifnwkgqayjg2pc2c50vykrfnyxxgxjbadlpaqar324a"; depends=[mclust nor1mix preprocessCore quantreg]; }; 1224 + crisprseekplus = derive2 { name="crisprseekplus"; version="1.20.0"; sha256="0bmx17mwl7w5fchgszbm5vh9ivnq5c6jvaz21srfnpxfcw5mpfji"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; 1225 + crlmm = derive2 { name="crlmm"; version="1.52.0"; sha256="1nrfr4kkfh7fab8v6w70dxdlxhfpkrfxz6px95wmrjlqpkp6acdb"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; 1226 + crossmeta = derive2 { name="crossmeta"; version="1.20.0"; sha256="1xfxjis5rl4mzlyzqsw9wjn75gd33i1f9658vy7vzs0grkjhx2m4"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DESeq2 DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RColorBrewer RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets statmod stringr SummarizedExperiment sva tibble XML]; }; 1227 + csaw = derive2 { name="csaw"; version="1.28.0"; sha256="0vwrwkwc30gb5x17sl1vkphf0qn6ib6387q9r3axqcyj1swf2wzq"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; 1228 + csdR = derive2 { name="csdR"; version="1.0.0"; sha256="1qgzpg14acag2rnr5606672lzxfipi5xqr3jcjl9bhmsq4g1mcqh"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; 1229 + ctc = derive2 { name="ctc"; version="1.68.0"; sha256="1yq5igwzcwfhxy49qf3pralpikiqq7sqr1cig8mkpjpaj5bbaayx"; depends=[amap]; }; 1230 + ctgGEM = derive2 { name="ctgGEM"; version="1.6.0"; sha256="03ba8vqxlxf8j1ifiz4ak3fjdjq1y11zw561j7knp37l8r8zy852"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; 1231 + ctsGE = derive2 { name="ctsGE"; version="1.20.0"; sha256="1hyy1mc72qmkv3gc80jrz3crj0yc2cig5bl91vhbxgn2a0wrxs3a"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; 1232 + cummeRbund = derive2 { name="cummeRbund"; version="2.36.0"; sha256="0130hrlz2jabbshis1g11ndda8b8vlirzi7a004li3cgdghscxql"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; 1233 + customCMPdb = derive2 { name="customCMPdb"; version="1.4.0"; sha256="0g8q63byqydppbcmbkm9n9pbl55k3mkfzdcipvypnyxz2fl2r0aj"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; 1234 + customProDB = derive2 { name="customProDB"; version="1.34.0"; sha256="08q6cmxkqlhk1v8xmya4afnhsxgki8qk15xwmsa465kdgz0pcr5c"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; 1235 + cyanoFilter = derive2 { name="cyanoFilter"; version="1.2.0"; sha256="011xx93clmz9g9mb9grm3g6kplx5lf11aww0a9k6z970gx528hd0"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; 1236 + cycle = derive2 { name="cycle"; version="1.48.0"; sha256="1zcxvf41ick80pi929vabbs632dml2rcxwjzz5z5pvz9ppm70vab"; depends=[Biobase Mfuzz]; }; 1237 + cydar = derive2 { name="cydar"; version="1.18.0"; sha256="0wsfcwfsm7lf6q13cgcwg189zjabdxnlaqbdb6gh1pk27mh3s70g"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; 1238 + cytoKernel = derive2 { name="cytoKernel"; version="1.0.0"; sha256="1n48bz8ainax53m6d5i5zyjlja3v5nv9vhx45r5746sr9rppbljw"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; 1239 + cytolib = derive2 { name="cytolib"; version="2.6.0"; sha256="01r5dfjil1i526kb5gj9c8x9agi90x0bh7lzykbpn0g6s2hznbzi"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; 1240 + cytomapper = derive2 { name="cytomapper"; version="1.6.0"; sha256="0vmklch5g82pbhpax2flizglyndhs1dmdq015wclj0a9wyflzn6d"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; 1241 + dStruct = derive2 { name="dStruct"; version="1.0.0"; sha256="0sy05n0zgd9d8jm352drw7xbcd37ghxzq7fwc3icm8hgqfx43qyk"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; 1242 + daMA = derive2 { name="daMA"; version="1.66.0"; sha256="0m7192md5956mbklw0j7z0b82inr6h0p2c9vvjsmd5ivlbz1zdri"; depends=[MASS]; }; 1243 + dada2 = derive2 { name="dada2"; version="1.22.0"; sha256="1mj2fiqanr8lp1883bali00la38d9g1krqz9v7f396s1f5x8yll6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; 1244 + dagLogo = derive2 { name="dagLogo"; version="1.32.0"; sha256="1gqb56zg11cl7ldww15zmn09f1f5i60mshwrv7gsb3yc79zs48s1"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; 1245 + dasper = derive2 { name="dasper"; version="1.4.0"; sha256="02gfagylbmpylq0cszppyxindiw3swm5n36cnfc9w08jfyisz571"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; 1246 + dcGSA = derive2 { name="dcGSA"; version="1.22.0"; sha256="0j697q02zys9brmc7xn1yh7lir7k1m7hlr752ykydqx9qzzw0m77"; depends=[BiocParallel Matrix]; }; 1247 + dcanr = derive2 { name="dcanr"; version="1.10.0"; sha256="0xrfdwcs4qxgasm318nd2cdqmr9ksaxig1frs8h6a7lg8wvh5f2x"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; 1248 + dce = derive2 { name="dce"; version="1.2.0"; sha256="0wzi9hv975ib7nvd6qqnlhzfzgx9wydxxs1pkklzzgwlwm4gr971"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; 1249 + ddCt = derive2 { name="ddCt"; version="1.50.0"; sha256="1qzgahnn9q4dmixhhaal1jv5p5jb5vm0hark1npvv3ya2jqpndp4"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; 1250 + ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; 1251 + dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; 1252 + debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; 1253 + debrowser = derive2 { name="debrowser"; version="1.22.0"; sha256="0d0sy72hyl2jbkfn4fh18yp51hh6qz30yk7iacz69y59c5rcqn8s"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; 1254 + deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; 1255 + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; 1256 + decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; 1257 + deconvR = derive2 { name="deconvR"; version="1.0.1"; sha256="1ibp59d0q8bax7rphg140jb5ylkhmaa4lmc0khqffq440j9fnrr5"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; 1258 + decoupleR = derive2 { name="decoupleR"; version="2.0.0"; sha256="0a9jxhfa2qfafvc35vqky8dfqhpl5vw6zmm1q5gq26bc58pswqar"; depends=[AUCell broom dplyr fgsea GSVA magrittr Matrix purrr ranger rlang RobustRankAggreg rpart speedglm stringr SummarizedExperiment tibble tidyr tidyselect viper withr]; }; 1259 + deepSNV = derive2 { name="deepSNV"; version="1.40.0"; sha256="1wi6j6yb6i9fs9yszfywqz3w50mhl85dkfmr4w3phwvkf0xkn81w"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; 1260 + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.8.0"; sha256="1gfh788xxamsf919bznwl1n5ycd81bcxw4mxcsib46fqmzxgh7vh"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; 1261 + deltaGseg = derive2 { name="deltaGseg"; version="1.34.0"; sha256="090bkkd0sxkjxnparn7jyi59rk18vd3nid2sw66malvc4zx0b22y"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; 1262 + densvis = derive2 { name="densvis"; version="1.4.0"; sha256="0h4j307zw0hxpi8fpm86x3l6nq514y94gvn3qyc5hp6b521f4frd"; depends=[assertthat basilisk Rcpp reticulate]; }; 1263 + derfinder = derive2 { name="derfinder"; version="1.28.0"; sha256="1hxf40ijrlmyrv3rprv5wx3am2vraplbsfg77kk9qd3gjq6q3ylp"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; 1264 + derfinderHelper = derive2 { name="derfinderHelper"; version="1.28.0"; sha256="06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"; depends=[IRanges Matrix S4Vectors]; }; 1265 + derfinderPlot = derive2 { name="derfinderPlot"; version="1.27.1"; sha256="0k074mh4rrm3lrrvbp95ss46ax7sbm1igfr5qpz7qdr0savgw5ki"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; 1266 + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.76.0"; sha256="1aprngqc2aqdw91q9c57y15xpkm4da4czf8ki55vnyngb9nlpabp"; depends=[minpack_lm]; }; 1267 + diffHic = derive2 { name="diffHic"; version="1.26.0"; sha256="0xhm6jgalgb2v8k99k1z99rwhcaqjhhklm5ih8b6ayfmgmf6x7ih"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; 1268 + diffUTR = derive2 { name="diffUTR"; version="1.2.0"; sha256="0lmsbaaqzzvk25bxjb8ngvx0l5aqsmk7nng5kv4nghm7y7ipp1gf"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; 1269 + diffcoexp = derive2 { name="diffcoexp"; version="1.14.0"; sha256="0j32si3bn47qabvzgzvc3a081r0ia1k2r3h4i4wh0gmz4yh29l4a"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; 1270 + diffcyt = derive2 { name="diffcyt"; version="1.14.0"; sha256="1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; 1271 + diffloop = derive2 { name="diffloop"; version="1.22.0"; sha256="1i2ri1cxsqwqc6fhnbkvdwqbgyfd407wn0qidq7nrqcamli8acvs"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; 1272 + diffuStats = derive2 { name="diffuStats"; version="1.14.0"; sha256="014bk8fg3yhkrwass4zm5bisdf2m7mdcriykpzybzpgfy66d7mls"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; 1273 + diggit = derive2 { name="diggit"; version="1.26.0"; sha256="19phk2qdc5a6r1g9awjm1icnq96sj3nd8m2cylr3d3qamkxvdhyy"; depends=[Biobase ks viper]; }; 1274 + dir_expiry = derive2 { name="dir.expiry"; version="1.2.0"; sha256="1bwmlxmizhmim2l0mk406hxfr5mnmsg5zbqkjyygaipa971m9s00"; depends=[filelock]; }; 1275 + discordant = derive2 { name="discordant"; version="1.18.0"; sha256="0r536qgd8v85rnzk1x3x85fnrs8wc6nm4dp25h7n6bj3j6mw6fjm"; depends=[Biobase biwt gtools MASS]; }; 1276 + distinct = derive2 { name="distinct"; version="1.6.0"; sha256="029wp2ag67w6d2pc9wzj3kjznfvc4y9rs4vcj54ncv6sd78il1kn"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; 1277 + dittoSeq = derive2 { name="dittoSeq"; version="1.6.0"; sha256="1rn92msi1py9fvvsspdzpik86a97jy0v8k2z4bnnzsvq9kijq1y1"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1278 + divergence = derive2 { name="divergence"; version="1.10.0"; sha256="11hn5j4frsd23fyvn3i0qp2n4nzlv0vjmlj0npmg9nf0xb5cpwrc"; depends=[SummarizedExperiment]; }; 1279 + dks = derive2 { name="dks"; version="1.40.0"; sha256="0vny28hbrxfh1rblkz6w02knx8sr6yv2hsdxj0idw02aamxxi3m8"; depends=[cubature]; }; 1280 + dmrseq = derive2 { name="dmrseq"; version="1.14.0"; sha256="1d6y6rbvcgprmzqkdzxg5csf0yv845d9vw10pcd1pzyndrama1vd"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; 1281 + doppelgangR = derive2 { name="doppelgangR"; version="1.22.0"; sha256="18n6gap62xwphwg8yldvh3k5xz56917w007k804610dpd8gl7ijm"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; 1282 + doseR = derive2 { name="doseR"; version="1.10.0"; sha256="0lwvmsirvpkli543q9k02hf2ra7hny7rljkmn0jiwd47j642fqhr"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; 1283 + dpeak = derive2 { name="dpeak"; version="1.6.0"; sha256="12a1zz8zj0kp2iprnckij98illb9jf2lg4nz144wjlfwiv3mq0y6"; depends=[BSgenome IRanges MASS Rcpp]; }; 1284 + drawProteins = derive2 { name="drawProteins"; version="1.14.0"; sha256="1imsisl2bwzf3dzhslmlqm6zwzil8a2l8kk7fkkc0dqka63kcwai"; depends=[dplyr ggplot2 httr readr tidyr]; }; 1285 + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.2.0"; sha256="1jcmkh1rjhk862f6kzqfw9zkk795yiwxq57bxbsqf9kwyykgwq7y"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; 1286 + dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; }; 1287 + dupRadar = derive2 { name="dupRadar"; version="1.24.0"; sha256="06s3661vlsy4n9p59wb8f9gmmwd2kwz0z2ydq2diix0hajz8h5fi"; depends=[Rsubread]; }; 1288 + dyebias = derive2 { name="dyebias"; version="1.54.0"; sha256="0iha3n4p01gphsp5jn5ypm9b8mfn2dlz1sdz179i5cmycwgg6p7s"; depends=[Biobase marray]; }; 1289 + easier = derive2 { name="easier"; version="1.0.0"; sha256="1wlpmx9ghbz9ikmw70b0lhsvkbcry5rmrkq8kxm0439wwwfd0ayj"; depends=[arules BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; 1290 + easyRNASeq = derive2 { name="easyRNASeq"; version="2.30.0"; sha256="01i0698nvwr4qpbi5fff89lrw5wr3xkaa478wnxj81k86sfcr59k"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; 1291 + easyreporting = derive2 { name="easyreporting"; version="1.6.0"; sha256="1ds7s0jb8xwfg7469k9n1v6fpx7mvln91a2fih8s70kgiz5kal6d"; depends=[rlang rmarkdown shiny]; }; 1292 + ecolitk = derive2 { name="ecolitk"; version="1.66.0"; sha256="0381xd6d6lkv9b0svsmxw1x32xygnj43al8dak1sqfyy74d8xdn1"; depends=[Biobase]; }; 1293 + edge = derive2 { name="edge"; version="2.26.0"; sha256="00cjg9nf4aqdw3p2wp16jyi9n0q3vh7fyyx1lpa5vx4qwlj96y2i"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; 1294 + edgeR = derive2 { name="edgeR"; version="3.36.0"; sha256="1d18kdfi9vjhhw5kwfy5airrd3c16fh4wbwppbhwgawm038mwavk"; depends=[limma locfit Rcpp]; }; 1295 + eegc = derive2 { name="eegc"; version="1.20.0"; sha256="0x35z9nwylb3jq56w31z9zb2q6b52fqk0sb70l3axqamb8yym0lc"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; 1296 + eiR = derive2 { name="eiR"; version="1.34.0"; sha256="1dppl1x5s0apz7djdi3qzdv8i0q7iqh6q9dcxx1g0hfn2v945jfn"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; 1297 + eisaR = derive2 { name="eisaR"; version="1.6.0"; sha256="1gfcmxdbzpb8rfdk7c1y7jhqanipa6jyxy2cg6f9jsp9x73fs61w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; 1298 + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.0"; sha256="1v8zgp33kabf5qjf7aklb1lbzsvlh1jv30g0f79djf2i9khcxlkm"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; 1299 + enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; 1300 + enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; 1301 + ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; 1302 + ensembldb = derive2 { name="ensembldb"; version="2.18.0"; sha256="02rdbqp33g488w1df1rgp0dg63qrr6w2kmgigxzc8l9wmrvj0y1j"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; 1303 + epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; 1304 + epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; 1305 + epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; 1306 + epigenomix = derive2 { name="epigenomix"; version="1.34.0"; sha256="0yyxm97cqyy9r6bxsw40dl8nh2f1lxw41w3i3av8lixp72wxy3ml"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; 1307 + epigraHMM = derive2 { name="epigraHMM"; version="1.2.0"; sha256="1m65d0dlp2lyrg1wh3c9wdcbd5p8pmm3w3z1x5hwcdj5ls9qfan5"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; 1308 + epihet = derive2 { name="epihet"; version="1.10.0"; sha256="086x87yzjmg0l95kd0mdxysqgdj7bmc4mr95h6mkyv70nsdfyfs4"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; 1309 + epistack = derive2 { name="epistack"; version="1.0.0"; sha256="0g5v30v7afx5wppg1fxpqba0inn6k25ljy7x3fim6vcwdhdnl95n"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors viridisLite]; }; 1310 + epivizr = derive2 { name="epivizr"; version="2.24.0"; sha256="1xxs34580gm2l222qf9m63id8282n2vg41s8ng6mrrd239pxpv2f"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 1311 + epivizrChart = derive2 { name="epivizrChart"; version="1.16.0"; sha256="1w3pxwwgl28v62sc7vrq1nqkj68mkj213bi3ccfxhl54b9aa8vnb"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; 1312 + epivizrData = derive2 { name="epivizrData"; version="1.22.0"; sha256="0zmn7fdbrnc96jrdk5wb2fnjip9x0i284w3g77lqi8jqjv9y4bm5"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; 1313 + epivizrServer = derive2 { name="epivizrServer"; version="1.22.0"; sha256="1amv6jj0k66k26hznqbff9hmf534sl8bhdiww4ny6szcmpl04jcq"; depends=[httpuv mime R6 rjson]; }; 1314 + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.22.0"; sha256="1a20fma8iybbd4mgxx5wyhlnraxzxxmgrv40jm55a59g1q8rbqa9"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; 1315 + erccdashboard = derive2 { name="erccdashboard"; version="1.28.0"; sha256="1hjn52mn07jz03xisbpnyxacg51i53p9ay485q6zfp77xbdkgvln"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; 1316 + erma = derive2 { name="erma"; version="1.10.0"; sha256="0pb9ar1wy613vg6sfdmn8n4cfv1328m8bagnigsjdb3hc3hbir4z"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; 1317 + esATAC = derive2 { name="esATAC"; version="1.16.0"; sha256="1gck90pdhcc8y012rl3kcysl7pm6y7xx0xc8nnrfhw629rkg6c6f"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; 1318 + escape = derive2 { name="escape"; version="1.4.0"; sha256="04iwvr9m62vzv80k40cvicji5x7ahj9lx28iz42kqwz8cqxv28l2"; depends=[BiocParallel dplyr ggplot2 ggridges GSEABase GSVA limma Matrix msigdbr SingleCellExperiment]; }; 1319 + esetVis = derive2 { name="esetVis"; version="1.20.0"; sha256="1052xznc94g35j8pxix53adzrd49965j8fyx149as7acqqh022dy"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; 1320 + eudysbiome = derive2 { name="eudysbiome"; version="1.24.0"; sha256="16fb0ajqm4mys0l65fwnjcpbpwiaz13zgqa4qhs2dch9d0gi4bap"; depends=[Biostrings plyr R_utils Rsamtools]; }; 1321 + evaluomeR = derive2 { name="evaluomeR"; version="1.10.0"; sha256="13vv3va8jn8pwwc05ikxwld57n2m1xy4y38ngpp2ghwlmqcl966l"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; 1322 + exomeCopy = derive2 { name="exomeCopy"; version="1.40.0"; sha256="1gxcqz0pmbccicqq72fcbjw11q57v1wxhi4hdhm2akh6w4j67r4c"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; 1323 + exomePeak2 = derive2 { name="exomePeak2"; version="1.6.0"; sha256="15c56gqi4i3h7jn1654r059f8v2ps1sz4iz5a7ah14nb7iaixzid"; depends=[apeglm Biobase BiocGenerics BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1324 + fCCAC = derive2 { name="fCCAC"; version="1.20.0"; sha256="0dvkkqgl89cikpkgj659pkig9fq9bb41jx4za8wy0a7ikkhm2q9f"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; 1325 + fCI = derive2 { name="fCI"; version="1.24.0"; sha256="16mxqwia3an84xzjhx4gdgmr55k0j5msa0bf9pvi6z5yvy1xmaqv"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; 1326 + fabia = derive2 { name="fabia"; version="2.40.0"; sha256="1dj7kxlajgwaiqfv41vl3zyif9lfa7341rki7rbdnadl1ir3dj11"; depends=[Biobase]; }; 1327 + factDesign = derive2 { name="factDesign"; version="1.70.0"; sha256="0dhbzpmhf8lrdxnlq229rbnqrzkd2p0hmj1yhbfv0k5gbg5xbswv"; depends=[Biobase]; }; 1328 + famat = derive2 { name="famat"; version="1.4.0"; sha256="1wpbczp3bl9vzcmfv9p15qlya6c27ybayqq3kdnhpvs41imxmwd7"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; 1329 + farms = derive2 { name="farms"; version="1.46.0"; sha256="1m28q80i1fm0nai9avsxv73gkbhynjb6yymk7z837aiyxq0488w4"; depends=[affy Biobase MASS]; }; 1330 + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.30.0"; sha256="1fzbjya0gwxy6xdl2vzy8by1y238mdbs99mhmbyqbhvlixc89267"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; 1331 + fastseg = derive2 { name="fastseg"; version="1.40.0"; sha256="1ds0hhc41nhfj3lmvld8nk2p547wd80b3yq7fjlf3dl3wfaxzy80"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; 1332 + fcScan = derive2 { name="fcScan"; version="1.8.0"; sha256="0b161ayq4m9xxfs0lgw632lgygzabz8gjl0n75050pa7qaazknvd"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; 1333 + fcoex = derive2 { name="fcoex"; version="1.8.0"; sha256="0kxzzyfyrdvw1prj8l3hg96y7k6d64gg34ibp6iq3kfwl4qy9qvn"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; 1334 + fdrame = derive2 { name="fdrame"; version="1.66.0"; sha256="0a5x51yrimv0phvx29s1x4dy1hivnnnm2jrbydl2ib552s407fwy"; depends=[]; }; 1335 + fedup = derive2 { name="fedup"; version="1.2.0"; sha256="0ixhq343x9jkwd10wwfbvvb0l58bd1mhilh1qlw3cyf7386g5f9k"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; 1336 + ffpe = derive2 { name="ffpe"; version="1.38.0"; sha256="0l6g0k2fg3xxncqx33xfckv8wmkbvpf5qqixi3zm36qmpm9xqagb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; 1337 + fgga = derive2 { name="fgga"; version="1.2.0"; sha256="0hrvgim9xdqymar3qswwybmmv8qmr5glqssckz3lbd04mnf07icq"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; 1338 + fgsea = derive2 { name="fgsea"; version="1.20.0"; sha256="10flcdm4b1kxnsvhl4k6mwkzb1vbai33k291j8nsrhj2cl5l8gm9"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; 1339 + fishpond = derive2 { name="fishpond"; version="2.0.0"; sha256="11cg0fv67ykilr7vqlmcd1vcp4bqnknxhznxhnxlhfby5c68lbjk"; depends=[abind gtools jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; 1340 + flagme = derive2 { name="flagme"; version="1.50.0"; sha256="187l1akzqawp6bqlshhixna0672y5pabcaaqk875a5llvbncixhq"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; 1341 + flowAI = derive2 { name="flowAI"; version="1.24.0"; sha256="12h4vbd3799i1g10jmf10lm1p0if4psx5ypzy64j4rndydhy449j"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; 1342 + flowBeads = derive2 { name="flowBeads"; version="1.32.0"; sha256="0834n338bsbjqpsy6g3idvvwx7bmmg7cd08hmna1vsnk4hl8fqim"; depends=[Biobase flowCore knitr rrcov xtable]; }; 1343 + flowBin = derive2 { name="flowBin"; version="1.30.0"; sha256="0vywz8pcfvfq4xdrx69ivb105181lxdvapdw43f4x7wqp1pf354z"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; 1344 + flowCHIC = derive2 { name="flowCHIC"; version="1.28.0"; sha256="1nh1dy0fg53mzi81gy2kaac1scjllc75w1hms0v3s9bgvrvc00aw"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; 1345 + flowCL = derive2 { name="flowCL"; version="1.32.0"; sha256="0rx3dhxhfq98xpjwsl4r0x1sympicdpvrifbsa380n0dkp85zp27"; depends=[graph Rgraphviz SPARQL]; }; 1346 + flowClean = derive2 { name="flowClean"; version="1.32.0"; sha256="1pxc07557667n00dygxcm3r8xki85r63ys06gqwqbsd4x26v1zj7"; depends=[bit changepoint flowCore sfsmisc]; }; 1347 + flowClust = derive2 { name="flowClust"; version="3.32.0"; sha256="0ch7mkq40qcnxwgzy51vjdlwyzx4bvp03vpdm6dwjc6qy8a6qfzi"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; 1348 + flowCore = derive2 { name="flowCore"; version="2.6.0"; sha256="0zbd2hrdbb6r0np6nd3ab8nlcf9l57vcwnnhbqkbas8y0c2i2mwp"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; 1349 + flowCut = derive2 { name="flowCut"; version="1.4.0"; sha256="19ri0as63i17qhl9lmn8pzlfzyc9rjv9zvlf1blbfvxrmry79chd"; depends=[Cairo e1071 flowCore flowDensity]; }; 1350 + flowCyBar = derive2 { name="flowCyBar"; version="1.30.0"; sha256="038bqv4pp69ipmk3a8n1r2444r24d1h8mdyzdigmhg7pkxx0aggp"; depends=[gplots vegan]; }; 1351 + flowDensity = derive2 { name="flowDensity"; version="1.28.0"; sha256="105klbdliakyypggnkgymf8hs08cirlhmlgccmhcwbiv9gndsc3p"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; 1352 + flowFP = derive2 { name="flowFP"; version="1.52.0"; sha256="156p4b0m4rin891zfp6959s0sjyv9rmmxb7fjw7q6hlyzm2xpqgx"; depends=[Biobase BiocGenerics flowCore flowViz]; }; 1353 + flowGraph = derive2 { name="flowGraph"; version="1.2.0"; sha256="1zyf7yslx5q6qi9is7jhn8qp0s3418z2jf9axrjj1y1fsz2v0ab4"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; 1354 + flowMap = derive2 { name="flowMap"; version="1.32.0"; sha256="0jvjpr2r0gb5yyg7xjp112iypsrgqim0ifwr6p46m3jshha8r6bp"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; 1355 + flowMatch = derive2 { name="flowMatch"; version="1.30.0"; sha256="020mh29l53zihi6h24sa6m7z447g8bgfw5s1fsm6j7yq0hnkxbx4"; depends=[Biobase flowCore Rcpp]; }; 1356 + flowMeans = derive2 { name="flowMeans"; version="1.54.0"; sha256="0iy8hvi0inj1ylhdx6q4mya9k55iazprz6fdrnq1mxb2iyndzsl6"; depends=[Biobase feature flowCore rrcov]; }; 1357 + flowMerge = derive2 { name="flowMerge"; version="2.42.0"; sha256="1bi1iqmyz2d0w9yy3nxl0wfa74hfk0ffp2yxh6ya6nx4rfz5jbba"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; 1358 + flowPeaks = derive2 { name="flowPeaks"; version="1.40.0"; sha256="14wb1cvnz3v4vmi2c4pki8wm602zbjdvf3c7qkkwhr389p3hqmsi"; depends=[]; }; 1359 + flowPloidy = derive2 { name="flowPloidy"; version="1.20.0"; sha256="0g8aym8grvhvrgxl7453x9bbdc09ag7hw9mg41jxrzzvwzvrdy8r"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; 1360 + flowPlots = derive2 { name="flowPlots"; version="1.42.0"; sha256="01r6c0hwg34ym0gziirrbk96mapn9pkxhshn0gwb1rqw3jw56cfm"; depends=[]; }; 1361 + flowSpecs = derive2 { name="flowSpecs"; version="1.8.0"; sha256="018y54w3dg8myywcda41lk07mbd5y99q07i9az0f938a5mb44vd8"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; 1362 + flowStats = derive2 { name="flowStats"; version="4.6.0"; sha256="0jjfq66m4lbpkynwxaparkd05znhp3jl9ccj37gyghly294x3rm9"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; 1363 + flowTime = derive2 { name="flowTime"; version="1.17.0"; sha256="160vx3zj34hf75rwbs0v0xa0skyzjg5q6l2qgajfyhz436i95lxl"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; 1364 + flowTrans = derive2 { name="flowTrans"; version="1.46.0"; sha256="1fkpma9a2097qay6mkswb7sb8jshvjmjldppz67l840d7mhkkpab"; depends=[flowClust flowCore flowViz]; }; 1365 + flowUtils = derive2 { name="flowUtils"; version="1.58.0"; sha256="0rgybkzbn8c3kpbz0ddghp1np0gka0cgiqvkk5jbnhlgf4s07161"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; 1366 + flowVS = derive2 { name="flowVS"; version="1.26.0"; sha256="02vikjzbi5r426l6085rfdqqvy8n8yaq7fwli18q385nb81vah7i"; depends=[flowCore flowStats flowViz]; }; 1367 + flowViz = derive2 { name="flowViz"; version="1.58.0"; sha256="039sh7qn25gp2b34khs8dyrdpxyapsjlprrvxlz8f7dl8gmggl04"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; 1368 + flowWorkspace = derive2 { name="flowWorkspace"; version="4.6.0"; sha256="11ni7kgk9s1fz3lvg85s6r7x2fhk4m7cdpilji05ya12jsyr3fig"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; 1369 + flowcatchR = derive2 { name="flowcatchR"; version="1.28.0"; sha256="1qrlswb3drwpglry4d79gc41g40wz5clwlvx1kzxrd4k0j9h6mv4"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; 1370 + fmcsR = derive2 { name="fmcsR"; version="1.36.0"; sha256="0mshslfj7jsix1yc03s54spbbi56zspic49kfsjfv8npikj1i5w0"; depends=[BiocGenerics ChemmineR RUnit]; }; 1371 + fmrs = derive2 { name="fmrs"; version="1.4.0"; sha256="16f60b1ch5d0n9h29d8yzvfi7cr02pjgj8k92cw4cjsrvi8kdgwn"; depends=[survival]; }; 1372 + fobitools = derive2 { name="fobitools"; version="1.2.0"; sha256="0n0accmkh1nvlinniggy25a1b799119zc805p89cn0zs9cfm4s8r"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; 1373 + frenchFISH = derive2 { name="frenchFISH"; version="1.6.0"; sha256="1mnihakvwh38ww64fklj16bvcw22q8x3b84kia0pf9ccznhk6vs3"; depends=[MCMCpack NHPoisson]; }; 1374 + frma = derive2 { name="frma"; version="1.46.0"; sha256="05jzjld2kbdbkz3l0xzd6898d6r9b0pbl96vm27w651zcg7mhrvv"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; 1375 + frmaTools = derive2 { name="frmaTools"; version="1.46.0"; sha256="181kkqsqxbzr3fpbrcyxzawv6g0gci51k7pg6wd7nlxhxdvsl667"; depends=[affy Biobase DBI preprocessCore]; }; 1376 + funtooNorm = derive2 { name="funtooNorm"; version="1.18.0"; sha256="1qbbivg2kiwvamdslfxdn3h0cdzz5gg2418ybymzyamhipc3457r"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; 1377 + gCrisprTools = derive2 { name="gCrisprTools"; version="2.0.0"; sha256="1aqcz6m4hj8b7a8wbnq1gj2b24p45cnj03xkcklhyf17vyfch0jh"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; 1378 + gaga = derive2 { name="gaga"; version="2.40.0"; sha256="1ax91nc57h3b7xs0skpwz15wkdp5ixcs0481yllhjk2ky1m26gbl"; depends=[Biobase coda EBarrays mgcv]; }; 1379 + gage = derive2 { name="gage"; version="2.44.0"; sha256="1spndmvl8wlz3z3wsvzi0fg9nzk81xi8c220pg2rf81j9181nkar"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; 1380 + gaggle = derive2 { name="gaggle"; version="1.62.0"; sha256="0qpr7pjsi3grpd33343x3gwdmiglxhcxrvi2w864rr89dxfjg188"; depends=[graph rJava RUnit]; }; 1381 + gaia = derive2 { name="gaia"; version="2.38.0"; sha256="0kx38vy9jmrzcbclbpnssd1v44ygxkvzag9wy22bl4spm6injnwy"; depends=[]; }; 1382 + garfield = derive2 { name="garfield"; version="1.22.0"; sha256="0jngv9ncx1bwqrwmzdbb17771n7j8xd4wa04jcbxsa32ngc69fh3"; depends=[]; }; 1383 + gcapc = derive2 { name="gcapc"; version="1.18.0"; sha256="05vck8414iwqrx53l8k02l1wzhb3xg1bsx7dj4vjjndcl2xqs4lz"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; 1384 + gcatest = derive2 { name="gcatest"; version="1.24.0"; sha256="0wll4r7npi09rxrkgq3x284lkjdaakxlf7x9a86s6a517wnlficq"; depends=[lfa]; }; 1385 + gcrma = derive2 { name="gcrma"; version="2.66.0"; sha256="0h7dl4if6skbcqdjdzqyghyswhwpx7xvb54lffz4wdaxpabp3001"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; 1386 + gdsfmt = derive2 { name="gdsfmt"; version="1.30.0"; sha256="147i33sb65n3cl3ibmjzgfm7i4ljy640k18mzknvc18v1906j9vp"; depends=[]; }; 1387 + geNetClassifier = derive2 { name="geNetClassifier"; version="1.34.0"; sha256="1phyphdc1i55ab1a05633b0p41q8n7w0byp1plgcav2s3h8mk1km"; depends=[Biobase e1071 EBarrays minet]; }; 1388 + gemini = derive2 { name="gemini"; version="1.8.0"; sha256="1s14k1jhbd1i67wfpcmkcqy7l887acksslryhmsxivlrksz8ndd4"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; 1389 + genArise = derive2 { name="genArise"; version="1.70.0"; sha256="18lh179nyc83s3srq7k4jqih93a6yi78kxv7n3g8afn73axwaknz"; depends=[locfit tkrplot xtable]; }; 1390 + genbankr = derive2 { name="genbankr"; version="1.22.0"; sha256="1wfcgyzj3fjv7fpjv1jv8dzyh0sgpgazrmx03cgldp9ys2110rny"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; 1391 + geneAttribution = derive2 { name="geneAttribution"; version="1.20.0"; sha256="1vyyh3yfq108l8g3qfp6vc1pkr6n26f6y870yax23m6lvds6fyrn"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; 1392 + geneClassifiers = derive2 { name="geneClassifiers"; version="1.18.0"; sha256="1bq14251cdr444bi3mf4875cr0hzm9sxiajg3kbc35602fdkh739"; depends=[Biobase BiocGenerics]; }; 1393 + geneRecommender = derive2 { name="geneRecommender"; version="1.66.0"; sha256="11mzy89y8ij3qhsknz48qdf54mz11di6m800rir7x302vxmag61b"; depends=[Biobase]; }; 1394 + geneRxCluster = derive2 { name="geneRxCluster"; version="1.30.0"; sha256="0l3v4m2bn9ff9j39k37h3xnrik022r70lkjf92npwxm5m0f03l8m"; depends=[GenomicRanges IRanges]; }; 1395 + geneXtendeR = derive2 { name="geneXtendeR"; version="1.20.0"; sha256="03vfb2si6wwn2ilqpiwacmbd3fj2lgzx71jf19sk7ypmnwld3zgc"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; 1396 + genefilter = derive2 { name="genefilter"; version="1.76.0"; sha256="05ba33m99dg414lasn36mjmkd9lvrxgpamy1qj2zvi31i9vkq6y2"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; 1397 + genefu = derive2 { name="genefu"; version="2.26.0"; sha256="0l9a20fncrifrmfawsx3azaxvs2v2i41xifgk6zi6dfyj1k4h3sk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; 1398 + geneplast = derive2 { name="geneplast"; version="1.20.0"; sha256="13gfxsc3i2c25h51sx46lsaivy78vy8mbj9frh5kqc2i6lwrcmpi"; depends=[ape data_table igraph snow]; }; 1399 + geneplotter = derive2 { name="geneplotter"; version="1.72.0"; sha256="1b7ngp9l00vrymx3d3nsda546s7p4ifr90idn3x2v4ilf38rfhp8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; 1400 + genoCN = derive2 { name="genoCN"; version="1.46.0"; sha256="159hrdlyc6gh5j3qmrq2s1xpbyd29ahlggr7ccr0wlcl1m9zjfgm"; depends=[]; }; 1401 + genomation = derive2 { name="genomation"; version="1.26.0"; sha256="0ynwsrlnp98iyz4bl2s7plin0k9iy9zix4jy4v38lcqg6n4iz00j"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; 1402 + genomeIntervals = derive2 { name="genomeIntervals"; version="1.50.0"; sha256="1iac3cs8dknhzgnqf0874mfxsl0fmkvyay64g9xmbnrziqyxpr7j"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; 1403 + genomes = derive2 { name="genomes"; version="3.24.0"; sha256="11x9q8ypryl37v494bcx0nnx1qcn4d7xn6hlnlaksarlcdb18rvg"; depends=[curl readr]; }; 1404 + genomicInstability = derive2 { name="genomicInstability"; version="1.0.0"; sha256="0r147z94pmf5lz68dfjq399szysj3imnlljz5n9mb0s4ypzw6p5k"; depends=[checkmate mixtools SummarizedExperiment]; }; 1405 + genotypeeval = derive2 { name="genotypeeval"; version="1.26.0"; sha256="166g9r6cx12qkira4l10379hswnmzjrhlknh910kdcrvjrwhixid"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; 1406 + genphen = derive2 { name="genphen"; version="1.22.0"; sha256="0zyhp542qfw10blg4vjarq7hdjxd84mlqjqvgaq7wdba87xgw05i"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; 1407 + gep2pep = derive2 { name="gep2pep"; version="1.14.0"; sha256="01sqy4wg0aqka29j3bwi14892lp56jfipxh9py6fmnmkqz523b1l"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; 1408 + gespeR = derive2 { name="gespeR"; version="1.26.0"; sha256="0fd204abvfmgl8gqqr0vnsjsihmbi4wb9q6slbnf8b0gkhpqhafq"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; 1409 + getDEE2 = derive2 { name="getDEE2"; version="1.4.0"; sha256="04dqxx2qj3lwfpiv07s9dlgxc7as59cj7qbima9v09cnyciqkib6"; depends=[htm2txt SummarizedExperiment]; }; 1410 + geva = derive2 { name="geva"; version="1.2.0"; sha256="0rx67qq52iab9qs8apb5a9j91cg9gn7z2xs56wpccd2ba72wdic8"; depends=[dbscan fastcluster matrixStats]; }; 1411 + ggbio = derive2 { name="ggbio"; version="1.41.0"; sha256="02vpn2z0xlvahhr43hrimiljs446iwghiva4q6khi0a8r1jb5xsr"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; 1412 + ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; 1413 + ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; 1414 + ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; 1415 + ggtree = derive2 { name="ggtree"; version="3.2.0"; sha256="1c6b7kjh44k096v8mhn53abr181vpbn7s6ab7zk4phnsyfxsclxb"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; 1416 + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.0"; sha256="0agvh1srirk5sv0ncj592ya86n6i3lp2yxijmykbwcqvy4ckb7cy"; depends=[ggnewscale ggplot2 ggtree rlang]; }; 1417 + girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; 1418 + glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; 1419 + glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; 1420 + globalSeq = derive2 { name="globalSeq"; version="1.22.0"; sha256="16l9pa6siahmfl8k6m0s2cch5jfqz4pcx4xzqi8gsqn9szy6f6jq"; depends=[]; }; 1421 + globaltest = derive2 { name="globaltest"; version="5.48.0"; sha256="0wpd1b0wcwkhixd6qkaw0j3y94d5b4aabgz2gq0r72k84jbaxb9f"; depends=[annotate AnnotationDbi Biobase survival]; }; 1422 + gmapR = derive2 { name="gmapR"; version="1.36.0"; sha256="0vyw54ijfydb9mvp0znvk850na1iw51higjm3wx69l8jny9l8w60"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 1423 + gmoviz = derive2 { name="gmoviz"; version="1.6.0"; sha256="1ipslmy35mzqdkj5nnjpzbniq9ykw78vxlf06m721x9c4ywdwwh9"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; 1424 + goProfiles = derive2 { name="goProfiles"; version="1.56.0"; sha256="0bgp5kbqgp3ckjyvd9xdghi7krnyy80vyqjs5f1kl9lji4psmzzg"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; 1425 + goSTAG = derive2 { name="goSTAG"; version="1.18.0"; sha256="168bf6cvca8ham7gy5h7xmm2l6y9l2kl83mgimw8dz08086kq2zq"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; 1426 + goTools = derive2 { name="goTools"; version="1.68.0"; sha256="02h0gci72mdxzw5bnkwkg28bnaai63cs4d19h1v6kpcwnvvc2ywg"; depends=[AnnotationDbi GO_db]; }; 1427 + goseq = derive2 { name="goseq"; version="1.46.0"; sha256="1psl9mqgx1d21kayaxvrxriw34fq30wnd57q5c1sk3p8iahg73g0"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; 1428 + gpart = derive2 { name="gpart"; version="1.12.0"; sha256="10wf7yqgybab96dfpmips7gjvzznvmjda39jlxv3bjyvibc9w5is"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1429 + gpls = derive2 { name="gpls"; version="1.66.0"; sha256="00nkqzgv58hfdlmb70is11m90v5ajcs8x9980pb0jh715z1sb5q4"; depends=[]; }; 1430 + gprege = derive2 { name="gprege"; version="1.38.0"; sha256="0v9hfx2r17zwn043nqmmx3hx08wcrdx3d371i53a936nhnrdvlmx"; depends=[gptk]; }; 1431 + gpuMagic = derive2 { name="gpuMagic"; version="1.10.0"; sha256="01420x69bmxrh3zgzl9dsmb4hh3qbv352zsfr9kxgn8qvax43d5m"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; 1432 + granulator = derive2 { name="granulator"; version="1.2.0"; sha256="02nfgzq4i0l45chcl62cpcqng5q733cbw4zf16nkf9m0v8si248i"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; 1433 + graper = derive2 { name="graper"; version="1.10.0"; sha256="1b3sapisif2qi6i8s9lb7ll91pvp2vkdk9r7fgxq004sjjwfx1ai"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; 1434 + graph = derive2 { name="graph"; version="1.72.0"; sha256="0x31lz3qimxmng6w99xnqazaj943d94b04nbziad4jfv7c1bc2h0"; depends=[BiocGenerics]; }; 1435 + graphite = derive2 { name="graphite"; version="1.40.0"; sha256="0wmdv4j6dinszxwpz2jddshkh1ahbhm2fxh6vhjsk4grw38i1lfr"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; 1436 + groHMM = derive2 { name="groHMM"; version="1.28.0"; sha256="1jcj29df4prknqwbydca1jb9w6njacjhwwk9jp0r5mvb88xrm60s"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; 1437 + gscreend = derive2 { name="gscreend"; version="1.8.0"; sha256="13ivc738inbrd06g84jmd6i4x8lmlc2n5z7z6rh1dym6r0hm77kr"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; 1438 + gsean = derive2 { name="gsean"; version="1.14.0"; sha256="1zkyn3mhq6k5wlxxvpsnp17f2aldfhqw6ach2sfii49m9iwxhpjl"; depends=[fgsea PPInfer]; }; 1439 + gtrellis = derive2 { name="gtrellis"; version="1.26.0"; sha256="0q2lyb8p1xhqqhw4q1br4r8mwq06mjws8iwbbilkngvs3brbmrzl"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; 1440 + gwascat = derive2 { name="gwascat"; version="2.26.0"; sha256="0s67jgk3gnfiyfjwhq4r5xlfnip29blis4fg75kn4qmvjv5j2pxx"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; 1441 + gwasurvivr = derive2 { name="gwasurvivr"; version="1.12.0"; sha256="1q31ydns5i8jk4p4731i57f80iwx6qm0r9fka4xd4wdxzk5kps8z"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; 1442 + h5vc = derive2 { name="h5vc"; version="2.28.0"; sha256="0i4p122cavihc29javrgg5ywqn1fkg73hp46hfj3v2qmwakihk4w"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; 1443 + hapFabia = derive2 { name="hapFabia"; version="1.36.0"; sha256="0niwlfy2ljsx1ivdxrpm0f8w75bs03xb2l43dkcm5gclwac2ys1v"; depends=[Biobase fabia]; }; 1444 + hca = derive2 { name="hca"; version="1.2.0"; sha256="1q7x62m43gsinx3gqfajy01qll3rf334yzzcl5ijzkxsi2ipyhdx"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; 1445 + heatmaps = derive2 { name="heatmaps"; version="1.18.0"; sha256="11fi0kzqx6ihvvwc852xhj34xv4aik0zyv47ad4zbhvb1mvxqv8a"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; 1446 + hiAnnotator = derive2 { name="hiAnnotator"; version="1.28.0"; sha256="1hjgn9gszr38q9syjl9qqw3lml5falp08asn01mq4h1m53akwxxv"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; 1447 + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.30.0"; sha256="02y6gy9h841aag0v88j1g0hw0ckd4zd3agjgvzi9mcmb76zhxz8k"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; 1448 + hierGWAS = derive2 { name="hierGWAS"; version="1.24.0"; sha256="1mxlk73p4vhnhs5yv5fbxdz3i8d425535r0zwinpi1jhshimr1mw"; depends=[fastcluster fmsb glmnet]; }; 1449 + hierinf = derive2 { name="hierinf"; version="1.12.0"; sha256="1qmpxajvclk3m7yl6h5hp4yixgf1v5whiaqh8k7z8g9kz148hi45"; depends=[fmsb glmnet]; }; 1450 + hipathia = derive2 { name="hipathia"; version="2.10.0"; sha256="1w14rgl96xssijjgzqdjjs15p33nrqg2wnvv70z5k2i7xzrjwfff"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; 1451 + hmdbQuery = derive2 { name="hmdbQuery"; version="1.14.0"; sha256="07xvfxpajwchi570739a2ax25bam852q1ifa8w5a02zb32rfbb6l"; depends=[S4Vectors XML]; }; 1452 + hopach = derive2 { name="hopach"; version="2.54.0"; sha256="1mj8glhsxkhfbj8mlghplz1dghdr7041r48njzzprx06x94aandi"; depends=[Biobase BiocGenerics cluster]; }; 1453 + hpar = derive2 { name="hpar"; version="1.36.0"; sha256="1inajapdhjxg0vwhsdnhfq22h3fv7ad7m1lv58y5v41p59av1w76"; depends=[]; }; 1454 + hummingbird = derive2 { name="hummingbird"; version="1.4.0"; sha256="1cp3agr0nzsqgs4s253vwdbzw5fkjdkas03svy8iwlzncgd000j5"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; 1455 + hypeR = derive2 { name="hypeR"; version="1.10.0"; sha256="12rkbcb75djwd1dd4677k7cw2wxpn9p64r735lbf3pkqmmgqn22p"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; 1456 + hyperdraw = derive2 { name="hyperdraw"; version="1.46.0"; sha256="1lkiqrk01hshms9ghsfynxwj69zr3463r3rg8rn7hkwn3bj8xyzj"; depends=[graph hypergraph Rgraphviz]; }; 1457 + hypergraph = derive2 { name="hypergraph"; version="1.66.0"; sha256="0xnyl9qh5p32ifvzkcl5g4a38zbnwykqzrp8gwz076a0ksiqqdxf"; depends=[graph]; }; 1458 + iASeq = derive2 { name="iASeq"; version="1.38.0"; sha256="198rhqv0rdi3hiw9didfd6q25a15rk6nazf8xp2rhindv2frdvi3"; depends=[]; }; 1459 + iBBiG = derive2 { name="iBBiG"; version="1.38.0"; sha256="10z3vb14xyidaz4spmsg3c9wpa3gzj8c3kwh6jvqmjxgpy7kq2d3"; depends=[ade4 biclust xtable]; }; 1460 + iBMQ = derive2 { name="iBMQ"; version="1.34.0"; sha256="1b15xiv8g8p2qy3dhg80ggppri9v7hawjz2kaj8an231vgl7j546"; depends=[Biobase ggplot2]; }; 1461 + iCARE = derive2 { name="iCARE"; version="1.22.0"; sha256="17x6kcrl2wrnj7dmvbyw3cflhv07hymyy78mj0476x0w7aiihwjw"; depends=[gtools Hmisc plotrix]; }; 1462 + iCNV = derive2 { name="iCNV"; version="1.14.0"; sha256="1hhmnlq3sliz253badrcwbkdr384pyl2jb3s0dkp585gngz143xg"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; 1463 + iCOBRA = derive2 { name="iCOBRA"; version="1.22.0"; sha256="0qg32g1rfvh6mx8wny1lrva9vc347288hzml7yb4rnrsx1hggkpa"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; 1464 + iCheck = derive2 { name="iCheck"; version="1.24.0"; sha256="06nfnj5267j9ynhz8hkzvada1d1yk62zqynif5xm6n7m9sk9fsl5"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; 1465 + iChip = derive2 { name="iChip"; version="1.48.0"; sha256="1zlwkw2qva32v515pziif6gdik5a5hqs53f3im12fzn3wgpcxvh0"; depends=[limma]; }; 1466 + iClusterPlus = derive2 { name="iClusterPlus"; version="1.30.0"; sha256="0w6r2clk8wdnnnjmq3cspmxiq1c8vwprd66xmdrhcqzbjkpkdw2b"; depends=[]; }; 1467 + iGC = derive2 { name="iGC"; version="1.24.0"; sha256="1jsmm5ldrq4vmcg3k3gd39j2fcbyzawg0p6jwz084z1v79z71m4w"; depends=[data_table plyr]; }; 1468 + iPAC = derive2 { name="iPAC"; version="1.38.0"; sha256="1yvjm18ybwa6b1ssaf1m3vas3h8jmmd6ycqdivf7lp2mdl3if4hw"; depends=[Biostrings gdata multtest scatterplot3d]; }; 1469 + iPath = derive2 { name="iPath"; version="1.0.0"; sha256="0q82hg7xgb8axsq8hajr22b83i8gsfrsd60qxaa4rrhph0cv7vlf"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; 1470 + iSEE = derive2 { name="iSEE"; version="2.6.0"; sha256="13x4xiy1qy2bz6yg06gx4lqly5ql6gbkbflvck1i1xws5kdc62z3"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; 1471 + iSEEu = derive2 { name="iSEEu"; version="1.6.0"; sha256="1d2ksq8343wf6acj8yznzcrv6bw1dw0fljzr8g3164zhl6zbhm5j"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; 1472 + iSeq = derive2 { name="iSeq"; version="1.46.0"; sha256="0q4aj9w3lywlrj74ik0hmmm5pczl4wlk6h1c3ds6lj2l8vr6ycmc"; depends=[]; }; 1473 + iasva = derive2 { name="iasva"; version="1.12.0"; sha256="122zgn141lpgnybqxy3ml33nbi9hm1r87kyr0nl1i3mqb0gd9dvl"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; 1474 + ibh = derive2 { name="ibh"; version="1.42.0"; sha256="1h1zqcwsmjk590gcwkzpqj0c9x2i85amg3q98a9qpirw9alr1vc8"; depends=[simpIntLists]; }; 1475 + icetea = derive2 { name="icetea"; version="1.12.0"; sha256="0iy9ki661774334d5wpibc8k8ri4d6aw4y3a15yik5fdgxg1g2z1"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; 1476 + ideal = derive2 { name="ideal"; version="1.18.0"; sha256="01fix9fwcm1mglpggrkgagy80fg6yh772k4a1m0i5pvm923wcggv"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; 1477 + idiogram = derive2 { name="idiogram"; version="1.70.0"; sha256="1qpip00mjdmc5vk6ab830ma6p4i0rgz8zih452jsqcfjpgc7q4p4"; depends=[annotate Biobase plotrix]; }; 1478 + idpr = derive2 { name="idpr"; version="1.4.0"; sha256="0zakv6rmi3n5b1yd232vmm6qzlmnqkjxqd69fj5blg7lr1jyknjn"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; 1479 + idr2d = derive2 { name="idr2d"; version="1.8.0"; sha256="0vkqdbifvidhamwav8k2h7kw8anprs3v8yl97kg593nw4564ii3b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; 1480 + igvR = derive2 { name="igvR"; version="1.14.0"; sha256="0i55zx2y92cl22d4x4h4gjdaknyxidsxqz22fpgyfd5abryx5ni3"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; 1481 + illuminaio = derive2 { name="illuminaio"; version="0.36.0"; sha256="0icsp610am5vrd8x2h9c450phn4vl9c5wnzqmkix5hkqzrykk34m"; depends=[base64]; }; 1482 + imageHTS = derive2 { name="imageHTS"; version="1.44.0"; sha256="1dg4p6qdhyhqdnpf3gaa1nlnw7d01yxhbhsbaiqnw9q9aprgi8hk"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; 1483 + imcRtools = derive2 { name="imcRtools"; version="1.0.0"; sha256="0c0qq3kxslj925zr7hjqigq4d67h2byazjby1dv1b5l3s5swl5gh"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; 1484 + immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; }; 1485 + immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; 1486 + impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; }; 1487 + infercnv = derive2 { name="infercnv"; version="1.10.0"; sha256="09yipqak5f5v8sf6kdnwl7v3xiaf15lpg6dmkw51inbi2vg23g5j"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; 1488 + infinityFlow = derive2 { name="infinityFlow"; version="1.4.0"; sha256="1bqkw5z6sxmj10wxzqaszjl5fw4rvfkr9j0w7qvprqyc3335z6a9"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; 1489 + intansv = derive2 { name="intansv"; version="1.34.0"; sha256="1y4s2vpaw0kmzz5qn52yq2dzzivdi5scmxh3w7garbispc6m0v1g"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; 1490 + interacCircos = derive2 { name="interacCircos"; version="1.4.0"; sha256="1jn3373sj9l5ypc21niv81rfwa2hfmp1g28ab9xx8hdv18rsl8d6"; depends=[htmlwidgets plyr RColorBrewer]; }; 1491 + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.32.0"; sha256="06jwcl34x6abg3s71w8y1jla6l0wd2jp72wb46kqbw6ry0wqj1yy"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; 1492 + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.32.0"; sha256="1pi887192k1jifb4k3pf2jn5hcl1xmmy6vwl22r9njsprdyb3kab"; depends=[BiocGenerics DT shiny]; }; 1493 + inveRsion = derive2 { name="inveRsion"; version="1.42.0"; sha256="0205fmv174x23gl5ka8k5j2x1lrwqc31zx7p0ngr9877kbi5idrj"; depends=[haplo_stats]; }; 1494 + ipdDb = derive2 { name="ipdDb"; version="1.12.0"; sha256="0q4lrhj3l5ayfx1bba9176r2wybpn710yxxrcprgr87h95wqac8v"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; 1495 + isobar = derive2 { name="isobar"; version="1.40.0"; sha256="0njl7b0k5hnwlj060ry6a8zjw035c21d107n0j2fyxg8nx4icqsx"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; 1496 + isomiRs = derive2 { name="isomiRs"; version="1.22.0"; sha256="16af3cqdc283bhz1b365hiq7xmkgamggdw8bgsvpqifzssqs2jj1"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; 1497 + iterClust = derive2 { name="iterClust"; version="1.16.0"; sha256="0ggr9h3kyyjnfiqwk4w22icg8fg5bln1vygk1ip0badcxk2b6gyw"; depends=[Biobase cluster]; }; 1498 + iterativeBMA = derive2 { name="iterativeBMA"; version="1.52.0"; sha256="1s86cq9c5a330cpxjpxgj1ibphmfsrxp1dn2gp7n50qkp2pyjsqa"; depends=[Biobase BMA leaps]; }; 1499 + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.52.0"; sha256="0jrjyrg2kfmgiybwdglrbfvfziy8i6jnkzb2ddr8z0670bmv8wxw"; depends=[BMA leaps survival]; }; 1500 + iteremoval = derive2 { name="iteremoval"; version="1.14.0"; sha256="15ls501y27lc9iyvz9fmk8w09512bg7cxl763amck1f6r3qnm8hl"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; 1501 + ivygapSE = derive2 { name="ivygapSE"; version="1.16.0"; sha256="1a35z2ndvdqj84g5327cpz3s6aqn953ycwgglcqxpaabf2jh18sq"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; 1502 + karyoploteR = derive2 { name="karyoploteR"; version="1.20.0"; sha256="0x3mld9q55r2fy452wxq5sjzmms10zmpkzs71c3w1fdli5hwszdq"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; 1503 + kebabs = derive2 { name="kebabs"; version="1.28.0"; sha256="0454drbsl9fz0s7k00qd56wj0lwvwmyzn4nlsww7nfgszw95ac4q"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; 1504 + keggorthology = derive2 { name="keggorthology"; version="2.46.0"; sha256="1rckw5yg9swf86cmh4nmrzb37w8m023c7q0pis1nqbcx9lgdgiw5"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; 1505 + kissDE = derive2 { name="kissDE"; version="1.14.0"; sha256="1k6aljlhj3k06a95imnna1jmx1xwvnbc72sbp2jqn2hc69pkyi2j"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; 1506 + lapmix = derive2 { name="lapmix"; version="1.60.0"; sha256="17niykbr8c388qbvjix2hc3zmpa5335bhmwsvnna4qa9v9fi9ln2"; depends=[Biobase]; }; 1507 + ldblock = derive2 { name="ldblock"; version="1.24.0"; sha256="1v9b372d5hpwwik6956mfwc9b3bibygz042i4nydsklnbwm5vcmg"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; 1508 + lefser = derive2 { name="lefser"; version="1.4.0"; sha256="0hf1il7h8dsqhdjxz88alyn4b5r95189gxs88ca9w1dcg7nx8xfv"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; 1509 + les = derive2 { name="les"; version="1.44.0"; sha256="08kahiq7j7xwr9hpynzcnbr3jchdd83iacywrnb03plz5jx22q9n"; depends=[boot fdrtool gplots RColorBrewer]; }; 1510 + levi = derive2 { name="levi"; version="1.12.0"; sha256="0mn8hcbld16qcdmb35hamg9p1rs7264k25s1bhw2ipcipkjv6fh3"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; 1511 + lfa = derive2 { name="lfa"; version="1.24.0"; sha256="02b90xjb2lfm86hbsdrvzpv20pijnq78ibz4dwjzqd9v4xhia3wr"; depends=[corpcor]; }; 1512 + limma = derive2 { name="limma"; version="3.50.0"; sha256="05ypmax1s6y1nz42bxn61wxhzzw6185q633crzpdcbbz3dz4vgvy"; depends=[]; }; 1513 + limmaGUI = derive2 { name="limmaGUI"; version="1.70.0"; sha256="0g4bp8ih848kh907ykmn6q1nzwabg5ifqb7123m87wdhrw224xjp"; depends=[limma R2HTML tkrplot xtable]; }; 1514 + lionessR = derive2 { name="lionessR"; version="1.8.0"; sha256="0n4ky9g2a4n5wisvkj9afkvaqdq4yxfabnx26vrjy8g34dg5dz3l"; depends=[S4Vectors SummarizedExperiment]; }; 1515 + lipidr = derive2 { name="lipidr"; version="2.8.0"; sha256="0w300ac15ra2yl3lz05wdg4vy2skxqdmnwljjcldgacgdfs012zb"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; 1516 + lisaClust = derive2 { name="lisaClust"; version="1.2.0"; sha256="0n3vwawlmybjbgvgb66pc0if63dn7mqhk74jpskqzv7c6f5nbvdv"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; 1517 + lmdme = derive2 { name="lmdme"; version="1.36.0"; sha256="0wi1lsaix6dgmj69kpm8rg5jbhv2a7r7a4n6zz1zg0q288pzs34s"; depends=[limma pls stemHypoxia]; }; 1518 + loci2path = derive2 { name="loci2path"; version="1.14.0"; sha256="18wzbsa22ix5q6icr2mmcfijrlv4dg222icyixlpzrcbhc8r42sq"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; 1519 + logicFS = derive2 { name="logicFS"; version="2.14.0"; sha256="1zcpili2syp0xhggy6pq6xa3w964jird0h3wb7i0r3427wd76mzj"; depends=[LogicReg mcbiopi survival]; }; 1520 + logitT = derive2 { name="logitT"; version="1.52.0"; sha256="0al9spb7i5g86x0ciap0y9n2i2hj33s9b6201wp0qq869aqz8g28"; depends=[affy]; }; 1521 + lpNet = derive2 { name="lpNet"; version="2.26.0"; sha256="0j1il1li6q82zy2f2mqprhr8pmk1xcs06jy55ddpvmxz8146s3sb"; depends=[lpSolve]; }; 1522 + lpsymphony = derive2 { name="lpsymphony"; version="1.22.0"; sha256="1bv28b1fgcazv6j0xw4nn6wljs37qnkyahqy7anrwissdpryhjfs"; depends=[]; }; 1523 + lumi = derive2 { name="lumi"; version="2.46.0"; sha256="0v33p66vn4alhx2il9wwdvc9sqvgasgj0s2gk85gjc76ad0017in"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; 1524 + m6Aboost = derive2 { name="m6Aboost"; version="1.0.0"; sha256="1513jrvvqf1b25dl40y991h21q1ilmqhg8izji1b0q0n3r1i121p"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; 1525 + mAPKL = derive2 { name="mAPKL"; version="1.24.0"; sha256="0l6r333hqgbk7b907j89g5q2ixx1zgv9hq39lixbv9bgcd99m9c6"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; 1526 + mBPCR = derive2 { name="mBPCR"; version="1.48.0"; sha256="0i1jrlj0xjkl2giw6955xyqfmcm8vscv8znpa0v0rkw06iilqmr2"; depends=[Biobase GWASTools oligoClasses]; }; 1527 + mCSEA = derive2 { name="mCSEA"; version="1.14.0"; sha256="1k574mm9k23gqmszds9s4mg1nmsrwh3c7r6adj0746120rl6m1dr"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; 1528 + maCorrPlot = derive2 { name="maCorrPlot"; version="1.64.0"; sha256="1pgn23npk65g8cc80gj5cp6k41xzqc7pnnx388vmkhxs3biy2l6v"; depends=[lattice]; }; 1529 + maPredictDSC = derive2 { name="maPredictDSC"; version="1.32.0"; sha256="1gax3v24z4xlzdnghwxfhi8xr6y6hz2d66597cpgl44z734i2252"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; 1530 + maSigPro = derive2 { name="maSigPro"; version="1.66.0"; sha256="02s2fpmkpqzr8xsqw93hgi8wrnx8klh92j1cyf5xiqqkl3581apb"; depends=[Biobase MASS mclust venn]; }; 1531 + maanova = derive2 { name="maanova"; version="1.64.0"; sha256="1bifi7fzjhc00j8ckifh8vs4l3vxmqfh5kpwd1qgcg8q25hpx7gw"; depends=[Biobase]; }; 1532 + macat = derive2 { name="macat"; version="1.68.0"; sha256="17jxgq0cblw77anx4kd3gnj1yjffid1iw2yg8kw2wvslzwyrnyn9"; depends=[annotate Biobase]; }; 1533 + made4 = derive2 { name="made4"; version="1.68.0"; sha256="0jnzxd9dk3ihbjpybb9f43iww1xsz8l85ivav9a4s8zwc8nbwn8c"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; 1534 + maftools = derive2 { name="maftools"; version="2.10.0"; sha256="1s8w3xwwigz803l81bs9cb2dbvvw5r9z8jjcav1rmh9wm8909nfd"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; 1535 + maigesPack = derive2 { name="maigesPack"; version="1.58.0"; sha256="19xixj4mk4vgh1rvxgnscyz6mx17nyqyhj64pixhz80mwa1w5vdd"; depends=[convert graph limma marray]; }; 1536 + makecdfenv = derive2 { name="makecdfenv"; version="1.70.0"; sha256="1v4x4x6x65sjdl194adhsz3l2lgcri9mmwix6dvcvd0pb321jpwn"; depends=[affy affyio Biobase zlibbioc]; }; 1537 + mapscape = derive2 { name="mapscape"; version="1.18.0"; sha256="0cim9svg45glfyli0liphhix2k0864fr0kl9kafv4zigbmfv83jy"; depends=[base64enc htmlwidgets jsonlite stringr]; }; 1538 + marr = derive2 { name="marr"; version="1.4.0"; sha256="00wq5s68fxp9cdc77frzk6pyim89yk3gk9786g6szx2acbaqas0j"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; 1539 + marray = derive2 { name="marray"; version="1.72.0"; sha256="1la805y8j522vpiazm1z6wpq4ibia9bib5fpiia5mxmpzmqg6gzz"; depends=[limma]; }; 1540 + martini = derive2 { name="martini"; version="1.14.0"; sha256="0ml5b38ivszn5qyqfi5c8xs43z05xiqhgybqaqxiasfl7rv18ikd"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; 1541 + maser = derive2 { name="maser"; version="1.12.0"; sha256="1yb0c4jyxanqkzrznqzddhdm0lv3m991irkk0by11sssbqbmpsnd"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; 1542 + maskBAD = derive2 { name="maskBAD"; version="1.38.0"; sha256="1fkzisfa0bazg0n41g9ixzh5xaw34wdkb56dx0ljg8n1dkq28jbn"; depends=[affy gcrma]; }; 1543 + massiR = derive2 { name="massiR"; version="1.30.0"; sha256="142lidx7j4n1sfizwwlschjc4di2cqz5v1q9p4v4i1xndpdxdwya"; depends=[Biobase cluster diptest gplots]; }; 1544 + matchBox = derive2 { name="matchBox"; version="1.36.0"; sha256="13i22m51g72jahxpxnfjr1jxbphiihy7yhwhm0ywxra9vmabpknp"; depends=[]; }; 1545 + matter = derive2 { name="matter"; version="1.20.0"; sha256="0m5rh4v7nsy8ijvz2amalihp5vzblpyhmkamy5zk66rwk17w304h"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; 1546 + mbkmeans = derive2 { name="mbkmeans"; version="1.10.0"; sha256="03hpj218s8fynmk1s50s0rinhsljikxdrff06yc8ysbyc6hyfb4k"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1547 + mdp = derive2 { name="mdp"; version="1.14.0"; sha256="0q721w901pxyjygz63d7a39h762ngqk8dqhn0grad82n90bywx0m"; depends=[ggplot2 gridExtra]; }; 1548 + mdqc = derive2 { name="mdqc"; version="1.56.0"; sha256="06yvmgn8qhh1lmm338sdp50jfw7v148sn2mwmcps3l56vh4bci74"; depends=[cluster MASS]; }; 1549 + megadepth = derive2 { name="megadepth"; version="1.4.0"; sha256="0mg7n3990qv65rg624473ssccka0yjpgc20glrdc5saci891j44r"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; 1550 + memes = derive2 { name="memes"; version="1.2.0"; sha256="0ry30wxp38iwbr70qmr5nj4s0c41j0srdfz1x08c9xnh948a67m8"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; 1551 + meshes = derive2 { name="meshes"; version="1.20.0"; sha256="1mwdrpqj7vphb30ii958hglzr0h4z7nv99v5sqvgjql76m8z0hcg"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; 1552 + meshr = derive2 { name="meshr"; version="2.0.0"; sha256="02c5lp08r5yvg5zz1lmxla8av9gp5gpgr6sc8jq715yf9w4s4xjl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; 1553 + messina = derive2 { name="messina"; version="1.30.0"; sha256="1k00l4qq5jn6lkna7ch9dyycrgfs446hajwki836hm1bvdfsz2q9"; depends=[foreach ggplot2 plyr Rcpp survival]; }; 1554 + metaCCA = derive2 { name="metaCCA"; version="1.22.0"; sha256="0bdnd895x3z0p0xihhgs9jcrrm8zc3a05w7m1rif2nlr8r07aixf"; depends=[]; }; 1555 + metaMS = derive2 { name="metaMS"; version="1.30.0"; sha256="126brvip0h69g7ak1324vi2kflppccj7v0rqfgcb4pcb6f5fr01q"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; 1556 + metaSeq = derive2 { name="metaSeq"; version="1.34.0"; sha256="09js59k0kzwrl8siy5dmr1wmim3klynx1yq8m0wajd0zj2zs5yyr"; depends=[NOISeq Rcpp snow]; }; 1557 + metabCombiner = derive2 { name="metabCombiner"; version="1.4.0"; sha256="0sx39fd8z5y00gb8471vl6n9gz8kz6yx23w3ph8slycnkr31pxag"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; 1558 + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.4.0"; sha256="01d792dcy53fbczv9c6yw2wd54r0lk1flnz93b37kccnnpfcdgi0"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; 1559 + metabomxtr = derive2 { name="metabomxtr"; version="1.28.0"; sha256="18672j5k2yhilsm509qvmxrnpswx0q1vgkpa418pbxhl1kz72pj0"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; 1560 + metagene = derive2 { name="metagene"; version="2.26.0"; sha256="1x6prcw2rqb179w9fb3irzijh8ng6flmza8ydnmhj992s8lq7iv7"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; 1561 + metagene2 = derive2 { name="metagene2"; version="1.10.0"; sha256="0k0aysnwq08c699frbsyr8rys2djgi0crw804qvl5fl956fnpczj"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; 1562 + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.36.0"; sha256="0fyvy40jibaz5y4br49547h559dh4kk0vdysh9hfg1hi1q269ck9"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; 1563 + metahdep = derive2 { name="metahdep"; version="1.52.0"; sha256="1pwij0xjrrcvp3c24ia78nsk1lhgxwr16md55h9292vh0pmh4d8w"; depends=[]; }; 1564 + metapod = derive2 { name="metapod"; version="1.2.0"; sha256="1s8dfzpgbpxbn3jvx891gvw3jyn43nlxb73yv1vjn85brk9zbqpk"; depends=[Rcpp]; }; 1565 + metapone = derive2 { name="metapone"; version="1.0.0"; sha256="0mbbmjv3kwfn78ssar0g2cnajgflxx4gay9m668mryxirnnyvvsr"; depends=[BiocParallel fields markdown]; }; 1566 + metaseqR2 = derive2 { name="metaseqR2"; version="1.6.0"; sha256="122j7466kww6z9vcxnmzy9a42z2iaxc0bl48jx46kikbs5i9in54"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; 1567 + metavizr = derive2 { name="metavizr"; version="1.18.0"; sha256="1grsk7aw1k9j9qgl033ca7azfifjhv07grpkjd57lpbasjchf9m2"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; 1568 + methInheritSim = derive2 { name="methInheritSim"; version="1.16.0"; sha256="0ig4a0v5j2fdc380m4c97477yhwzhi4c8h6cybam12vnl6l8mfr9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; 1569 + methimpute = derive2 { name="methimpute"; version="1.16.0"; sha256="0dkq86962hrpn4i038bl2j8sjnh0qyfv7x81p5ldrfm55l393wyy"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; 1570 + methrix = derive2 { name="methrix"; version="1.8.0"; sha256="0k1kgz05hv5wqarp12nkwif3g8bhyb2zqyv3l78cdi1gg7smbn3j"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; 1571 + methylCC = derive2 { name="methylCC"; version="1.8.0"; sha256="18mk945nzj591l0cxj1qfl58ifmhka89pf08dp3lc84n5k2ymjdf"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; 1572 + methylGSA = derive2 { name="methylGSA"; version="1.12.0"; sha256="1cwm1cn77l0gq6a53rd0zhwqp708v4cl9navirxw4pq4mba8nziq"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; 1573 + methylInheritance = derive2 { name="methylInheritance"; version="1.18.0"; sha256="1vz2aww1523h7lrac04sq4p521bbhw4l1cx4j20ijjddd9v5kr45"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; 1574 + methylKit = derive2 { name="methylKit"; version="1.20.0"; sha256="02px46h2ynprss7kwll3i0jz0clrdg0bys70jacd432xw34nm2sx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; 1575 + methylMnM = derive2 { name="methylMnM"; version="1.32.0"; sha256="1l87588frvl2cs9gf45axq90xhz94xx825zhm1w0gg7pjxgkwdmb"; depends=[edgeR statmod]; }; 1576 + methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; 1577 + methylSig = derive2 { name="methylSig"; version="1.6.0"; sha256="0kp1ckxbidwlbv4690g236qhbh9rzjglx8gpmkihq67hfci7537v"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; 1578 + methylclock = derive2 { name="methylclock"; version="1.0.0"; sha256="0zx839894d1wp9jd0ksdhikzyww12caqcm18n6yca012d43qkija"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; 1579 + methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; 1580 + methylumi = derive2 { name="methylumi"; version="2.40.1"; sha256="1lfcsv8k9c4ndfwlbdk3vd7fq58100bfijyxklna41zf8m8kkkka"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; 1581 + mfa = derive2 { name="mfa"; version="1.16.0"; sha256="1a672zd33bdg0pa490pxrr0jp8vnmnkngb3x12jsqqq56p4dzpjb"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; 1582 + mgsa = derive2 { name="mgsa"; version="1.42.0"; sha256="02yc49w9yccvhq6iwf09kfb7hkq35aswxymcrkf4j54q7mqhiflc"; depends=[gplots]; }; 1583 + miQC = derive2 { name="miQC"; version="1.2.0"; sha256="1a9f6w3j3w2wwqgl2hnl2jrrzycnzwhjv2cds2xk6lakz6x7h9hd"; depends=[flexmix ggplot2 SingleCellExperiment]; }; 1584 + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.18.0"; sha256="07snnvgnmxj0w0f9400vcqgchbfvhmqlh3wrk4wqacqc0ldcxb7a"; depends=[]; }; 1585 + miRLAB = derive2 { name="miRLAB"; version="1.24.0"; sha256="01fhzkhr59n6ph2av52vwnyagv9dxarc1l4vz4hlsyqs5z2fna2q"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; 1586 + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.22.0"; sha256="1j25gslxbsvwdz2j8qyj8mc341d6sr5qamiav819lbv91h8vx7gm"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; 1587 + miRNApath = derive2 { name="miRNApath"; version="1.54.0"; sha256="014159iszf0m8kf1w36q8cp4bv60hlcqwzkizdnk1hbpxvalr5w6"; depends=[]; }; 1588 + miRNAtap = derive2 { name="miRNAtap"; version="1.28.0"; sha256="1d0khib40j3jyg7nksk0slhryaar9wjx7zwd408r4ndxqghgxj8w"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; 1589 + miRSM = derive2 { name="miRSM"; version="1.12.0"; sha256="1p6qg1wnill41amv8sppz51b4li8zdlh8fq577fwl6yrp63rp319"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; 1590 + miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; 1591 + miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; 1592 + miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; 1593 + mia = derive2 { name="mia"; version="1.1.19"; sha256="0fzmp349pwlka8qw58mym9zi0z35i7cfs3dnfxlygj58f9a41dk5"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; 1594 + miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; 1595 + miaViz = derive2 { name="miaViz"; version="1.2.0"; sha256="1plkr810cnb6kq7zqlmnx8c2mfa1gzsa92r1hj6xrqx9ykc8hapd"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; 1596 + microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; 1597 + microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; 1598 + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; 1599 + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; 1600 + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.0"; sha256="0sd5y2a4gl3j7z3hq1vzdlzv1dbqzdc0ifhk948wrb9mqfmgbqhq"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; 1601 + midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; 1602 + miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; 1603 + mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; 1604 + mina = derive2 { name="mina"; version="1.2.0"; sha256="10nlv2l9gf5vbgh9aqa97xk628rdl3kgiybskrxipsjm8jmvw5c3"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; 1605 + minet = derive2 { name="minet"; version="3.52.0"; sha256="0nhgvgci4r9pjfsnvxyj2q8im1wvig4zmfx2kidw8f63x2ip2rbd"; depends=[infotheo]; }; 1606 + minfi = derive2 { name="minfi"; version="1.40.0"; sha256="0d5220nknwgi1020vhvf7408n5p80dmad66n85af5776qn84a6nx"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; 1607 + mirIntegrator = derive2 { name="mirIntegrator"; version="1.24.0"; sha256="1fsab3q019a94rdb9xbdbfscyyaq9vnrfnykkmk847v75hg7sfvc"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; 1608 + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.2.0"; sha256="06fyw0hrmbcg24jdhlyz6z5pvp994zfmvw3c3icya5gammiqpx9n"; depends=[assertthat caTools corrplot data_table dplyr MASS pheatmap pscl purrr R_utils reshape2]; }; 1609 + missMethyl = derive2 { name="missMethyl"; version="1.28.0"; sha256="0hyix2h2sarfipx9jd2878nrl2ng6c03g1r7gm7grxzj007davpw"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; 1610 + missRows = derive2 { name="missRows"; version="1.14.0"; sha256="08xfbczrrwk0ksp8bgd8kzlj388j7kp35vg7c2hncpwxzj9gcxgm"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; 1611 + mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; 1612 + mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; 1613 + mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; 1614 + mixOmics = derive2 { name="mixOmics"; version="6.17.26"; sha256="10ir4876sjmw2mw0cjvshwy3qyhsyz6g1ihyr3dycgzya0jcxw1x"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; 1615 + mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; 1616 + moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; 1617 + mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; 1618 + monaLisa = derive2 { name="monaLisa"; version="1.0.0"; sha256="0idfq3l3sxx2gxcksvvk6ayyv2zb9hb5bls6dkincv7mraa20max"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; 1619 + monocle = derive2 { name="monocle"; version="2.22.0"; sha256="0wb2c1jf502lrfx3d0amb09fvhalrwxvpsp99jsab162v4hddg85"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; 1620 + mosaics = derive2 { name="mosaics"; version="2.32.0"; sha256="09qz4xl9xhzidw0w41bp0adkbhnasa309yn8rdi9nsfpswhaiysb"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; 1621 + mosbi = derive2 { name="mosbi"; version="1.0.0"; sha256="07wnz85qcs9zqc9xjmkxs6nhdsbhgbi1bmsri299ng3ib92vlh6j"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; 1622 + motifStack = derive2 { name="motifStack"; version="1.38.0"; sha256="1ck6bbnrab8mbf70alfdsrcv6lq0fkvcy3klhcwyxxir7r9sgbaz"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; 1623 + motifbreakR = derive2 { name="motifbreakR"; version="2.8.0"; sha256="0lrgy64sv2ma6kylp4lsbwkg6ci1kn6qkk0cvzw3m4k3bgia1npj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; 1624 + motifcounter = derive2 { name="motifcounter"; version="1.18.0"; sha256="17yhhg423yjhaix9x2w2484l22vj6ra086ymzdfhygnjz5vanpmd"; depends=[Biostrings]; }; 1625 + motifmatchr = derive2 { name="motifmatchr"; version="1.16.0"; sha256="0f7j54zdn51h1gcn81vqs8avmschjwqprjcfpvsi00q4fna3fg7z"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; 1626 + mpra = derive2 { name="mpra"; version="1.16.0"; sha256="14klqy7d5vkn3vhcjwra8s1bm5ck4llq3ha6yggdl5mqy5vxmv81"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; 1627 + msImpute = derive2 { name="msImpute"; version="1.4.0"; sha256="0lw5300xfk001sqrips77y2qfg5qjdapd2snsnz6gcgnhj7ds82c"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; 1628 + msPurity = derive2 { name="msPurity"; version="1.20.0"; sha256="0pawspfpwp88y0q88qjsiwmjjbdscg80jv14lj2fdf11bbsra78v"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; 1629 + msa = derive2 { name="msa"; version="1.26.0"; sha256="0kz99bnzslnqpvmqr2x2wxiasm3rzpg4lhl9ax3dp5rmkba7hp69"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; 1630 + msgbsR = derive2 { name="msgbsR"; version="1.18.0"; sha256="1hapz3rywf0znhl7r5zrh0vznnkqlg8gyz4bbqj1wn64346xsd7y"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; 1631 + msmsEDA = derive2 { name="msmsEDA"; version="1.32.0"; sha256="1jammjkjjkcqad2ki02l2pdf4jybyh71hv463aya2ylmzsin5vi9"; depends=[gplots MASS MSnbase RColorBrewer]; }; 1632 + msmsTests = derive2 { name="msmsTests"; version="1.32.0"; sha256="0xmjgd8rqpb8i7d46pvnj7da2di8bwfdncr48b8hgylkc98ghznb"; depends=[edgeR msmsEDA MSnbase qvalue]; }; 1633 + msqrob2 = derive2 { name="msqrob2"; version="1.2.0"; sha256="0ab9b26x8syybqmij56wjsjrmv8xyjsprrrskyz9qi7fr23mp0zc"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; 1634 + multiClust = derive2 { name="multiClust"; version="1.24.0"; sha256="1i06khc4yc134ny5m6i77c203pvm8r06rkplz5sd9jgjkbg68lkq"; depends=[amap cluster ctc dendextend mclust survival]; }; 1635 + multiGSEA = derive2 { name="multiGSEA"; version="1.4.0"; sha256="1nqj0pc7nj77910id5nm9sv0s1mxahjfgl3jdhpnn52q7md9y1d9"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; 1636 + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.12.0"; sha256="1b56jagvgnlw7vrrd728fm14p754gx46wyb5q5yhqj0mshnv6xh4"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; 1637 + multiMiR = derive2 { name="multiMiR"; version="1.16.0"; sha256="06mvikmy018z6zhzwg999kvmccgprd5k4hy64l1fscv0ax6rp6b8"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; 1638 + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.18.0"; sha256="0kg72l5zdffsnsw1yxld52j7mjbjybvqmbr11vby93jnsxxvlfm9"; depends=[doParallel foreach SummarizedExperiment]; }; 1639 + multiSight = derive2 { name="multiSight"; version="1.2.0"; sha256="06gjldjssrmf09fc6i9m0z3b7vzqyb48279333cai4gy1g9aba4w"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; 1640 + multicrispr = derive2 { name="multicrispr"; version="1.4.0"; sha256="1s4x8ry16safvawjmrgbbjk4aj3igkbhgj9cfdh6cspw06ysdkyk"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; 1641 + multiscan = derive2 { name="multiscan"; version="1.54.0"; sha256="0qjh302hpld7zdrfqkbx8a5hrp3bwfn539pv36mwizjigjznnsi9"; depends=[Biobase]; }; 1642 + multtest = derive2 { name="multtest"; version="2.50.0"; sha256="03z71r7g318nwwgiz0k8qwbhghw1hhdhh1an4qnb0nc62c5x9kns"; depends=[Biobase BiocGenerics MASS survival]; }; 1643 + mumosa = derive2 { name="mumosa"; version="1.2.0"; sha256="093mzbkx7sf5gg5qcvyzgkfzzdpjm8pd6hb7dwavcjxf90y14l1h"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; 1644 + muscat = derive2 { name="muscat"; version="1.8.0"; sha256="0m5i1sqi3nzxlja9nvz9msmic9mf8y9s6f60c9b2mgbfp2kyf55w"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; 1645 + muscle = derive2 { name="muscle"; version="3.36.0"; sha256="0a081ay0360h0r9731d145prdg15d1g96s7zzcn411qa8fwg7rv0"; depends=[Biostrings]; }; 1646 + musicatk = derive2 { name="musicatk"; version="1.4.0"; sha256="168578fg6gmg48gwd6944ln30g75nyq16yzyjw175yanj09g9qfs"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; 1647 + mygene = derive2 { name="mygene"; version="1.30.0"; sha256="1s9hlcj9g2a3q2aa3ahjk3j2ksk4v9mpax1cxm739gywaf4sbknp"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; 1648 + myvariant = derive2 { name="myvariant"; version="1.24.0"; sha256="1d87iwfpfwppzdahai0rv85ky855n4slqhb9gpb4lf4yx6r11i9i"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; 1649 + mzID = derive2 { name="mzID"; version="1.32.0"; sha256="0r001amd4m99cv0ixw38rpz0zv0xqb0qyvs16bz1i4a756391qri"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; 1650 + mzR = derive2 { name="mzR"; version="2.28.0"; sha256="1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; 1651 + nanotatoR = derive2 { name="nanotatoR"; version="1.10.0"; sha256="13q73fzzwf2whhba0phl91dn9ra71rgc7lkzh241z2sygy7xgwgk"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; 1652 + ncGTW = derive2 { name="ncGTW"; version="1.8.0"; sha256="1f5qsfbgwv5zr0ddxymqkbszahr0l5vsa458bl23qj6x4j76zzwf"; depends=[BiocParallel Rcpp xcms]; }; 1653 + ncRNAtools = derive2 { name="ncRNAtools"; version="1.4.0"; sha256="17vil5xl9092mf0jh2282y7zw701id4xdajrcwypzgn89nw91lra"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; 1654 + ncdfFlow = derive2 { name="ncdfFlow"; version="2.40.0"; sha256="1c6wb2x24ydqp5nxrx6bhj6f13x9djfy9awkc7zn63xkag7mvvar"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; 1655 + ndexr = derive2 { name="ndexr"; version="1.16.0"; sha256="0px1v1iiqpryr07lnk56bg0i9aiqhvk2l556bp5vyzillf98gf76"; depends=[httr igraph jsonlite plyr tidyr]; }; 1656 + nearBynding = derive2 { name="nearBynding"; version="1.4.0"; sha256="12m44v7ydfzdqzpx4881ls6mg1npgwd549wxjlndamkzj41yha4q"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1657 + nempi = derive2 { name="nempi"; version="1.2.0"; sha256="0srpf4aryl59n186628869rxrwp3qmcx8zzslrxfflayijk4gyps"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; 1658 + netDx = derive2 { name="netDx"; version="1.6.0"; sha256="1xpsm10p0nhkr75j55s046hbg86rkwg8xz2jq0b5al8y461a79m4"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; 1659 + netOmics = derive2 { name="netOmics"; version="1.0.0"; sha256="0mq6f5ggrmx07s3lg9g707p3r42pw6yznzjsh04bl39cz0v8vp86"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; 1660 + netSmooth = derive2 { name="netSmooth"; version="1.14.0"; sha256="18bf8bplhvm9igkgdydbr05qrjz9l9jhbkj50a5r6flsiwwn8xi0"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; 1661 + netbiov = derive2 { name="netbiov"; version="1.28.0"; sha256="0x2sk4zfrwb2xzdj5iywadsdlrzc4s20rxdca8dc9hssb88cyjqf"; depends=[igraph]; }; 1662 + netboost = derive2 { name="netboost"; version="2.2.0"; sha256="1v52srmvvzxzv0flai5x3z2rmdxgsj8qp6y599xf7mv2n8v5wwnc"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; 1663 + netboxr = derive2 { name="netboxr"; version="1.6.0"; sha256="0clajqn8v9cg3cpzhqkcjb8l7mi6jdyglhlwnaaq2ic6nn9g7cfc"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; 1664 + nethet = derive2 { name="nethet"; version="1.26.0"; sha256="0bf218y1975n4h1kr1vgqrzk7n6wm7gvbplz1abcq11j601vgql7"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; 1665 + netprioR = derive2 { name="netprioR"; version="1.20.0"; sha256="0fmgvwblirhmqz41m2p1wjmj6wv60syw3k527s7110a3nxhgxxk5"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; 1666 + netresponse = derive2 { name="netresponse"; version="1.54.0"; sha256="0a0w58ws8p6x2skavags5313v9lb51rbjqzsyi17kd0ipmgxld08"; depends=[BiocStyle dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; 1667 + networkBMA = derive2 { name="networkBMA"; version="2.34.0"; sha256="00r7ibf2h294c862l1hd78q72d451hgm2axyvzka8xbp58w3dp8g"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; 1668 + ngsReports = derive2 { name="ngsReports"; version="1.10.0"; sha256="03d09hrwp8091lp8nz58vc72x7dlybcb6i0w8nkidlmq7ygyywri"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; 1669 + nnNorm = derive2 { name="nnNorm"; version="2.58.0"; sha256="10zjdlk9y0sdni8yjany42812b06p23v33cq6kxbv6d1cb6z9s81"; depends=[marray nnet]; }; 1670 + nondetects = derive2 { name="nondetects"; version="2.24.0"; sha256="1pb5z3k46ksllrzal4x0hsikzhqdbx0kgrs0ad04sj8xh5zhmmdh"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; 1671 + normalize450K = derive2 { name="normalize450K"; version="1.22.0"; sha256="0gc2jrd5mynywl7bqdl077scapl8jnis9m9ngrn8wdlv512sahlr"; depends=[Biobase illuminaio quadprog]; }; 1672 + normr = derive2 { name="normr"; version="1.20.0"; sha256="1azfvgs6cfngqaqjfj916jdf2p2ywld62yy82wflxlvciyrwf0qy"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; 1673 + npGSEA = derive2 { name="npGSEA"; version="1.30.0"; sha256="0zfbncj8x218i5yc4wymm8nckkhygvaz8kgpfpr0j2qnwsxkw8xh"; depends=[Biobase BiocGenerics GSEABase]; }; 1674 + nuCpos = derive2 { name="nuCpos"; version="1.12.0"; sha256="1sqanvdhmvbyr52mc5hvsp2kdfgy8d8bh2w4av213i96nqmz55vw"; depends=[]; }; 1675 + nucleR = derive2 { name="nucleR"; version="2.26.0"; sha256="0wfgfjrjvd0gg7i2zjxsc37dk3s7cw4jqd41hrqq31m2iqgbk6lk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; 1676 + nucleoSim = derive2 { name="nucleoSim"; version="1.22.0"; sha256="1y0f8dlarb5cm3na691ik04f3vwzdfzbd9fvffcgkfj9py6y28n5"; depends=[IRanges S4Vectors]; }; 1677 + nullranges = derive2 { name="nullranges"; version="1.0.0"; sha256="0n29ij0q96ridwbwvgsyj8c17dbscfgwgama0lxjcbvrdp4dnclh"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; 1678 + occugene = derive2 { name="occugene"; version="1.54.0"; sha256="0kri0356b4560liv9c64nvjmyyssyb93xh244k1k2q50yy5il5b0"; depends=[]; }; 1679 + odseq = derive2 { name="odseq"; version="1.22.0"; sha256="14bkx7b1pc3kdmn1s9vbc5rb3wxzyyi8n56yrkiqvxc99zl3s9cr"; depends=[kebabs mclust msa]; }; 1680 + oligo = derive2 { name="oligo"; version="1.58.0"; sha256="1cmnnq0d5xsjsx8c8n8wcl6l9d31sbglb8yrsibykcvnhw15fsf6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; 1681 + oligoClasses = derive2 { name="oligoClasses"; version="1.56.0"; sha256="1ia2f19swiwb0552nfwkai4gl0av07cj75b6jwiviqa1bli09264"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; 1682 + omicRexposome = derive2 { name="omicRexposome"; version="1.16.0"; sha256="0wznnvql0fyv7c2m5sd6668gf1j1vdjc0wa225kkyzm7qxj4gzyv"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; 1683 + omicade4 = derive2 { name="omicade4"; version="1.34.0"; sha256="0lq71sya6lxy0j33d97gf28mvvkir6820css5d23fc7si27w5swm"; depends=[ade4 Biobase made4]; }; 1684 + omicplotR = derive2 { name="omicplotR"; version="1.14.0"; sha256="1pwflkxmg1ava97llh7n5gcr6zvl9dlc5c2bgy6k6nz0sy0mnv8j"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; 1685 + omicsPrint = derive2 { name="omicsPrint"; version="1.14.0"; sha256="1330hxwyivyrcn32xszf5h0mlxxxdih5jn4g12b8vv004a2lqnzd"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; 1686 + oncomix = derive2 { name="oncomix"; version="1.16.0"; sha256="170b7xyb7j5hwhlwl3dziq7h9wckglibaw04kcya4fnjh3zjry21"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; 1687 + oneSENSE = derive2 { name="oneSENSE"; version="1.16.0"; sha256="1c6zjw6yfndb0gj974481c9jc2wb3l0c01zlk89z3i0nxs6bvkj9"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; 1688 + onlineFDR = derive2 { name="onlineFDR"; version="2.2.0"; sha256="0qqkxfq3993xqs44yj171s5bj992m4g79rzbc3ysja1afcxln5z7"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; 1689 + ontoProc = derive2 { name="ontoProc"; version="1.16.0"; sha256="15ds6n3dn3l45vdzmc7qp3wk0ndx7q6yhnwa2ywnlljl8jvi83qj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; 1690 + openCyto = derive2 { name="openCyto"; version="2.6.0"; sha256="11svr1lk383pkm4npwrnf3h37b3drjsmcwcgdbb45x8k2k95z2fm"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; 1691 + openPrimeR = derive2 { name="openPrimeR"; version="1.16.0"; sha256="078pqsxs7017jgswrlzrsbn42q84q3wj7h83paldsc9js3mxcbp9"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; 1692 + openPrimeRui = derive2 { name="openPrimeRui"; version="1.16.0"; sha256="0h3ic5lpf5i0dykirdbzac1f2vdbiq4cfxi4iyj612ayd3arlg6h"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; 1693 + oposSOM = derive2 { name="oposSOM"; version="2.12.0"; sha256="14ib08i4hf3cyakp7hv994qapbl3kqnbyvsr26i45v6l9s90v37b"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; 1694 + oppar = derive2 { name="oppar"; version="1.22.0"; sha256="1sx5wqim9aiz3q5xc68am73lwj98g9mwgnzgb4yggjbvfh05aylf"; depends=[Biobase GSEABase GSVA]; }; 1695 + oppti = derive2 { name="oppti"; version="1.8.0"; sha256="0rvsk9lry3ffssrg5r6wpwxjhy7qf6y5agixn8l8pnwq6afsh012"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; 1696 + optimalFlow = derive2 { name="optimalFlow"; version="1.6.0"; sha256="1bl3ji4cqgiv9krhsapz4hrzda4jszb9r9pl095sxs6pzaa2ssyp"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; 1697 + orthogene = derive2 { name="orthogene"; version="1.0.0"; sha256="113l8qwq9vv8dhah5lrvm68g60562pmwfzdaipykznmkix1cqsl0"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr GenomeInfoDbData ggplot2 ggpubr gprofiler2 grr homologene jsonlite Matrix Matrix_utils patchwork repmis]; }; 1698 + pRoloc = derive2 { name="pRoloc"; version="1.34.0"; sha256="1gzvd5ll0xdx6v6rzfvnjwijpvisl8x61fihyqh1gwz2zqxm86bz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; 1699 + pRolocGUI = derive2 { name="pRolocGUI"; version="2.4.0"; sha256="1qpr92ryjw8w2sxlycmfr9x5z6l9wnvvvy7ylrwr936x9ph6zzys"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; 1700 + packFinder = derive2 { name="packFinder"; version="1.6.0"; sha256="143w988hqbk13wbvkm88fdv2j8ki9m4q3ar25cfp0ahpjx2r6d0c"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; 1701 + padma = derive2 { name="padma"; version="1.4.0"; sha256="1gs2g5w712vankyyndqn1j3jl3lfm2qq6bizq7rywiih06hnawcl"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; 1702 + pageRank = derive2 { name="pageRank"; version="1.4.0"; sha256="0j5310jfgxgmiqzsjchilxyjim4c6ar0qw97kpm8d9h2cvnk20rd"; depends=[GenomicRanges igraph motifmatchr]; }; 1703 + paircompviz = derive2 { name="paircompviz"; version="1.32.0"; sha256="1hp42pc2y4km8n1ry9r4hx3wfm92c7yaliz68m2yr7vjx11x1nid"; depends=[Rgraphviz]; }; 1704 + pairkat = derive2 { name="pairkat"; version="1.0.0"; sha256="0siqm6xsbqr96528kw8yqmr7bc5p7d8y56gpa6hmnrds3bh450r2"; depends=[CompQuadForm data_table dplyr igraph KEGGREST magrittr S4Vectors SummarizedExperiment tibble]; }; 1705 + pandaR = derive2 { name="pandaR"; version="1.26.0"; sha256="0aj4iwvpg75b78rh5z430x2lzq4yf4789vylgdlgas62z81fl71l"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; 1706 + panelcn_mops = derive2 { name="panelcn.mops"; version="1.16.0"; sha256="1rais9gasa0ll1kfrxmxcxg7dg5d2sq6057anlzw4ri6fgvsnv4z"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; 1707 + panp = derive2 { name="panp"; version="1.64.0"; sha256="1z3pwb9gx4pgrzvx6ziph5bb85n2j6c18xby0rrmsvr7x19q16nc"; depends=[affy Biobase]; }; 1708 + parglms = derive2 { name="parglms"; version="1.26.0"; sha256="09p7iplwa802sjrr246a3pdsjpy1s2ywk82n6yjryf13mfp0vdf8"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; 1709 + parody = derive2 { name="parody"; version="1.52.0"; sha256="1f1bwy2pmjcwfnxmy0sqlfmvg0wp18m1m78wr3s1qr9qlqpi5ln8"; depends=[]; }; 1710 + pathRender = derive2 { name="pathRender"; version="1.62.0"; sha256="1an9fqsyjyvshmwmqh0csz9l72xra2sml2b65sbmnm18mj7agayj"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; 1711 + pathVar = derive2 { name="pathVar"; version="1.24.0"; sha256="18zdzn17p701ad1yr8ma6jiaxd3w56j73j1sqkk9b9nyjkfnk122"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; 1712 + pathifier = derive2 { name="pathifier"; version="1.32.0"; sha256="14fsmslhv6cil4mpi7z3pg7ygpj3d36962xswl89j4zr3663vk3f"; depends=[princurve R_oo]; }; 1713 + pathview = derive2 { name="pathview"; version="1.34.0"; sha256="1jdl81lvrsz03b1nws90nssf2clipipzaqvwm1pq57mvshnlnkjr"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; 1714 + pathwayPCA = derive2 { name="pathwayPCA"; version="1.10.0"; sha256="01m2g8icx7gq4fpxxxm356wr8wc5dmq3lnvr1s5dj1qqm4hk70xr"; depends=[lars survival]; }; 1715 + paxtoolsr = derive2 { name="paxtoolsr"; version="1.28.0"; sha256="0c72fp6nisv6j0rkzw4yip3f94wq990nkmaw3h7lv5r5gpj9b69x"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; 1716 + pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.0"; sha256="0b4wskh6kyqrj3hn83jwcqdp92nzzw3y3r74j5q5ksvad03dl6al"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; 1717 + pcaMethods = derive2 { name="pcaMethods"; version="1.86.0"; sha256="1fj2v6sna4lbw7ar9h93y2g4pzylqqp7760ih425gcai7s19xdrg"; depends=[Biobase BiocGenerics MASS Rcpp]; }; 1718 + pcxn = derive2 { name="pcxn"; version="2.16.0"; sha256="1n61gn1k74k61rrfp340kjchafrfmfidslkqxdr0ijbacbp017qw"; depends=[pcxnData pheatmap]; }; 1719 + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.58.0"; sha256="1vk0kppsg9vynwzflkv3frv16hsl43lpk9awr6x22a1frmpndj10"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; 1720 + peakPantheR = derive2 { name="peakPantheR"; version="1.8.0"; sha256="0czryplga40w5ipzqwzil48vyxll6pscpy80r0gwzxw0mw0sw80k"; depends=[doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders shinythemes stringr XML]; }; 1721 + peco = derive2 { name="peco"; version="1.6.0"; sha256="14h7lmijllffhwpybpcvgkzpj5i0n1pbf25gbjgkyzyn21fcf93g"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; 1722 + pengls = derive2 { name="pengls"; version="1.0.0"; sha256="0415pxlxd2dmr5zphjrszylglj8hjrifawxzmfz2ns8p9hagr0f4"; depends=[BiocParallel glmnet nlme]; }; 1723 + pepStat = derive2 { name="pepStat"; version="1.28.0"; sha256="07k5hilmnjhqcndq6vmibargf7fr0ah4zpcd2mm6656w3xy1ywax"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; 1724 + pepXMLTab = derive2 { name="pepXMLTab"; version="1.28.0"; sha256="0wk502spk5cmhvygnirfywk4dq13imvvbnxy97ak2c011phpaxf1"; depends=[XML]; }; 1725 + periodicDNA = derive2 { name="periodicDNA"; version="1.4.0"; sha256="1v6rl234qs0la2r7qwiahslw7yr8mppcdcpand2lk8w862k67nda"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; 1726 + perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; 1727 + pgca = derive2 { name="pgca"; version="1.18.0"; sha256="1wrp4k0b1sj75yhw799aqcb6dmimza6gvcxkn5ayfn6x3hfifwwl"; depends=[]; }; 1728 + phantasus = derive2 { name="phantasus"; version="1.14.0"; sha256="0p8xa0jqasgn61qzzva7wrjk8d2xcsn9kd20c4dbc61sg3cxrcir"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; 1729 + phemd = derive2 { name="phemd"; version="1.9.0"; sha256="0hqivlc9hzcfcprng1499nas84fwvgisg8976vsjciyn903355jr"; depends=[Biobase BiocGenerics cluster cowplot ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; 1730 + phenoTest = derive2 { name="phenoTest"; version="1.42.0"; sha256="0ci44hwicvz32sgv6mywawyygd1wzz2bayx6rshwvpmz1mixncq6"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; 1731 + phenopath = derive2 { name="phenopath"; version="1.18.0"; sha256="1c0cxm3cwxprjkkwimzgjz0h67dykx2jy7jin13h7vzpwwvphh2p"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; 1732 + philr = derive2 { name="philr"; version="1.20.0"; sha256="0dndab3wsj9mvgjpkmazd55w72cjh5xwjqs0xzjbfmkx7786rk09"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; 1733 + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.18.0"; sha256="0qbls06h7fkqsg8yhnc8dmbqhkgxxxa29j3h7cwxdq4nvg66frjl"; depends=[matrixStats plyr]; }; 1734 + phyloseq = derive2 { name="phyloseq"; version="1.38.0"; sha256="0k0aj8f7g1vr7l0qcc507b3w67zc1k9x7sdblm7mjb20zqr3916s"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; 1735 + piano = derive2 { name="piano"; version="2.10.0"; sha256="13nnysbr2ljh0r303aja797bjxppksc6ac0qms8qy8nkn155gcw3"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; 1736 + pickgene = derive2 { name="pickgene"; version="1.66.0"; sha256="0l5gk659gxh7i0sq3j1dg1v69p108ig84d735dv3x8mf9bq1mfhk"; depends=[MASS]; }; 1737 + pipeComp = derive2 { name="pipeComp"; version="1.4.0"; sha256="1r61m3468b4v3vw60yywgxs4r4w1lr55wgwndll6wfh62pzgvrf2"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; 1738 + pipeFrame = derive2 { name="pipeFrame"; version="1.10.0"; sha256="0463z7kyaar474yfa05j754df49yasl3qmsfxz0qb3y1d7p37grr"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; 1739 + pkgDepTools = derive2 { name="pkgDepTools"; version="1.60.0"; sha256="1ah9fzrwj9cc1vnv66dp27w41w9c7k48xzn7phwiavyn786k1ajf"; depends=[graph RBGL]; }; 1740 + planet = derive2 { name="planet"; version="1.2.0"; sha256="1cw4v69rfi2d0awpxcvhr0jvnbavvjmsnhkaqkq8538adbf7x7mr"; depends=[dplyr magrittr tibble]; }; 1741 + plethy = derive2 { name="plethy"; version="1.32.0"; sha256="0zn8jm525rxpbr268f98iqrwn27hw07s9sg9ln6mh9j05pqdjkcr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; 1742 + plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; 1743 + plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; 1744 + plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; 1745 + plotgardener = derive2 { name="plotgardener"; version="1.0.0"; sha256="02qqzqb4fdfg3j0hhfjpy8q7xbbsb2n2d79pvsa1dhyihwai5w0q"; depends=[curl data_table dplyr ggplotify plyranges purrr RColorBrewer Rcpp rlang strawr]; }; 1746 + plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; 1747 + pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; 1748 + pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; 1749 + podkat = derive2 { name="podkat"; version="1.26.0"; sha256="0xj0cvw5wj29qfdjs25gawxm2fpbd1dypga54j0fi7nzp94y8ydr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; 1750 + pogos = derive2 { name="pogos"; version="1.14.0"; sha256="0chvlasp42j63hjv7s9swas9m91wkl264wng2r7461pa5kq9x2pp"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; 1751 + polyester = derive2 { name="polyester"; version="1.30.0"; sha256="0399jal3f2f4bxfxclx54rxxs8azvm63whjiqwrnkq0s3n7wd08y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; 1752 + powerTCR = derive2 { name="powerTCR"; version="1.14.0"; sha256="0c7crgiwpizynl1bd4i5si96kw7cffnnhsbz4w44a3wd1d6ibk4g"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; 1753 + ppcseq = derive2 { name="ppcseq"; version="1.2.0"; sha256="1rjqyq31lm54apznp3ymk8mm3vcyq4yxz026awy3dh4s53nzsv0a"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; 1754 + ppiStats = derive2 { name="ppiStats"; version="1.60.0"; sha256="1xidx2dc1vi9p6m4k73afy9whhl2hv7yk3m6w5ari9ya0h20qccp"; depends=[Biobase Category graph lattice RColorBrewer]; }; 1755 + pqsfinder = derive2 { name="pqsfinder"; version="2.10.0"; sha256="1y5y321b2j76k5x1fl3v7xk4q2zg9f0amjl3203113srgjfgm09c"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; 1756 + pram = derive2 { name="pram"; version="1.10.0"; sha256="09429ara5j09429iz66s921nr5n6wgq0ib3zlw63v237findgjm3"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; 1757 + prebs = derive2 { name="prebs"; version="1.34.0"; sha256="1dxsz7z5x1cx21gmvh02dy9h7d8rxz5ycwmj2xppr69hlsvvjh9p"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; 1758 + preciseTAD = derive2 { name="preciseTAD"; version="1.4.0"; sha256="0wb5d3qbz8hd7hnw0mb4vqc4b1v1x7fwskii4kfpmv0bafck5vvd"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; 1759 + predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; }; 1760 + preprocessCore = derive2 { name="preprocessCore"; version="1.56.0"; sha256="1i93vdqa6pwzamiryp3lv6cyvhx9shs01is0q6vbmdvcbii2vf3x"; depends=[]; }; 1761 + primirTSS = derive2 { name="primirTSS"; version="1.12.0"; sha256="0pm9yd5pd7igw5l2f9fbbi7rp2nxjqp9cn80i46q1m4bj65cgng7"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; 1762 + proActiv = derive2 { name="proActiv"; version="1.4.0"; sha256="1jnpplxd030syrjwhzcyl43a7g5dy0pmhns35kfcp5l6aw3bafkg"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; 1763 + proBAMr = derive2 { name="proBAMr"; version="1.28.0"; sha256="0bn65jf56aqabb65dqnp3zmjgmnd8q0vbhy2ddc20hcyj5v1hvb0"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; 1764 + proBatch = derive2 { name="proBatch"; version="1.10.0"; sha256="0s1276s1mfpv3psnq91k7ip1dr6x6fyw78r12zy4w1hhjqlz1g7s"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; 1765 + proDA = derive2 { name="proDA"; version="1.8.0"; sha256="11as09lmpls1nzy575dk9l0afx6wrv2nxbsrsq3qa40s5rh5bbj1"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; 1766 + proFIA = derive2 { name="proFIA"; version="1.20.0"; sha256="0bbh35pg5dby4my51m895kzgnsc8xzrniy3bjqc5v9w47nl7p6zk"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; 1767 + procoil = derive2 { name="procoil"; version="2.22.0"; sha256="1w2fqrxs3bm0z2qh9mmq3wz3x3iw8w7qnf8vh5zrrw87k7zpva78"; depends=[Biostrings kebabs S4Vectors]; }; 1768 + profileScoreDist = derive2 { name="profileScoreDist"; version="1.22.0"; sha256="0j5rhxsld3vqmf7kdch0hfzfiyyr66g1r1ahzmw3vz51qfkkk379"; depends=[BiocGenerics Rcpp]; }; 1769 + profileplyr = derive2 { name="profileplyr"; version="1.10.0"; sha256="11xcm3xack6xqrvsz9gvjfmwjy623b0v5vrz5l30jiaigpfdlx4r"; depends=[BiocGenerics BiocParallel Cairo ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; 1770 + progeny = derive2 { name="progeny"; version="1.16.0"; sha256="0zhr5i5v87akzqjb6wid67nhg2icrw6w0awdy87x848c6c1i6j9y"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; 1771 + projectR = derive2 { name="projectR"; version="1.10.0"; sha256="1ny6fdjqc4smd2b7s5zknm0m8mi1wrapcbzlj4n8d1mhd1xxms0d"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; 1772 + proteinProfiles = derive2 { name="proteinProfiles"; version="1.34.0"; sha256="049q579x3m1sw0l5n22ldsrdkmcx61j8jlabq8kydwdhr6d9mbli"; depends=[]; }; 1773 + psichomics = derive2 { name="psichomics"; version="1.20.0"; sha256="158a9v201z1ad3fm572nz57l8czs8d5nhk9ig162cl1mpfhfrh35"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; 1774 + psygenet2r = derive2 { name="psygenet2r"; version="1.26.0"; sha256="1fs2ljshqfyq4hnlm882fc0vd7x4sif5k3qlliqbxai6k5sdh3li"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; 1775 + ptairMS = derive2 { name="ptairMS"; version="1.2.0"; sha256="1y6wpg85058migpgyankns5v84jv4fk8n7raxxfryn85bqsn0ida"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; 1776 + pulsedSilac = derive2 { name="pulsedSilac"; version="1.8.0"; sha256="0k2rq76bxg9cq6vjvwwx51hph6s0z1xmka62x6hv19qwakc64qnn"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; 1777 + puma = derive2 { name="puma"; version="3.36.0"; sha256="0li5xxvvf1346ilc6ksg0w9ri2r2w9l7cm0d7i3s2y3bai7g36ka"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; 1778 + pvac = derive2 { name="pvac"; version="1.42.0"; sha256="0zic1p12nn6yb5spkz01wr6c15cq7ilhhb2xxkxj0fsw1qalfgnb"; depends=[affy Biobase]; }; 1779 + pvca = derive2 { name="pvca"; version="1.34.0"; sha256="12d4rc29qj8sf3y3j3gfnihs7gy7gq3hnlb1ivzsqqw8rwk53cyg"; depends=[Biobase lme4 Matrix vsn]; }; 1780 + pwOmics = derive2 { name="pwOmics"; version="1.26.0"; sha256="1r38hbkyai2cf9izljp8sr2mx9ql6bznnfm9gra6kmnhlz0lrw1c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; 1781 + pwrEWAS = derive2 { name="pwrEWAS"; version="1.8.0"; sha256="08z5phrwvpc3xaw7vzq4jam2aaba8i6vb46zm420fby7lxrc2bbx"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; 1782 + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.12.0"; sha256="03v1q13xxnbi3r43b4y5psfmcpavnvx2ccr8r0gd6hfhx4wg98a2"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; 1783 + qckitfastq = derive2 { name="qckitfastq"; version="1.10.0"; sha256="177agr9q2rjdk67kc2nv6idnqqk2aq595yc83r8pq6h2wp2ynmn0"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; 1784 + qcmetrics = derive2 { name="qcmetrics"; version="1.32.0"; sha256="1wfc8v1z77wpqfslls8vkw9vi51ylnr8ssr6lm8xz1jd9zijf9ny"; depends=[Biobase knitr pander S4Vectors xtable]; }; 1785 + qpcrNorm = derive2 { name="qpcrNorm"; version="1.52.0"; sha256="0zbp5kd6lm1qg9xzg9mibcqm7r3ap9gz7fhaf07ls5q1zk63cdj9"; depends=[affy Biobase limma]; }; 1786 + qpgraph = derive2 { name="qpgraph"; version="2.28.0"; sha256="03xkx3ck41xd62v5xnyzkqr4mj9cxsyx20fm4cw5688a1w6znafc"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; 1787 + qrqc = derive2 { name="qrqc"; version="1.48.0"; sha256="1bnm1shj543kfzljlp5hzk40k6sijja161g2fi06xy2qydilxsml"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; 1788 + qsea = derive2 { name="qsea"; version="1.20.0"; sha256="095ais50x4csqxjj3nq7w2h3xkr4acn3bbkmqilmy7nnpj9z9dnz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; 1789 + qsmooth = derive2 { name="qsmooth"; version="1.10.0"; sha256="01h7amkhbnzrp5m3j5gb1qqmfszi1qpz5vsimkrzkmpvidg932jh"; depends=[Hmisc SummarizedExperiment sva]; }; 1790 + quantiseqr = derive2 { name="quantiseqr"; version="1.2.0"; sha256="1f36i3dda8b8j332cn881sdv7bimjlzraxvy3g7m9mb4m17f97i4"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; 1791 + quantro = derive2 { name="quantro"; version="1.28.0"; sha256="1r2wbsndc0ji22ap27gbr1wy8icj3cjxwqlz1x0gvxkaj69mwsfq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; 1792 + quantsmooth = derive2 { name="quantsmooth"; version="1.60.0"; sha256="137smvhk80h557mmxn0i14yp4cxlbha66jj1rqka8ln0flrak98s"; depends=[quantreg]; }; 1793 + qusage = derive2 { name="qusage"; version="2.28.0"; sha256="0sb6p8kx9kw2f5xjbiiizq5p8jxsawy8yaf18i2m8kf52f9s3scz"; depends=[Biobase emmeans fftw limma nlme]; }; 1794 + qvalue = derive2 { name="qvalue"; version="2.26.0"; sha256="1mn2qmqn89lfsx7rg54d1lwz45bfx0b91q6ahf43a1yzrrhwn138"; depends=[ggplot2 reshape2]; }; 1795 + r3Cseq = derive2 { name="r3Cseq"; version="1.40.0"; sha256="06jcj2i8p7zrwhcszv4yzpvlbqx64ryrq8jy75zp2qxilx784m2d"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; 1796 + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.34.0"; sha256="16nx5gfa5bfmzxs01rpgx3av8lmh9k707jgj9s63zkxxnxq5gilz"; depends=[data_table XML]; }; 1797 + rCGH = derive2 { name="rCGH"; version="1.24.0"; sha256="18gk79j8li02ix6gdl27wyhmz65iqqp020zrj4ajw6l17r5d4k2y"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1798 + rDGIdb = derive2 { name="rDGIdb"; version="1.20.0"; sha256="1f87w5r9xnbn0xyb6mf7w5rm06spqv1lv9xlakm8yhmzjhdrz1bj"; depends=[httr jsonlite]; }; 1799 + rGADEM = derive2 { name="rGADEM"; version="2.42.0"; sha256="1v8xgqqv7m2kyc38x9ppwsv87ivll5ppd6z76zcxj5yspkkrqw3v"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; 1800 + rGREAT = derive2 { name="rGREAT"; version="1.26.0"; sha256="0kr61mhxp9phn1136fci450zwfhsipchmlm8d5rgib4lh0zbxrhl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; 1801 + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.0.0"; sha256="011bz3phc0fyzda3rbbmbazl3lrs8zs3pb9labxz223k5ihz010h"; depends=[imager reticulate rGenomeTracksData]; }; 1802 + rRDP = derive2 { name="rRDP"; version="1.28.0"; sha256="0vxazmvljk1sb00c0ir28l2m2c57yd27bd5ii5d5dq1f5jsjxr3d"; depends=[Biostrings]; }; 1803 + rSWeeP = derive2 { name="rSWeeP"; version="1.6.0"; sha256="0dvvymh9am32ja7jh5rn927gn6g83kcrycd8brajqzwblc7acyl7"; depends=[pracma]; }; 1804 + rScudo = derive2 { name="rScudo"; version="1.10.0"; sha256="15hbmgx016qiagbjgi59ddllrrl10zk5xnkkv1rbsm63agr0kq64"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; 1805 + rTRM = derive2 { name="rTRM"; version="1.32.0"; sha256="1gsg8vfrrjhhlgcwxi1qlyd2yyvbf0nigswa11s0was2bah6cai6"; depends=[AnnotationDbi DBI igraph RSQLite]; }; 1806 + rTRMui = derive2 { name="rTRMui"; version="1.32.0"; sha256="1pd8jrvfl6lvfz6bjzsna9mkdv1yryabssgq4ych0x3hhw5m1inr"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; 1807 + rWikiPathways = derive2 { name="rWikiPathways"; version="1.14.0"; sha256="1731icc36xnb76qmfk7jyyhalaf433dwr1q93m7jah36chr6x7p4"; depends=[data_table httr RCurl rjson tidyr XML]; }; 1808 + rain = derive2 { name="rain"; version="1.28.0"; sha256="0pykkqqw8mrkg71bkrhwz24fzk806hd61p8c65mxx254f4n63x5a"; depends=[gmp multtest]; }; 1809 + rama = derive2 { name="rama"; version="1.68.0"; sha256="1iq9xdbnl0p44cbngj1nj620fkd76xk2k6iyn1361iz1l9qdhf9l"; depends=[]; }; 1810 + ramr = derive2 { name="ramr"; version="1.2.0"; sha256="1prg1ds143kd5vqxkv1bxsp3b6mc0sx32wc702581fl995isrssm"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; 1811 + ramwas = derive2 { name="ramwas"; version="1.18.0"; sha256="164gcl1qk0rhi6acmx0rmmnxp8b6f76b2fr6w1mq5n65vk74ba72"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; 1812 + randPack = derive2 { name="randPack"; version="1.40.0"; sha256="1r3vcbjsrlsyl6j4mxiwj20j9lz7frzmq7mp0qj2jgf4xb0ifkw3"; depends=[Biobase]; }; 1813 + randRotation = derive2 { name="randRotation"; version="1.6.0"; sha256="17ldp80p2ch15sj3l66p4p5vdzh5l9xixrzp204crk54fjwwykrq"; depends=[Rdpack]; }; 1814 + rawrr = derive2 { name="rawrr"; version="1.2.0"; sha256="096pqk7njbhvrms9f6m2cyb88rc5mji7aadwvql3ir7bxx0zd2rp"; depends=[]; }; 1815 + rbsurv = derive2 { name="rbsurv"; version="2.52.0"; sha256="0arsfcdfk6b5llblw85dl5q7hj3cpwiybkavmav0175hmn34svcb"; depends=[Biobase survival]; }; 1816 + rcellminer = derive2 { name="rcellminer"; version="2.16.0"; sha256="0rlkm4pnwkrbj8jqqp7zyc19slsly6pmfzxm6v2bg43nhirmh658"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; 1817 + rebook = derive2 { name="rebook"; version="1.4.0"; sha256="1mfshchsr5my1z91q0rg31g8dk1izxjrz6ffq8iiq9w1fwgjzfkx"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; 1818 + receptLoss = derive2 { name="receptLoss"; version="1.6.0"; sha256="19spz99d6d3ba7fnkmkkqb5nphn39hjq9gmyv7zlsvc8rgxz19k1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; 1819 + reconsi = derive2 { name="reconsi"; version="1.6.0"; sha256="0djiq9l70wvicbqia14n1bbd9c7ykvsyrp0r2arw2b2pqh8281fh"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; 1820 + recount = derive2 { name="recount"; version="1.20.0"; sha256="1maa0fi6dqkcsjlbm52gl0r37qcv951xrc6m4rc6fvp6cb83x68p"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; 1821 + recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; 1822 + recountmethylation = derive2 { name="recountmethylation"; version="1.4.0"; sha256="14b06842a97q9cggz6l7kfrlal1kaiq49j2f8sql4b2p6qdh4dpn"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; 1823 + recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; 1824 + regionReport = derive2 { name="regionReport"; version="1.27.1"; sha256="0nf77g6x67dakbb3i55d65rcma4nya8lkjm5d8wbpq7hhvfhy2p1"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; 1825 + regioneR = derive2 { name="regioneR"; version="1.26.0"; sha256="0y1mawzfvxrympc47q3isk96sl9d1bc8kdsxpm8rnhqg5bmgwya6"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; 1826 + regsplice = derive2 { name="regsplice"; version="1.20.0"; sha256="1vm1vvi5gfw5ssyi0qng3jmanvyl2mx08w9bi5990pj0j6ycc70y"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; 1827 + regutools = derive2 { name="regutools"; version="1.6.0"; sha256="03gjlpn1pk2xkcbg4i1az505nq2gi6ajplq3asbg1fl9p2dbw8kh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; 1828 + restfulSE = derive2 { name="restfulSE"; version="1.16.0"; sha256="118zmj9jhgblkgi1arwndrigc1gl37q6gydhw3xfdiml4lp2zags"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; 1829 + rexposome = derive2 { name="rexposome"; version="1.16.0"; sha256="05p77f6w9qq9k3yqxm5xlmlir5pqinb9h8adn1xjfh01d9pagsmc"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; 1830 + rfPred = derive2 { name="rfPred"; version="1.32.0"; sha256="12ppidpn8piw1w450nm35qxzfgyki4ihvp7cri8qk9gipvd3kq9z"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; 1831 + rfaRm = derive2 { name="rfaRm"; version="1.6.0"; sha256="095p3nsax57m74j4dj7klpwkl8w2326c9yhc8s0c236kwyszz9rv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; 1832 + rgsepd = derive2 { name="rgsepd"; version="1.26.0"; sha256="149065kmlzdzb9bjwm7x5y3l5j1y7qxzh8xz5liicz5rc4s7pb4i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; 1833 + rhdf5 = derive2 { name="rhdf5"; version="2.38.0"; sha256="13zm993l3i9f98gqdpxgsrzf9fgqppx2ajvrl0i3f7cvpifcgxqg"; depends=[rhdf5filters Rhdf5lib]; }; 1834 + rhdf5client = derive2 { name="rhdf5client"; version="1.16.0"; sha256="1pbgjhcqilr1kzx3a5m4113p6alcr30z1mdd33qqllcarnc0pf4n"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; 1835 + rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; }; 1836 + riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; 1837 + ribor = derive2 { name="ribor"; version="1.6.0"; sha256="0g6z3rlmf3i6w3j0dldycz9k8jbg3d2ilv319270515j0lmmdngc"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; 1838 + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.0"; sha256="18ix3mp725vmmd1a4jvl9ayby1pjn1pir54a42aflbb8bq0g46rz"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; 1839 + rmelting = derive2 { name="rmelting"; version="1.10.0"; sha256="0jhlwnllp6zpi5prd9g51c1czi994jvky3f2v84p9hvgf91xf5f8"; depends=[Rdpack rJava]; }; 1840 + rmspc = derive2 { name="rmspc"; version="1.0.0"; sha256="1fszm50s87xafddspwl6cjg8gbp7mvd16w6ajz8fy0wlc4x5qia3"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; 1841 + rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; 1842 + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.24.0"; sha256="0asx51fxg9hc0brbqlxl0jyfyidh4fbwyclrvczzzqasf277f23w"; depends=[RColorBrewer]; }; 1843 + roar = derive2 { name="roar"; version="1.30.0"; sha256="0hqh4vsnxl2sn1bf6s6wxl2nskb40rhvrysdvb6dr60zkih3g347"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; 1844 + rols = derive2 { name="rols"; version="2.22.0"; sha256="08asfjl6smdg05m41m0bdc2awiqbhyb016z9f77adx3vc73mh613"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; 1845 + ropls = derive2 { name="ropls"; version="1.26.0"; sha256="0mz5lrdsihx66sgx9klnvpxvw1mjjcbijcsdbgxwaimzl9k1kr05"; depends=[Biobase MultiDataSet]; }; 1846 + rpx = derive2 { name="rpx"; version="2.1.12"; sha256="0ykafx304g8gdry2r1l91zbnr6zv7jkknjyv5p0dkf0wvpqy82iy"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; 1847 + rqt = derive2 { name="rqt"; version="1.19.0"; sha256="0skdk1jd3hcamh21s5nr3b5g5b4wki8y99zj7xkyg4nrdki6853i"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; 1848 + rqubic = derive2 { name="rqubic"; version="1.40.0"; sha256="0drzggalrvijqvq2x38r2l07rr2248rrw8lvhnfkszabb5qg4a71"; depends=[biclust Biobase BiocGenerics]; }; 1849 + rrvgo = derive2 { name="rrvgo"; version="1.6.0"; sha256="0sxybvvbgrxpddfr80cla6pmf8q3kiqrd9r9ca0hq8m4av9nv9cc"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; 1850 + rsbml = derive2 { name="rsbml"; version="2.52.0"; sha256="0mdyr637sgasc156cv8i2s2mpl1hdvilfwwkhvw7l95pl90gnsh2"; depends=[BiocGenerics graph]; }; 1851 + rsemmed = derive2 { name="rsemmed"; version="1.4.0"; sha256="00m9g6jrn21cs3wsrblimla3mwrd3y4y4drm4zl1x0xkz1f14r8f"; depends=[dplyr igraph magrittr stringr]; }; 1852 + rtracklayer = derive2 { name="rtracklayer"; version="1.54.0"; sha256="11bh9khra2qdmicppi6ya43kf8f1z13ak92vkl6nr5f20k54cphc"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; 1853 + runibic = derive2 { name="runibic"; version="1.16.0"; sha256="0faqxqqgk0x7w87ck7xpjs1ppzd0g2hnxpssf55jq6qq9n4kvvi5"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; 1854 + sRACIPE = derive2 { name="sRACIPE"; version="1.10.0"; sha256="0mqg5f7l299dqc2y2fww21i76lb9685wckrcvjaxg80qsgc1s3r1"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; 1855 + sSeq = derive2 { name="sSeq"; version="1.32.0"; sha256="0b2f66qh9ysdgmvzma62806scmpwz2qblbdy89pqfbyzkqprg9zk"; depends=[caTools RColorBrewer]; }; 1856 + safe = derive2 { name="safe"; version="3.34.0"; sha256="139kaqd6c8sblpki63ncamx8n9dx1n660w7jzik8b6khgwz1jbj6"; depends=[AnnotationDbi Biobase SparseM]; }; 1857 + sagenhaft = derive2 { name="sagenhaft"; version="1.64.0"; sha256="110xg6kagap9795saxmh1dl77r4c2gzmk49rvqjlwqvbifnn4mvw"; depends=[SparseM]; }; 1858 + sampleClassifier = derive2 { name="sampleClassifier"; version="1.18.0"; sha256="1plsyjjbjrjq1mydv19lsv0alq98vr2132c3m9j0w4akvs7zcv6q"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; 1859 + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.4.0"; sha256="14bmz98rhpnkdqxkq67qvzkyld1a56h3y8kvjnhz5hzw8q1aihyd"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; 1860 + sangerseqR = derive2 { name="sangerseqR"; version="1.30.0"; sha256="0j0hzpcsz9z04yf6jp26xscp62slgx4i4i33f6s1ajbgx00sq70n"; depends=[Biostrings shiny]; }; 1861 + sarks = derive2 { name="sarks"; version="1.6.0"; sha256="026px0b7cbfvf7zqcm2p1y00hna1wgpyfr4bkirwrbmskb7f32lp"; depends=[binom Biostrings cluster IRanges rJava]; }; 1862 + satuRn = derive2 { name="satuRn"; version="1.2.0"; sha256="1i2prsjxf6h0ynkcx4g1sj0mpb3v9rm6hwb9ppha2p86ffqxvrjn"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; 1863 + savR = derive2 { name="savR"; version="1.32.0"; sha256="0dwl94j5dm5ngn8lyyc4bd9ihd1nqincvq26najjn6lw0x55ciky"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; 1864 + scAlign = derive2 { name="scAlign"; version="1.8.0"; sha256="10bq2jalmyhw3f2vg1sjrlg5czap9w453aga68vgxbp3j04342sp"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; 1865 + scAnnotatR = derive2 { name="scAnnotatR"; version="1.0.0"; sha256="08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; 1866 + scBFA = derive2 { name="scBFA"; version="1.8.0"; sha256="0fq7c9gd4ybcw9d3gw21hrnw2r94mamiimn2d50c23wdk31rsgy8"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; 1867 + scCB2 = derive2 { name="scCB2"; version="1.4.0"; sha256="1pxfs9k4lfk3bfy9b6hls5dqrhbgc6z9j0ndyw67zhzgzpj333r0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; 1868 + scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; 1869 + scClassify = derive2 { name="scClassify"; version="1.6.0"; sha256="1aln1i29xj1p5gscxnfg0lcva2sr8pyf51r39bpagc83n5df4rw0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; 1870 + scDD = derive2 { name="scDD"; version="1.18.0"; sha256="0gjdjkpkm9zc9hzzb6r2mknl4zyg7s2lgqppmzzhgcnvlmgvm5b5"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; 1871 + scDataviz = derive2 { name="scDataviz"; version="1.4.0"; sha256="10q9xzaq27l1s4n8iavriv83y8sgblp3shkswr9cfks2siyxa27k"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; 1872 + scDblFinder = derive2 { name="scDblFinder"; version="1.8.0"; sha256="0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray igraph MASS Matrix S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; 1873 + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.14.0"; sha256="1yqj75fxvsbdk32z7swwgb9lxx496sxgxv471yvbxzmjwxzigxj1"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; 1874 + scGPS = derive2 { name="scGPS"; version="1.8.0"; sha256="1k7g9lxp1n4ngm8z019p33vmb8y43hpwfvqdh514x1jh1ygcqbfj"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; 1875 + scHOT = derive2 { name="scHOT"; version="1.6.0"; sha256="188qf2039g5jl6vbq1xarzx9n065nb5pqxmkh764q8cz60ic3s2s"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1876 + scMAGeCK = derive2 { name="scMAGeCK"; version="1.6.0"; sha256="1vx90l5d010dp6snasvaymlh16w5law19shdz0fhg3ngkc1v9jg0"; depends=[ggplot2 Seurat]; }; 1877 + scMerge = derive2 { name="scMerge"; version="1.10.0"; sha256="031wlfilcagl3mq14yqybz2z7r0l420p5v8f128f841lmhqclg55"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1878 + scPCA = derive2 { name="scPCA"; version="1.8.0"; sha256="1qgb03c446yv1zkzgiin05vlj7njlz3krvwj183s9y43d95mfny1"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; 1879 + scPipe = derive2 { name="scPipe"; version="1.16.0"; sha256="0ckl6crm5rx53dlbbx0b4bfkllr5krai2bnxq5r5yqffv9p7n6mi"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; 1880 + scReClassify = derive2 { name="scReClassify"; version="1.0.0"; sha256="0v2cz8h18p3q6a437db1z1ca85j7yrpz9sg7418q2hdv74wd645c"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; 1881 + scRecover = derive2 { name="scRecover"; version="1.10.0"; sha256="0x8hlbjhf9jfin075sikc7gpl9qbpppcvhy3rd4cgy1nzq6dqwq1"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; 1882 + scRepertoire = derive2 { name="scRepertoire"; version="1.4.0"; sha256="17il73lv0pxbqaza21i0fg5zh2v3jf7n30nwngi1jqics4l5ahsl"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; 1883 + scShapes = derive2 { name="scShapes"; version="1.0.0"; sha256="0bzbib3y454dmv6ifg65pynr7v07g29r391k8p8v97v53jzdjd38"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; 1884 + scTGIF = derive2 { name="scTGIF"; version="1.8.0"; sha256="0nsi00rbf9qmzyqkvgr4ga4ci4cy558hh4spaab49njs8vz9svvc"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; 1885 + scTHI = derive2 { name="scTHI"; version="1.6.0"; sha256="0szqnwh3z45dq33iyiv7mnh6hbc561b88i0hvxffjfnfk99i34zl"; depends=[BiocParallel Rtsne]; }; 1886 + scTensor = derive2 { name="scTensor"; version="2.4.0"; sha256="07xh07lc2jvi5rb73dbbfynskr6gd7x7amxz3xiqypilnwpg69y2"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; 1887 + scTreeViz = derive2 { name="scTreeViz"; version="1.0.0"; sha256="0m2g4x1gpwh4y4hm708a4nrwqsx9isy1pn84327yzk9f4yn7jmkg"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; 1888 + scanMiR = derive2 { name="scanMiR"; version="1.0.0"; sha256="1yk3l04w76sracwra8r6wam8j45h5hlhgy638wsmnhsnbnc8d923"; depends=[BiocParallel Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges S4Vectors seqLogo stringi]; }; 1889 + scanMiRApp = derive2 { name="scanMiRApp"; version="1.0.0"; sha256="1vdsx4ryjr7ifh9zy9jh05z5rg8b7ffvknqniwqsnlryyskm978h"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard waiter]; }; 1890 + scater = derive2 { name="scater"; version="1.22.0"; sha256="0k4i9pwmwxcr5a40ljl27wriccwn5vc52xy48yjjh8ppl5dbggdg"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; 1891 + scatterHatch = derive2 { name="scatterHatch"; version="1.0.0"; sha256="1ldrfkk0m00xkkg6zm6cd3i3avpnpfxa6mpjrgajwxh3xyip8lh5"; depends=[ggplot2 plyr spatstat_geom]; }; 1892 + scde = derive2 { name="scde"; version="2.22.0"; sha256="1hqpx7j5j36h7fsckdc76lfig9afcm4q7k0cpp0zzivvsi6kvc2b"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; 1893 + scds = derive2 { name="scds"; version="1.10.0"; sha256="1n7nakndvkk26wpriqfysb89npj539xpqnp6j3szxcpd0r6dd37n"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; 1894 + schex = derive2 { name="schex"; version="1.8.0"; sha256="18w36xc11myq2yh086530ga9f841nx7lqaafrh0zyzc6jvi0flql"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; 1895 + scmap = derive2 { name="scmap"; version="1.16.0"; sha256="0kdkp4ys1hq1y1dh539qymji38cfs44kpkhm4wc5na3wgxxq52y8"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1896 + scmeth = derive2 { name="scmeth"; version="1.14.0"; sha256="0j6kyapwivpri92hssy8mk7dnzc19sd9chipkhdwbcmdxzpdx4hw"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; 1897 + scone = derive2 { name="scone"; version="1.18.0"; sha256="1fqlwg195rzpwh35cj941vhmj2plzpn253skig6glr0z2sirr9r1"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; 1898 + scoreInvHap = derive2 { name="scoreInvHap"; version="1.16.0"; sha256="1y8b8yw0d0b65pka31lfcbdr5knvmihx2shcww76613j3vkk1m77"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; 1899 + scp = derive2 { name="scp"; version="1.4.0"; sha256="1jjczmyihdbvrhv7n4qv58jm1wjw09axk6mixr2yd9fkhxkwc2fy"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1900 + scran = derive2 { name="scran"; version="1.22.0"; sha256="1nyvbss4914giwzp5wiw9g4z5b6lr5iprbjrqlg4vpgnf1hz8k7l"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; 1901 + scruff = derive2 { name="scruff"; version="1.12.0"; sha256="133frf2s1r4zcv868q1br74fsssrvjvj4jh0zxfzvv44sp9q7mvp"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; 1902 + scry = derive2 { name="scry"; version="1.6.0"; sha256="1qp40k5l6splpj4gqgsgx07ys63j8gixdycsjzkgmd13l7awhdf2"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; 1903 + scuttle = derive2 { name="scuttle"; version="1.4.0"; sha256="1dbdb6yc6wk01dljy1vy6f0lf44crc5rxxnc4bhjk8i4iljz8467"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; 1904 + sechm = derive2 { name="sechm"; version="1.2.0"; sha256="0b6izkd276d57vxfi7iip26zkvm7dyd1sml9bh5gcfr1k50ylfiv"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; 1905 + segmentSeq = derive2 { name="segmentSeq"; version="2.28.0"; sha256="1lfi8z39d08w8haga622ha6cqfcs6k80v1xg406l0cxz09qmwss2"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; 1906 + segmenter = derive2 { name="segmenter"; version="1.0.0"; sha256="053s5qkqir3rxjxpi11q9vxxrrp5cv7awn2i2ns8p21zsqzvfis4"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; 1907 + selectKSigs = derive2 { name="selectKSigs"; version="1.6.0"; sha256="03c1dm883vdm5cq4v0dp7kbglxvjljxls6hf7rqqaq7xbw6c9l33"; depends=[gtools HiLDA magrittr Rcpp]; }; 1908 + semisup = derive2 { name="semisup"; version="1.18.0"; sha256="0zjpcw04mrxg2c31cwbfiv1kymq9zpfmwwffjhq046fiikvkda51"; depends=[VGAM]; }; 1909 + seq2pathway = derive2 { name="seq2pathway"; version="1.26.0"; sha256="0r780ralqw02871ww4prm73g18wh6nxs0g0cck135kcmp1a9nbwr"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; 1910 + seqCAT = derive2 { name="seqCAT"; version="1.16.0"; sha256="1c63yp16rp1bfgrd6cxycwpgzglqm4hngbcr7gy4myxqqhsbrimi"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; 1911 + seqCNA = derive2 { name="seqCNA"; version="1.40.0"; sha256="1v8j1mm40r67ab5x38jzynrfmmlpfkwv7afrsr3zwcmxr3h2c7i3"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; 1912 + seqLogo = derive2 { name="seqLogo"; version="1.60.0"; sha256="013hwj2lp29nqa8mkvm25aliarg0k725crg4cpsbj0iiskyrs6rl"; depends=[]; }; 1913 + seqPattern = derive2 { name="seqPattern"; version="1.26.0"; sha256="1mik575qaxw9h9qyjn971207pfgbc8p1mx60jrb20jbrrihgg2na"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; 1914 + seqTools = derive2 { name="seqTools"; version="1.28.0"; sha256="1m8pxyq11bq4wz3w4n4ls5wf9ws2b7pazazv1d6icrrr9z3278ma"; depends=[zlibbioc]; }; 1915 + seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; 1916 + seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; 1917 + seqsetvis = derive2 { name="seqsetvis"; version="1.14.0"; sha256="053y3vxn7ndwx21d41k5xf6wki37kxlr4ghvfq1w2f9w7cc59yb7"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; 1918 + sesame = derive2 { name="sesame"; version="1.12.0"; sha256="06cmbbf62h7f3rv1ika6x3cpsd4mghi9wmv5a4gi1fasxh6h84y9"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; 1919 + sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; 1920 + sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; 1921 + shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; 1922 + shinyepico = derive2 { name="shinyepico"; version="1.2.0"; sha256="1bfzvg46j52lmlf3jjbnd14bn6wmmrksh2adhgh436ywqdrnwygd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; 1923 + sigFeature = derive2 { name="sigFeature"; version="1.12.0"; sha256="0xrg1pxygqsbsh9hgnyhakasds9wvj0rix3a7zhhgrix016gy2kg"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; 1924 + sigPathway = derive2 { name="sigPathway"; version="1.62.0"; sha256="1c46m1gbgiygcj8m65h8iwzk3fkp6nynd6rk1f5qdh7kw5ap28f9"; depends=[]; }; 1925 + siggenes = derive2 { name="siggenes"; version="1.68.0"; sha256="1fymp5ci1nwkk5yfj7hli464xqvvlvzf2a5j0w3qkxly9hrymix9"; depends=[Biobase multtest scrime]; }; 1926 + sights = derive2 { name="sights"; version="1.20.0"; sha256="03xfiwbxbj4nbbdd8cwgqb84gsp0zrlqz4qgz22rhjfm1gxg38j9"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; 1927 + signatureSearch = derive2 { name="signatureSearch"; version="1.8.0"; sha256="0vpz446qrdbq4b8rmxjkraffrn2zwx529xs32ddkvfsh3bcgqh05"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; 1928 + signeR = derive2 { name="signeR"; version="1.20.0"; sha256="1wsh5ik046baq0bsdy5i8f6vf10x2xyxqkmixp2f81nk0cwxxq1y"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; 1929 + sigsquared = derive2 { name="sigsquared"; version="1.26.0"; sha256="1l2p7psmaxff8b63mk59492dr4s0pmr2lnjp32gqs0a7g3s8ry9f"; depends=[Biobase survival]; }; 1930 + similaRpeak = derive2 { name="similaRpeak"; version="1.26.0"; sha256="19d4qfk2qx5jmrfyr929lfwfa9a4b1n65aiclqhfiz9nwh2i6zgf"; depends=[R6]; }; 1931 + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.4.0"; sha256="05d9yjd8s7q1q78qmnx5xfrz9ppswc2cpfmjj47d338w783lwk98"; depends=[AnnotationDbi BiocGenerics circlize clue cluster ComplexHeatmap digest GetoptLong GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; 1932 + sincell = derive2 { name="sincell"; version="1.26.0"; sha256="0yc6a90pqvs9yrhd6vllbdakrq1vly500x2kv68yxk2lzj4magwp"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; 1933 + singleCellTK = derive2 { name="singleCellTK"; version="2.4.0"; sha256="1a3j012jgysfbrknv1pp1az0zsk48yj1sjcjjchakl6lm7anzvhz"; depends=[AnnotationDbi ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly R_utils RColorBrewer reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SummarizedExperiment sva TENxPBMCData tibble tximport VAM withr yaml zinbwave]; }; 1934 + singscore = derive2 { name="singscore"; version="1.14.0"; sha256="1mmp0sgx684d1yxpminllzb6pnl66jlrqhxifvv7g5iivqqsrm2p"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; 1935 + sitadela = derive2 { name="sitadela"; version="1.2.0"; sha256="14r07kxj0fy1i2zmm1v8i7cwx5ff14xlmg5cdrjyzi6zws09vdp8"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; 1936 + sitePath = derive2 { name="sitePath"; version="1.10.0"; sha256="063nry7xxnic984qm29axki5rrp2dmp7kgdcjkvh8bi6y41a58sj"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; 1937 + sizepower = derive2 { name="sizepower"; version="1.64.0"; sha256="1jcv4hy4gq5javqvdla122d36m3gfpwwa5qv5d21fh2s90ycm3rm"; depends=[]; }; 1938 + skewr = derive2 { name="skewr"; version="1.26.0"; sha256="10mfb1yklns9zhy3p9gxxdk3gihlszynilb8b20gb7522yrd124x"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; 1939 + slalom = derive2 { name="slalom"; version="1.16.0"; sha256="130qqbm63iwymwk0lwlp8sns62853l1fabij7iy30ax8hgi681kc"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; 1940 + slingshot = derive2 { name="slingshot"; version="2.2.0"; sha256="081kp9b0lpw2xq9xvd2kykqqrqcj322mp7xa44xc3kf0nzsivqfa"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; 1941 + slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; 1942 + snapCGH = derive2 { name="snapCGH"; version="1.64.0"; sha256="0awvdv4a8ranhvk2an28lnpf8ygsxczg8bgx75fsa4xprp2ij31r"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; 1943 + snapcount = derive2 { name="snapcount"; version="1.6.0"; sha256="0maq6s85h1cx03xp9a89gsq8hd9mgx36q384x0hgmsd1lgkm942d"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; 1944 + snifter = derive2 { name="snifter"; version="1.4.0"; sha256="05fxd9d4qyn6qhnh4kwchr5dwb5d5hzy3yrkxszbnps1mnqfhyz9"; depends=[assertthat basilisk irlba reticulate]; }; 1945 + snm = derive2 { name="snm"; version="1.42.0"; sha256="03bpbsm43pv54mwsklyyjg3g17yflnxcza9bnbkbbbr6aicwihnb"; depends=[corpcor lme4]; }; 1946 + snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; 1947 + soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1948 + sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; 1949 + sparrow = derive2 { name="sparrow"; version="1.0.0"; sha256="1rn4mq2hkpn1902iy20vz7npqjjdzglmx0al3r98l3sshh8pqnxc"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; 1950 + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; }; 1951 + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; 1952 + sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; }; 1953 + spatialDE = derive2 { name="spatialDE"; version="1.0.0"; sha256="01dqrs8a23b0j5a0zk31g1ld5783dd6fsjiaj1vgc767mjwh0vsx"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; 1954 + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.0.0"; sha256="0a67dk5jvww8lrjqq8yxbqnm2lasjhypi1k16qa7gwd2x84phghf"; depends=[av BiocFileCache data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick plotly rappdirs reshape2 rols rsvg S4Vectors shiny shinydashboard SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; 1955 + spatzie = derive2 { name="spatzie"; version="1.0.0"; sha256="1k88ibhm8k19i1jb1xsp6xqva8gdmgcp6gqmza7snh2hk5a4r9ll"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; 1956 + specL = derive2 { name="specL"; version="1.28.0"; sha256="1fsv1vi7wghrn6xgkdfsr5c53jv1kfpxygzpvnc8pa37l6jfzdfg"; depends=[DBI protViz RSQLite seqinr]; }; 1957 + spicyR = derive2 { name="spicyR"; version="1.6.0"; sha256="1a7nidfa0vq7qbs5j1yl429q1adic8p3pagrvw3362b59j36ryxx"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; 1958 + spikeLI = derive2 { name="spikeLI"; version="2.54.0"; sha256="1ndxvamn2q6ad86dfql1qa7c87xfg8q3zk6f33ip458ikmx16h3f"; depends=[]; }; 1959 + spiky = derive2 { name="spiky"; version="1.0.0"; sha256="0r8n6icjkhwaq395ikcw64wgks89s84a97xc8lwgrb4lkmnlkgyj"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; 1960 + spkTools = derive2 { name="spkTools"; version="1.50.0"; sha256="1fbh8lfhl3j7dgx7my3ajjfvzfl0x5rm3m0hszm9dk7zvn6zl67x"; depends=[Biobase gtools RColorBrewer]; }; 1961 + splatter = derive2 { name="splatter"; version="1.18.0"; sha256="0wxg4s7xragzd0ixav95jvc1ydizvnszgcvrzsn2fn9hmdi8bc2q"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; 1962 + splineTimeR = derive2 { name="splineTimeR"; version="1.22.0"; sha256="0pbfflicb2zpiddslivyh9i2vly6h8jfbmpm38ljijzshmsvra6v"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; 1963 + splots = derive2 { name="splots"; version="1.60.0"; sha256="0ng1shqpjmgbfs4hlcfncq4ipl59a9xwv42h7zcc45hzm7013fq9"; depends=[RColorBrewer]; }; 1964 + spqn = derive2 { name="spqn"; version="1.6.0"; sha256="081b87w4gsrqp9ny9gqc85g4nm17kxrs2bagxgja280hf7ry2f08"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; 1965 + srnadiff = derive2 { name="srnadiff"; version="1.14.0"; sha256="075yvmdv4403za1cp0agcjq1lbnk3wa5b9cx2hjra1i26sgvvfxp"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; 1966 + ssPATHS = derive2 { name="ssPATHS"; version="1.8.0"; sha256="1xl6vj0h0mh7xxyw8gfyb02zq6mvdi7yy6ssi50p1aq9ynlvpzwn"; depends=[dml MESS ROCR SummarizedExperiment]; }; 1967 + sscore = derive2 { name="sscore"; version="1.66.0"; sha256="0gmq40iikz71wrw3kppr14xmjyb1fg2kxcsldwqs3nhmrbcsmpxq"; depends=[affy affyio]; }; 1968 + sscu = derive2 { name="sscu"; version="2.24.0"; sha256="0ffcb5z1rwa2jmvdq1k9mq356fxh13vjrxmd7jbyz22sia02q2n0"; depends=[BiocGenerics Biostrings seqinr]; }; 1969 + ssize = derive2 { name="ssize"; version="1.68.0"; sha256="1q0wgqxja6fpnf1awwq25dh891mlsrszb2lizwzbkw8nfj4zx4v8"; depends=[gdata xtable]; }; 1970 + ssrch = derive2 { name="ssrch"; version="1.10.0"; sha256="0mvi90gs74fzyy08bssy6x3skcwwxyixn7fg31h4fd2iii1rsf9i"; depends=[DT shiny]; }; 1971 + ssviz = derive2 { name="ssviz"; version="1.28.0"; sha256="1jhzvz9scacwxh4dlqv4x852aym5b6yjk3nam6hphinzpsjvjhjd"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; 1972 + staRank = derive2 { name="staRank"; version="1.36.0"; sha256="017z547lmj0sid27wdkw999i9b1dha20ql8dhi47s0yrivx2qzc8"; depends=[cellHTS2]; }; 1973 + stageR = derive2 { name="stageR"; version="1.16.0"; sha256="0vpx0v04hgkhzi0bm7ipnb9xr37n5wvnnr45lljgni8pwabfkf6y"; depends=[SummarizedExperiment]; }; 1974 + statTarget = derive2 { name="statTarget"; version="1.24.0"; sha256="07bz7sna144x6fwp0m5cqjrr5h1gic841pkv24dgxxkzq0arzcwm"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; 1975 + stepNorm = derive2 { name="stepNorm"; version="1.66.0"; sha256="1v5a5zcczd65kzmpkjhr793z74f1758mbql0izwavc609ai5a241"; depends=[marray MASS]; }; 1976 + strandCheckR = derive2 { name="strandCheckR"; version="1.12.0"; sha256="1j7h8psn90zdz78j2115gwpdikkvpcfbv8izpwazawgl59byb4w8"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 1977 + struct = derive2 { name="struct"; version="1.6.0"; sha256="1vnszdh24f8hh2kcpxr9whbpbws3qnm0zldjg5pdvkfvnsq6fa00"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; 1978 + structToolbox = derive2 { name="structToolbox"; version="1.6.0"; sha256="06b29kxi0gsai959vpqaknpccb20r7ij1dhj73nwcy9a0lc92n0z"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; 1979 + subSeq = derive2 { name="subSeq"; version="1.24.0"; sha256="1yyj74cff2zjl7i5ms44805jb65f1xbd0f9yh084n4f3qn0vp7jh"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; 1980 + supersigs = derive2 { name="supersigs"; version="1.2.0"; sha256="0g622ci7761nk8baxi3w4m9qfalv2l97irkrpjsglmqf3rnc1h47"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; 1981 + supraHex = derive2 { name="supraHex"; version="1.32.0"; sha256="00z4dir261xr5v2ajs8vifhyy35agcqjph9jlwg8q9f3s2n89c6x"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; 1982 + surfaltr = derive2 { name="surfaltr"; version="1.0.0"; sha256="072hm8mcv0cyjmpss8jq84g4igd8m0xvqjj4n8ys9i54f7ar66zh"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; 1983 + survcomp = derive2 { name="survcomp"; version="1.44.0"; sha256="0d2zc3si1cfmbknx61n229nd042kxgphf089zgbq46drav2rbqqb"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; 1984 + survtype = derive2 { name="survtype"; version="1.10.0"; sha256="0m4y3sc4d74590m78sl61xzl2lg5ik2jxlasnkcg9gv4cqpi4nl5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; 1985 + sva = derive2 { name="sva"; version="3.42.0"; sha256="0clzid9di2qfgc5bvnqx312k3inj1lc599ckqkllvr894wxb7mdj"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; 1986 + svaNUMT = derive2 { name="svaNUMT"; version="1.0.0"; sha256="1y090djhxmpb8rb74zy4sjbczh3cnfjx43g59f3as0n2h2knba0g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; 1987 + svaRetro = derive2 { name="svaRetro"; version="1.0.0"; sha256="0ah4qg0cy71sg0g7wh40lslj9xrbk53l1kc63mrg9ixwysiqrq8c"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; 1988 + swfdr = derive2 { name="swfdr"; version="1.20.0"; sha256="1nhqvifn9ghfvxgcf0qzm5q3i1ar75ghly88sr6pwn8401rbbm6n"; depends=[]; }; 1989 + switchBox = derive2 { name="switchBox"; version="1.30.0"; sha256="09z9wi8yzjq49rjmn707a1kvf7c203lbxcnc7znwhy7lv51svj67"; depends=[gplots pROC]; }; 1990 + switchde = derive2 { name="switchde"; version="1.20.0"; sha256="1n815zwj5znddgc3pz87089q8bvb14n2g61zfang8d8pna4zbf7v"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; 1991 + synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; 1992 + synergyfinder = derive2 { name="synergyfinder"; version="3.2.2"; sha256="0kpvp0lamchbgs4p34pbq14y3zrmgk0pgil0qhsrm3kv1pizk1w8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; 1993 + synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; 1994 + systemPipeR = derive2 { name="systemPipeR"; version="2.0.0"; sha256="0kibr47z7ml13hpl955qcr4wp2z4nq7gjiinyk30wivrwrng5sg1"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; 1995 + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; 1996 + systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; 1997 + tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; 1998 + tRNA = derive2 { name="tRNA"; version="1.12.0"; sha256="1sgmj7vcghssdxirxh1p059b8827gdckd9hplibs0a0chq21glcr"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; 1999 + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.12.0"; sha256="1xkbdyf5c7fk0hbp9jql33mh4dpffvyjm8binh2h9g109jbyshv7"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; 2000 + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.14.0"; sha256="1qfrbqpv0wk3hbvdwy3fvgns2sadrldij80h060miwbp6ilrf7ji"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; 2001 + tRanslatome = derive2 { name="tRanslatome"; version="1.32.0"; sha256="1ybq23hjad913dq291i2w198xkgflgzkhqh9r5azak3d6pbhnyzf"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; 2002 + tanggle = derive2 { name="tanggle"; version="1.0.0"; sha256="0p1gqm28syrs0jd339iy48bcg3zsrzvcnydj3a36hvf2lihahiq1"; depends=[ape ggplot2 ggtree phangorn]; }; 2003 + target = derive2 { name="target"; version="1.8.0"; sha256="1qrrvssxv06i4cchlz8kc3xm7iyj4d8958161qda84ryh49zf6pz"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; 2004 + tenXplore = derive2 { name="tenXplore"; version="1.16.0"; sha256="10wzragd76zvp2yjsxvsv08g1ss1dhfj38k8wcybjls4pssn5m7c"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; 2005 + ternarynet = derive2 { name="ternarynet"; version="1.38.0"; sha256="1zj5q5g2dhq4jfr3rgi448hlgvdnbb74caylq7n5k771xm10dmn9"; depends=[BiocParallel igraph]; }; 2006 + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.4.0"; sha256="06552iankswvvnwg8ba330iqg0xg8n55fxsgl2llw9xscn52lswb"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect]; }; 2007 + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.4.1"; sha256="0q54bpb8xzw3ln4sxvpznkhx40lprcmnm62g0211xk8vmm6pxmf3"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; 2008 + tidybulk = derive2 { name="tidybulk"; version="1.6.1"; sha256="0fbipc79csw4g359imj4j674j49960kxgcf20ca6gki4996ng0l2"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; 2009 + tigre = derive2 { name="tigre"; version="1.48.0"; sha256="02d5khnl5klvg4r4h3nds4cs7713d4fp4lysxx34wfr62ps363az"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; 2010 + tilingArray = derive2 { name="tilingArray"; version="1.72.0"; sha256="0d7f1g162js5arq989qihs1nylf6q7fgbjy1gwy57ms8aswfna1r"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; 2011 + timeOmics = derive2 { name="timeOmics"; version="1.6.0"; sha256="0z7p8bgcxz56wg7cya5zz9vq9ag3lj19jy4k7l8b8gh1j9cl7ph2"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; 2012 + timecourse = derive2 { name="timecourse"; version="1.66.0"; sha256="0kk47zcgjxsgx9y456yx5afx2wpy8r5flw8bn96z7jfp8nn68nk8"; depends=[Biobase limma marray MASS]; }; 2013 + timescape = derive2 { name="timescape"; version="1.18.0"; sha256="0v3j0jybyin5i52mp2j3kvqiq3l57gjggq234g3ylywhskndrz9y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; 2014 + tkWidgets = derive2 { name="tkWidgets"; version="1.72.0"; sha256="1wlvrx998hqnfrkyvyrn775ni91pvc3adxp8hpv61qrh6aih9yvf"; depends=[DynDoc widgetTools]; }; 2015 + tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; 2016 + tomoda = derive2 { name="tomoda"; version="1.4.0"; sha256="1fy2vzahz8m3syx4rimdnkhifnjbl504abq3h49vslng0pr7166d"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; 2017 + topGO = derive2 { name="topGO"; version="2.46.0"; sha256="01vykf8bzwm2k7cfj09r6il6qaycjy10wpaxbn13f21p66r5nlm2"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; 2018 + topconfects = derive2 { name="topconfects"; version="1.10.0"; sha256="15l7fx8vajxw8sgprihy0k1gwkp63af9jav6w1hyjij23brlmd1a"; depends=[assertthat ggplot2]; }; 2019 + topdownr = derive2 { name="topdownr"; version="1.16.0"; sha256="1slnvqj0grdkif5mjyw2zg6fddnr45gz64b1ar2h6pb9blhsyi0m"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; 2020 + trackViewer = derive2 { name="trackViewer"; version="1.30.0"; sha256="0klfwndai55myrv7j6bp85bp9wg57z1rs2xxcrh5a11y1lx1x4ph"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; 2021 + tracktables = derive2 { name="tracktables"; version="1.28.0"; sha256="1ymz4gz73wbi3ansbf346fnp51nxq6v68ax0mp7y5vqf51jsvwwx"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; 2022 + tradeSeq = derive2 { name="tradeSeq"; version="1.8.0"; sha256="1s5anbb38gi5sfkxy19zpvkj8d0ij7m6cd0z4gmx4f5pf7pz0m3j"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; 2023 + transcriptR = derive2 { name="transcriptR"; version="1.22.0"; sha256="1p5l2z3szx3qh02x7r81ajl7yc5wqsri6q6pzw83livmalcli5yy"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; 2024 + transcriptogramer = derive2 { name="transcriptogramer"; version="1.16.0"; sha256="15kb8b99bk1an4gkxc3fik0kqfvvp93rh2kb5vrw6zl5s1vqhpjk"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; 2025 + transformGamPoi = derive2 { name="transformGamPoi"; version="1.0.0"; sha256="0fxf5iin0mqmwshm9vgcp2m7832jw11jlcis33saz1b40clajr22"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics SummarizedExperiment]; }; 2026 + transite = derive2 { name="transite"; version="1.12.0"; sha256="1w6nn720jrch4abm1z0hvpkniklq15n3ai6c0sxg11q6nkx4j028"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; 2027 + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.4.0"; sha256="1jbk224x4nzlzd19ydy8bly4fs6l7qx7rk07i4zd4l6h622nz78k"; depends=[dplyr KEGGREST RCy3]; }; 2028 + traseR = derive2 { name="traseR"; version="1.24.0"; sha256="0ch8hamhjjdcpi95gjqybzmk8vgx2j70gnlfiswvp8bjwf15hlfp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; 2029 + traviz = derive2 { name="traviz"; version="1.0.0"; sha256="03w4jpx5vp4cf3g77cks6dp8dkl66bbjsixr4j25xc3xr26g6kw0"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; 2030 + treeio = derive2 { name="treeio"; version="1.18.0"; sha256="03gz378qrp6b9fcriqanfnphibqv4bxhvz48rigzkidkzz71wfaj"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; 2031 + treekoR = derive2 { name="treekoR"; version="1.2.0"; sha256="1xrq8j7cr6s4a9171xqm1iw3a1dzdnmgyy68knilr42nxak064nn"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; 2032 + trena = derive2 { name="trena"; version="1.16.0"; sha256="1kz68z0dixiiryd62diddq352h8sx6r15flxm7h715abcniniyjn"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; 2033 + tricycle = derive2 { name="tricycle"; version="1.2.0"; sha256="1jcvbzpd5cfyyy6n6kvi0biyrv4m86z5fdmhjkg5wm4dm61r5n9q"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; 2034 + trigger = derive2 { name="trigger"; version="1.40.0"; sha256="0irlxzy6vhp2q3lr9b4qnv7w43c3sdh7ali3rw1fgfpg29i4jc1f"; depends=[corpcor qtl qvalue sva]; }; 2035 + trio = derive2 { name="trio"; version="3.32.0"; sha256="16bnh1q53b2pkw4v7why5b1srl39zw6iza34yxynv34b8529sl46"; depends=[LogicReg siggenes survival]; }; 2036 + triplex = derive2 { name="triplex"; version="1.34.0"; sha256="0niyiafps242y9gnrc85ncb28c1q9ny1b20la53397h5w46sqq6i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; 2037 + tripr = derive2 { name="tripr"; version="1.0.0"; sha256="0lcyjqn2my782hq8bmab08hpp0sgaz3c6wbcywn3pidcc0zqr56p"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; 2038 + tscR = derive2 { name="tscR"; version="1.6.0"; sha256="0mbyl00mylw0cvlbh93vxbc86y7fgn6n0zw7k0ix9cx7dx7kjwfm"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; 2039 + tspair = derive2 { name="tspair"; version="1.52.0"; sha256="0pm1rdiiza2737nar790zi2b37n25gpdxbg8ljg3a84mlji5jsws"; depends=[Biobase]; }; 2040 + ttgsea = derive2 { name="ttgsea"; version="1.2.0"; sha256="05r26pqd37acjwl1yj25i4whprlmd37sdah2xwin19nmjqx674dv"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; 2041 + tweeDEseq = derive2 { name="tweeDEseq"; version="1.40.0"; sha256="0xqd0i5d5q5fm58gxpxac24zpqpyj5dgab0kziwyn8pfyp1w5s4h"; depends=[cqn edgeR limma MASS]; }; 2042 + twilight = derive2 { name="twilight"; version="1.70.0"; sha256="1fy01p3fgajc2jhc286b51mcynj0lrzv3ln21kyj981qk2c390qq"; depends=[Biobase]; }; 2043 + twoddpcr = derive2 { name="twoddpcr"; version="1.18.0"; sha256="0b8r7dvqjlswkpfy141kibldj9aw3w8wxw0swmcgxkivml4gz1sw"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; 2044 + txcutr = derive2 { name="txcutr"; version="1.0.0"; sha256="0vzdbn75d9hvb4ni5ra7z4s52rbbl3sdi6kpidy421l3sb5clbsj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; 2045 + tximeta = derive2 { name="tximeta"; version="1.12.0"; sha256="03fbz6pka7bcbhd0bblgckyxsqhzp4n8qp2dcpdb3sr01lyw4bc5"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; 2046 + tximport = derive2 { name="tximport"; version="1.22.0"; sha256="0w6pr7s9j8l4fpn3przbfrsyxvzxc3ficgsychvhq3bami9np8g4"; depends=[]; }; 2047 + uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; 2048 + uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; 2049 + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.30.0"; sha256="0kw26bm2yyna38q5r4zb2alpa3j4gx7v970419mnjlif4g0hmggk"; depends=[BiocGenerics HTqPCR]; }; 2050 + universalmotif = derive2 { name="universalmotif"; version="1.12.1"; sha256="0d6zrwbc4i2npl29idm1icwa62wdx47z9s8yx7k662v3qagwpj16"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; 2051 + variancePartition = derive2 { name="variancePartition"; version="1.24.0"; sha256="0f5y61dpzwmr8v7npim18zvxa8n49rbzclb9j72haba0px6ibhvw"; depends=[Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress reshape2 rlang scales]; }; 2052 + vbmp = derive2 { name="vbmp"; version="1.62.0"; sha256="0yavhi3n9nlgq2s0xvglsnfi9yxdl0di8vs30h9p6a0hh3d1c8ql"; depends=[]; }; 2053 + velociraptor = derive2 { name="velociraptor"; version="1.4.0"; sha256="16v1qxl8z5pr3ygvby5n2klw0wm468fbsch1b9a67il8bjxslg0j"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; 2054 + veloviz = derive2 { name="veloviz"; version="1.0.0"; sha256="0d7cfvr7vapz76r6j51bz3hccfhgmn2m2bvnr132p0kx3y18skqx"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; 2055 + vidger = derive2 { name="vidger"; version="1.14.0"; sha256="1xcb1v0bvgvwk2vr7zhqa05fml5gfr4dbv5l92z53sqamrb1wdkf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; 2056 + viper = derive2 { name="viper"; version="1.28.0"; sha256="03k2cib485rn9spz6qfbgfsmrmlrr0a19dg79hsjziplzsq3jqj7"; depends=[Biobase e1071 KernSmooth mixtools]; }; 2057 + vissE = derive2 { name="vissE"; version="1.2.2"; sha256="0dz7rgdr8lbg2nl66k14pfza8pwabzvsfnw3n7lb24z669mifvhd"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; 2058 + vsn = derive2 { name="vsn"; version="3.62.0"; sha256="03p2wdjbjnrn1ddyz0fbn04mdxpsmv83qhh3apj6azshl0bs1j2x"; depends=[affy Biobase ggplot2 lattice limma]; }; 2059 + vtpnet = derive2 { name="vtpnet"; version="0.34.0"; sha256="1id1cp0ybpz3vmcgfxi7ibz7smqdlmamggyi7awmw3nx4kck6nx3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; 2060 + vulcan = derive2 { name="vulcan"; version="1.16.0"; sha256="0dh3sr75xsax7610c6rgvsx23bnx79h5krx1ay62nnvpsakqjdr4"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; 2061 + waddR = derive2 { name="waddR"; version="1.8.0"; sha256="0inm2n14jwv9y34fs0lkv75ayl75i43s99d36jnkgnppfamkbc8b"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; 2062 + wateRmelon = derive2 { name="wateRmelon"; version="2.0.0"; sha256="1kzkg3cnm5pcs6blpw1qn7na6z3kar93v67680wsxa6qxxdiggk3"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; 2063 + wavClusteR = derive2 { name="wavClusteR"; version="2.28.0"; sha256="1a1zhckrgq5yl51acj5piyh2hq70q6hhpym4cawzdssxhcbq70bk"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; 2064 + weaver = derive2 { name="weaver"; version="1.60.0"; sha256="024yqr344zdahliwnv4xg6jq7hcvgvq7y6w2yl3d4iqhi4c84hg7"; depends=[codetools digest]; }; 2065 + webbioc = derive2 { name="webbioc"; version="1.66.0"; sha256="1r3rjvfhqbbzdhlslnc86kr2iip3xgvr81zpvcr8xv9mysgrln17"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; 2066 + weitrix = derive2 { name="weitrix"; version="1.6.0"; sha256="0aasilfzxg0npb1x2bwkjw6lhigypmqjjpw38qrp7pz1r0w5nmwa"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; 2067 + widgetTools = derive2 { name="widgetTools"; version="1.72.0"; sha256="0jajfh78116wjfwbmzfvcbxswai4jj9ypzmfhs5j5iypaf8zff8j"; depends=[]; }; 2068 + wiggleplotr = derive2 { name="wiggleplotr"; version="1.18.0"; sha256="01y1rbmxjza7qx3q33k0r241if69hzkx9plgmj59wyji22lm7syi"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; 2069 + wpm = derive2 { name="wpm"; version="1.4.0"; sha256="1jcidw17bhf42ivywkcqgsd0i93mq32gishnz7h9syvv25qcbrsy"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; 2070 + wppi = derive2 { name="wppi"; version="1.2.0"; sha256="1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; 2071 + xcms = derive2 { name="xcms"; version="3.16.0"; sha256="0m6w68ndf2a4k148pbb0bbbgq57akzqgi9nf7k6ngkk22j3m7m95"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; 2072 + xmapbridge = derive2 { name="xmapbridge"; version="1.52.0"; sha256="1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"; depends=[]; }; 2073 + yamss = derive2 { name="yamss"; version="1.20.0"; sha256="141hbryifm6na5shjyrbjwwksqnl75kqp1m2zl03l9sjqm0kapab"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; 2074 + yarn = derive2 { name="yarn"; version="1.20.0"; sha256="0nk4qzrwjiv8q39lgil9x25bm3gpzrnhd37d7754kpxhs2fsmw9d"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; 2075 + zFPKM = derive2 { name="zFPKM"; version="1.16.0"; sha256="0fk05vrmyyrhmkwi06lsi553mlpqj3fgwhk1kygz83iqv5z2vfw9"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; 2076 + zellkonverter = derive2 { name="zellkonverter"; version="1.4.0"; sha256="1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; 2077 + zinbwave = derive2 { name="zinbwave"; version="1.16.0"; sha256="05w95bnq63a339d8x4932k81ycqf825s3qwn98vr52v5g2hv46fq"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; 2078 + zlibbioc = derive2 { name="zlibbioc"; version="1.40.0"; sha256="0a0dl7z58zxdj6938zbxixphgljj1giylk1nd05bb7qsccmp0xhj"; depends=[]; }; 2079 + ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; 2080 + CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; 1995 2081 EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; 2082 + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; 2083 + MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; 2084 + SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; 2085 + affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; 2086 + methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; 1996 2087 }
+414 -351
pkgs/development/r-modules/cran-packages.nix
··· 4 4 # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix 5 5 6 6 { self, derive }: 7 - let derive2 = derive { snapshot = "2021-10-21"; }; 7 + let derive2 = derive { snapshot = "2021-11-01"; }; 8 8 in with self; { 9 9 A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; 10 10 AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; ··· 78 78 ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; 79 79 AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; 80 80 APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; 81 - APCI = derive2 { name="APCI"; version="1.0.2"; sha256="1d6a9445sih206vhhijkfdhbwrw3ps4ny5y3b0zv6ami0mig0mgx"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; 81 + APCI = derive2 { name="APCI"; version="1.0.3"; sha256="1fdv9zpc04i39zw8mg38mirh2nb8nkyf17s12fm83jp6x0jf7vbc"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; 82 82 APCanalysis = derive2 { name="APCanalysis"; version="1.0"; sha256="11snn5i8zyjpzf58ica762fpp14v7x5h8a8iwx4s4v81pgvlx862"; depends=[]; }; 83 83 APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; 84 84 APIS = derive2 { name="APIS"; version="1.0.1"; sha256="1af82mixamllly7v1jfvn1anpm1pafkv5mshwp6nmc27vaq201z5"; depends=[doParallel foreach ggplot2 gridExtra]; }; ··· 101 101 ARPobservation = derive2 { name="ARPobservation"; version="1.2.1"; sha256="1gpq5wl3mwp4hi49h1g6nnizzpnfc19pv8chdyhv8y5sraq1k2ag"; depends=[]; }; 102 102 ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; 103 103 ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; 104 - ARTofR = derive2 { name="ARTofR"; version="0.2.3"; sha256="1ybmad3scdx8rmdzvzzglc1dkv36f12fbb6aaqd6c9xfzcra6ydj"; depends=[bannerCommenter clipr]; }; 104 + ARTofR = derive2 { name="ARTofR"; version="0.3.3"; sha256="1ha76ilbbl8bfls8sbk98k6qysymy3jphmkn51j9sr60ghsdlxg4"; depends=[bannerCommenter clipr]; }; 105 105 ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; 106 106 ARpLMEC = derive2 { name="ARpLMEC"; version="2.1"; sha256="0fj5mcaqpvgcwb6zp8yc5747clm6js99r3lqx5d3536w6k0f51r0"; depends=[gmm lmec MASS Matrix mnormt MomTrunc mvtnorm numDeriv sandwich tmvtnorm TTmoment]; }; 107 107 ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; ··· 112 112 ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; }; 113 113 ASSOCShiny = derive2 { name="ASSOCShiny"; version="0.1.0"; sha256="1g1ba9d5ywd3gbwjb36xnms8l15dg1vwc6r0nsb5adhpb602xsw1"; depends=[arules arulesViz dplyr plotly rmarkdown shiny shinyMatrix]; }; 114 114 AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; 115 - ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.54"; sha256="1rbsydrk7ccwj1p80sldwxzlvbki0n3znlchrh47l6w3pk5kvc72"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; 115 + ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.55"; sha256="0p5n3hgx3iipssn7c81xn4zb4s1sz4mbr7bhslymblj9c8hy7vwm"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; 116 116 ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; 117 117 ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; 118 118 ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; ··· 160 160 AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; 161 161 AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; 162 162 AlleleShift = derive2 { name="AlleleShift"; version="1.0-2"; sha256="0pmjh5nq67fxnwlszp5rlmnmzg4gdjkr9dzaz6b0p7vh2cfy9m45"; depends=[adegenet BiodiversityR vegan]; }; 163 - AlphaPart = derive2 { name="AlphaPart"; version="0.8.3"; sha256="024h9vywmqga9kgd8h64c706g4j3f6i6vm3zl7q23m9i5a4wisz8"; depends=[directlabels gdata ggplot2 pedigree Rcpp reshape]; }; 163 + AlphaPart = derive2 { name="AlphaPart"; version="0.8.4"; sha256="177208h034xzjkn965si83v92qaniayhdl1bpvrvmp6q8anmywp4"; depends=[directlabels gdata ggplot2 pedigree Rcpp reshape]; }; 164 164 AlphaSimR = derive2 { name="AlphaSimR"; version="1.0.4"; sha256="115rn03dgpgcb5h9f2f5rz7kmlrfqdr0xdw7l9f4v7wkbdmr9h0l"; depends=[BH R6 Rcpp RcppArmadillo]; }; 165 165 Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; 166 166 AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; ··· 187 187 AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; 188 188 AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; 189 189 Anthropometry = derive2 { name="Anthropometry"; version="1.16"; sha256="0iqlmp9vig4qdavs37kislqxwhk0c0pgsn1kwz3mm75nylxmpbp0"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; 190 - AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.4"; sha256="0xa1ypjffslxhclnxnkl5k3a1nqrcqq8wdgcb5j7kvg0a7jw0blj"; depends=[openxlsx]; }; 190 + AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.18"; sha256="000pxpkxwfaynmlr8xpbnkck2q61ym281ykxq88mrscqgyimp40k"; depends=[DescTools openxlsx]; }; 191 191 Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; 192 192 AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; 193 193 ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; ··· 231 231 AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.5"; sha256="15x0mkgn7pq2yk05l5vwvd744gxkz28nb5azc1yz502ayr1s6hnm"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; }; 232 232 AzureKusto = derive2 { name="AzureKusto"; version="1.0.6"; sha256="02wj1nzbs9l6aapk94p89gahbffmk3gy80l57bd1l0afpw0y3jr8"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; }; 233 233 AzureQstor = derive2 { name="AzureQstor"; version="1.0.1"; sha256="1z7j8kakiarpw3q2rii7gl9zc2nsb49nzs1nxg1hgfyvcdhw2fcg"; depends=[AzureRMR AzureStor httr openssl]; }; 234 - AzureRMR = derive2 { name="AzureRMR"; version="2.4.2"; sha256="0vjsbr56vl6j5mm6sbf127k06cmb9adbzapp5njl63181c11nx6g"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; 235 - AzureStor = derive2 { name="AzureStor"; version="3.5.1"; sha256="13xygdfmvr41ckrlw278nayn7lkx2w9f398qzj342rffnqlqz1i0"; depends=[AzureRMR httr mime openssl R6 xml2]; }; 234 + AzureRMR = derive2 { name="AzureRMR"; version="2.4.3"; sha256="076hgxx2d6jf24fhysxk3mnp22ns8i6cqp3mzd64rafl1clqy3l1"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; 235 + AzureStor = derive2 { name="AzureStor"; version="3.5.2"; sha256="0c1pkzq62nk2nybhp60nvy6vjwgzcxyraw6fcldwqylqg1y4104h"; depends=[AzureRMR httr mime openssl R6 vctrs xml2]; }; 236 236 AzureTableStor = derive2 { name="AzureTableStor"; version="1.0.0"; sha256="0xrfpi9psn1h21g4mvcbqsjav56s8cha381vsjkp1swilrxhmk5l"; depends=[AzureRMR AzureStor httr jsonlite openssl uuid vctrs]; }; 237 237 AzureVM = derive2 { name="AzureVM"; version="2.2.2"; sha256="0766a4y17qgq3vgb398n6zn8sdjrv65gpvrnr9b9g89zdsdy9fc4"; depends=[AzureRMR jsonlite R6]; }; 238 238 AzureVMmetadata = derive2 { name="AzureVMmetadata"; version="1.0.1"; sha256="15ghijzva6qzq2riq8ci4bh6ssknnp15yyy1fql0k4878wkf7vs0"; depends=[httr openssl]; }; ··· 272 272 BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; 273 273 BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; 274 274 BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; 275 - BCEA = derive2 { name="BCEA"; version="2.3-1.1"; sha256="0ppjcbcapmg6j5gdalw1j86w50xwaanvhld9zpzp5fvj8b7f016b"; depends=[dplyr MASS rlang]; }; 275 + BCEA = derive2 { name="BCEA"; version="2.4.1"; sha256="1x5hyl09ky7jgqvqfnf8sx6s8ncglbhk2bwj8mvhl02kgx4n42k6"; depends=[dplyr ggplot2 GrassmannOptim gridExtra MASS purrr reshape2 rlang]; }; 276 276 BCEE = derive2 { name="BCEE"; version="1.3.0"; sha256="19sg84qw44pa7dmr2l656zv988cj6ap6069l53vza5ynqswckbw2"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; 277 277 BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; 278 278 BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; ··· 293 293 BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; 294 294 BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; 295 295 BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; 296 - BET = derive2 { name="BET"; version="0.4.0"; sha256="1yr45v4s1h61pgghfxfhi3gi5fw67fv6jxs9k70nvhifbvqn7143"; depends=[Rcpp]; }; 296 + BET = derive2 { name="BET"; version="0.4.1"; sha256="1jaqsj3gyl1jdpl9m2jm10s9zpwr25s70nxn4yg14aik5grccd6r"; depends=[Rcpp]; }; 297 297 BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; 298 298 BFS = derive2 { name="BFS"; version="0.4.1"; sha256="1crlx3v6bsd5gi0f1hhlcykydbpqn9fryfw5k0ynlcivgif0ll9z"; depends=[janitor jsonlite lifecycle magrittr pxweb rvest tibble tidyRSS xml2]; }; 299 299 BFpack = derive2 { name="BFpack"; version="0.3.2"; sha256="04rb48wdab23i20lv7s2a2dafxxyvvl9zxpl17var038v6rd02vs"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; ··· 315 315 BIEN = derive2 { name="BIEN"; version="1.2.4"; sha256="1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; 316 316 BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; 317 317 BIGDAWG = derive2 { name="BIGDAWG"; version="2.3.6"; sha256="1mlk2b293lr2vj0ydh96p9ynbvv67jnkqm9qxz9kcxq65b2i5cv3"; depends=[haplo_stats httr XML]; }; 318 - BIGL = derive2 { name="BIGL"; version="1.6.4"; sha256="1nlmzvygf5bakimjcqcvv6av4kj620nls3994j9zi4xxxs5i5j54"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; 318 + BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; 319 319 BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; 320 320 BINtools = derive2 { name="BINtools"; version="0.1.0"; sha256="061g1790m3gi88kj1avgxdnpdvj6n2mg5dh17c7vx4gx5g5x2q2d"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan StanHeaders stringi tibble]; }; 321 321 BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; ··· 368 368 BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; 369 369 BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; 370 370 BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; 371 + BSL = derive2 { name="BSL"; version="3.2.2"; sha256="0yn0ay7f9214d8f5ghrpn4bzwfxv5gk13ip10f1mpkhqv0cjbham"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; 371 372 BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; 372 373 BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; 373 374 BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; ··· 376 377 BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; 377 378 BTLLasso = derive2 { name="BTLLasso"; version="0.1-11"; sha256="1nz90jg74xzcwjxi9ppp7a78bg4976h2cmvlz140ss5403pnfbsk"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr TeachingDemos]; }; 378 379 BTM = derive2 { name="BTM"; version="0.3.6"; sha256="0ab0wr8nbwn1w1j9hpwfz52lm1sw0qk93713y9k0hpm3pw9dq4jr"; depends=[Rcpp]; }; 379 - BTSPAS = derive2 { name="BTSPAS"; version="2021.11.1"; sha256="0xr29fxgnp3kz73f0lx0985rblg53qzxcsnms9ng5idfiqkb3bdx"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; 380 + BTSPAS = derive2 { name="BTSPAS"; version="2021.11.2"; sha256="1as1r050qabbm9k19lbcdkyjsblc7f6hd3x7dy38rc6rxzp2iilj"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2 scales]; }; 380 381 BTYD = derive2 { name="BTYD"; version="2.4.2"; sha256="0yccq603vxjzhssb59icmps4iz0sn52wirwajx7995rz0zkfgfvh"; depends=[dplyr hypergeo Matrix optimx]; }; 381 382 BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; 382 383 BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; ··· 452 453 BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; 453 454 BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; }; 454 455 BayesSurvival = derive2 { name="BayesSurvival"; version="0.2.0"; sha256="1kpp0dfcmk86grg13b817py49v071q6p0dh8z22g6x2i8zl1vdfi"; depends=[ggplot2 survival]; }; 455 - BayesTools = derive2 { name="BayesTools"; version="0.1.2"; sha256="0bly7xx9i11m6qp1i6a934dflrcn4lnqzacfpzwibwvl7ipnxci6"; depends=[bridgesampling coda extraDistr ggplot2 runjags]; }; 456 + BayesTools = derive2 { name="BayesTools"; version="0.1.3"; sha256="0rbj503kxv0bgb2g05lwbl87xd8a2d6hh2z3pmv8ssd1wlh4s895"; depends=[bridgesampling coda extraDistr ggplot2 Rdpack runjags]; }; 456 457 BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; 457 458 BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; 458 459 BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; ··· 461 462 BayesX = derive2 { name="BayesX"; version="0.3-1"; sha256="0g4cdkvicqzg75qgr62j89dc9mni38ai7705j6jbfx59vn6dbrr5"; depends=[coda colorspace maptools shapefiles sp]; }; 462 463 BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1.1"; sha256="00q7hwan8db1a3wxczksl52bghyhfql3wj7sjvq50zsp0pjr6vng"; depends=[]; }; 463 464 BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; 464 - BayesianFROC = derive2 { name="BayesianFROC"; version="0.4.0"; sha256="1rq75kz2s4gphmiqr9jwv2jdjkia64bxa95sglb0h55wlsrww1fh"; depends=[bridgesampling car crayon ggplot2 knitr pracma Rcpp readxl rhandsontable rstan shiny shinydashboard shinythemes xlsx]; }; 465 + BayesianFROC = derive2 { name="BayesianFROC"; version="0.5.0"; sha256="0v19rpk8i0jrb3za6lsdwb97f2qkn3ja8sym8q43nqg5sfwsp5fw"; depends=[bridgesampling car crayon fastDummies ggplot2 knitr pracma Rcpp rhandsontable rstan shiny shinydashboard shinyjs shinythemes]; }; 465 466 BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; 466 467 BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; 467 468 BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; }; ··· 569 570 BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; 570 571 BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.3"; sha256="0sirpdp7k28wwn5k5wyc0ib6abb5b1qpjrrk3m168x5yg1s2hqkf"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; 571 572 BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; 573 + BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; 572 574 BrainCon = derive2 { name="BrainCon"; version="0.1.0"; sha256="10c76l14kdvcyfhph5zsrn4ayh0x454cxbn1v85jamcalp610n69"; depends=[glmnet MASS]; }; 573 575 Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; 574 576 BrazilMet = derive2 { name="BrazilMet"; version="0.1.0"; sha256="0yrc0ha7ysmad7l0kwylgmmd0b5zy86dsba4lrj8qa294lgxl5fa"; depends=[dplyr readxl stringr tidyr]; }; ··· 584 586 BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; 585 587 BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; 586 588 BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; 587 - BuyseTest = derive2 { name="BuyseTest"; version="2.3.0"; sha256="1vawklcxjp7apcq3k29skj2lqx8dwpl46a3rzglxpjm2scx3wy7c"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo]; }; 589 + BuyseTest = derive2 { name="BuyseTest"; version="2.3.5"; sha256="1zsjfry283ldzvjx5bdn728nb8fisijkgvam0zwxxp3awh3dr43r"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo]; }; 588 590 Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; 589 - C443 = derive2 { name="C443"; version="3.2.1"; sha256="19jnn0lghv1a3n6q57almmsqbqzpvab029h4lyy3xpydc8ij8j7b"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; 591 + C443 = derive2 { name="C443"; version="3.2.2"; sha256="0fs8pcqwhb9wqwharghr05v6jvgsqln3mya2v0zzcmir6qql33v2"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; 590 592 C50 = derive2 { name="C50"; version="0.1.5"; sha256="1mqn7xzl9sbx61jhhkiq1gllwf8s6l1cgz7mck53461p6147phgh"; depends=[Cubist partykit]; }; 591 593 CA3variants = derive2 { name="CA3variants"; version="3.0"; sha256="0n0a4rxaskz94kibcycrsg46w8r515r4pzadvlv6b43qpgwrqh92"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; 592 594 CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; ··· 938 940 ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; 939 941 Convolutioner = derive2 { name="Convolutioner"; version="0.1.0"; sha256="1ria4ii7zdqgrzgdx4c82dj4lg791iwy2y66fv1qyibws0ag3bhq"; depends=[]; }; 940 942 CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; 943 + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; 941 944 CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; 942 945 CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.1"; sha256="0pf3y335agfkdnxjyfcfkbrk2999p5h0by959ahc1wxyrxdghxsl"; depends=[doParallel foreach gdalUtils glue sf]; }; 943 946 Copula_Markov = derive2 { name="Copula.Markov"; version="2.8"; sha256="0wyb80jj9zgh7kn0nah7dljps72083c92hpds94dw4ccmw6cfwf6"; depends=[]; }; ··· 1006 1009 DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; 1007 1010 DAMisc = derive2 { name="DAMisc"; version="1.6.2"; sha256="0arazw6pjgd9xgsdnyz8ccwyrpakyqzraw6j08zlrnn6hv7p29mr"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects gamlss ggplot2 glue haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang rstan survey tibble tidyr tidyselect xtable]; }; 1008 1011 DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; 1009 - DArand = derive2 { name="DArand"; version="0.0.1.0"; sha256="1d24p9r0szxw9z0dacsq2vxlbg9qh0lk3k7ynqr16jl2g1c86lry"; depends=[]; }; 1012 + DArand = derive2 { name="DArand"; version="0.0.1.1"; sha256="0cmwqbhi073zj8ipgib6a6ss6h4r0x2w541xl24jyk5xz3c6s697"; depends=[]; }; 1010 1013 DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; 1011 1014 DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; 1012 1015 DBI = derive2 { name="DBI"; version="1.1.1"; sha256="0i0kfyg43nryyka2bjlgz4x75w965224qp36wz1hl7a2lswb6ajp"; depends=[]; }; ··· 1016 1019 DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; 1017 1020 DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; 1018 1021 DCEM = derive2 { name="DCEM"; version="2.0.4"; sha256="1g4c7h02rv467sgvjv19s0w4xcm11mwfamfs3sdy44ra9dgaf1af"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; 1022 + DCEmgmt = derive2 { name="DCEmgmt"; version="0.0.1"; sha256="1vv212baycn0xkk2caj1f00ps1512261h21akmyqjhij3q4lxikx"; depends=[mlogit survival]; }; 1019 1023 DCEtool = derive2 { name="DCEtool"; version="0.3.1"; sha256="05pmdd5ryv0jyqkqknjb33lvfcv4vqfqw46q231l5ixxcwapfvxr"; depends=[bslib commonmark DT htmltools idefix MASS mlogit readxl shiny shinycssloaders shinyglide shinyhelper shinyjs shinythemes stringr survival writexl]; }; 1020 1024 DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; 1021 1025 DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; ··· 1023 1027 DCLEAR = derive2 { name="DCLEAR"; version="1.0.8"; sha256="1riqsrzx9liq9fq9b4bfyfkixq879rzwa2yl202if8py42k1rnk5"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tidyr tidyverse]; }; 1024 1028 DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; 1025 1029 DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; 1026 - DCSmooth = derive2 { name="DCSmooth"; version="1.0.2"; sha256="0i2vf1d0kgi4i4yb1r6bis7mgh1vjqxj3msyrpvjz9iylywlg9vx"; depends=[astsa plotly Rcpp RcppArmadillo]; }; 1030 + DCSmooth = derive2 { name="DCSmooth"; version="1.1.2"; sha256="19pkj8z9wm4g8kxz1j3jw2n0bwldsyakipxvqpwnmlg2g5j8f5b1"; depends=[doParallel foreach fracdiff plotly Rcpp RcppArmadillo]; }; 1027 1031 DCchoice = derive2 { name="DCchoice"; version="0.1.0"; sha256="0vfnw856ff0p6wrhv991sjcl65p40200p4k0xl3w4sdv5017xszz"; depends=[Formula interval MASS]; }; 1028 1032 DChaos = derive2 { name="DChaos"; version="0.1-6"; sha256="0g1ld6big26gpj4p6dz0ncchqyspb73a8wd6h900b98hg32zidg6"; depends=[nnet outliers pracma sandwich xts zoo]; }; 1029 1033 DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; ··· 1047 1051 DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; }; 1048 1052 DEoptimR = derive2 { name="DEoptimR"; version="1.0-9"; sha256="04k5gi0a5hbm6znzvjaipbmkacp694krkqs38dkbxx1gymsallb1"; depends=[]; }; 1049 1053 DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; 1050 - DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.1"; sha256="0hbdvwb70s5r7lwfb21q5c2asqaqx2iciamppf4q9gz3m33kc9ql"; depends=[MASS MVN]; }; 1054 + DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.2"; sha256="08p5ncs4kgz9njskpfqqw3dymgyxv5pb5cwbsm6rsbb2k4w3bhn8"; depends=[MASS MVN]; }; 1051 1055 DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; 1052 1056 DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; }; 1053 1057 DGEobj = derive2 { name="DGEobj"; version="1.0.3"; sha256="0n2i6y2vhhypn3sgsysvfpxdfvhb3fq7pz2lv71bnn1fz3lghbsx"; depends=[assertthat GenomicRanges magrittr stringr]; }; 1054 - DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.3"; sha256="03h4ywzlidy0jzxxwgkzahz99856lhv25y9mvgsb0alh20c8x81j"; depends=[assertthat DGEobj dplyr edgeR IHW limma qvalue RNASeqPower statmod stringr sva tidyr zFPKM]; }; 1058 + DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.4"; sha256="0mad5cph7bszb7xykgsd9gk5d2zb0kwvb4yjrh84zfdnxgw8799w"; depends=[assertthat DGEobj dplyr edgeR limma qvalue stringr sva]; }; 1055 1059 DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.1.3"; sha256="1prsnkkhb61y01flxz57875a9arvyy2qxjl0lz5ajpmf8dhr08j8"; depends=[COMPoissonReg nloptr progress]; }; 1056 1060 DGM = derive2 { name="DGM"; version="1.7.3"; sha256="15dv56bh3fwxfam1smhjgwg0vzqq4c92gxwrhfz11frzh14gx7n8"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; 1057 1061 DHARMa = derive2 { name="DHARMa"; version="0.4.4"; sha256="1jpda8jpjpkkjh1cl28fzcx7fr7jz0czchsa0zr48wdg9zw7785m"; depends=[ape gap lme4 lmtest Matrix qgam]; }; ··· 1076 1080 DJL = derive2 { name="DJL"; version="3.7"; sha256="0j8535gdn5h1rjc357w30sdmarmm9sx9n62fiji191wpk1mm1dmh"; depends=[car lpSolveAPI]; }; 1077 1081 DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; 1078 1082 DLMtool = derive2 { name="DLMtool"; version="6.0.3"; sha256="00gh4di7ngn56v5hy7l5ybj6zg71fxaqyp1chmz22arb7rvj4q08"; depends=[dplyr ggplot2 MSEtool Rcpp]; }; 1083 + DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; 1079 1084 DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; 1080 1085 DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; 1081 1086 DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; ··· 1116 1121 DSI = derive2 { name="DSI"; version="1.3.0"; sha256="0c5phlhkwdx4w1szhn6ym2jc632mhpac417l2axl3a8jx63c1g25"; depends=[progress R6]; }; 1117 1122 DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; 1118 1123 DSLite = derive2 { name="DSLite"; version="1.3.0"; sha256="05wm02bwa4kcbg0q95368pnmnm0lpn6abk4ffliygha19d0pgpsf"; depends=[DSI R6]; }; 1119 - DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.3.7"; sha256="1gswcxlz8pgdrp8z5mc9gcy74590aq7wsv9nv2yihmzlk8q5vgr6"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; 1124 + DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.4.0"; sha256="036ha5m6q2i8s13mdgzs7r35j88z6xk2c8bdwn090akb0fqwq52y"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; 1120 1125 DSOpal = derive2 { name="DSOpal"; version="1.3.1"; sha256="1f5lh3j7yfxa5rpcfknwqralnn108mg8813k8sclav8f2y3qh9pi"; depends=[DSI opalr]; }; 1121 1126 DSSAT = derive2 { name="DSSAT"; version="0.0.4"; sha256="0wy1n1b2dnm6i1p18qrw43d42kgpp9dvg3zaim4277c6hsa7vw9p"; depends=[dplyr glue lubridate purrr readr rlang stringr tidyr]; }; 1122 1127 DSWE = derive2 { name="DSWE"; version="1.5.1"; sha256="129dx5sf938pqpbqbar6zwma58m59if45pp7x6zwvnh2n03gaxy8"; depends=[BayesTree e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo]; }; ··· 1138 1143 DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; 1139 1144 DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; 1140 1145 DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; 1141 - DTSg = derive2 { name="DTSg"; version="0.7.1"; sha256="0bqss8jrbd5ha373nkr38mnihchdzmprmvm7p82llxyshjym9gkb"; depends=[checkmate data_table R6]; }; 1146 + DTSg = derive2 { name="DTSg"; version="0.8.1"; sha256="19znfcwx9q97xjp52j7avq2qknlv9vd61nzmkya7j2l6q6rg0wrg"; depends=[checkmate data_table R6]; }; 1142 1147 DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; 1143 1148 DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; 1144 1149 DTwrappers = derive2 { name="DTwrappers"; version="0.0.2"; sha256="028n1211h9gmv050xfiw347x59gykb6ndvd371fdf53bbkqirqa4"; depends=[data_table]; }; ··· 1241 1246 DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; 1242 1247 DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; 1243 1248 DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; 1244 - Directional = derive2 { name="Directional"; version="5.0"; sha256="0dl90ail1ls800knfvkrjwjaiikjgkk3l59wk2k4c5jh2brng5al"; depends=[bigstatsr doParallel foreach RANN Rfast Rfast2 rgl]; }; 1249 + Directional = derive2 { name="Directional"; version="5.1"; sha256="1zx0554m40nipxg6dwh6mwl3z775m3lfby1q96hn43axvjnhhv7c"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth rnaturalearthdata sf]; }; 1245 1250 DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; 1246 1251 DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; 1247 1252 DisImpact = derive2 { name="DisImpact"; version="0.0.15"; sha256="1cksc68gqvlah6rzlh1h7glsl55v9kxkayvv05hz6fkcds01qkga"; depends=[dplyr purrr rlang tidyr tidyselect]; }; ··· 1272 1277 DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; 1273 1278 Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; 1274 1279 Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; 1280 + DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; }; 1275 1281 DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; 1276 1282 DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; 1277 1283 DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; 1278 - DoubleML = derive2 { name="DoubleML"; version="0.4.0"; sha256="03anph79516b00im5j47hyrcmcjsyxqvd5904lyyjv8cy161bpcv"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; 1284 + DoubleML = derive2 { name="DoubleML"; version="0.4.1"; sha256="01mrak86wwyb83jnya0rk4wm4yp77sandzgkhzv8mia74w6p2h77"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; 1279 1285 Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; 1280 1286 Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; 1281 1287 DrBats = derive2 { name="DrBats"; version="0.1.5"; sha256="1iaffippp9kwfrwryf7klmn8nsm2k8pc0bkgpxcsl4vxyy2na3mp"; depends=[ade4 coda MASS Matrix rstan sde]; }; ··· 1320 1326 ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; 1321 1327 EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; 1322 1328 EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; }; 1329 + EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; 1323 1330 EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; 1324 1331 EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; }; 1325 1332 EDNE_EQ = derive2 { name="EDNE.EQ"; version="1.0"; sha256="13aflnpznpzjrrdrn0r7v2mch6hjd77s6c3l7mnc2p59vq7mzmpg"; depends=[MASS]; }; ··· 1335 1342 EFAutilities = derive2 { name="EFAutilities"; version="2.1.1"; sha256="0kdwdjv4c9rfy49qs7a4134vwa2sm2pcam17a3xii2dq8mghg1za"; depends=[GPArotation MASS mvtnorm plyr]; }; 1336 1343 EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; 1337 1344 EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; 1338 - EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; }; 1339 1345 EGRET = derive2 { name="EGRET"; version="3.0.6"; sha256="0klpfrq2392s56x5q5pxvli4m7ivn146dwyh1svqz9pngqnwbif3"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; 1340 1346 EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; 1341 1347 EHR = derive2 { name="EHR"; version="0.4-4"; sha256="0b42ny3xc936qgbfgibywpmancrbdvkcwwhy55lbqlm8xhzyr6s8"; depends=[data_table lubridate pkdata]; }; ··· 1352 1358 ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; }; 1353 1359 ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; }; 1354 1360 EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; 1355 - EMAtools = derive2 { name="EMAtools"; version="0.1.3"; sha256="1kzna29kd6s2hgli5azrfz85mbyl1x6knvhhhny2scf7a1fcijsy"; depends=[DataCombine ggplot2 lmerTest sjstats]; }; 1361 + EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; }; 1356 1362 EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; 1357 1363 EMCluster = derive2 { name="EMCluster"; version="0.2-13"; sha256="0d0zb6bppgbd5kyfzzckxk6w8v4gjvzk6k16xbhvq8gzcs7w4lhf"; depends=[MASS Matrix]; }; 1358 1364 EMD = derive2 { name="EMD"; version="1.5.8"; sha256="0bvwx5ry41cpj646v93vm50c6qb3m5d7mda9q7znmcr4sdf521j5"; depends=[fields locfit]; }; ··· 1390 1396 ETAS = derive2 { name="ETAS"; version="0.4.7"; sha256="1l8l0vmar720jz893kv8d2gg1m1jyxh1dkanh9aaiivdw0wg6k9b"; depends=[fields goftest lattice maps Rcpp spatstat spatstat_core spatstat_geom]; }; 1391 1397 ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; 1392 1398 ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; 1393 - EValue = derive2 { name="EValue"; version="4.1.2"; sha256="0339g1034sfkqdry6mf8ly962rk2prsm9q4lszjz9yifvarzxwyr"; depends=[boot dplyr ggplot2 metafor MetaUtility]; }; 1399 + EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; 1394 1400 EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; 1395 1401 EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; 1396 1402 EWS = derive2 { name="EWS"; version="0.2.0"; sha256="0rkxnc5pwrjgm2j201rg0z4nqb75rpkqh3hff4lvw1zmnr9flm6r"; depends=[numDeriv]; }; ··· 1494 1500 Exact = derive2 { name="Exact"; version="3.0"; sha256="0acm01njg3arlzwknv5v1sdsz5ab0bdh04sn1bmf91hcg3li8qd7"; depends=[rootSolve]; }; 1495 1501 ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; 1496 1502 ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; 1497 - ExamPAData = derive2 { name="ExamPAData"; version="0.4.0"; sha256="1x901nf78hrb2124d894jwp65gr8bfrp4h161czwgx5a2zikn2f6"; depends=[]; }; 1503 + ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; 1498 1504 ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; 1499 1505 ExcelFunctionsR = derive2 { name="ExcelFunctionsR"; version="0.1.4"; sha256="1j3vfvfk8lp46zb6fwvq9lafk7r2qrnx4vxyhaih71c0a8g6dz9n"; depends=[lubridate plyr roperators stringr tidyr]; }; 1500 1506 ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; ··· 1576 1582 FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; 1577 1583 FNN = derive2 { name="FNN"; version="1.1.3"; sha256="0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"; depends=[]; }; 1578 1584 FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; 1585 + FORTLS = derive2 { name="FORTLS"; version="1.0.5"; sha256="0k90x5vrg97nndif4grg14240m6gj8jsfr1lp3rgcx8h26gdlgq7"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; }; 1579 1586 FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; 1580 1587 FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; 1581 1588 FPDclustering = derive2 { name="FPDclustering"; version="2.0"; sha256="04anczbml5mpxi65qalafs5q4pign6abhqsc2birvvg23r3hhhfh"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; ··· 1745 1752 GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; 1746 1753 GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; 1747 1754 GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; 1755 + GCPBayes = derive2 { name="GCPBayes"; version="3.1.0"; sha256="1239pr1i9q4sfy7az6jc8sh10xil5m2a70v9sm29ll53vsza73jj"; depends=[arm gdata invgamma MASS mvtnorm postpack Rcpp truncnorm usethis wiqid]; }; 1748 1756 GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; 1749 1757 GCSM = derive2 { name="GCSM"; version="0.1.1"; sha256="0apz1wh6nfpg2gyx12xnbdb3hjyrrpwlcrh5khn6cxhxm06q9l95"; depends=[Rcpp RcppArmadillo]; }; 1750 1758 GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; ··· 1754 1762 GDAtools = derive2 { name="GDAtools"; version="1.7"; sha256="1fsx2kxilvfvm9nccn1a9ly6kavz9l8np6az2ax9dd00rbvqjcjl"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; 1755 1763 GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; 1756 1764 GDINA = derive2 { name="GDINA"; version="2.8.7"; sha256="08cdjp4mqn81j3wa770v7n8zkslys9jqqb3d3c09dkfmgdk6hga4"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; 1765 + GDPuc = derive2 { name="GDPuc"; version="0.5.1"; sha256="1pdhl8mccxb613994f3y59a89rvksi8kb7j2aaf7msnh67rndrrn"; depends=[cli crayon dplyr glue lifecycle magrittr rlang stringr tibble tidyselect]; }; 1757 1766 GE = derive2 { name="GE"; version="0.2.2"; sha256="1lmldzsmnh13mp4vs3pzjfyzzam4ac4w9d749j61w5w4maawy6hc"; depends=[CGE data_tree DiagrammeR]; }; 1758 1767 GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; 1759 1768 GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; ··· 1779 1788 GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; 1780 1789 GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; 1781 1790 GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; 1782 - GGIR = derive2 { name="GGIR"; version="2.4-0"; sha256="15aljzy725x00grhphr2x5j8w5djf1z7wc3683vdji78q3znwj1b"; depends=[bitops data_table doParallel foreach GENEAread ineq matlab Rcpp signal tuneR unisensR zoo]; }; 1791 + GGIR = derive2 { name="GGIR"; version="2.5-0"; sha256="1w34hiandjq8xakybw6khdgqb7xwav3s7rp4pvxr330d6nazz9k9"; depends=[bitops data_table doParallel foreach GENEAread ineq matlab Rcpp signal tuneR unisensR zoo]; }; 1783 1792 GGMncv = derive2 { name="GGMncv"; version="2.0.0"; sha256="1h1h2qx784f41ihmylj8zxhcxcd67r10qpz5938iynnr04mjm6l0"; depends=[ggplot2 glassoFast MASS mathjaxr numDeriv Rcpp RcppArmadillo Rdpack reshape]; }; 1784 1793 GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; 1785 1794 GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; ··· 1931 1940 GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; 1932 1941 GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; 1933 1942 GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; 1934 - GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.1"; sha256="1055qdnf003j7pg0mphwk2ilghnyz7i3yvdy5yj3yjz96drapl3p"; depends=[cqn data_table magrittr plyr]; }; 1943 + GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.2"; sha256="1s3l445igzf1xirfxjkp34djcfipbpcgyd5fd3icnsy2dkfkc787"; depends=[cqn data_table magrittr plyr]; }; 1935 1944 GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; 1936 1945 GeodesiCL = derive2 { name="GeodesiCL"; version="1.0.0"; sha256="1i3i6vlh3nnb7z6qzh2cd6cqka78bfdly952x5ryl7cb2590a4pc"; depends=[dplyr htmltools leaflet leafpop magrittr mapview profvis readr rgdal sp tibble]; }; 1937 1946 GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; ··· 2007 2016 HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; 2008 2017 HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; 2009 2018 HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.2"; sha256="05w742g89r0hr90awwjqlszib2jjfly52l9c7ag3n22vg4d1ixw1"; depends=[ggplot2 mvtnorm survival]; }; 2010 - HDBRR = derive2 { name="HDBRR"; version="1.1.1"; sha256="0l1knpk165wbs235jgdc5rg60l0z2n15yg3cx8whqf71d8fqn5i9"; depends=[bigstatsr MASS numDeriv]; }; 2019 + HDBRR = derive2 { name="HDBRR"; version="1.1.2"; sha256="0xaj6h7llkmqizmcmivislx3yszqypdcnlrrs8xzandfbzfkyk1q"; depends=[bigstatsr MASS numDeriv]; }; 2011 2020 HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; 2012 2021 HDCurves = derive2 { name="HDCurves"; version="0.1.0"; sha256="1ifcbwcqgdxicqxcqrsl9kp3zadxhijpwff8ln309378vybr3gh1"; depends=[]; }; 2013 2022 HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; ··· 2017 2026 HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; 2018 2027 HDMT = derive2 { name="HDMT"; version="1.0.3"; sha256="15p8n1schk5i708k3h7ly5a8rxhm6jivjdlqkica5mzghl2bqa37"; depends=[fdrtool]; }; 2019 2028 HDPenReg = derive2 { name="HDPenReg"; version="0.94.7"; sha256="16kmx3lddjvz8k7sric0s9ajhlgp62gf1zkyiscaf7w0pjwzin28"; depends=[Matrix Rcpp rtkore]; }; 2020 - HDShOP = derive2 { name="HDShOP"; version="0.1.1"; sha256="1pryl763jsw31zhginhw9aqgl1879mcarkqkw5pvjp1yxkb06w0z"; depends=[Rdpack]; }; 2029 + HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; 2021 2030 HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.2"; sha256="0j6frhnxbchy2r425zhx952vvdivrpcrq0440rr4mbr4rla2ci4s"; depends=[DT fmsb matrixStats plotrix purrr Rcpp RcppArmadillo rgdal rgeos sp SpatialNP swfscMisc TeachingDemos]; }; 2022 2031 HDTSA = derive2 { name="HDTSA"; version="1.0.0"; sha256="1mphx55ibw8rlv5cz7vr8m3sgyl0qz0nfk26mcnnfsk38x6hl9zc"; depends=[clime Rcpp RcppEigen sandwich]; }; 2023 2032 HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; ··· 2208 2217 INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; 2209 2218 INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; 2210 2219 INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; 2211 - IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.5.2"; sha256="09id0v0bxibg769wn5fz11rkz2d5wrfhix0c3y94ms6b7nhkg2rd"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinyjs stringi]; }; 2220 + IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.1"; sha256="0iipdksj9bxcf3k2acm6ay1sjk9hcp860kqf7dflvcmf3i271rfc"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs stringi]; }; 2212 2221 IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; 2213 2222 IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; 2214 2223 IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; ··· 2374 2383 KMunicate = derive2 { name="KMunicate"; version="0.2.1"; sha256="19bsnixy59jqpj414827l2r65jimf0swxg36bi90s3pr4mvf7snq"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; 2375 2384 KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; 2376 2385 KOBT = derive2 { name="KOBT"; version="0.1.0"; sha256="0dw6s68x95d4z5a6p8bs1368jcxv5jx0wd87js28i2qm3q57ss71"; depends=[glmnet knockoff MASS Rdpack spcov xgboost]; }; 2377 - KODAMA = derive2 { name="KODAMA"; version="1.7"; sha256="1ns3by43z144h697lphjvw94fvmy8dc18jq6kpwpxmra4rvkmk2p"; depends=[minerva Rcpp RcppArmadillo]; }; 2386 + KODAMA = derive2 { name="KODAMA"; version="1.8"; sha256="0i1lwjzxjpm9yng763hkbi88q13i9bhcwwin6b3lkif34r4c3n8y"; depends=[minerva Rcpp RcppArmadillo]; }; 2378 2387 KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; 2379 2388 KONPsurv = derive2 { name="KONPsurv"; version="1.0.3"; sha256="1qijx7b6idjy23kqb5l58l6nc6dh35vrkxv370qpj3y2gvvn9d6x"; depends=[Rcpp survival]; }; 2380 2389 KPC = derive2 { name="KPC"; version="0.1.0"; sha256="1kgrkhhvjkhirp04fgf36x5v5f7ba2yczj11fdk3l12k5k0dx621"; depends=[data_table emstreeR gmp kernlab proxy RANN]; }; ··· 2396 2405 KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; 2397 2406 KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; 2398 2407 KernelICA = derive2 { name="KernelICA"; version="0.1.0"; sha256="1yq7w24qq23c81a9y0jn36iw7zjbxsj3b3p1rq6yl0lanzda9bsr"; depends=[ICtest inline JADE ManifoldOptim Rcpp RcppArmadillo RcppEigen]; }; 2399 - KernelKnn = derive2 { name="KernelKnn"; version="1.1.3"; sha256="0q74blyngfbqr1xvhsylchl6drl41hqk5gipvwamxdy9202jwsag"; depends=[Rcpp RcppArmadillo]; }; 2408 + KernelKnn = derive2 { name="KernelKnn"; version="1.1.4"; sha256="07sjf3ambfih34gm2gkall4h60jy9am8dvakr71wk0lsabih3wqx"; depends=[Rcpp RcppArmadillo]; }; 2400 2409 Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.8"; sha256="0abv5cq9vjdb8jy3niv6xj3gyz4i1l9h7227lrldq43w049i04jx"; depends=[fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; 2401 2410 Keyboard = derive2 { name="Keyboard"; version="0.1.0"; sha256="12i9zfpbh2297j78yrz6nnbmj926n3xdkbzmy1p9z7g9bi4cqrp1"; depends=[Iso Rcpp]; }; 2402 2411 KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; ··· 2546 2555 LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; 2547 2556 LearningRlab = derive2 { name="LearningRlab"; version="2.2"; sha256="15lkcrdfdrip1s4rpsn6kshjzsg1hfryh6lgbiqw9x2h0xvfj4da"; depends=[crayon magick]; }; 2548 2557 LearningStats = derive2 { name="LearningStats"; version="0.1.0"; sha256="0xrrb6jws4zj2nwnn30g338bib49b7j26v52ym7p2variwllz068"; depends=[data_table haven readODS readxl]; }; 2549 - LexFindR = derive2 { name="LexFindR"; version="1.0.1"; sha256="0c2bw973wapbxm00094blvg3k778pikrqqn3ry2b09lq17bx8xgp"; depends=[]; }; 2558 + LexFindR = derive2 { name="LexFindR"; version="1.0.2"; sha256="16ikw3s034zqgfcp2hiyhv1nq5kp65wpq1d8fclrlqiabilyk7x4"; depends=[]; }; 2550 2559 LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; 2551 2560 LibOPF = derive2 { name="LibOPF"; version="2.6.1"; sha256="01j3jzhi337dmblcm1d79i4cbp159z6k54ybpyzfasjfnp7qizz6"; depends=[]; }; 2552 2561 LiblineaR = derive2 { name="LiblineaR"; version="2.10-12"; sha256="0r5xbklbfgflwlmkh4i0bsdyqcjs1b4lvxr20f4fhajmkj83gqrs"; depends=[]; }; ··· 2635 2644 MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; 2636 2645 MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; 2637 2646 MBESS = derive2 { name="MBESS"; version="4.8.1"; sha256="09r9rkyprajrq30v671xsf1q5nmy2fijw19dd73rpnfmdg3nqiyf"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; 2638 - MBHdesign = derive2 { name="MBHdesign"; version="2.1.9"; sha256="1bv5h59q83jkfb3h7siwj9h2cwc1qmwld48xy8bfipznycfi77al"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; 2647 + MBHdesign = derive2 { name="MBHdesign"; version="2.1.11"; sha256="0qybdkzmgfpsrqpmxa91kbq2cxhalj3vfvxjj31lic6kk56dllj4"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; 2639 2648 MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; 2640 2649 MBNMAdose = derive2 { name="MBNMAdose"; version="0.3.0"; sha256="12ij19828nd1r0x1vp7clkwr0zfksk3f755xghzylz0ryjjb716d"; depends=[checkmate dplyr formatR igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales utf8]; }; 2641 2650 MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.1"; sha256="1qm8g9hljl3qsnh434dzg2y0iyq635ym1ygfzr0q8l6h76qr7p1j"; depends=[checkmate dplyr knitr magrittr R2jags Rdpack reshape2 rjags]; }; ··· 2719 2728 MIIPW = derive2 { name="MIIPW"; version="0.1.0"; sha256="05l75pr81fv7b7w24mhvww5c49211bnxvksvy7kiwypc592zwjqk"; depends=[matlib R2jags]; }; 2720 2729 MIIVsem = derive2 { name="MIIVsem"; version="0.5.8"; sha256="1qb1xrxhgj6b0l24spbp80f0rm8v41bqsdachqjhsacq2lgga259"; depends=[boot car lavaan Matrix numDeriv]; }; 2721 2730 MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; 2722 - MIMSunit = derive2 { name="MIMSunit"; version="0.11.0"; sha256="03mzjf86qs9kqpqn9vqspfv4jkx52s3yvgr3nk1p28w5qhdi2nq5"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; }; 2723 2731 MINTplates = derive2 { name="MINTplates"; version="1.0.1"; sha256="1jj51314p2ni3f3ncpd8gp7pgshhsp97ic123d732sc9xr0h5rnr"; depends=[]; }; 2724 2732 MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; 2725 2733 MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; ··· 2890 2898 MatchIt = derive2 { name="MatchIt"; version="4.3.0"; sha256="0ijlv2gggxc6b9k0zcbni1dass1n4b312w66rgafn6bw3aw7m2fa"; depends=[backports Rcpp RcppProgress]; }; 2891 2899 MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; 2892 2900 MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; 2893 - Matching = derive2 { name="Matching"; version="4.9-10"; sha256="1fbbn7az1qxsddw1lgzxg50l4ndbldw78pkfdip05bkjcbwksh16"; depends=[MASS]; }; 2901 + Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; 2894 2902 Matrix = derive2 { name="Matrix"; version="1.3-4"; sha256="0fbcbysp3vaivmp1yasmp8mdsldhr826vfs4vyxrjpjl8jfifhmb"; depends=[lattice]; }; 2895 2903 Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; }; 2896 2904 MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.5"; sha256="192pmfm8csvs2lf2hxpsj542lrd8b74rg4wzmz3s3m9i98pd0h4d"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; 2897 2905 MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; 2898 - MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.7"; sha256="13zckc0zccw5l459rpsr7spcp1l3rxd5x6fz686vv8ck3zgvl5sc"; depends=[float Matrix Rcpp RhpcBLASctl]; }; 2906 + MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.8"; sha256="1115z5mk7pmb4v4zcdrcbgwv7ifj2417r6705ksp0b2qkp62ny6j"; depends=[float Matrix Rcpp RhpcBLASctl]; }; 2899 2907 MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; 2900 2908 MatrixMixtures = derive2 { name="MatrixMixtures"; version="1.0.0"; sha256="0l9f7sicigp88rqi2bn4bmlrb130qvyikn4mlfphcpa16rvk37dq"; depends=[doSNOW foreach snow withr]; }; 2901 2909 MatrixModels = derive2 { name="MatrixModels"; version="0.5-0"; sha256="1va6i6bpkq71rzl9i4xgyc5x7qcksa3nfzihlaggf6aj30dayzx8"; depends=[Matrix]; }; ··· 2916 2924 MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; 2917 2925 MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; 2918 2926 Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; 2919 - MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.5"; sha256="1nd6sgqxx76yz6fyvdlvqvk7bg7dq8w4laamkabnzha35fsz567y"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; }; 2920 2927 MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.5.1"; sha256="1qi5v4m19025zcigl6wxmj3vi6zjlzgsm6cj75kywq2qabrzk2fw"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; 2921 2928 Mercator = derive2 { name="Mercator"; version="1.1.1"; sha256="0jg5dm65smq67k35p8acqd5kdsv7py8plaamagbsc84617r0iaik"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; 2922 2929 MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; ··· 2937 2944 MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; 2938 2945 MetaStan = derive2 { name="MetaStan"; version="0.4.0"; sha256="1qdb1y4hwkrhdyhjvig7vfybz0ixmm6w85yq0bmapxj10qs8ars9"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; 2939 2946 MetaSubtract = derive2 { name="MetaSubtract"; version="1.60"; sha256="19xg95g2qgyi90pz3733l596gzdj6dmb0k9i4qmhaq4yck69rrhj"; depends=[]; }; 2940 - MetaUtility = derive2 { name="MetaUtility"; version="2.1.1"; sha256="1v37rpycciwrcwzs69qqb4c8nk2wg3ilaimaqbbfzvl33h1hhqwd"; depends=[dplyr metafor purrr rlang stringr tidyr]; }; 2947 + MetaUtility = derive2 { name="MetaUtility"; version="2.1.2"; sha256="0pddp4h7jk2y140yiw4j5661011v1ym1dnb4ds9ai6i3iic23373"; depends=[dplyr metadat metafor purrr rlang stringr tidyr]; }; 2941 2948 MetaboList = derive2 { name="MetaboList"; version="2.0"; sha256="10skvf14ls4qll0l9p6cig4lmj7138khcksyjvd1pqym9axk3wxn"; depends=[dplyr enviPick ggplot2 scales]; }; 2942 2949 MetaboQC = derive2 { name="MetaboQC"; version="1.1"; sha256="1rrhssm882xkp6ydgy3qba9c7ww3p6vxy04z4v7v6v7ilc5bvrgi"; depends=[plyr]; }; 2943 2950 MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3.1"; sha256="070qws759nczjrfdlh7jpbyjz4z3zm1hzb7vcvfgfks82wwb2ny0"; depends=[ellipse gplots gtools mclust mvtnorm]; }; ··· 2964 2971 MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; 2965 2972 MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; 2966 2973 MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; }; 2967 - Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.1"; sha256="1vwhrfrqms0l7vprzbchwkfsijzdpirvvaxv018hlm7qh92yf4rx"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; 2974 + Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.2"; sha256="1qc4716mvkfvxwkzjihf00my6y4va3day3lnh5iwpb5k9kgrnhgm"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; 2968 2975 MinBAR = derive2 { name="MinBAR"; version="1.1.2"; sha256="099afazil0gfs5yq92clc7ahis5azyvlql4zs7fhp82v9m6b80qj"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; }; 2969 2976 MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; 2970 2977 MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; ··· 3216 3223 Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; 3217 3224 Numero = derive2 { name="Numero"; version="1.8.4"; sha256="0kkska60ilk3lqf5w6z21pjldipg4pky0qgzpbsl69ial62z8xsy"; depends=[Rcpp]; }; 3218 3225 NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.1.0"; sha256="1xik2q229vkh34q211b6a1pij9fvcs0wik0ypl4j1jlfvl673rz8"; depends=[ggplot2 shiny]; }; 3219 - OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-2"; sha256="1vwi3dvpnlap1w96xc4q0cv7lym616sf4rgdqim250nsw5ciyiwx"; depends=[curl xml2]; }; 3226 + OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; 3220 3227 OBASpatial = derive2 { name="OBASpatial"; version="1.8"; sha256="1xc4qz3i5pphgf17asyiafdnlhv5k88rw0fwkwfh8cz767wip1hw"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; 3221 3228 OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; 3222 3229 OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; ··· 3272 3279 OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; 3273 3280 OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; 3274 3281 OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; 3275 - OmicInt = derive2 { name="OmicInt"; version="1.1.5"; sha256="1jyv5bffckvjkgxbplh4z3f6l34nl07sxm8as35z9g34dfdg64pv"; depends=[cluster dendextend dplyr ggExtra ggplot2 gtools igraph knitr lattice mclust pheatmap plotly RColorBrewer RCurl reshape2 rmarkdown STRINGdb stringr tidyr tidyselect]; }; 3282 + OmicInt = derive2 { name="OmicInt"; version="1.1.7"; sha256="1rrh2z8hbfvha8yi7d7m7bpgz514cp9dzv5vs4yn5pagzca6r5np"; depends=[cluster dendextend dplyr ggExtra ggplot2 gtools igraph knitr lattice mclust pheatmap plotly RColorBrewer RCurl reshape2 rmarkdown STRINGdb stringr tidyr tidyselect]; }; 3276 3283 OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; 3277 3284 OmicNavigator = derive2 { name="OmicNavigator"; version="1.4.3"; sha256="0d000yscxqzk80fgavgilvwr6xw1czkdcpz19f5ra4wnxgcpbb3i"; depends=[data_table jsonlite]; }; 3278 3285 OmicsPLS = derive2 { name="OmicsPLS"; version="2.0.2"; sha256="08vx4925j5ln366h7nzhf1ra5ciplrqw911258chi9di7gpm8g50"; depends=[dplyr ggplot2 magrittr softImpute tibble]; }; ··· 3327 3334 PAC = derive2 { name="PAC"; version="1.1.4"; sha256="0h7381mr3jgzl7fi6v7amgmkf5agpkgy068c6ysgh3adlwsh6gs6"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; 3328 3335 PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; 3329 3336 PACVr = derive2 { name="PACVr"; version="0.9.4"; sha256="0sj5ibqaw452lncxxbm6xkgmmh9ny6hx4b9hppzwglpgk6vvb5f3"; depends=[BiocGenerics Biostrings genbankr GenomicAlignments GenomicRanges IRanges optparse RCircos]; }; 3330 - PAFit = derive2 { name="PAFit"; version="1.1.0.4"; sha256="0pwfc9jk7yg18y5mym3ivkasrx7g3263gq8z0q8ljzvvvah84sb5"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; 3337 + PAFit = derive2 { name="PAFit"; version="1.2.1"; sha256="0m6rwlkba1f53f4mpdg1wy0bf92wigbgp6a6i9y1b8hy9yv45n19"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; 3331 3338 PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; 3332 3339 PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; 3333 3340 PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; ··· 3362 3369 PCGSE = derive2 { name="PCGSE"; version="0.4"; sha256="0ky1nzhz6v9n34kas9nw2scc6ip7av19g09zcsxaa9436nhip4f6"; depends=[MASS RMTstat safe]; }; 3363 3370 PCICt = derive2 { name="PCICt"; version="0.5-4.1"; sha256="17ipmv6ps7c9dv4k9kxjjynnlgr63baz9z9ndwfg0lckc3vw81ya"; depends=[]; }; 3364 3371 PCL = derive2 { name="PCL"; version="1.0"; sha256="0sqlwg0aiw9f1z4x5nixv4x3rq5rnm5i1hijdqygnh9dvckfrgs0"; depends=[]; }; 3372 + PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; 3365 3373 PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; 3366 3374 PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; 3367 3375 PCMRS = derive2 { name="PCMRS"; version="0.1-2"; sha256="1zr2kzwxgr7rifkkmgz9vhq5i9ky6lqrss742vybwl0nx78mad3p"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; ··· 3400 3408 PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; 3401 3409 PKI = derive2 { name="PKI"; version="0.1-8"; sha256="0qk75ml1xpai8hbh9d73rb0w0gwd559dr62ak8kj8q2ppw5vsfa5"; depends=[base64enc]; }; 3402 3410 PKLMtest = derive2 { name="PKLMtest"; version="1.0.0"; sha256="0qy0v6jakhczid1bc5d2w52xq0ly770icpn4b8v22wkpn8dvgbd1"; depends=[ranger]; }; 3403 - PKNCA = derive2 { name="PKNCA"; version="0.9.4"; sha256="01qipd6liy3fqx96v6hp288drgv6cqmhipbacyh18zi5pifv9hdp"; depends=[digest dplyr nlme rlang tidyr]; }; 3411 + PKNCA = derive2 { name="PKNCA"; version="0.9.5"; sha256="0grz5akbpb6i2dg8s9v34qr1zw1r8pczqw2amm6ihi8bxr799223"; depends=[digest dplyr nlme purrr rlang tibble tidyr]; }; 3404 3412 PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; 3405 3413 PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; 3406 3414 PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; ··· 3463 3471 PReMiuM = derive2 { name="PReMiuM"; version="3.2.7"; sha256="108ijvhs48i0sphqvpkxa3bwcsak7098irz5x82zja42h9bz5hwf"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; 3464 3472 PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; 3465 3473 PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; 3466 - PSCBS = derive2 { name="PSCBS"; version="0.65.0"; sha256="16irvlc3ds7p03racjzyljqsc43bbwng3zsb0bmrkibmadfhcr9k"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; 3474 + PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; 3467 3475 PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; 3468 3476 PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; 3469 3477 PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; ··· 3473 3481 PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.2"; sha256="04wh8hkpxzf0ldsydq4czg3f5v1zwr1ky86hi42hy9xr94m5mi1r"; depends=[dtt gtools infotheo phonTools]; }; 3474 3482 PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; 3475 3483 PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; 3476 - PSweight = derive2 { name="PSweight"; version="1.1.4"; sha256="06na7w1wdh4f1qlhiazsl192ap4rz6anp108s3g7p5prw0lxq1j1"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; 3484 + PSweight = derive2 { name="PSweight"; version="1.1.5"; sha256="06vn5xv7s80pb88vhwfgbff6jly9p0fpa81p48vijjff2gg6d6nh"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; 3477 3485 PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; 3478 3486 PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; 3479 3487 PTXQC = derive2 { name="PTXQC"; version="1.0.11"; sha256="15qgmirj9hf4fxxg1arg2sx6fff5rfdszln6rbmidj104biggjpg"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; ··· 3577 3585 PlanetNICFI = derive2 { name="PlanetNICFI"; version="1.0.3"; sha256="03nm6lrn0gm3fl8v7mz2pglr9gbh7vfh03j1pfqyfk0k58a92a48"; depends=[data_table gdalUtils glue httr raster sf]; }; 3578 3586 PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; 3579 3587 Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; 3580 - Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; }; 3581 3588 Platypus = derive2 { name="Platypus"; version="3.2.3"; sha256="1idmarx9r2iyp1wpcw46kfjgjzdws75kdiaz9vg6m618fj4n88cl"; depends=[BiocGenerics Biostrings dplyr ggplot2 jsonlite knitr Matrix plyr reshape2 rmarkdown seqinr Seurat SeuratObject stringr tibble tidyr useful]; }; 3582 3589 PlayerRatings = derive2 { name="PlayerRatings"; version="1.1-0"; sha256="04hdjv1gb5b3zym2ryjpqrqhs823nlkmbimfnxw1cfn921ljjgpj"; depends=[]; }; 3583 3590 PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; ··· 3627 3634 Power2Stage = derive2 { name="Power2Stage"; version="0.5-3"; sha256="0fs6hkpfivc98dxnlmxqaxsr3bxvfqawjnwyw0qvans8m4wcq1kx"; depends=[cubature mvtnorm PowerTOST]; }; 3628 3635 PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; 3629 3636 PowerTOST = derive2 { name="PowerTOST"; version="1.5-3"; sha256="0473vm267hsq7s8ggm4m01jig067qcpm30cza0j1kx9cw6ghq68d"; depends=[cubature mvtnorm TeachingDemos]; }; 3630 - PowerUpR = derive2 { name="PowerUpR"; version="1.0.4"; sha256="0ng88x1zs4kb8cf2v51kynbp32iz41mh40my5sciyvjbw430bk59"; depends=[]; }; 3637 + PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; 3631 3638 PracTools = derive2 { name="PracTools"; version="1.2.2"; sha256="08s8pm55814w6mjz3q4n1bcxccmjypb5qiws5g8pcafl6dj7z0wh"; depends=[]; }; 3632 3639 PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; 3633 3640 PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; ··· 3694 3701 QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; }; 3695 3702 QBMS = derive2 { name="QBMS"; version="0.6"; sha256="083asm4qck29n7mm0b39h1gv7mbsa62w7xn16vy7cmyim9si5h3z"; depends=[httr jsonlite]; }; 3696 3703 QCA = derive2 { name="QCA"; version="3.13"; sha256="1v85bcir1jpkm61zpv9zyf79qv3nb4z0z5lh1r10b9idffddcjws"; depends=[admisc shiny venn]; }; 3704 + QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; 3697 3705 QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; 3698 3706 QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; 3699 3707 QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; ··· 3703 3711 QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; }; 3704 3712 QDComparison = derive2 { name="QDComparison"; version="3.0"; sha256="0y4494r3ixkyh58xr9md7c6xgcj1hgbjzfybvqqdbawjxvy5p38i"; depends=[]; }; 3705 3713 QDiabetes = derive2 { name="QDiabetes"; version="1.0-2"; sha256="0r1rbg3azh7y4f5r9w0zj6qa658f63gyq6b007q514iivkzxib1c"; depends=[]; }; 3706 - QF = derive2 { name="QF"; version="0.0.4"; sha256="1f5506l3jjq657lfh3r1dn9cfxsdsbph11i1f6wnqpfdcjhk7dj1"; depends=[Rcpp RcppGSL]; }; 3714 + QF = derive2 { name="QF"; version="0.0.6"; sha256="0kvhvpj28293i65wh00jyz7fsbqk5q8x5i05bsk29n2rfrf627bl"; depends=[Rcpp RcppGSL]; }; 3707 3715 QFASA = derive2 { name="QFASA"; version="1.1.1"; sha256="16y8clv9h5crr9x79y0zzc2qmazi1d6qdslk1ranp2llwa42d9sp"; depends=[boot bootstrap Compositional compositions dplyr futile_logger gamlss gamlss_dist MASS Rcpp RcppEigen Rsolnp TMB vegan]; }; 3708 3716 QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; 3709 3717 QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; ··· 3783 3791 RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; 3784 3792 RAEN = derive2 { name="RAEN"; version="0.2"; sha256="098d990qa987hx2llqwdw2bmi5nmrlda23j1rgmw5nirllk28d30"; depends=[boot doParallel fastcmprsk foreach glmnet lars]; }; 3785 3793 RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.26"; sha256="1x2gdx9fk28r7q6i5b8x0kald2qfiljqm62fpwhg57vz0q53pl51"; depends=[ape cluster expm ggplot2 ggtree haplotypes here htmlwidgets MASS Matrix optimx pbmcapply pegas phylobase Rcpp RcppEigen Rfast rrBLUP scatterpie stringr]; }; 3786 - RALSA = derive2 { name="RALSA"; version="1.0.1"; sha256="0gvckia9xl6yr4w5mdmz500xcbghjak3krf6as2mmr814ibmw3k0"; depends=[data_table DT foreign gdata Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; 3794 + RALSA = derive2 { name="RALSA"; version="1.0.2"; sha256="066m08v3kd5y3cw3s9d8ijchwfd4fw8ps4mgh4q3zy2y7g0wda97"; depends=[data_table DT foreign Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; 3787 3795 RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; 3788 3796 RAMClustR = derive2 { name="RAMClustR"; version="1.2.2"; sha256="0v75dxwn1bybjw3zybvz60j01nffl0nzybw5k0a7kqhbcb7cdpqw"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr InterpretMSSpectrum jsonlite MSnbase pcaMethods preprocessCore RCurl stringi stringr webchem xml2]; }; 3789 3797 RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; ··· 3800 3808 RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; 3801 3809 RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; 3802 3810 RAppArmor = derive2 { name="RAppArmor"; version="3.2.2"; sha256="0l0f4k666nh00db94sjxz60anr4l9vm0259pcc2a4whk2pmjcq5n"; depends=[unix]; }; 3803 - RAthena = derive2 { name="RAthena"; version="2.2.0"; sha256="068gljn17wwwzkd52yjg4kszg10innk401lm1sg6r4x3l6yppnn7"; depends=[data_table DBI reticulate uuid]; }; 3811 + RAthena = derive2 { name="RAthena"; version="2.3.0"; sha256="1yfh40g9i6974a4zma94k8d3q4gbjfxr6h0agxd4zk5bs5ld50ja"; depends=[data_table DBI reticulate uuid]; }; 3804 3812 RBF = derive2 { name="RBF"; version="2.1.0"; sha256="0062ckvrjfkkl5lfrshrr2cynrxsrp4zpdpl8nij06hm00i3gfs5"; depends=[]; }; 3805 3813 RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; 3806 3814 RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; ··· 3881 3889 RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; 3882 3890 RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; 3883 3891 RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; }; 3892 + RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; 3884 3893 RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; 3885 3894 RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2.8"; sha256="1y70fs8d7vldwijgzny3awcvx97sghclyrb40dzvffli2q15ym9f"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; 3886 3895 RGF = derive2 { name="RGF"; version="1.0.8"; sha256="0nd38cn3248kgzknr0ba3wg5y1g15vh74y9y94i2bqr1vchf6xsm"; depends=[Matrix R6 reticulate]; }; ··· 3975 3984 RNGforGPD = derive2 { name="RNGforGPD"; version="1.1.0"; sha256="0zriv0pd86ciwrms95bbb9wh40xvxv20vla2hxbmaynfy1s1vd4j"; depends=[corpcor Matrix mvtnorm]; }; 3976 3985 RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; 3977 3986 RNOmni = derive2 { name="RNOmni"; version="1.0.0"; sha256="1zn0yswycvzc3bm5rd7n84b2jbb5rdl66m4x5miz9pv7h6wsckkv"; depends=[plyr Rcpp RcppArmadillo]; }; 3978 - RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; 3979 3987 RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; 3980 3988 RNeXML = derive2 { name="RNeXML"; version="2.4.5"; sha256="1wsl4xq9w5bp3wk69dw57bg0qcw1vs6ajwya4p0w1r00ck5pwrib"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; 3981 3989 RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; ··· 4043 4051 RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; 4044 4052 RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.7"; sha256="16xppv7pzqk6kriqd5ym313z1r61l13dzpxp2q2zi0ai23hjgg92"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; 4045 4053 RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; }; 4046 - RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-2"; sha256="1wrd9gf5g97w268fi4l4gif2ccfgzmra6nfa92y79rycv29vyjs4"; depends=[DBI]; }; 4054 + RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-3"; sha256="1fbixmnjp1kh6yiv8zhg8zi5ryvdf5j2jxv4agq5gcxf541s3g5x"; depends=[DBI]; }; 4047 4055 RPostgres = derive2 { name="RPostgres"; version="1.4.1"; sha256="1nh31z89f3ppsc26fsssjbp6x9zwakimvnmvbhrnd53726pc7hkz"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; 4048 4056 RPresto = derive2 { name="RPresto"; version="1.3.7"; sha256="1iyprqlr0c73j63p0bc98bfq6dcmm1kzcj86q4y34vvwjqcbb99c"; depends=[DBI httr jsonlite openssl purrr Rcpp stringi]; }; 4049 4057 RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; ··· 4060 4068 RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; 4061 4069 RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; 4062 4070 RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; 4063 - RRPP = derive2 { name="RRPP"; version="1.1.0"; sha256="0wfh4vq95cksks64dsmq5vckqcrpj6nf969zlf256kq7nv8spglp"; depends=[ape ggplot2 Matrix]; }; 4071 + RRPP = derive2 { name="RRPP"; version="1.1.1"; sha256="1y3j577dxsgalc56p1hhaslc5p7jxxm0pc0gv1yz79p778xdnfhs"; depends=[ape ggplot2 Matrix]; }; 4064 4072 RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; 4065 4073 RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; 4066 4074 RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; ··· 4072 4080 RSAGA = derive2 { name="RSAGA"; version="1.3.0"; sha256="1y1zhy2bxkfsv8vmnxjdg9i5rqkvs32kw8h5z1mclv953srgkpn9"; depends=[gstat magrittr plyr rgdal shapefiles stringr]; }; 4073 4081 RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; 4074 4082 RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; 4075 - RSC = derive2 { name="RSC"; version="2.0"; sha256="0ypnns7y7kid7c7ff63vmmy0hm21h8np98vzkgkrpcx73jckll25"; depends=[doParallel foreach Matrix]; }; 4083 + RSC = derive2 { name="RSC"; version="2.0.1"; sha256="0qb4sm6mrrphb5986jvgzw7lr9fchhm4r09a3dw9nlxzql5gn4zg"; depends=[doParallel foreach Matrix]; }; 4076 4084 RSCAT = derive2 { name="RSCAT"; version="1.1.3"; sha256="08p4gywh1g13mwcmvp046ybz410jyrzi505rdqr8yirjpk59bw1p"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; 4077 4085 RSDA = derive2 { name="RSDA"; version="3.0.9"; sha256="12ychaaa1n5gam93f5kpxsvsfc9x07znzzz9nrx8bsvgmq4znqf9"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn labelled magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect vctrs XML]; }; 4078 4086 RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; ··· 4175 4183 RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; 4176 4184 RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; 4177 4185 RandomFields = derive2 { name="RandomFields"; version="3.3.10"; sha256="0jcjb5j70s3xk8nb8hc1jkzg24d41y7h5yhch79g31ch4rvfcbgp"; depends=[RandomFieldsUtils sp]; }; 4178 - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.4"; sha256="1ql4dxly5qbg87z4pcqffslmamcv869knnmjf1hviiy5dhvzy45f"; depends=[]; }; 4186 + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.6"; sha256="17hwdiq4xx0yn6kali8ydh1i4nnszvyhjp4ksryr0856dihl83pj"; depends=[]; }; 4179 4187 RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; 4180 4188 Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; 4181 4189 RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; ··· 4243 4251 RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; 4244 4252 RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.0"; sha256="1djyiqj7k96csrbzql5gmi5dca3c8rf3ymskfskrx62zpxmn4xic"; depends=[distr distrEx Hmisc IndexNumR lme4 randtests Rcmdr tcltk2 tseries]; }; 4245 4253 RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; 4246 - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.4-3"; sha256="0rw8nxh714cb3p448hrxad61l2zrmkvhxba912c5m9qjrx5pnhq5"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; 4254 + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.5-1"; sha256="0727z23byqsi5bdfp2wya4ymlbh39q8hsn4ij162lg0wfpm28wzd"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; 4247 4255 RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.1"; sha256="1cv580ar1kp0174h2mcg05nrr1d8sdlmimhyzk908gjhghmi6ahj"; depends=[Rcmdr WorldFlora]; }; 4248 4256 RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; 4249 4257 RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; ··· 4282 4290 RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; 4283 4291 RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.1"; sha256="0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a"; depends=[Matrix Rcpp]; }; 4284 4292 RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; 4285 - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.17.0.1"; sha256="1zxvzka4jbn64cgafd77s6wx6zhv3ngmzqws2d74hmf7akcyys19"; depends=[Rcpp RcppArmadillo]; }; 4293 + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.0.1"; sha256="0n59wh9sz723i9c3p7j6ca0ay20fxra1215xczzwgk492iqravyi"; depends=[Rcpp RcppArmadillo]; }; 4286 4294 RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; 4287 4295 RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; 4288 4296 RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; ··· 4301 4309 RcppNumerical = derive2 { name="RcppNumerical"; version="0.4-0"; sha256="1a92fql6mijhnr1kxkcxwivf95pk9lhgmhzkshs51h0ybfv5krik"; depends=[Rcpp RcppEigen]; }; 4302 4310 RcppParallel = derive2 { name="RcppParallel"; version="5.1.4"; sha256="10pa9vaz7p4m6hjca2cpy6vj7rvgly4zv0q1g2xfsmcchyk4bdbn"; depends=[]; }; 4303 4311 RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; 4304 - RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.4"; sha256="13mbzjg8g59gydhgli632gnp9kkqi0wss6vgj3dqkk557bi0xj6c"; depends=[BH Rcpp]; }; 4312 + RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.0"; sha256="0nclclhrhvdma8s07jly0xrmaf8iqigln137wmjnsmj6hg7r8ph9"; depends=[BH Rcpp]; }; 4305 4313 RcppRedis = derive2 { name="RcppRedis"; version="0.1.11"; sha256="0aill5ng6ifcafsij1nsqcchca8sxdd87645c45sx7dznpsgrhvj"; depends=[BH RApiSerialize Rcpp]; }; 4306 4314 RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; 4307 4315 RcppSMC = derive2 { name="RcppSMC"; version="0.2.5"; sha256="1jhxyvbgny52kvck276i07g1zz3lzzjw1w2q4xlb50xqwlbks4r0"; depends=[Rcpp RcppArmadillo]; }; ··· 4350 4358 RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.1"; sha256="0l837hmcn1gwisn1y9q745grg1fyrdbx44jhj81475h2zdn8dbs4"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; 4351 4359 RecordTest = derive2 { name="RecordTest"; version="2.1.0"; sha256="0a5hbhqx97kllwf5k6lrhcqixhqqj8ndklcvpmsp9jdf011b1100"; depends=[ggplot2]; }; 4352 4360 Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; 4353 - RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.3"; sha256="0p6d40ba5a3ndh12lrxj2i23xlspw6nygmsh3zsnjmjw4bg3dir0"; depends=[RJSONIO rlang]; }; 4361 + RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.5"; sha256="09f815av0sn9cz5n3l02k1rrl91d4f67xkwqpdpadw7hnv516pwf"; depends=[RJSONIO rlang]; }; 4354 4362 RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; 4355 4363 Rediscover = derive2 { name="Rediscover"; version="0.3.0"; sha256="0396shg9gf0r7q5jlrab5mr003fz7kj8xdq5chnzmild6kwyq3sk"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin speedglm]; }; 4356 4364 Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; ··· 4372 4380 ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; 4373 4381 RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; 4374 4382 RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; 4383 + RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; 4375 4384 Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; 4376 4385 Replication = derive2 { name="Replication"; version="0.1.2"; sha256="1za7zcdaf839xf8hxy4rcrr1p80n6a3ywb2bsl3wikwa0pxdvvbh"; depends=[blavaan lavaan MASS mice quadprog rjags runjags]; }; 4377 4386 ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.1.0"; sha256="0l74mihpmf2yxsacyldfh93hiccs2mmjn3hls6dmigkm6k6n5wkk"; depends=[]; }; ··· 4438 4447 Rmixmod = derive2 { name="Rmixmod"; version="2.1.5"; sha256="0cl0bl7554abjwz2as8gqvrzqswlw5727dac5302p7ksy3id9a1j"; depends=[Rcpp RcppEigen]; }; 4439 4448 RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; 4440 4449 Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; 4441 - Rmpfr = derive2 { name="Rmpfr"; version="0.8-5"; sha256="1a37zaahcyccb5kgad98z4dh9n75vffmiziv4al8axvihxqs5hjn"; depends=[gmp]; }; 4442 - Rmpi = derive2 { name="Rmpi"; version="0.6-9.1"; sha256="1j8akqjan59yzwx2s1zxc214qyd323fd2i2dhgq0n11mb6ajmq4r"; depends=[]; }; 4450 + Rmpfr = derive2 { name="Rmpfr"; version="0.8-7"; sha256="1ljpbxvm4agbxnab5dfffbpw5k964hy3gw57dzydq1gpbxwdphlk"; depends=[gmp]; }; 4451 + Rmpi = derive2 { name="Rmpi"; version="0.6-9.2"; sha256="06mxqgrimhfsag5giv810c7ycdbaycqs4qcj41pnfbj0jypw32im"; depends=[]; }; 4443 4452 Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; 4444 4453 RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; 4445 4454 Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; ··· 4469 4478 RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; 4470 4479 RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; 4471 4480 RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; 4472 - Rodam = derive2 { name="Rodam"; version="0.1.8"; sha256="13vp6mmqzlfksva8zbjz16chnx1wa7g5nscqhk1q00n87s85zp6x"; depends=[RCurl]; }; 4481 + Rodam = derive2 { name="Rodam"; version="0.1.10"; sha256="07ydws3b4z88v9iah3wyj3y5ar89f72g54qlz0h2p56785jz0jci"; depends=[httr]; }; 4473 4482 Rogue = derive2 { name="Rogue"; version="2.0.0"; sha256="1dxyxgwy0hylbbgi9vc6g8cll2qxim2wl9zva643g4aq4da5wwsg"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; 4474 4483 RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; 4475 4484 RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; ··· 4523 4532 RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; 4524 4533 Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; 4525 4534 Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; 4526 - Runuran = derive2 { name="Runuran"; version="0.34"; sha256="0r6nljacqvn1hlya0vrrfm7hbxydk0iw71dgrzs5djl4dmiw3kal"; depends=[]; }; 4535 + Runuran = derive2 { name="Runuran"; version="0.35"; sha256="15yndyw3rlxkb1mqq8db5csc6xl1zjyhrgzgx4b7iln59l3dgwfr"; depends=[]; }; 4527 4536 Rvcg = derive2 { name="Rvcg"; version="0.20.2"; sha256="04kwn7hp1gyw2daxg2vwfalhggj7x3vl03qd9m0wr5nsccjd29cy"; depends=[Rcpp RcppArmadillo RcppEigen]; }; 4528 4537 Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; 4529 4538 Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; ··· 4535 4544 Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; 4536 4545 Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; 4537 4546 RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-4"; sha256="0qyhxqd5yi4d1prj0i4g3k29zi0mx6wkjx24ynb4arxw6h1vabh4"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; 4538 - RxODE = derive2 { name="RxODE"; version="1.1.1"; sha256="1v3865wgw967z3kgri9f11s5jg0yhy90zxjjncfa8p4mpvi8w19w"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; 4547 + RxODE = derive2 { name="RxODE"; version="1.1.2"; sha256="12x8mi2d4s1qpqic8fp2axgn1gj4nfylsp4i5wkl1if6876kl3ip"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; 4539 4548 RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; 4540 4549 Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; 4541 4550 Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; ··· 4605 4614 SCtools = derive2 { name="SCtools"; version="0.3.1"; sha256="0vsv9ipz0ys8nrvg7rwr23svqlc5lvjpa6yss79rnjzxarjcyjjz"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; 4606 4615 SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; }; 4607 4616 SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; 4608 - SDAResources = derive2 { name="SDAResources"; version="0.1.0"; sha256="0ixz7k9bmwr0n8h71ny5di74gr7yqravzyzji4wdl4yh4siynndy"; depends=[]; }; 4617 + SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; 4609 4618 SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; 4610 4619 SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; 4611 4620 SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; ··· 4699 4708 SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; 4700 4709 SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; 4701 4710 SNPassoc = derive2 { name="SNPassoc"; version="2.0-2"; sha256="16raq5nkm24xqfshncwmf46z2naf2fcixgjs9b7gy1368wn3ahzl"; depends=[BiocStyle ggplot2 haplo_stats mvtnorm plyr poisbinom survival tidyr]; }; 4711 + SNPfiltR = derive2 { name="SNPfiltR"; version="0.1.0"; sha256="1s6yj71yz4rkbpp27by5sb4lkcwcvyw7zj10wlzgfrm8sy3vv2wj"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; 4702 4712 SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; 4703 4713 SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; 4704 4714 SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; ··· 4719 4729 SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; 4720 4730 SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; 4721 4731 SPARSEMODr = derive2 { name="SPARSEMODr"; version="1.1.0"; sha256="03yk46f5yipzascgihh4pihgycvl5ikr6jpb23h5p6snxaz1p1cp"; depends=[data_table future future_apply geosphere lubridate Rcpp tidyverse viridis]; }; 4722 - SPARTAAS = derive2 { name="SPARTAAS"; version="1.0.0"; sha256="1kdb1acm6f7vzl8y9r6ypzy7n5ixlxh7snm7yqii8959dg06nfjw"; depends=[ape cluster colorspace crayon dplyr explor FactoMineR foreign fpc ggdendro ggplot2 htmlwidgets ks leaflet maptools mapview markdown plotly rgdal rstudioapi scatterD3 shiny shinydashboard shinyjqui shinyjs shinythemes shinyWidgets sp stringr tidyr]; }; 4732 + SPARTAAS = derive2 { name="SPARTAAS"; version="1.1.0"; sha256="0l8ffpad4iq6jdgb4w4lhsq1v4ccjz1485hi018jwd76kr2m0h8z"; depends=[ape cluster colorspace crayon dplyr explor FactoMineR foreign fpc ggdendro ggplot2 htmltools htmlwidgets ks leaflet maptools mapview markdown plotly rgdal rstudioapi scatterD3 shiny shinydashboard shinyjqui shinyjs shinythemes shinyWidgets sp stringr tidyr]; }; 4723 4733 SPAS = derive2 { name="SPAS"; version="2020.1.1"; sha256="1bvnyxg3npxv63kikmr30jgc14f1s1a5vfh40qs50nbzq84pl6bx"; depends=[BB MASS Matrix msm numDeriv plyr RcppEigen TMB]; }; 4724 4734 SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; 4725 4735 SPAtest = derive2 { name="SPAtest"; version="3.1.2"; sha256="1x5r4a6jnizhhazxywb2cf2jj2rx6rfynl6xcscmlix6n394xmxk"; depends=[]; }; ··· 4736 4746 SPLICE = derive2 { name="SPLICE"; version="1.0.0"; sha256="1rmva1nl05f5dfv4nl7bcj6sa8rnpy9ikshasaa54r40217b5832"; depends=[SynthETIC zoo]; }; 4737 4747 SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; 4738 4748 SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; 4739 - SPOT = derive2 { name="SPOT"; version="2.5.8"; sha256="1lznzh9mwxyqfbqyx7082jkvcb1f4c8zk0667c1r3ivdknmchr9n"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; 4749 + SPOT = derive2 { name="SPOT"; version="2.5.12"; sha256="1pnckqf2j7wq8mkzvvac98m77nkm918ddzvpwv47v4g8zlgl0p30"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; 4740 4750 SPOTMisc = derive2 { name="SPOTMisc"; version="1.2.18"; sha256="0k23bpnac9fzkin1fa23kix21jid6ycv3akj7vxhgcx64mslvbkm"; depends=[benchmarkme callr emoa ggsci jsonlite keras mlr plotly RColorBrewer rpart_plot sensitivity SimInf smoof SPOT]; }; 4741 4751 SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; 4742 4752 SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; ··· 4765 4775 SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; 4766 4776 SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; 4767 4777 SSN = derive2 { name="SSN"; version="1.1.15"; sha256="057lh2ym82ff3c25vyh97csns4jwlbvxwc4jai0i4yplxf0ccmha"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; 4778 + SSNbayes = derive2 { name="SSNbayes"; version="0.0.1"; sha256="0kp7c4pynisqji6lfwnklsvjbwx44424qkyd4syhsn3rrr510ph5"; depends=[dplyr plyr rstan SSN]; }; 4768 4779 SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; 4769 4780 SSP = derive2 { name="SSP"; version="1.0.1"; sha256="0ccg81rsjki1fcqvj6lgmmmy5yw1gxy8khajl1i80qyi4v7ny9hk"; depends=[ggplot2 sampling vegan]; }; 4770 4781 SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; ··· 4806 4817 SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; 4807 4818 SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; 4808 4819 SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; 4809 - SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.1"; sha256="10h6s7a4020g4mvifk3w1bfljmlv9pxnz5a0hmjjbgwhfh5hi55g"; depends=[mvtnorm]; }; 4820 + SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; 4810 4821 SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; 4811 4822 SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-1"; sha256="01kjm45pc1zfy2xlp9fhynv4x2mzsgjwymr5j7narpmdsm14mxcx"; depends=[doParallel formattable memoise pbapply]; }; 4812 4823 SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; ··· 4900 4911 SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; 4901 4912 SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; 4902 4913 SimEngine = derive2 { name="SimEngine"; version="1.0.0"; sha256="15rdwpbcypymk9s34iwqzqzqcailhsldzq6c2d9b6jgsp81yy7qk"; depends=[data_table dplyr magrittr pbapply rlang]; }; 4903 - SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="1.0.2"; sha256="0h3v2lbb3my78brhc5yxk448pr2rlrlyd7l32lczh76j4hx0k0bw"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; 4914 + SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; 4904 4915 SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; 4905 4916 SimInf = derive2 { name="SimInf"; version="8.4.0"; sha256="0fpi5fnr4pgdq30s4p64kv1nl20znxnqk61b2cr7z2pj6yhqa265"; depends=[digest MASS Matrix]; }; 4906 4917 SimJoint = derive2 { name="SimJoint"; version="0.3.7"; sha256="03xf8n1fbbq63wz8kyj19h9vqz14z463cv8xqhmaknlamnnyhis5"; depends=[Rcpp RcppArmadillo RcppParallel]; }; ··· 4982 4993 SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.9"; sha256="1wq09r2zhk4in6d98i9g3lp8ajsazabxwgwlrdnp8n7dbpslgp44"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp reproducible rgeos sp]; }; 4983 4994 SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0.1"; sha256="0w2jxaz2kxfksyss5vy6xy499p8jg8lpqlykwgm2srp1fd2l3rs9"; depends=[Rcpp RcppArmadillo]; }; 4984 4995 SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; 4985 - SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.0"; sha256="0cpibfj106is7k0wq8z21r110wpxpqs393ic9hxx5yx386z5rcav"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; 4996 + SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; 4986 4997 SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; 4987 4998 SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; 4988 4999 SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; ··· 5157 5168 TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; 5158 5169 TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; }; 5159 5170 TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; 5171 + TDbook = derive2 { name="TDbook"; version="0.0.3"; sha256="13jx35mzppvlr6yjrg04zxn6qbhzyfzrwjnzkijxhrk9p46acs7j"; depends=[]; }; 5160 5172 TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; 5161 5173 TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; 5162 5174 TEAM = derive2 { name="TEAM"; version="0.1.0"; sha256="1yj7fw935rr7fh7h2p4ra8d3ynz5c6b30fqzm1djgav1k84wcin2"; depends=[ggplot2 ks plyr]; }; ··· 5181 5193 TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; 5182 5194 TMTI = derive2 { name="TMTI"; version="0.1.0"; sha256="16fa512f8hhfsinn57p98yvw58hjymki7xnvrfz9fidkqva0wm1x"; depends=[dplyr]; }; 5183 5195 TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; 5184 - TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; }; 5185 5196 TOC = derive2 { name="TOC"; version="0.0-5"; sha256="0zk6j1yc4gpvkswnfrlyfvqc69wr4q3ys59y7v03fhzwasqj0an2"; depends=[bit raster rgdal]; }; 5186 5197 TOHM = derive2 { name="TOHM"; version="1.4"; sha256="15i9hrvxlnwbs9vrsyrfhnm4xwmi97hss2da0xqs1xj5nmzwymqh"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; 5187 5198 TOSTER = derive2 { name="TOSTER"; version="0.3.4"; sha256="1pxcvlw2nhh1sv0d662xc61rykf7kz7f4xjq3yrqf119gjcmps5s"; depends=[ggplot2 jmvcore R6]; }; ··· 5360 5371 TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; 5361 5372 TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; 5362 5373 Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; 5363 - TukeyC = derive2 { name="TukeyC"; version="1.3-3"; sha256="0bdnfr44hk4c1yh7i9ya95gwbwnplj3hf0k0pl1wm4ghiav39vcq"; depends=[doBy]; }; 5374 + TukeyC = derive2 { name="TukeyC"; version="1.3-4"; sha256="1ly09pll86zkn6m8rc6d66f3d7hf98fiij0psaigq6wdgf5an8ig"; depends=[doBy xtable]; }; 5364 5375 TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.4"; sha256="1zx6gm0s0nardhb3xm3c53pd46kq6grsknpldnjjfhn3029a3nr7"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; 5365 5376 TunePareto = derive2 { name="TunePareto"; version="2.5.1"; sha256="025457qm8blj5jc59qx1wvlcw21b4v9371hlrcf9gkvisksjqvf1"; depends=[]; }; 5366 5377 TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; 5378 + Twitmo = derive2 { name="Twitmo"; version="0.1.1"; sha256="1m1021rrc44y4f68cnsn6zl6sfbpgw4i31p4g2f1nlbd4cmnv2ls"; depends=[dplyr jsonlite magrittr maps plyr quanteda quanteda_textstats readr rlang rtweet stm stopwords stringr tidyr topicmodels]; }; 5367 5379 TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; 5368 5380 TwoArmSurvSim = derive2 { name="TwoArmSurvSim"; version="0.2"; sha256="0isb1nmm6hxwn6p52an1axj30ilkr5c8xi86zx2b8acivdz2xr12"; depends=[blockrand dplyr simsurv survival]; }; 5369 5381 TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; ··· 5457 5469 VUROCS = derive2 { name="VUROCS"; version="1.0"; sha256="1r4hq7az50v7lbyx5w6b4zs2kwi5cypqn9k6ac4kr8jr3jlyanr3"; depends=[doParallel foreach Rcpp RcppArmadillo]; }; 5458 5470 VWPre = derive2 { name="VWPre"; version="1.2.4"; sha256="1hhpqxzh9h5dy45r04l1fa1k4a14s0m6z6fhfg22kpwpryszbc44"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; 5459 5471 VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; 5460 - VancouvR = derive2 { name="VancouvR"; version="0.1.6"; sha256="1c9wnqv64gdaj74nwn106zmaz03r2i3na8j4m5akfmis1yhj0qgf"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; 5472 + VancouvR = derive2 { name="VancouvR"; version="0.1.7"; sha256="12njm15ah307rsncnmckpx05d4cncqj0paa40xdgp7mfz821s36c"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; 5461 5473 VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; }; 5462 5474 VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; 5463 5475 VarRedOpt = derive2 { name="VarRedOpt"; version="0.1.0"; sha256="0h44m8850q4aksrqj11yr2a2qj37w8fhv0plpvdzcl087ifyj0g9"; depends=[]; }; ··· 5471 5483 Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; 5472 5484 VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.8"; sha256="0jjxdwcj0n6kk5l7hw4zibpikqxhkkik5819qv75z4gqdgg0fgch"; depends=[MASS]; }; 5473 5485 VecStatGraphs3D = derive2 { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; 5474 - VennDiagram = derive2 { name="VennDiagram"; version="1.6.20"; sha256="1ic1jaxzw98si2p4n1fl4n3myhd7fpw0njb634cwhviwybzv6775"; depends=[futile_logger]; }; 5486 + VennDiagram = derive2 { name="VennDiagram"; version="1.7.0"; sha256="1l9mmc8wwn885l2b13kshhrkz53pqigcw6d8gklvv92fx5m5cdvm"; depends=[futile_logger]; }; 5475 5487 VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; 5476 5488 VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; 5477 5489 VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; ··· 5551 5563 WorldFlora = derive2 { name="WorldFlora"; version="1.9"; sha256="1v3gpwkygn0b248fd7ghxcqzymdb50snlh4bgrr9j3cp04y8x91f"; depends=[]; }; 5552 5564 WrightMap = derive2 { name="WrightMap"; version="1.2.3"; sha256="0i84xkd1agyp45r84zsk8vvc02ln8qhxvl4n72xjqib12b38kqzl"; depends=[]; }; 5553 5565 WriteXLS = derive2 { name="WriteXLS"; version="6.3.0"; sha256="0ssjdv7vr66sl1yfg0l38xddrvrfzhf7vdq342izc22bprx9h78b"; depends=[]; }; 5566 + WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; 5554 5567 WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; 5555 5568 XBRL = derive2 { name="XBRL"; version="0.99.19"; sha256="0l25lfy8vzkgdq7i4bafh8b1246f8p2a6sy7c4kswzz4bnxnrihc"; depends=[Rcpp]; }; 5556 5569 XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; ··· 5560 5573 XML = derive2 { name="XML"; version="3.99-0.8"; sha256="0l3bsgqw4bicv3sl2bfag7p4rh1y2pcyg0ajr73kkbg85qf6j7q8"; depends=[]; }; 5561 5574 XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; 5562 5575 XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; 5563 - XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; }; 5564 5576 XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; 5565 5577 XRJulia = derive2 { name="XRJulia"; version="0.9.0"; sha256="0s3g6fkam6hj03mxvw75nzsq3zvz84b71jhrw3v64mdngazdv7zm"; depends=[XR]; }; 5566 5578 XRPython = derive2 { name="XRPython"; version="0.8"; sha256="0alg33spiaqf3jwg1qn543nxvbfaqv8gvf5px3grhbgrcmi5mcmj"; depends=[reticulate XR]; }; ··· 5599 5611 aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; }; 5600 5612 aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; 5601 5613 aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; 5602 - aRtsy = derive2 { name="aRtsy"; version="0.1.3"; sha256="1wivi2c3vmvybb1fyi4kg0lw8z971yz4la4hbbqc6jl5spy88f11"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; 5614 + aRtsy = derive2 { name="aRtsy"; version="0.1.4"; sha256="0b7wg4jhykxra602g49rqx4mppnfjy2iannhi38idlz9h7f3wbl4"; depends=[dplyr e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; 5603 5615 aRxiv = derive2 { name="aRxiv"; version="0.5.19"; sha256="0rik0jkh1xi9fizzw46xmcw139g6nla072p7f8jgvzbhp7k58ba2"; depends=[httr XML]; }; 5604 5616 aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; 5605 5617 aSPU = derive2 { name="aSPU"; version="1.50"; sha256="0rh21dj5913nxhdndqfhxvm6mvwnacraf7l3bac09awm7cfhk511"; depends=[fields gee MASS matrixStats mvtnorm]; }; ··· 5712 5724 adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; 5713 5725 adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; 5714 5726 adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; 5715 - admisc = derive2 { name="admisc"; version="0.18"; sha256="0lvyhvdw0glr8gpfcmprh23rzj6rmw9gmgy0p5vr1rsykp82hcis"; depends=[]; }; 5727 + admisc = derive2 { name="admisc"; version="0.19"; sha256="0gyk0yazdg5gb3m5ln9m6mv9pv2klb2in79gnc2vzq8ld7cc82vw"; depends=[]; }; 5716 5728 admix = derive2 { name="admix"; version="0.3.2"; sha256="0si2avjqw6rmv2ndsj1ppmqkafnsjx06m2h4jxfrwf2kxfp2rrn1"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; 5717 5729 admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; 5718 5730 admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; ··· 5739 5751 afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; 5740 5752 agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; 5741 5753 aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; 5742 - aghq = derive2 { name="aghq"; version="0.2.1"; sha256="0c4yk2vcycxryrs0g5jnfsbwr0f2nwq660mmx3vsfsdqml2qdv5w"; depends=[Matrix mvQuad polynom rlang]; }; 5743 5754 aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; 5744 5755 agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; 5745 5756 agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; ··· 5883 5894 apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; 5884 5895 apache_sedona = derive2 { name="apache.sedona"; version="1.1.0"; sha256="09g4h9fpymh3kckclhmhp359346pi7dbva8p2zpvnbgy818nil77"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; 5885 5896 apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; 5886 - apcf = derive2 { name="apcf"; version="0.1.6"; sha256="1m702y9rrhwbcl7y5f2gdmczi8bfryimckxbgqidnvbr3v084slp"; depends=[Rcpp]; }; 5897 + apcf = derive2 { name="apcf"; version="0.1.7"; sha256="071gax2w9b0l74vls59y6syg2swiagz5xkab1x2wmmxk16y49l1s"; depends=[Rcpp]; }; 5887 5898 apcluster = derive2 { name="apcluster"; version="1.4.8"; sha256="0lzf2jqm56i74wif6x5sw3j0w2qc4sni49zq2fgbl89b7lwkvchj"; depends=[Matrix Rcpp]; }; 5888 5899 apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; 5889 5900 ape = derive2 { name="ape"; version="5.5"; sha256="16i9sny7j90zi0k3znfff5lpnj5naxcy1142v73zxslr9g3h3am3"; depends=[lattice nlme Rcpp]; }; 5890 5901 apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; 5891 5902 apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; 5892 - apexcharter = derive2 { name="apexcharter"; version="0.2.0"; sha256="1dlxnsfl629mrcjxfznhhw41i19pzrwmdzk2zc6rp04q621bxg6n"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; 5903 + apexcharter = derive2 { name="apexcharter"; version="0.3.0"; sha256="1ds2qil4jwvfbiv39agpiwq3r54pbi4963n6i25nzfkdclw3hbjl"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; 5893 5904 aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; 5894 5905 apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; 5895 5906 aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; ··· 5897 5908 aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; 5898 5909 apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; 5899 5910 apollo = derive2 { name="apollo"; version="0.2.5"; sha256="12x09fbpavvgsnx0pf7q9w9glc8hb7s8cywvm0ym05v64r1v2dca"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB tibble]; }; 5900 - appler = derive2 { name="appler"; version="0.1.1"; sha256="1av4gbw11m18b8n1p4gwmn5x79pfdv4bl3w7fiziw3qvb6nj8ak5"; depends=[glue httr jsonlite lubridate rvest xml2]; }; 5911 + appler = derive2 { name="appler"; version="0.1.2"; sha256="03sivpv12ssn7dzq780rb4fg4nc7da7nlk6cijzq9yadxgv53svm"; depends=[glue httr jsonlite rvest xml2]; }; 5901 5912 applicable = derive2 { name="applicable"; version="0.0.1.2"; sha256="0yzfk4ajdx4l3xivf6v9vn7fqvzfma4842cvjixrng83p2v25sdq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; 5902 5913 appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; 5903 5914 approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; ··· 5921 5932 archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; 5922 5933 archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; 5923 5934 archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; 5924 - archive = derive2 { name="archive"; version="1.1.1"; sha256="1qr622hzbjb0csfhmdyp0xp2340nxz0r7g0zn0cfdb1jh5j70dx9"; depends=[cli cpp11 glue rlang tibble]; }; 5935 + archive = derive2 { name="archive"; version="1.1.2"; sha256="1rvjix90yxlwlfy0pdfjg81jnj36sqp5zyxw1phv4fa65b4vh4nf"; depends=[cli cpp11 glue rlang tibble]; }; 5925 5936 archiveRetriever = derive2 { name="archiveRetriever"; version="0.1.0"; sha256="1pfq63db0g818vavf9syf2psqvj7xk9n243hqilf21ijgqwfh165"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; 5926 5937 archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; 5927 5938 archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; ··· 5936 5947 arfima = derive2 { name="arfima"; version="1.7-0"; sha256="0kj8qv6m2fcdw8x735n8fk9cynm0jxi5v9hif0f879sxk6qkxb9y"; depends=[ltsa]; }; 5937 5948 argo = derive2 { name="argo"; version="3.0.1"; sha256="1q7gbyk2f8vimwzdmd1mfqyaql2gyawywilwzs6g1716gbk3gd80"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; 5938 5949 argoFloats = derive2 { name="argoFloats"; version="1.0.3"; sha256="085bw6jwm73yryibd5znzs4a0qf1f9w2iha15kkpx517y4z71pgn"; depends=[oce]; }; 5939 - argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; }; 5950 + argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; }; 5940 5951 argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; 5941 5952 argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; 5942 5953 argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; 5943 - argparse = derive2 { name="argparse"; version="2.1.1"; sha256="1k6v35g3bppcr896h4v39zh1sxxia1bxxh29xv0mhad1nvmv25j9"; depends=[findpython jsonlite R6]; }; 5954 + argparse = derive2 { name="argparse"; version="2.1.2"; sha256="1cz5qlxw3v8smd5vb00wlzy02mx5i0infm5hnq55hnakffd3b5wr"; depends=[findpython jsonlite R6]; }; 5944 5955 argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; 5945 5956 ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; 5946 5957 ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; ··· 5959 5970 arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; 5960 5971 arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; 5961 5972 arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; 5962 - arrow = derive2 { name="arrow"; version="5.0.0.2"; sha256="1ajkcmasj22j5k15ms7iyd1rg9qpdj5jya6nmhzh8z4iiv7gy13j"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; 5973 + arrow = derive2 { name="arrow"; version="6.0.0.2"; sha256="110ixq59wgiwwp7ziqhw124qcsdl7la2nlx9gvzk7jhyhn98d03n"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; 5963 5974 ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; 5964 5975 arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; 5965 5976 arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; ··· 5987 5998 asnipe = derive2 { name="asnipe"; version="1.1.16"; sha256="0ky4v85gry8r265z8p7mi9kzq6j3s032jg4wddkzjjqgxzyzjl5y"; depends=[MASS Matrix]; }; 5988 5999 aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; 5989 6000 aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; 5990 - aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; }; 5991 6001 asremlPlus = derive2 { name="asremlPlus"; version="4.3-21"; sha256="0clyzdvxhwmg7w70l0yacsc50dd6284spdwglyrdfxkz85xdhwqg"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape sticky stringr]; }; 5992 6002 assemblerr = derive2 { name="assemblerr"; version="0.1.0"; sha256="13vhn73v2429smf4av414xrm9vmbcxwhfgbq33zfdn7qyrj8wpv1"; depends=[cli glue magrittr purrr rlang tidyselect vctrs]; }; 5993 6003 r_assert = derive2 { name="assert"; version="1.0.1"; sha256="0n5l48yb0djl6rdj50p1dslpw3c5kbi15yz6z6rdgic575gjwzdc"; depends=[]; }; ··· 6010 6020 assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; 6011 6021 assertr = derive2 { name="assertr"; version="2.8"; sha256="00764vv86r3bn4r85in4w637harffyw605fgq0dj6mrbrwcfb650"; depends=[dplyr MASS rlang]; }; 6012 6022 assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; 6013 - assignPOP = derive2 { name="assignPOP"; version="1.2.2"; sha256="0ws40rrz3zql8xsa0r8hgb81l75isglzsfhnb8jbvig6s9m058yi"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; 6023 + assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; 6014 6024 assignR = derive2 { name="assignR"; version="2.1.1"; sha256="10494lg0ph5c4ks2z2ndajx3fiwv2my4i32jg89l0z0dxgfaz7lf"; depends=[maptools mvnfast raster rgdal rlang sp]; }; 6015 6025 assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; }; 6016 6026 assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; ··· 6054 6064 audrex = derive2 { name="audrex"; version="1.0.1"; sha256="06r9gn3rdqxln197iyajdsx8ikq0m2hik171403y3dxxr5bf8jsf"; depends=[abind fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; 6055 6065 augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; 6056 6066 augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; 6057 - auk = derive2 { name="auk"; version="0.5.0"; sha256="0d7xvpnszsx5p5ik0i8xvzqazd8ll8sg0mwv80pd9gpgriwvpxv2"; depends=[assertthat countrycode dplyr httr magrittr rlang stringi stringr tidyr]; }; 6067 + auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; 6058 6068 aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; 6059 6069 auth0 = derive2 { name="auth0"; version="0.2.1"; sha256="077nqh28q3b9jb25fy0157l06zpx3x0rg4z5dz2dqsh88xy4nhqj"; depends=[htmltools httr shiny shinyjs yaml]; }; 6060 6070 auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; ··· 6078 6088 automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; }; 6079 6089 autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; 6080 6090 autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; 6091 + autostats = derive2 { name="autostats"; version="0.1.0"; sha256="0yia8hli3d8pafr82a8syzq35jq2jdjsl4w7dahnfaq6bjzkdzx2"; depends=[BBmisc broom broom_mixed Ckmeans_1d_dp dials dplyr flextable framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; 6081 6092 autostsm = derive2 { name="autostsm"; version="1.6"; sha256="086ndq164bbp7fczzwdx3ryva3qc2hnswm7mlig2jmn0w01ivwr0"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange zoo]; }; 6082 6093 autothresholdr = derive2 { name="autothresholdr"; version="1.3.11"; sha256="1w0lxi9bbnffx0gjmll98ki4zh7i6v8wbjd0ziwzca1qwq3z4a9i"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; 6083 6094 av = derive2 { name="av"; version="0.6.0"; sha256="0g6815y24h4la714a5bkj7nj4n39jycfynkli6y3jlijql96j2il"; depends=[]; }; ··· 6105 6116 azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; 6106 6117 b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; 6107 6118 bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; 6108 - bRacatus = derive2 { name="bRacatus"; version="1.0.4"; sha256="1sms54y3b2lkcdvn7hihil9wrxyhyvanisscg2xqdzjgr7wf30da"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgeos rworldmap sp]; }; 6119 + bRacatus = derive2 { name="bRacatus"; version="1.0.5"; sha256="1ir5q8q9kssbcakfi0lpixxgcmcla2p3j8a290p5h3zddbp41az6"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; 6109 6120 bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; 6110 6121 bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; 6111 6122 bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; ··· 6122 6133 backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; 6123 6134 backbone = derive2 { name="backbone"; version="1.5.1"; sha256="06awrjcs78h7i632v5dyfqj0gldnww4xkn4j0rffimf3aiwxm7l9"; depends=[igraph Matrix network PoissonBinomial]; }; 6124 6135 backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; 6125 - backports = derive2 { name="backports"; version="1.2.1"; sha256="1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2"; depends=[]; }; 6136 + backports = derive2 { name="backports"; version="1.3.0"; sha256="0bc14x4gyw4gnvm4hrvg5cmmrq449kfza3l14wdgp642ra8iw8sg"; depends=[]; }; 6126 6137 backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; 6127 6138 bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; 6128 6139 bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; ··· 6193 6204 bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; 6194 6205 bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; 6195 6206 bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; 6196 - bayesPO = derive2 { name="bayesPO"; version="0.2.0"; sha256="01j98m093jb7lsfb5iw2g0v5351sq0mdxvd37rwn2zjj8fmb4v4l"; depends=[coda Rcpp RcppEigen RcppProgress]; }; 6207 + bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; 6197 6208 bayesPop = derive2 { name="bayesPop"; version="8.1-3"; sha256="018nwm6nmg0cpgkmiiqijry59f1adx103wy5dgz8a64f9hj4nqdi"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; 6198 6209 bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; 6199 6210 bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; 6200 - bayesTFR = derive2 { name="bayesTFR"; version="7.0-5"; sha256="1a19n67bb3wk6ywmcdv19cg640d5vd7r8p3p6hpgc3njj1ifp5fl"; depends=[coda data_table MASS mvtnorm wpp2019]; }; 6211 + bayesTFR = derive2 { name="bayesTFR"; version="7.1-1"; sha256="0grkrcgn1x1qaajyamzlp7csmsmmslbjbmajk42m5g7cxxljvylr"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; 6201 6212 bayesZIB = derive2 { name="bayesZIB"; version="0.0.2"; sha256="0lwrgzfbp3cjjc462va2vv5s43lp9j9hmydg3g2qs9w92mc7m77d"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; 6202 6213 bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; 6203 - bayesanova = derive2 { name="bayesanova"; version="1.4"; sha256="1azr1yjigy3hygvzngs6b0m92kskxv0kga80j7ccsycawygmkjcs"; depends=[]; }; 6214 + bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; 6204 6215 bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; 6205 6216 bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; 6206 6217 bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; ··· 6218 6229 bayesmeta = derive2 { name="bayesmeta"; version="2.7"; sha256="1zl2y916jgl40mqzphgjwsqr4mbxvvggp0irirbb9nyzj5frqpjg"; depends=[forestplot metafor numDeriv]; }; 6219 6230 bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; 6220 6231 bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; }; 6221 - bayesmove = derive2 { name="bayesmove"; version="0.2.0"; sha256="1ir8zasnymfll6za35kzsgdfm6l5hryrss2aa3m07zzd2rb53xbc"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack move progress purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; 6232 + bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; 6222 6233 bayesnec = derive2 { name="bayesnec"; version="2.0.2"; sha256="1ps00byg0s0wf86w9nq6yhn4ak1ca6gmkafz3bmycr4alxhgjdqr"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; 6223 6234 bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; 6224 6235 bayesplot = derive2 { name="bayesplot"; version="1.8.1"; sha256="0aman4273i8hy3z0qay1nrsr7v27m4icm1j6f4w59ylix80l5myq"; depends=[dplyr ggplot2 ggridges glue reshape2 rlang tibble tidyselect]; }; ··· 6227 6238 bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; 6228 6239 bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; 6229 6240 bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; 6230 - bayestestR = derive2 { name="bayestestR"; version="0.11.0"; sha256="0bwfw1lh4yp8y77sfmxzqqqy5aw59q1lqhfcssa46ph6d4hyxwic"; depends=[datawizard insight]; }; 6241 + bayestestR = derive2 { name="bayestestR"; version="0.11.5"; sha256="0lz8mzacxgmll576p88654mrvlk4pzvhwwghvn5pm7zxisgx0kq0"; depends=[datawizard insight]; }; 6231 6242 bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; 6232 6243 bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; 6233 6244 baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; ··· 6251 6262 bcaboot = derive2 { name="bcaboot"; version="0.2-3"; sha256="0b1m4lwi9hwd4xswabzyy2svc91ppiym8bi9f1wj79w5sg2hxpn7"; depends=[]; }; 6252 6263 bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; }; 6253 6264 bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; 6254 - bcdata = derive2 { name="bcdata"; version="0.2.4"; sha256="07l47gpzd6r465xad1bc0w44yzy87qa3j0vpa6pv61h30pph43zh"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; 6265 + bcdata = derive2 { name="bcdata"; version="0.3.0"; sha256="13s8x7zr8650jzkjlripikha7sk4x70ld9pgxm057m2vqqplj8av"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; 6255 6266 bcf = derive2 { name="bcf"; version="1.3"; sha256="1f8szjgsyhnff3zzmmy7bnsam12ywj46n3fxsj1y3fn1m5wnd8mz"; depends=[Rcpp RcppArmadillo]; }; 6256 6267 bcfrailph = derive2 { name="bcfrailph"; version="0.1.0"; sha256="0l5v3bc8xw71cj012sbmq1f0glg7m545jzqyg01gzl8kbgm3lbbj"; depends=[survival]; }; 6257 6268 bcfrailphdv = derive2 { name="bcfrailphdv"; version="0.1.0"; sha256="06xzz5m4s5fp36j3saxmpw1p0bhh42cjd35cadwkk3vg836kj1na"; depends=[bcfrailph survival]; }; ··· 6362 6373 bidask = derive2 { name="bidask"; version="0.1.0"; sha256="1npiz3nmbly0lhha90b6v2ml8fmi32rdjr6bx7f008aa9p4cpcip"; depends=[xts zoo]; }; 6363 6374 bife = derive2 { name="bife"; version="0.7.1"; sha256="0d1hfzji3769nsa5xvlmn7sbn21igwx3aa7vxlcdn1b9ykh7fx76"; depends=[data_table Formula Rcpp RcppArmadillo]; }; 6364 6375 bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; 6365 - bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; 6376 + bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; 6366 6377 bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; 6367 6378 bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; 6368 6379 bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; ··· 6439 6450 bioRad = derive2 { name="bioRad"; version="0.5.2"; sha256="1kx1vh6p37170f1crylwyzap0c7s5d82rx7qqi95f8d26niqcjn9"; depends=[assertthat curl data_table fields ggmap ggplot2 lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; 6440 6451 bioacoustics = derive2 { name="bioacoustics"; version="0.2.7"; sha256="0jsvmx4kx1jx4ljrrax9v3nr3fs2r0kg4n1a0qbwcbfbgykqng87"; depends=[htmltools moments Rcpp stringr tuneR]; }; 6441 6452 bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; 6442 - biocompute = derive2 { name="biocompute"; version="1.0.6"; sha256="19armp8jc33b5j5avavifv2w454gmvp3nvwaxqh6dlqmjzms43lw"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; 6453 + biocompute = derive2 { name="biocompute"; version="1.1.0"; sha256="05pqrm1j0d21w70jnsf9zvh55h85i676xwvqzsk51llw52v16d4d"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; 6443 6454 biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; 6444 6455 biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; 6445 6456 biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; ··· 6492 6503 blaise = derive2 { name="blaise"; version="1.3.8"; sha256="1jvjli349rzyiij80ggb27fsqp0hd1fz2pw93rj6cssgipl911xl"; depends=[dplyr readr stringr tibble]; }; 6493 6504 blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; 6494 6505 blapsr = derive2 { name="blapsr"; version="0.5.5"; sha256="1h6bdlawb3wzfw0l62k8b440yvvdh2liylhlnf3jfhdh1fivxq95"; depends=[coda MASS Matrix RSpectra sn survival]; }; 6495 - blaster = derive2 { name="blaster"; version="1.0.3"; sha256="0ch03j5z1zlfs3jmp7p4pwhava89k9irixr1p3dx45090q05j3a1"; depends=[Rcpp]; }; 6506 + blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; }; 6496 6507 blastula = derive2 { name="blastula"; version="0.3.2"; sha256="084mk6xb8ivqrp8anvisfk8rvwi7qfrp5kmy66vpihmjmqh7dkyc"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; 6497 6508 blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; 6498 6509 blavaan = derive2 { name="blavaan"; version="0.3-17"; sha256="1rgi4wfwa6sh78vs7w1mpdfxi663840xg4kkqlgz28jscv64z8dd"; depends=[bayesplot BH coda future_apply lavaan loo Matrix MCMCpack mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; ··· 6520 6531 blogdown = derive2 { name="blogdown"; version="1.5"; sha256="08h4zsrw12xkllyx3czmpxjy1dnqr6vrk410zp7m75xzsbq5kg5q"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; 6521 6532 blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; 6522 6533 blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; 6534 + blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; 6523 6535 bltm = derive2 { name="bltm"; version="0.1.0"; sha256="1sx4ii65ddvdw45za8j320v1s9d1pz5k2gx979yymhyxi8fmq69z"; depends=[mvnfast Rfast]; }; 6524 6536 bmabasket = derive2 { name="bmabasket"; version="0.1.1"; sha256="1hgbl1x38snhzbh5j1qz81azkdwzmm4idacyyyrn895vl71ypfrn"; depends=[partitions Rcpp RcppArmadillo]; }; 6525 6537 bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; ··· 6536 6548 bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; 6537 6549 bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; 6538 6550 bmscstan = derive2 { name="bmscstan"; version="1.1.0"; sha256="1mr56ry9jzsd2z0zffcysy01bh62cg13hi4swdhdvwmjcsb5gq97"; depends=[bayesplot coda ggplot2 LaplacesDemon logspline rstan]; }; 6539 - bnclassify = derive2 { name="bnclassify"; version="0.4.5"; sha256="1ik3n0g6gw7504ryg5skwygyc545150r297gii4mr2zj252lf069"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; 6551 + bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; 6540 6552 bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; 6541 6553 bnlearn = derive2 { name="bnlearn"; version="4.7"; sha256="05r80arqvcmnkw20gffrfc2ypnqf6628c8y3xr8pxw3wkfxdf79f"; depends=[]; }; 6542 6554 bnma = derive2 { name="bnma"; version="1.4.0"; sha256="0wfz5faxgbci0n6kmgcazn0vjnsvn9l7lj4f63a3c0x6pb0yiir0"; depends=[coda ggplot2 igraph rjags]; }; ··· 6557 6569 bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; 6558 6570 boomer = derive2 { name="boomer"; version="0.1.0"; sha256="0nb58msk7ycim15ssjwig9i62x51ydnakq83jg6vcbqjg1a9anry"; depends=[crayon pryr rlang rstudioapi styler withr]; }; 6559 6571 boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; }; 6560 - boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; 6561 6572 boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; 6562 - boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.2"; sha256="0511vc6kbx3mijgknyzdc3jv2i1ay6wsc7660hd07xmvahqg8130"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; 6573 + boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; 6563 6574 boot_pval = derive2 { name="boot.pval"; version="0.3"; sha256="0pmp1wd12gzkpl2ank7yw7gd160aa5n07dxdy812vki6kjp3qd19"; depends=[boot car lme4 Rdpack survival]; }; 6564 6575 bootComb = derive2 { name="bootComb"; version="1.0.2"; sha256="1vnkn1xa8qz58srgk1i5m3m3skghw5klvp0q53ab45a420j49spj"; depends=[]; }; 6565 6576 bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; ··· 6572 6583 bootUR = derive2 { name="bootUR"; version="0.3.0"; sha256="12r2kfr4nwlc734vbx793vx4qhg8hiv3s99hj8k6h0b0fvj1w911"; depends=[Rcpp RcppArmadillo RcppProgress urca]; }; 6573 6584 bootcluster = derive2 { name="bootcluster"; version="0.2.5"; sha256="0jhq0f8a3lajhqksvxd3k703b50vzll43q9w4iaqv4ylsg9l6pyr"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; 6574 6585 bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; 6575 - bootnet = derive2 { name="bootnet"; version="1.4.3"; sha256="0zmv6wibqkdhffs937xa1xjz6xn6wb4hajpdl36sfkmw3cqfc9sm"; depends=[abind BDgraph corpcor dplyr ggplot2 glasso graphicalVAR gtools huge igraph IsingFit IsingSampler lavaan Matrix mgm mvtnorm NetworkToolbox networktools pbapply psychTools qgraph relaimpo tidyr]; }; 6586 + bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; 6576 6587 bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; 6577 6588 bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; 6578 6589 bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; ··· 6612 6623 brainR = derive2 { name="brainR"; version="1.6.0"; sha256="1l5rm6grslc6mivwh2fv3pznhy2cw16fz5695pmyfamzvsjggir1"; depends=[misc3d oro_nifti rgl]; }; 6613 6624 brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; 6614 6625 brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; 6615 - bravo = derive2 { name="bravo"; version="2.0.1"; sha256="1q7xd30hdmrdzfbjpz8vdj8g6rgqaixcjfabs7afp3kccgv4k6bf"; depends=[Matrix Rcpp]; }; 6626 + bravo = derive2 { name="bravo"; version="2.1.1"; sha256="1ikfby3sbkbzk34kc2nsbxyqfdl9qw182rf9zj5zk6yi8s4zsbsq"; depends=[Matrix Rcpp]; }; 6616 6627 brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; 6617 6628 breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; 6618 6629 breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; ··· 6640 6651 brokenstick = derive2 { name="brokenstick"; version="1.1.0"; sha256="02n8fv84cfj32mg08ylpg19alf69kkpknpvd6mx86lclhaqa3cnf"; depends=[dplyr lme4 matrixsampling rlang tidyr]; }; 6641 6652 brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; 6642 6653 broman = derive2 { name="broman"; version="0.76"; sha256="1yjalfrfy1hvrcs3ky452mdg2ss8ikascj9yngp5fnfrrljcg9wg"; depends=[ggplot2]; }; 6643 - broom = derive2 { name="broom"; version="0.7.9"; sha256="1z65qyhkhkyalxhrvpsa7n8pickj9fjs8r4gzdvjp2rpggwramhx"; depends=[backports dplyr ellipsis generics glue purrr rlang stringr tibble tidyr]; }; 6654 + broom = derive2 { name="broom"; version="0.7.10"; sha256="0ks64xwkaqh5cinq8j56d89rn9kipm7cdipsgqmz9xxy7ajxb7qj"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; 6644 6655 broom_helpers = derive2 { name="broom.helpers"; version="1.4.0"; sha256="0x9z9v4d4dyd1mip86z084b9mizvzwbc4swp676mf2r6g465qskz"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; 6645 6656 broom_mixed = derive2 { name="broom.mixed"; version="0.2.7"; sha256="1fh1vxi8n5y30mayk4aa1yis4c064fz5xyrg8m0rl8xgaxakhagz"; depends=[broom coda dplyr nlme purrr stringr tibble tidyr]; }; 6646 - broomExtra = derive2 { name="broomExtra"; version="4.2.3"; sha256="187qnfs6lz0ff9xr7zxfj2laac35jvq105c6cr9fjl82vw2i8np1"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang tibble]; }; 6657 + broomExtra = derive2 { name="broomExtra"; version="4.3.0"; sha256="1f2xsq0r0m991y3p6639v16kjwm3im8yys7brzvgmsv04rg29rhq"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; }; 6647 6658 brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; 6648 6659 brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; 6649 6660 brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; ··· 6747 6758 campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; 6748 6759 camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; 6749 6760 camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; 6750 - cancensus = derive2 { name="cancensus"; version="0.4.5"; sha256="0bdngqwcf2x1dha3khafz7qyvbzxbhzzgpv44bybj6cd3jmg65lh"; depends=[digest dplyr httr jsonlite rlang]; }; 6761 + cancensus = derive2 { name="cancensus"; version="0.4.8"; sha256="0j4q00av0wssd0nwhgkdsyrcvicc4lial66ibfh5pyzih5i0dhpg"; depends=[digest dplyr httr jsonlite rlang]; }; 6751 6762 cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; 6752 6763 cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; 6753 6764 candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; ··· 6799 6810 casen = derive2 { name="casen"; version="0.1.4"; sha256="19f52vqrzqd8mmnaf39jmsm5mhydv74gpnb4rxr3n9w07ppb77c9"; depends=[dplyr glue haven janitor labelled magrittr purrr rlang srvyr survey tibble tidyr]; }; 6800 6811 casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; 6801 6812 cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; 6802 - castor = derive2 { name="castor"; version="1.6.9"; sha256="01wk8qg938z8kffmdhwkjglv6i41s9z0s5248q4983m24qsx1hvl"; depends=[Matrix naturalsort nloptr Rcpp RSpectra]; }; 6813 + castor = derive2 { name="castor"; version="1.7.0"; sha256="1l5kds6g0dbnwlyjlpmy9jzdm6x5xm4qmagfy505i0g7l8065wfl"; depends=[Matrix naturalsort nloptr Rcpp RSpectra]; }; 6803 6814 cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; 6804 6815 cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; }; 6805 6816 cat2cat = derive2 { name="cat2cat"; version="0.2.1"; sha256="0hjx14g97dsdbk2fzficbinl04n5gs2ccr2c813q6xda28al5bam"; depends=[assertthat caret data_table dplyr MASS progress randomForest rlang tidyr]; }; ··· 6829 6840 causact = derive2 { name="causact"; version="0.4.0"; sha256="1mghawijsr0rpyy9pzvad11bf4qgfva7rb2pdkidm675a123sgc7"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph magrittr purrr rlang rstudioapi stringr tidyr]; }; 6830 6841 causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; 6831 6842 causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; }; 6843 + causalPAF = derive2 { name="causalPAF"; version="1.2.4"; sha256="1ild77iiibzqbyxk3j20dydwmbrjf66r7qhd2ip2b3x9qbqq5wmh"; depends=[checkmate dagitty dplyr forestplot ggdag ggplot2 gridExtra magrittr MASS reshape2 rlist]; }; 6832 6844 causaldata = derive2 { name="causaldata"; version="0.1.1"; sha256="0d9c6lc053xxw3jpjwcy2cmkckhwfg5q67nf620mr5n4p173yxw0"; depends=[tibble]; }; 6833 6845 causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; 6834 6846 causaleffect = derive2 { name="causaleffect"; version="1.3.13"; sha256="1b238cv24vf91wwgfzb4wdrxx2dywhhsd1hlr7ps0mj4dv8li2xk"; depends=[igraph]; }; ··· 6856 6868 ccdf = derive2 { name="ccdf"; version="1.1.4"; sha256="1kab0qa731w5hhnpdqhf5jbyyq66xjx1xyxnkzwc0qy75cgyc03i"; depends=[CompQuadForm cowplot doParallel foreach ggplot2 matrixStats pbapply randomForest RcppNumerical rpart statmod survey viridisLite]; }; 6857 6869 ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; 6858 6870 cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; 6859 - cchsflow = derive2 { name="cchsflow"; version="1.8.2"; sha256="16vdjg68srix5g62x1chgjdr8pp8ypvn3kd64n6jnfyhxhia3jw6"; depends=[dplyr haven magrittr sjlabelled stringr]; }; 6871 + cchsflow = derive2 { name="cchsflow"; version="2.0.0"; sha256="1r8m072f6idmmirwgr71llcka6f254jzhcs53yx6fxzncp5l2g6n"; depends=[dplyr haven magrittr sjlabelled stringr]; }; 6860 6872 ccid = derive2 { name="ccid"; version="1.0.0"; sha256="1wzz8bydcy9x7rnrvvircd8lkrgx0p7x2q5hihxslz3siy1jjgaj"; depends=[gdata GeneNet hdbinseg IDetect]; }; 6861 6873 cclust = derive2 { name="cclust"; version="0.6-22"; sha256="1wyiwq16zyvc0vqbap1y4zfkvlgzwzjrx4vmrjhzlqxci8jryjbs"; depends=[]; }; 6862 6874 ccmEstimator = derive2 { name="ccmEstimator"; version="1.0.0"; sha256="1z53i7d2x1g93zskcyj93hxjyrvc9sjqmq887zaflwf22ikxvm6p"; depends=[]; }; ··· 6919 6931 cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; 6920 6932 ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; 6921 6933 cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; 6934 + cfbfastR = derive2 { name="cfbfastR"; version="1.6.4"; sha256="0harc4b3qxdb2gy01p6si7na8lrqjidw6ysndj12snyhdrx2id1m"; depends=[cli dplyr furrr future glue httr janitor jsonlite magrittr mgcv nnet progressr purrr rlang stringi stringr tibble tidyr xgboost]; }; 6922 6935 cfda = derive2 { name="cfda"; version="0.9.9"; sha256="07k531vp2chsrkw5d0iws3jg23yz0gni0bjn03kr6irw89r4py9p"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; 6923 6936 cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; 6924 6937 cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; ··· 6940 6953 cgwtools = derive2 { name="cgwtools"; version="3.3"; sha256="1dl9ghwfzjrl5pd6izy4c5qyfq2s8ywnqh97y1bhwmcw2qwb4ci6"; depends=[gmp]; }; 6941 6954 ch = derive2 { name="ch"; version="0.1.0.2"; sha256="1ryh2xr1ix4qznq1svi4gdr4qy6v6rg597z2zl6zw32s2xq6ssx6"; depends=[clipr crayon ggplot2 magrittr MASS polynom pracma Ryacas]; }; 6942 6955 chameleon = derive2 { name="chameleon"; version="0.2-0"; sha256="1q631l40gdknbv7dzvzgfdi0mx7rs4hlfkimhvf6li6ajmmh3sa5"; depends=[clue ggplot2 umap]; }; 6943 - chandwich = derive2 { name="chandwich"; version="1.1.4"; sha256="0znk0nmh77j6a6wwxqlv8h155pihc9g1v3w7fgsrwna0pkjqmhn4"; depends=[numDeriv]; }; 6956 + chandwich = derive2 { name="chandwich"; version="1.1.5"; sha256="1i3gg3ib4j33i5f3a6x9k2g8d5ccbdmv2pb2bdhiwwsjy8bfmsvq"; depends=[numDeriv]; }; 6944 6957 changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; }; 6945 6958 changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; 6946 6959 changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; ··· 7070 7083 clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; 7071 7084 clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; 7072 7085 clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; 7073 - cli = derive2 { name="cli"; version="3.0.1"; sha256="1zdld2cr83k4v7yrwa2csvcafwslwr610vk70mv1a3knrnv2b6nq"; depends=[glue]; }; 7086 + cli = derive2 { name="cli"; version="3.1.0"; sha256="04ff3bgsahi736s8l6a26zlwwil8jw4shx7bb56ah1pp1f1n22n7"; depends=[glue]; }; 7074 7087 cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; 7075 7088 clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; 7076 7089 clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; ··· 7099 7112 clipp = derive2 { name="clipp"; version="1.1.0"; sha256="1mh3rhkjm13yp1890d7zy2qn50nv177z74kr4pgnp5i7vlr8zqr6"; depends=[]; }; 7100 7113 clipr = derive2 { name="clipr"; version="0.7.1"; sha256="1ywa4kipwc2d7na6iiz3wzdah99h6aynnh74yxl3nzl40xxlgbgz"; depends=[]; }; 7101 7114 clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; 7102 - clock = derive2 { name="clock"; version="0.4.1"; sha256="18bjcsb4kdxk8gmx2f6s66azrhspa0sv71sqim4998mw5xzr2c34"; depends=[cpp11 ellipsis rlang tzdb vctrs]; }; 7115 + clock = derive2 { name="clock"; version="0.5.0"; sha256="0d2mmsm1aainmk3896fb8jidyg76vczxjamj4jd8zb47frn1qz95"; depends=[cpp11 ellipsis rlang tzdb vctrs]; }; 7103 7116 clockify = derive2 { name="clockify"; version="0.0.9"; sha256="1m8jpafraycb85g7z4nna3isjyd5vfacbrxwpgn9745rbkg5iwly"; depends=[anytime dplyr httr janitor logger lubridate purrr tibble tidyr]; }; 7104 7117 clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; 7105 7118 clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; ··· 7109 7122 cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; 7110 7123 cloudos = derive2 { name="cloudos"; version="0.2.0"; sha256="0n0ldg81k6i0wqnzzimkr7pyi2q705g9hia4ckf1cp2sskgrfvj0"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble]; }; 7111 7124 cloudstoR = derive2 { name="cloudstoR"; version="0.1.0"; sha256="0bcdm3qp1bcgb7wksvjisd7m629cqbdvf8779gmlqi3w5daw4lpq"; depends=[cli curl getPass httr keyring rio XML]; }; 7112 - clpAPI = derive2 { name="clpAPI"; version="1.3.0"; sha256="1ivrvipnvnqf1mnvvqnv2jgf69i0h84f46n8x41bx89lag0161bv"; depends=[]; }; 7125 + clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; }; 7113 7126 clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; 7114 7127 clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; 7115 7128 clubSandwich = derive2 { name="clubSandwich"; version="0.5.3"; sha256="0jazgka18bb5n58d5sn94q7rc9sac82qrpl2i5b4rkx9q2pb39cn"; depends=[sandwich]; }; ··· 7161 7174 cmprsk = derive2 { name="cmprsk"; version="2.2-10"; sha256="1xnx2zanw548prxsw2zw5cddkkg6kj97jgyzw67achq5mnsvfbg8"; depends=[survival]; }; 7162 7175 cmprskQR = derive2 { name="cmprskQR"; version="0.9.2"; sha256="1b3di5fsgglriv00fxydpc4p8lh0xcgi6jc04awq2vmp6s8kvjmw"; depends=[quantreg survival]; }; 7163 7176 cmprskcoxmsm = derive2 { name="cmprskcoxmsm"; version="0.2.1"; sha256="1q17nzvqv0c8p2fs34fqszllp6g7kdbsmw4frlxpbjr3gwgd8rlk"; depends=[ggplot2 sandwich survival twang]; }; 7177 + cmpsR = derive2 { name="cmpsR"; version="0.1.0"; sha256="0gxngq2awpignkdwi5cn6gxwk0q2fi3zy55jg5mlkihz2sq9iyyg"; depends=[assertthat dplyr ggplot2 rlang]; }; 7164 7178 cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; 7165 7179 cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; 7166 7180 cmsaf = derive2 { name="cmsaf"; version="3.3.0"; sha256="0k4bdimykhc224m81mvr4ld5bffixgxdwg3qk5gdx58b01a2f0xg"; depends=[cmsafops cmsafvis colorspace colourpicker data_table fields FNN mapproj maps maptools ncdf4 R_utils raster rworldxtra SearchTrees shiny shinyFiles shinyjs shinythemes sp xml2]; }; ··· 7225 7239 collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; 7226 7240 collapse = derive2 { name="collapse"; version="1.6.5"; sha256="0ijsp4azblyvgryx94ymfzcc6d5f3g794z8yv3amxsxmc8x2l8qy"; depends=[Rcpp]; }; 7227 7241 collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; 7242 + collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; 7228 7243 collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; 7229 7244 collections = derive2 { name="collections"; version="0.3.5"; sha256="053ig88pva78wxxwya3v7cz853k563dkpgxrf2xvd0l0d9fanxmz"; depends=[]; }; 7230 7245 collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; ··· 7301 7316 composits = derive2 { name="composits"; version="0.1.0"; sha256="1j2bbl0p7dhlf18n1164qdbch2qa5nzk66qh4xlrrhr36zip88y4"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; }; 7302 7317 compound_Cox = derive2 { name="compound.Cox"; version="3.20"; sha256="18fgc58jqrjls1rkzrpy338m3yyxaqkv7dfv31a2sf551ynajcfy"; depends=[numDeriv survival]; }; 7303 7318 comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; 7304 - compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; }; 7305 7319 compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; 7306 7320 comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; 7307 7321 comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; 7308 7322 con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; 7309 7323 con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; 7310 7324 conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; 7325 + conText = derive2 { name="conText"; version="1.0.0"; sha256="0xf2vy3g7myx3b85vcs7h9plqyy8yhxa1cnldi1jn3x4cmpq5f04"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec]; }; 7311 7326 concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; 7312 7327 concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; 7313 7328 concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; ··· 7353 7368 conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; 7354 7369 conos = derive2 { name="conos"; version="1.4.3"; sha256="15gbaa2lq256fgd4wgvf6hkv0k9w45764kya55hcr1z6wqx53i7z"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; 7355 7370 conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; 7356 - conquer = derive2 { name="conquer"; version="1.0.2"; sha256="1zvlsrbmrij011mcdi3qngs1al2lhrdiyknxnk0w1zhzrra62bsl"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; 7371 + conquer = derive2 { name="conquer"; version="1.2.0"; sha256="1y87ky1fzkc9bgw31sk2zzxipiyqwca6my7phwdv60lfclii4i8h"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; 7357 7372 conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; 7358 7373 conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; 7359 7374 consort = derive2 { name="consort"; version="0.2.0"; sha256="12r01p3kszybp8snb6bqhp59w2rzk8wc1jrd2rd1fgvrd134s7ph"; depends=[Gmisc]; }; ··· 7442 7457 corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; 7443 7458 corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; 7444 7459 cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; }; 7445 - corto = derive2 { name="corto"; version="1.1.9"; sha256="122pvm2q32snicjha5q4is4wm5id63zhmzb064s3dbnml7f51ql2"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; 7460 + corto = derive2 { name="corto"; version="1.1.10"; sha256="1vddp42klrji8qfccdrfwppk657aa46crs65mvbpcj9wss7zj2ng"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; 7446 7461 corx = derive2 { name="corx"; version="1.0.6.1"; sha256="179fxjagbq33549zyk234kz9ajbifl7qpmdy0lrw9vzjc8aqbycf"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue magrittr moments ppcor psych tidyselect]; }; 7447 7462 cosa = derive2 { name="cosa"; version="2.0.0"; sha256="1ra1m75ay829xlhjax82px4ffflnfgh2mrmzzj4i8ml545d9hmgr"; depends=[msm nloptr]; }; 7448 7463 cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; ··· 7517 7532 cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; 7518 7533 cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; 7519 7534 cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; 7535 + cpsR = derive2 { name="cpsR"; version="0.4.4"; sha256="1krwmqlqqyn1a2dzy7lam1w4vzhqka3jjibysymy829clbj0vznn"; depends=[httr jsonlite tibble]; }; 7520 7536 cpss = derive2 { name="cpss"; version="0.0.2"; sha256="1a6nphzf9y1p1ic51f0zll6g3j3flr7szrvzac1w4a023fj7301r"; depends=[dplyr ggplot2 gridExtra magrittr mvtnorm Rcpp RcppArmadillo Rfast rlang tibble tidyr]; }; 7521 7537 cpsurvsim = derive2 { name="cpsurvsim"; version="1.2.0"; sha256="1fn88cqryji1syzhnx726m5svxnrlyynxk4jhp5ny8g3knai6nnk"; depends=[Hmisc knitr plyr]; }; 7522 7538 cpsvote = derive2 { name="cpsvote"; version="0.1.0"; sha256="0nmg79isqwvxyg7zkfbshndfjb2fnc2ffg32hxvjvsy714lpljf6"; depends=[dplyr forcats magrittr readr rlang stringr]; }; ··· 7536 7552 crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; 7537 7553 crassmat = derive2 { name="crassmat"; version="0.0.6"; sha256="1c4ii34vh8y5b3z2maby4cafb3n2m9bnxv3762cy0z12mbg7zk1s"; depends=[svMisc]; }; 7538 7554 crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; 7539 - crayon = derive2 { name="crayon"; version="1.4.1"; sha256="1ir963s6zk9l32fw257y54p7898cd7z7yazkn9h6j2cdfhpf9dh8"; depends=[]; }; 7555 + crayon = derive2 { name="crayon"; version="1.4.2"; sha256="0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f"; depends=[]; }; 7540 7556 crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; 7541 7557 crctStepdown = derive2 { name="crctStepdown"; version="0.1"; sha256="07y4drz76nqk2lvk2600w3s20qx71xddlxqc8zrw3bh02pgdnpy7"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; 7542 7558 credentials = derive2 { name="credentials"; version="1.3.1"; sha256="0q3s1bibwvw1p541k8a5cjx4dj1iabl4crg61fgjxkniclxag5c7"; depends=[askpass curl jsonlite openssl sys]; }; ··· 7737 7753 dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; 7738 7754 damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; 7739 7755 dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; 7740 - dang = derive2 { name="dang"; version="0.0.14"; sha256="041qb5babsx1wk1k0sfssy9rkf03ij6g9f8vbx7wn3a82l26f02h"; depends=[tidyCpp]; }; 7756 + dang = derive2 { name="dang"; version="0.0.15"; sha256="0zy72rlviisjb3syvj2fq9zliwk02m33kjd7h9q7n3xq3876bi4w"; depends=[tidyCpp]; }; 7741 7757 dani = derive2 { name="dani"; version="0.1-1"; sha256="0ff0hcb5r8k6m6kv1zhjrpvl7gr1al3q0zlk4yjj89qd2j5byqp8"; depends=[Epi]; }; 7742 7758 dann = derive2 { name="dann"; version="0.2.2"; sha256="115mc2mrmriyp24i8xgr58bjfgz6rzccl7s4akzp8rq5vhca707y"; depends=[fpc ggplot2 MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; 7743 7759 dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; ··· 7761 7777 dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; 7762 7778 dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; 7763 7779 dataPreparation = derive2 { name="dataPreparation"; version="1.0.2"; sha256="01ns6qrqr3pm9qfzc2lky0nqcnyn7adg3pdjf461kqhb2pvzcimv"; depends=[data_table lubridate Matrix progress stringr]; }; 7764 - dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; 7765 7780 dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; 7766 7781 datacleanr = derive2 { name="datacleanr"; version="1.0.1"; sha256="1kvlnvh2s8csng9q1l5bgc6aw7ax88dfl0iwbi4r8gc76swcbywm"; depends=[clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; 7767 7782 datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; ··· 7794 7809 datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; 7795 7810 dataverse = derive2 { name="dataverse"; version="0.3.9"; sha256="10kdqav21j5f18jgf754d1wvlx1j61xs4kj31jwj48nkwr38719x"; depends=[checkmate httr jsonlite readr xml2]; }; 7796 7811 datawizard = derive2 { name="datawizard"; version="0.2.1"; sha256="062phzfcvn79npn4s58gz1m5ignyvr4q2zlqnyxla4p7l760djl9"; depends=[insight]; }; 7797 - datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.1.0"; sha256="06b294r5p1brj58imlf8hr0c004hfnb6l1sq7ssl2l2qr1f3r3cw"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; 7812 + datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; 7798 7813 date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; 7799 7814 daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; 7800 7815 datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; ··· 7816 7831 dbarts = derive2 { name="dbarts"; version="0.9-20"; sha256="0ap9lmkx2z4fgc5b9kws6pgvshkr9ngr1z1qgmivf698h6ayfx8x"; depends=[]; }; 7817 7832 dbcsp = derive2 { name="dbcsp"; version="0.0.1.0"; sha256="08y111ivy5f8jgmlsmf52vxxc64j2z4lijvdx1bx6a90vcvlqc51"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist]; }; 7818 7833 dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; 7819 - dbflobr = derive2 { name="dbflobr"; version="0.1.0"; sha256="0sh14lf6qnj3z4lwkw27vv1s57jf5lfmw9lmz0hvd6nbfgmcr9rg"; depends=[chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; 7834 + dbflobr = derive2 { name="dbflobr"; version="0.2.1"; sha256="0q736fpz18kq18jr8ga1jxh3vggmd7xws0sda83h95gkfx96pf8p"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; 7820 7835 dbglm = derive2 { name="dbglm"; version="1.0.0"; sha256="1ljfi31n8d1mh1lr4q00klp74fz0c0jy9wdy2svhlzaszbrg76ky"; depends=[DBI dbplyr dplyr knitr purrr rlang stringr tibble tidypredict tidyr tidyverse vctrs]; }; 7821 7836 dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; 7822 7837 dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; ··· 7881 7896 decorators = derive2 { name="decorators"; version="0.1.0"; sha256="0whcwi68h374pm85gzwaw7kcjhgka1il12g90vrf87lafhbl2x4i"; depends=[purrr]; }; 7882 7897 deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; 7883 7898 deductive = derive2 { name="deductive"; version="1.0.0"; sha256="11cn6wncd438g5ar5pjw6rw50060mksjf0xjcds92s97dz5m28a4"; depends=[lintools stringdist validate]; }; 7884 - dedupewider = derive2 { name="dedupewider"; version="0.0.2"; sha256="1vqp3pab318idq2dnqp68fwv7bk36aablvjsnb2y97azxan6kfbl"; depends=[data_table]; }; 7899 + dedupewider = derive2 { name="dedupewider"; version="0.1.0"; sha256="18s8m0nzmx8ai4gcv5rv3rvmngw1q0pxj013v433xj76z2drqdaz"; depends=[data_table]; }; 7885 7900 deep = derive2 { name="deep"; version="0.1.0"; sha256="1764cnsax8jwp2pb6rnmlb0f5m99jss84yi9rp017hdm20izvzrq"; depends=[]; }; 7886 7901 deepMOU = derive2 { name="deepMOU"; version="0.1.1"; sha256="1r05wg01nighmhs2r8z91w091fz2r1ryb1j0mi96knqqdjgcbh4i"; depends=[dplyr entropy extraDistr ggplot2 MASS Rfast skmeans]; }; 7887 7902 deepNN = derive2 { name="deepNN"; version="1.1"; sha256="0iqvr8cl7ks5qvwsp1sx10r4jpbchf4mlsq0s3icr2cs3x3ryxvi"; depends=[Matrix]; }; ··· 7903 7918 degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; 7904 7919 dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; 7905 7920 delayed = derive2 { name="delayed"; version="0.3.0"; sha256="04f4k683jzb763sb9knb81lw8df56y1378g4i3c1x8m83bvj1mhs"; depends=[assertthat BBmisc data_table future igraph progress R6 rlang rstackdeque uuid visNetwork]; }; 7906 - deldir = derive2 { name="deldir"; version="1.0-5"; sha256="0n0lphhpx9w41zgmmijvghlf1n9ii3kd4siqp36l8iw1afnjvyd0"; depends=[]; }; 7921 + deldir = derive2 { name="deldir"; version="1.0-6"; sha256="1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd"; depends=[]; }; 7907 7922 delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; 7908 7923 deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; 7909 7924 deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; ··· 7916 7931 demography = derive2 { name="demography"; version="1.22"; sha256="1m15capbfknr4rqxmfgj1vb7rmgambk6r9ic37149525sg7wn3j6"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; 7917 7932 demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; 7918 7933 dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; 7919 - dendextend = derive2 { name="dendextend"; version="1.15.1"; sha256="0zf4w4rc2jj30i3x0m0gnkwidfmn3cvz1wirp20amq4v3n9420md"; depends=[ggplot2 magrittr viridis]; }; 7920 - dendroTools = derive2 { name="dendroTools"; version="1.1.4"; sha256="1491vvdha6vm8992ah67vp1pgsz4khjzwnnddjp8pblacnswja59"; depends=[boot brnn Cubist dplyr ggplot2 gridExtra knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; 7934 + dendextend = derive2 { name="dendextend"; version="1.15.2"; sha256="06wjs8451hmnimzgngpzbai3yrgy33133vzzapa8jib9crdqi8sb"; depends=[ggplot2 magrittr viridis]; }; 7935 + dendroTools = derive2 { name="dendroTools"; version="1.2.0"; sha256="1sm35xicaxcpfg6r34539kc2kzj8ya0aqwa7i3iqdv81611nkqsp"; depends=[boot brnn Cubist dplyr ggplot2 gridExtra knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; 7921 7936 dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; 7922 7937 dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; 7923 7938 dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; ··· 7959 7974 designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; 7960 7975 desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; 7961 7976 desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; 7962 - desplot = derive2 { name="desplot"; version="1.8"; sha256="0i3vwg0v3snan6rvgc2v3i01fdi3xbw3k407zrxdai27i0mjanx8"; depends=[ggplot2 lattice reshape2]; }; 7977 + desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; 7963 7978 details = derive2 { name="details"; version="0.2.1"; sha256="03fw3jbf1a34w9c205wwjkqnw6ic1gylsf36qw33mx4ba252s2hy"; depends=[clipr desc httr knitr magrittr png withr xml2]; }; 7964 7979 detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; 7965 7980 detectR = derive2 { name="detectR"; version="0.1.0"; sha256="1l93b8xx6xridwcvs15xgfm7w05p3r233rxpakpii3d71rnbs8cy"; depends=[doParallel foreach glasso lavaan LogConcDEAD signal]; }; ··· 7976 7991 devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; 7977 7992 devtoolbox = derive2 { name="devtoolbox"; version="0.1.0"; sha256="0ry0liw7a27nndhb5p7migx2ji2g3n1qpip1yr7mlikb7vxap2d6"; depends=[dplyr DT flexdashboard ggiraph ggplot2 gh htmltools httr jsonlite lubridate magrittr markdown purrr reshape2 rmarkdown stringr tidyr tidyselect]; }; 7978 7993 devtools = derive2 { name="devtools"; version="2.4.2"; sha256="01cg2ykg0av6z7bgl41njcxcii8vjj8ipch26xazp4yjai8abw3i"; depends=[callr cli desc ellipsis fs httr lifecycle memoise pkgbuild pkgload rcmdcheck remotes rlang roxygen2 rstudioapi rversions sessioninfo testthat usethis withr]; }; 7979 - dexter = derive2 { name="dexter"; version="1.1.3"; sha256="19cvgg14zv3swr8jrvpdsbsrx3vxly4zcg5wmb07r1rvqlh2lgcg"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; 7994 + dexter = derive2 { name="dexter"; version="1.1.4"; sha256="0clyhpnzm8an5hcs4lf34ydqnvj0gpsikfwhd3pmh4sg9rkhiwl5"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; 7980 7995 dexterMST = derive2 { name="dexterMST"; version="0.9.2"; sha256="118y8a33l85klj6w5vj5mkr64xvmbf16n6ff3nsk7nx7v1f26x6d"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; 7981 7996 dextergui = derive2 { name="dextergui"; version="0.2.3"; sha256="1vq2flgry3dl90laj6dq3wsd6b90h3s3kbaqj99f67majagqqdcl"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; 7982 7997 dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; ··· 8090 8105 discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; 8091 8106 discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; 8092 8107 discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; 8093 - discretefit = derive2 { name="discretefit"; version="0.0.0"; sha256="0g9a83hiqkpicdp1p59470xgp6nqj2k82q9zvbaiiz9jysz511df"; depends=[Rcpp]; }; 8108 + discretefit = derive2 { name="discretefit"; version="0.1.1"; sha256="00na797gvcv6mk78kcmd82xgcz9qmv489hm3i9lg6gr593iw1xsw"; depends=[Rcpp]; }; 8094 8109 discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; 8095 8110 discrim = derive2 { name="discrim"; version="0.1.3"; sha256="1m54qq2a9k5xphmz7a1701vxvfzyb0g477mb74x0s152gj49xcm0"; depends=[dials parsnip purrr rlang tibble withr]; }; 8096 8111 disdat = derive2 { name="disdat"; version="1.0-0"; sha256="1q8v40m0vjni3kx0f04qb99adxcx783p9lfixvvq6viz13v1ygcw"; depends=[]; }; ··· 8230 8245 doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; 8231 8246 double_truncation = derive2 { name="double.truncation"; version="1.7"; sha256="0hrb1qli7i4jhc705rb02zbq2nyk0i406bb8gpy4jrzygjjbq3g0"; depends=[]; }; 8232 8247 doubt = derive2 { name="doubt"; version="0.1.0"; sha256="16avp0f7ks2zd4ckakvfm57zng2jk0fg3fz6vbm05lzhqymh6y30"; depends=[unglue]; }; 8233 - downlit = derive2 { name="downlit"; version="0.2.1"; sha256="0z4fz7c9kyd9v72wl3iqs2wxspi975d6b0rgjr9lvg8a18maa9z6"; depends=[brio digest evaluate fansi rlang vctrs yaml]; }; 8248 + downlit = derive2 { name="downlit"; version="0.4.0"; sha256="10zvrqdpwavdy97h3q26bqh3k63z61fmc04w9vwsnvmnv8hnh3vl"; depends=[brio desc digest evaluate fansi memoise rlang vctrs yaml]; }; 8234 8249 downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; 8235 8250 downloadthis = derive2 { name="downloadthis"; version="0.2.1"; sha256="12df3cxg1x84f3sibllykd5wqs11mr4nlyv8hj8bh9d6wjvwj2li"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; 8236 8251 downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; ··· 8272 8287 drifter = derive2 { name="drifter"; version="0.2.1"; sha256="1xsp8cm02wd8zink0jqrdaii7s2dh0rw96rs6k8zr2g0341wmfba"; depends=[DALEX dplyr ingredients tidyr]; }; 8273 8288 drimmR = derive2 { name="drimmR"; version="1.0.1"; sha256="0fi0ifb9y2jfb347684fd9pjfgn4b693yb5sqbcfpf2z7jvknsi1"; depends=[doParallel dplyr foreach future ggplot2 Rdpack reshape2 seqinr tidyverse]; }; 8274 8289 driveR = derive2 { name="driveR"; version="0.2.1"; sha256="1zc14j7aarxbw11p5gardqkwrab71b8wfrpd1q2g6r9dg98w146i"; depends=[caret GenomeInfoDb GenomicFeatures GenomicRanges org_Hs_eg_db randomForest rlang S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; 8275 - drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; 8290 + drmdel = derive2 { name="drmdel"; version="1.3.2"; sha256="1772fxm3qs01h14qklp2rawcdm0vmjmb2mi62v1zl1hbxisnfq4s"; depends=[]; }; 8276 8291 droll = derive2 { name="droll"; version="0.1.0"; sha256="0gd1vnvkjdsw7gz4czi4g9zq5080awfr4dy2srgksh4ah4ki4vm3"; depends=[Ryacas]; }; 8277 8292 dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; 8278 8293 droptest = derive2 { name="droptest"; version="0.1.3"; sha256="1wlfhj6c4pb5mcybyd2bcn55y3azk7dv7d7il97qwbhl8kf59csl"; depends=[data_table]; }; 8279 8294 drord = derive2 { name="drord"; version="1.0.1"; sha256="0xi85s6y78d54qv3cw7q72dz5kcs8cc8nyjyaxr5h6pfpzi2l8i9"; depends=[ggplot2 MASS ordinal VGAM]; }; 8280 8295 drought = derive2 { name="drought"; version="1.0"; sha256="1rj3aycvkb0f85p12l356rlhid4zfzqkhks20x2hhwvpk8nhri8h"; depends=[copula]; }; 8281 - drpop = derive2 { name="drpop"; version="0.0.1"; sha256="0l7w8rn6ljq8n9n4vd2i0pn0wr3g88xzzpm02rmwsq2f22ngxbci"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; 8296 + drpop = derive2 { name="drpop"; version="0.0.2"; sha256="01lr3xchqnd2g75k8w8p4rzbqnd5rrcjhfcr3bz7nja5j4vrq307"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; 8282 8297 drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; }; 8283 8298 drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; 8284 8299 ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; ··· 8396 8411 easyalluvial = derive2 { name="easyalluvial"; version="0.3.0"; sha256="02l0jy3bwp3qrz6g5iknl2fsfqi6a6wzn8q18k8518xczlsn1gbd"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; 8397 8412 easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; 8398 8413 easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; 8399 - easylabel = derive2 { name="easylabel"; version="0.1.0"; sha256="0am3xi6p0bsrva2hzndnfyw686dcrzj53m8g8a2zvkqqixgq3iv9"; depends=[DT plotly RColorBrewer shiny]; }; 8414 + easylabel = derive2 { name="easylabel"; version="0.2.2"; sha256="0dqs0qqha6diz1nn8zkd27yjjirzgs4bdpd0h5cgq5d7jm465ixv"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; 8400 8415 easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; 8401 8416 easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; 8402 8417 easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; ··· 8406 8421 eatATA = derive2 { name="eatATA"; version="1.0.0"; sha256="1n966jrcmifi1gbzcnyavsnzmcgsp138x32mcl8pj6w3by97i781"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; 8407 8422 eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; 8408 8423 eatGADS = derive2 { name="eatGADS"; version="0.18.1"; sha256="09hjn1w2mng2ypmlm8zw9dl4q430c75i5nil4x86bm9ap8zw511n"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; 8409 - eatRep = derive2 { name="eatRep"; version="0.13.6"; sha256="0k3r46bzxhb5a423d4vp2c4wy4gmh2p80qnm5h2hs928l5q1b7hn"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; 8424 + eatRep = derive2 { name="eatRep"; version="0.13.7"; sha256="1667cq00gvcbvsfmplv97bmgkfyq9zi08d5yzpa0l7x7d5xgxmm2"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; 8410 8425 eatTools = derive2 { name="eatTools"; version="0.7.0"; sha256="1rhf6c6j7qwz5y20dip07h4044581pf9kaq71rl8sswbcsb7nny5"; depends=[data_table]; }; 8411 8426 ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; 8412 8427 ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; ··· 8426 8441 ecespa = derive2 { name="ecespa"; version="1.1-13"; sha256="0a8s923xzw6wkl9240mqsr7lpvjmi20kqn2zsbax3rrrdf4gqfkx"; depends=[spatstat spatstat_core spatstat_geom]; }; 8427 8442 ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; 8428 8443 echarts4r = derive2 { name="echarts4r"; version="0.4.2"; sha256="1mv080bcprskzhc778ccd5yvrp48fawdjah0hwj795cz72603jd3"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; 8429 - echarty = derive2 { name="echarty"; version="0.3.1"; sha256="1fqa77g5mvxwv24gd4fvcy5d3m5i5dcfs9qlwgky2hzsp9y8wh75"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr]; }; 8444 + echarty = derive2 { name="echarty"; version="1.4.0"; sha256="09j7kkkfwjl817k9wbl872ix0cs2973lvmd4az4fns565nhb4wdy"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr]; }; 8430 8445 echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; 8431 8446 echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; 8432 8447 echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; ··· 8454 8469 ecospat = derive2 { name="ecospat"; version="3.2"; sha256="1w937f56q8lgjyqc575vxy3vfhd53ri9yiw300qqx6mnj66ijsl8"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators ks maps maptools matrixStats nabor poibin PresenceAbsence randomForest raster rms snowfall sp vegan]; }; 8455 8470 ecostats = derive2 { name="ecostats"; version="0.1.4"; sha256="0xkhkcc6psgvvwhys9azhxisnqw0azd7brp0rg60d725jqvwhbyp"; depends=[GET mgcv mvtnorm]; }; 8456 8471 ecostatscale = derive2 { name="ecostatscale"; version="1.0"; sha256="14i5wg5qxqn3qzycgqda6blb0imkckq23gl3c3whfa72a3a8y30q"; depends=[deSolve mvtnorm]; }; 8457 - ecotox = derive2 { name="ecotox"; version="1.4.2"; sha256="0i4wjarg8gj4hfr0d4fqk74ymhkzrq3vkklpv5v1511ci19hpv16"; depends=[tibble]; }; 8472 + ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; 8458 8473 ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; 8459 8474 ecotraj = derive2 { name="ecotraj"; version="0.0.1"; sha256="0570j338107bxx004wwx76j1x981nh1apgp9x33r4ddz4f589aag"; depends=[circular Kendall MASS Rcpp]; }; 8460 8475 ecoval = derive2 { name="ecoval"; version="1.2.7"; sha256="1hnryk9y3074iy7hv40jr00lpg2w99l7halwv6bj14v6ygddj2k7"; depends=[jpeg rivernet utility]; }; ··· 8481 8496 edgarWebR = derive2 { name="edgarWebR"; version="1.1.0"; sha256="1v9rdj2qdcvzz7g78pa9j6l8d6zjz1q06h09c4547r67bzfz1nxy"; depends=[httr jsonlite xml2]; }; 8482 8497 edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; 8483 8498 edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; 8484 - edgebundle = derive2 { name="edgebundle"; version="0.2.1"; sha256="167b2qm6bhxsx94njrk256yvmrf3frcmbydcw9fzrhms7yz1nrmz"; depends=[igraph interp Rcpp reticulate]; }; 8499 + edgebundle = derive2 { name="edgebundle"; version="0.3.0"; sha256="0hwj4qwb3x5y6svzf9wi9bb5q73x3qyknq0v659i9x99pnszqsld"; depends=[igraph interp Rcpp reticulate]; }; 8485 8500 edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; 8486 8501 edgedata = derive2 { name="edgedata"; version="0.2.0"; sha256="11sc7x0m00yhn2c4601dpjv3brmf57i8barsl3p7bawcvka8z5lr"; depends=[]; }; 8487 8502 edina = derive2 { name="edina"; version="0.1.1"; sha256="1lpmidyxi54byrsnwwadkh5rr454635xrwa4v2wz8mqr2hngxis3"; depends=[ggplot2 jjb Rcpp RcppArmadillo reshape2 rgen]; }; ··· 8539 8554 einet = derive2 { name="einet"; version="0.1.0"; sha256="02v4k6031q2bcjkhbypzkgdj1lyvqbsi1nb0y40zb26bk2381ycq"; depends=[assertthat entropy igraph magrittr shiny]; }; 8540 8555 einsum = derive2 { name="einsum"; version="0.1.0"; sha256="01930c38hkbqhn8d5g7jfhr0mrdi077rg0kkbp5kagxcqx6jrg7w"; depends=[glue mathjaxr Rcpp]; }; 8541 8556 eiopaR = derive2 { name="eiopaR"; version="0.1.1"; sha256="1f8fm6ia5invskc7a7hcjvf52afdkw38y1vx7jlpqxvawswmwpv2"; depends=[curl httr jsonlite]; }; 8542 - eirm = derive2 { name="eirm"; version="0.4"; sha256="0gnjrkivkpbbfj6c51706w3nmxrzz8l0pphdb0ig2a32pr8m3s2b"; depends=[ggeffects ggplot2 lme4 magrittr optimx readxl reshape2 shiny shinycssloaders shinydashboard]; }; 8557 + eirm = derive2 { name="eirm"; version="0.5"; sha256="0zs45n6xkyi9agrgv36bz2prdcplln66713xjr6sxyip52z9ksbk"; depends=[blme ggeffects ggplot2 lme4 magrittr optimx readxl reshape2 shiny shinycssloaders shinydashboard]; }; 8543 8558 eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; 8544 8559 eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; 8545 8560 eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; }; 8546 8561 elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; 8547 - elasdics = derive2 { name="elasdics"; version="0.1.2"; sha256="0w0b38v2haqn5a7qf1zdn7ypqgp8al7qzmaxmycl184v48w7bk5z"; depends=[numDeriv]; }; 8562 + elasdics = derive2 { name="elasdics"; version="0.1.3"; sha256="0xd71kgj41792h91fikvjmqbl831ribbxlvv1s216vpba74z8qqs"; depends=[numDeriv]; }; 8548 8563 elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; 8549 8564 elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; 8550 8565 elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; ··· 8569 8584 elliptic = derive2 { name="elliptic"; version="1.4-0"; sha256="1dhba0yfxjd5rlqsxp5a7s2hclfkla9wigsr39dlma67l6qjjmxn"; depends=[MASS]; }; 8570 8585 ellipticalsymmetry = derive2 { name="ellipticalsymmetry"; version="0.1.2"; sha256="035q6zjf0lnx704q5g51bhv1xp7y0yn31ph57zydk92gfpgn468l"; depends=[doParallel doRNG foreach ICSNP]; }; 8571 8586 elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.3"; sha256="1cv6si3vd91q42dfg4dbyn3qd8ah4pywsdpma84y9kdnn1mmvnxb"; depends=[KernelKnn Rcpp RcppArmadillo]; }; 8587 + elrm = derive2 { name="elrm"; version="1.2.5"; sha256="1kqwr0nfmnb729h01p14a24kd9scsw7j7qj133kpg0ppcfsnygld"; depends=[coda]; }; 8572 8588 elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; 8573 8589 eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; 8574 8590 emIRT = derive2 { name="emIRT"; version="0.0.11"; sha256="1h91q9vi9cv14bmkaakyynw2z9sx51w0c2kw2in0x91wx7scmd0p"; depends=[pscl Rcpp RcppArmadillo]; }; ··· 8652 8668 epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; }; 8653 8669 epiR = derive2 { name="epiR"; version="2.0.38"; sha256="0bb0c2fhjgr845lr5pgsac10faqa6zrq6sb0jhsm6qpaqsi1f1ja"; depends=[BiasedUrn lubridate pander survival]; }; 8654 8670 epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; 8655 - epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; 8671 + epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; 8656 8672 epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; 8673 + epidemia = derive2 { name="epidemia"; version="1.0.0"; sha256="1lfbibcpm58a05wrikwfzxkfqxw6yk41b1q07wpchxpz1lfv2v5y"; depends=[bayesplot BH dplyr ggplot2 hrbrthemes lme4 magrittr Matrix Rcpp RcppEigen Rdpack rlang rstan rstanarm rstantools scales StanHeaders tidyr zoo]; }; 8657 8674 epifitter = derive2 { name="epifitter"; version="0.3.0"; sha256="104hl3b3951psi023hv95486ygcv9ilmqkzw96yygym7rhkaww9m"; depends=[DescTools deSolve dplyr ggplot2 knitr magrittr minpack_lm tibble tidyr]; }; 8658 8675 epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; 8659 8676 epigraphdb = derive2 { name="epigraphdb"; version="0.2.2"; sha256="1kd46anhijcx4sw4ghzd417vwdl64375cbrlj0shcvv9gcc3h38n"; depends=[glue httr jsonlite magrittr purrr tibble]; }; ··· 8728 8745 esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; 8729 8746 escalation = derive2 { name="escalation"; version="0.1.4"; sha256="1iyjp20rzz3lrgn183jvjcf7vvmk66f3rgyv22s2ja4b98598ha4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; 8730 8747 eseis = derive2 { name="eseis"; version="0.5.0"; sha256="03pjcms3aj7sm2wrld64v1dw53bqn9pmsayndma03abjh66rblii"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp reticulate rgdal rmarkdown shiny signal sp XML]; }; 8748 + esemifar = derive2 { name="esemifar"; version="1.0.0"; sha256="0yy5ya6saw7njf06gad3bjh2wf56y0b9hid3bjxjmxb0w9pi660i"; depends=[fracdiff smoots]; }; 8731 8749 eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; 8732 8750 esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; 8733 8751 esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; ··· 8768 8786 evabic = derive2 { name="evabic"; version="0.0.3"; sha256="0wd5wjsj9gbvbncaa97g1sp0211aq3nn5jc91lvhka6h34wxkcgc"; depends=[]; }; 8769 8787 evalITR = derive2 { name="evalITR"; version="0.2.2"; sha256="0xdf3jyrsnf2jb28fwf8ydlid1n74ka7mx98jp6fidzcinw4mzmj"; depends=[]; }; 8770 8788 evaluate = derive2 { name="evaluate"; version="0.14"; sha256="0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58"; depends=[]; }; 8771 - evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; }; 8772 8789 evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; 8773 8790 evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; 8774 8791 evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; ··· 8876 8893 ez_combat = derive2 { name="ez.combat"; version="1.0.0"; sha256="1vpycf6gambwg8218wwjc9h3rhsin7qrhh0mpd3r6n9fp03y634f"; depends=[]; }; 8877 8894 ezCutoffs = derive2 { name="ezCutoffs"; version="1.0.1"; sha256="04ah9dbfwl89xi0di0dslaf8a39nynxymm8lbacgd88al5dg7y1n"; depends=[doSNOW foreach ggplot2 lavaan moments progress]; }; 8878 8895 ezEDA = derive2 { name="ezEDA"; version="0.1.1"; sha256="1qcgvcjksdajn2rhv52bgqz3n0lnxynjdx4gwhkgsy29ffa0sq2c"; depends=[dplyr GGally ggplot2 magrittr purrr rlang scales tidyr]; }; 8879 - ezcox = derive2 { name="ezcox"; version="1.0.1"; sha256="1sac1nsws73saf0zq7qbh1g3lv23dmh7ymy80q4nnxwf7zvbqmh8"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble]; }; 8896 + ezcox = derive2 { name="ezcox"; version="1.0.2"; sha256="0mikrdmi3q7qc2fvh1hk6fwy2y9xafwggyvx0cgnzzqi5gjjfki7"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble]; }; 8880 8897 ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; 8881 8898 ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; 8882 8899 ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; ··· 8912 8929 fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; 8913 8930 fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; 8914 8931 fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; 8915 - fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; }; 8916 8932 fable = derive2 { name="fable"; version="0.3.1"; sha256="185l3gd83nys11k389ha2ssdm9rkw9aackmz2cd2mvlym72rsnq7"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; 8917 8933 fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; 8918 8934 fabletools = derive2 { name="fabletools"; version="0.3.1"; sha256="0r2ik8p89w8r76v9iliqng2ysf9cqqdcmq89ilr8ccilfq3pgbks"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; ··· 8966 8982 fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="1.1.0"; sha256="122jpjis2jsd13ljjhi6ibgp1i4gg9yymkzh1rpcysj1wsxxasad"; depends=[]; }; 8967 8983 fasi = derive2 { name="fasi"; version="1.0.0"; sha256="1hfd6nl8zvn7sybji8s1pa2wl95l2vqa07rv96yn9rk07qvdc6dy"; depends=[fastAdaboost gam naivebayes]; }; 8968 8984 fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; 8969 - fasstr = derive2 { name="fasstr"; version="0.3.2"; sha256="0krd6h9vz4y3kzz13w2lq5b59v6ajr61ngcpnnk71ijn7hhmaanh"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; 8985 + fasstr = derive2 { name="fasstr"; version="0.3.3"; sha256="0x641cxhjawf4jrf465hnf0zkk120wcsrsd7r1n175x9jsq0z3q2"; depends=[dplyr e1071 fitdistrplus ggplot2 openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; 8970 8986 fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; 8971 8987 fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; 8972 8988 fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; }; ··· 8985 9001 fastText = derive2 { name="fastText"; version="1.0.1"; sha256="0l0pkr3a8qckvzazh6rsz94rab8v96y4wis2my29srkwv4h447bn"; depends=[data_table ggplot2 glue Rcpp]; }; 8986 9002 fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; 8987 9003 fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; 8988 - fastai = derive2 { name="fastai"; version="2.0.9"; sha256="10s7zp9g7fypgqablzxrfpxz7hnic41fvvmj1w9lx0yp5g26pb9k"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; 9004 + fastai = derive2 { name="fastai"; version="2.1.0"; sha256="1ssmx49c4qzvr4m84s8vwyrg890l2vfglh9rqkf4ljc1x2bkf8z1"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; 8989 9005 fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; 8990 9006 fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; 8991 9007 fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; ··· 9036 9052 fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; }; 9037 9053 fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; 9038 9054 fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; 9039 - fda = derive2 { name="fda"; version="5.4.0"; sha256="000flssclb2c1sfm2czyp1qxrfrl9rp6bd8sw87ign8165maplqf"; depends=[deSolve fds Matrix]; }; 9055 + fda = derive2 { name="fda"; version="5.5.0"; sha256="0nf7481hc04yxw93d01m0g8vpb50fc3yb38y44cb0yf8mcflgky2"; depends=[deSolve fds Matrix]; }; 9040 9056 fda_usc = derive2 { name="fda.usc"; version="2.0.2"; sha256="0z44vkzjm2h6r5af0k1iic1szvw82rbwjrm541zlwn2jycj4q96a"; depends=[doParallel fda foreach iterators MASS mgcv nlme]; }; 9041 9057 fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; 9042 9058 fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; 9059 + fdaMocca = derive2 { name="fdaMocca"; version="0.1-0"; sha256="0jqk07cs62hhsp68bpf0lcggn547jp7qjc4w55dq51fhshppc280"; depends=[doParallel fda foreach Matrix mvtnorm]; }; 9043 9060 fdaPDE = derive2 { name="fdaPDE"; version="1.0-9"; sha256="06hm1f30rpy37xz9ybvhk759y10p8ijy7slnl9cvp4gqwzy2i8b7"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; 9044 9061 fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.2"; sha256="0rs61ja58mxpadfgkvdjq14rgaikcga0alc5a1afnrjx4djswl1k"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; 9045 9062 fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; ··· 9052 9069 fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; 9053 9070 fddm = derive2 { name="fddm"; version="0.4-0"; sha256="04fccbgplx4gv4qcmkxps7nhfl477ga7ljdv9ff3fmmp27p7w5iq"; depends=[Rcpp]; }; 9054 9071 fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; 9055 - fdm2id = derive2 { name="fdm2id"; version="0.9.5"; sha256="0z4csd2bi0pavfaqvkidfdvri14miwh1v752m6f1h224j47krcq8"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; 9072 + fdm2id = derive2 { name="fdm2id"; version="0.9.6"; sha256="14bln0vx3qjgqb27dpl0fcd60bk42bha75ki6lkn4w1hrhcd1rr8"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; 9056 9073 fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; 9057 9074 fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; 9058 9075 fdrci = derive2 { name="fdrci"; version="2.2"; sha256="0q5m7h6zfbwv2ab8ab6p4d8y8ib24ryvmngyk564589dl2fwrn6q"; depends=[ggplot2]; }; ··· 9072 9089 fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; }; 9073 9090 fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; 9074 9091 federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; 9075 - fedmatch = derive2 { name="fedmatch"; version="2.0.3"; sha256="1kxj0468sr3wv7byhviqz6cwn25sz41lrwhd168j1x6csjiakxgc"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; 9092 + fedmatch = derive2 { name="fedmatch"; version="2.0.4"; sha256="0vc9ax9nh2wy3m1l7m2fhmp75kx7bf0i2g3zg5svz3579ygihar4"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; 9076 9093 fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; 9077 9094 fedstatAPIr = derive2 { name="fedstatAPIr"; version="0.1"; sha256="0ll86fp9kaddacsy9jfnwrq353kx4gny8vmxg8vnfx9kcl3bv95z"; depends=[dplyr httr jsonlite magrittr readsdmx rlang rsdmx rvest stringr xml2]; }; 9078 9095 feisr = derive2 { name="feisr"; version="1.2.0"; sha256="012rspsw1xwl11gdr3nlpdmf24y9d2shwj81iqj1xill3l0mchwc"; depends=[aod dplyr Formula plm Rdpack]; }; ··· 9082 9099 fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; 9083 9100 fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; 9084 9101 ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; 9085 - ff = derive2 { name="ff"; version="4.0.4"; sha256="1rfj2ff5cxzdp9nvfnbgmswc1jvxz5vkxqgpv6gprwk32a0z3v12"; depends=[bit]; }; 9102 + ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; 9086 9103 ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; }; 9087 9104 fflr = derive2 { name="fflr"; version="1.9.2"; sha256="0k8jsrq0nznx33bzl4abzs1dk740vqfrzc5g8mx291bv5g519qag"; depends=[httr jsonlite tibble]; }; 9088 9105 ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; ··· 9110 9127 fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; 9111 9128 fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; }; 9112 9129 fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; 9113 - fields = derive2 { name="fields"; version="12.5"; sha256="08jfqlz42vq23h2yq279cs2rva9fadi4q6cmk4dvixrmyprx5xyk"; depends=[maps spam viridis]; }; 9130 + fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; 9114 9131 fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; 9115 9132 figpatch = derive2 { name="figpatch"; version="0.1.0.1"; sha256="1chshlyc3ygyvgzyph4mix3a6kvv4w0vbnss58472h0mgl7mgx8v"; depends=[ggplot2 magick patchwork]; }; 9116 9133 file2meco = derive2 { name="file2meco"; version="0.1.0"; sha256="1lw3w8l2563ccvb4v0hj8qk96yam5p3rf0hcah6s93pyrz1mimyx"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; ··· 9141 9158 fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; 9142 9159 fipio = derive2 { name="fipio"; version="1.0.0"; sha256="118gir8gnwip2hzf4q4vv96rkw050qmb0kv3hq2cwlfscbrwza9f"; depends=[]; }; 9143 9160 fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; 9144 - firebase = derive2 { name="firebase"; version="0.2.0"; sha256="1nf90j24zzkhrpxm18vcfb8h0rc6jsdy6iiw119nvh4qn2ridvrk"; depends=[cli jose openssl R6 shiny]; }; 9161 + firebase = derive2 { name="firebase"; version="0.2.1"; sha256="0w7mq0kkjvawvw0gss95j43kjzircs2j43zdkaly6v6qnpzgc036"; depends=[cli jose openssl R6 shiny]; }; 9145 9162 firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; 9146 9163 fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; 9147 9164 fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; ··· 9173 9190 fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; 9174 9191 fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; 9175 9192 fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; 9176 - fixest = derive2 { name="fixest"; version="0.10.0"; sha256="108vsdsilyx4sykj1qzxmsvg395c13hq1jp53k3hgv1w8khhg9sp"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; 9193 + fixest = derive2 { name="fixest"; version="0.10.1"; sha256="0gjzgchlcx8vmfbqg80xwj6azna5l7dw9l31bcybd2fg817mixvm"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; 9177 9194 fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; 9178 9195 flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; 9179 9196 flagr = derive2 { name="flagr"; version="0.3.2"; sha256="195c78cml2pjzfvpkaxbzcg1dfdqxi76138p0v3x3zzva9d8nlji"; depends=[]; }; ··· 9215 9232 flipr = derive2 { name="flipr"; version="0.3.1"; sha256="1k6ykmj58c6vv8p1cn2wy9amlyxgrw3vphh97bv0pqqxyhnrlxjm"; depends=[cli dials ggplot2 magrittr optimParallel pbapply purrr R6 Rcpp rgenoud rlang tibble usethis viridisLite withr]; }; 9216 9233 flipscores = derive2 { name="flipscores"; version="1.1.0"; sha256="0pznbv8gq6jx0hd9dq6yjxyz4p75h8x0jznfa02yh4xdzjmamiw6"; depends=[car flip MASS plyr]; }; 9217 9234 float = derive2 { name="float"; version="0.2-6"; sha256="1bx5yxkb123001v31jjk7h7f0qissmjydvbil5cj3jvmqkayq1a1"; depends=[]; }; 9218 - flobr = derive2 { name="flobr"; version="0.2.1"; sha256="16qxsvpdznw0wlmcxc6jwf550hx7yx1rifds00lq0kxly1pc4aak"; depends=[blob chk lifecycle]; }; 9235 + flobr = derive2 { name="flobr"; version="0.2.2"; sha256="1khl7zld1fwigk20sl5ibacyrbln40pkfqpzpxj6si7m1q6yvv1a"; depends=[blob chk lifecycle]; }; 9219 9236 flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; 9220 9237 flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; 9221 9238 flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; ··· 9320 9337 fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; 9321 9338 fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; 9322 9339 fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; 9323 - fracture = derive2 { name="fracture"; version="0.1.3"; sha256="0zhal8i6bxmif90yyynd7mhdnfb8f4hv4zs421r8ky4wr90ki429"; depends=[Rcpp]; }; 9340 + fracture = derive2 { name="fracture"; version="0.2.0"; sha256="18dyq1g9b8gpac5xjry9hkmql5fmwyyghkmrrgkrrvy42q8ygn91"; depends=[Rcpp]; }; 9324 9341 fragility = derive2 { name="fragility"; version="1.1"; sha256="0gjxc4bykqjmj54mxjh27bzkbf8ydrzzzlb7xnq9jljmr139zhyk"; depends=[metafor netmeta plotrix]; }; 9325 9342 frailtyEM = derive2 { name="frailtyEM"; version="1.0.1"; sha256="0ajqmn8353va8k3idsl90xsrhpdqarfmvg84d4kwayxlqy6dmbb0"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; 9326 9343 frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; ··· 9395 9412 fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; 9396 9413 fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; 9397 9414 funData = derive2 { name="funData"; version="1.3-8"; sha256="146mnv09mbjr7vwvwlds1jc91vzbj7df0kb70qmiav0a8bvslngi"; depends=[abind fields foreach]; }; 9398 - funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; 9415 + funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; 9399 9416 funGp = derive2 { name="funGp"; version="0.2.2"; sha256="1khdnxr7gsswv0v867anh12ah7whqmv9q9i06w1axv13jrriwbac"; depends=[doFuture foreach future knitr microbenchmark progressr qdapRegex scales]; }; 9400 9417 funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; }; 9401 9418 funLBM = derive2 { name="funLBM"; version="2.2"; sha256="0krv0cid34rgcik0hk1fhvsi3cbc19scgsnssczfb0c79jkxy3cw"; depends=[abind fda funFEM ggplot2]; }; ··· 9426 9443 futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; 9427 9444 futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; 9428 9445 futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; 9429 - future = derive2 { name="future"; version="1.22.1"; sha256="1kgdpfipnwi15wz2xvlfg3bmq424hhjzja5bks01v3phra2lmcl7"; depends=[digest globals listenv parallelly]; }; 9446 + future = derive2 { name="future"; version="1.23.0"; sha256="1y5qzpsg0r2dccynyybbb2ngxbl1y3phs1dq2jj3f2bwhc7chsfq"; depends=[digest globals listenv parallelly]; }; 9430 9447 future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; 9431 9448 future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; 9432 9449 future_callr = derive2 { name="future.callr"; version="0.6.1"; sha256="037xgv604vrbdqx4zbai8nqd2d9cf47f0rwxd7iihr09y8qknd19"; depends=[callr future]; }; ··· 9525 9542 garchx = derive2 { name="garchx"; version="1.3"; sha256="0fpanzl6nfq6dar5chmqqfndb3w01mcypkhj0ya6v3d77m02b5mf"; depends=[zoo]; }; 9526 9543 gargle = derive2 { name="gargle"; version="1.2.0"; sha256="0fypj70c1fjmvs57birik76wfx8a2fs4gzicbb52k57i6clwlijd"; depends=[cli fs glue httr jsonlite rappdirs rlang rstudioapi withr]; }; 9527 9544 gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; 9545 + garma = derive2 { name="garma"; version="0.9.10"; sha256="1a6j1ym4rn4bvnh6b17gczg9x7f8gvmjw094694smkw0js5v7ig8"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; 9528 9546 garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; 9529 9547 gaselect = derive2 { name="gaselect"; version="1.0.9"; sha256="089gyllcmq5rgf5yffclifc7rc8rmq4wk1dhznigxkij4zap67hx"; depends=[Rcpp RcppArmadillo]; }; 9530 9548 gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; ··· 9563 9581 gcmr = derive2 { name="gcmr"; version="1.0.2"; sha256="0mh542na2byb4aha548lfkzllfnk4rmzcm23jm6642pndvxpnfmj"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; 9564 9582 gconsensus = derive2 { name="gconsensus"; version="0.3.1"; sha256="0zray67q5saqs4n3k2v3hm7ly7hpfibvpvlzvqfhbfj98accm7in"; depends=[coda MASS rjags]; }; 9565 9583 gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; 9566 - gdalUtilities = derive2 { name="gdalUtilities"; version="1.1.2"; sha256="1vw30gnmn3vrghm3n0yqs5swz7a3d07n0zd5flgiqrlya35hlhsc"; depends=[raster sf]; }; 9584 + gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.0"; sha256="0nxnw9azlml13a6rqhxjrwq8v7fb2pjcb07dp5r2p5bzyzvldm7a"; depends=[sf]; }; 9567 9585 gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; 9568 - gdalcubes = derive2 { name="gdalcubes"; version="0.4.1"; sha256="1sckd2sqcf0fklr8qdwkalri3xdagrhxd0bw3jisb2wqwvdxjjzw"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; 9586 + gdalcubes = derive2 { name="gdalcubes"; version="0.5.0"; sha256="074vidv9ccklbvfhfyzwr0pfqdvh9bdbh9xwlrd6bxbd0q4sq8gk"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; 9569 9587 gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; 9570 9588 gde = derive2 { name="gde"; version="0.1.4"; sha256="1ypax1gwi8f9fkfmbm5qb845b70ch44m19rw8spi34fn3yrbb17l"; depends=[data_table DBI dplyr DT ggplot2 httr jsonlite leaflet odbc progress R_utils readr rgbif shiny shinycssloaders shinyWidgets stringr XML]; }; 9571 9589 gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; ··· 9593 9611 gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; 9594 9612 gemtc = derive2 { name="gemtc"; version="1.0-1"; sha256="150892ybxkci8frnjj070qzc1sqx5a9ba2r6n8mii12hgrz4h1vm"; depends=[coda forcats igraph meta plyr Rglpk rjags truncnorm]; }; 9595 9613 gen2stage = derive2 { name="gen2stage"; version="1.0"; sha256="16xbzgkjskzm1wik3dznvwhqddrpmcgsgd372n4a67rbb46jgx6r"; depends=[clinfun]; }; 9614 + gen3sis = derive2 { name="gen3sis"; version="1.4"; sha256="00zfxgvh204x759p2bjdi7wwxwp7c9gvl0p8v9c7zh8gkg2767pz"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; }; 9596 9615 gen5helper = derive2 { name="gen5helper"; version="1.0.1"; sha256="0z7hisn57md18vcfb6f44hy6zzp9dirrjyxi4x1id3mqa3mligb6"; depends=[dplyr ggplot2 minpack_lm naturalsort plyr pracma rlang tidyr]; }; 9597 9616 genBaRcode = derive2 { name="genBaRcode"; version="1.2.4"; sha256="1y7rq2fvv2s7x054ribp2x6vsp8dh49dm43rhn9cp2fn4qf05f7r"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; 9598 9617 genSEIR = derive2 { name="genSEIR"; version="0.1.1"; sha256="02lprxxpf7ll23habq05b6slgbh978k09sqr6myr2jhlax2snxvk"; depends=[ggplot2 minpack_lm nlsr pracma]; }; ··· 9617 9636 generalCorr = derive2 { name="generalCorr"; version="1.1.9"; sha256="1x0nh1z9vf68vyvdrv100rrpyabb2iwxn7p369zx950i47qy9a45"; depends=[lattice meboot np psych xtable]; }; 9618 9637 generalhoslem = derive2 { name="generalhoslem"; version="1.3.4"; sha256="0fmfhmdb16gf3v9h50vif4f3f6bm03qq7wplnmzyxa80jb60fcc0"; depends=[MASS reshape]; }; 9619 9638 generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; 9620 - generics = derive2 { name="generics"; version="0.1.0"; sha256="0qw7r0d2qvlj1pvrlpv30d6akml624ydxkk19hv85iv6pfyx2wdb"; depends=[]; }; 9639 + generics = derive2 { name="generics"; version="0.1.1"; sha256="04hrn6g5m5vi3znrcha3jw2q16lnmm3ygx2jl5aqiahg3azqwix2"; depends=[]; }; 9621 9640 genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; 9622 9641 genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; 9623 9642 geneticae = derive2 { name="geneticae"; version="0.1.0"; sha256="0d37g33xkaym49zq6aqv4xj40hm25qbr7y080vka8nid7n29y7f7"; depends=[agridat bcv calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rrcov scales tidyr]; }; ··· 9643 9662 genscore = derive2 { name="genscore"; version="1.0.2"; sha256="0i1wg65cpyc7x1h8dbq0i6q8979lw15zhmn7zn1r8gj3nxl7my0b"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; 9644 9663 genset = derive2 { name="genset"; version="0.1.0"; sha256="02zldi136sfnq1i8pwb3b97zd44pjdgnfadk4bqp36wm8x95phwi"; depends=[]; }; 9645 9664 gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; 9665 + genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; 9646 9666 gensvm = derive2 { name="gensvm"; version="0.1.5"; sha256="1r0f3l6df1sn3vx5sjssx8p35lw100q0qz6v1fckdfw04z53g4im"; depends=[]; }; 9647 - geoBayes = derive2 { name="geoBayes"; version="0.6.3"; sha256="153a7kp73wxm5hzzq038p3mnykhakv0c9qa8fpbjijccmbi89970"; depends=[coda optimr sp]; }; 9667 + geoBayes = derive2 { name="geoBayes"; version="0.7.0"; sha256="0bjr77ifmpf5y560iwzm0sv8mkvz6c4isn78gmdy6m8531b11frh"; depends=[coda optimx sp]; }; 9648 9668 geoFKF = derive2 { name="geoFKF"; version="0.1.0"; sha256="0fapxfckyhgs1lzaviicnrhmjzdlkxfg2ccn46zcrybqq995g9js"; depends=[numDeriv Rcpp RcppArmadillo]; }; 9669 + geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; 9649 9670 geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; 9650 9671 geoR = derive2 { name="geoR"; version="1.8-1"; sha256="1lvgkpvv4a05lsb1dgphpv733lxbpcj7p2bj1yjjbfch8n04f1lr"; depends=[MASS RandomFields sp splancs]; }; 9651 9672 geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; ··· 9664 9685 geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; }; 9665 9686 geofacet = derive2 { name="geofacet"; version="0.2.0"; sha256="1aylx2hwqk75y73az1zf0s5mjww77d7i9kafbkzw383f0i5qx42w"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sf sp]; }; 9666 9687 geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; 9667 - geofi = derive2 { name="geofi"; version="1.0.4"; sha256="1j1b1j1ld1zjj88k9xwa412v7xjjp0jv76g2yljlq7pq3970n6i9"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; 9688 + geofi = derive2 { name="geofi"; version="1.0.5"; sha256="06d0nr42gdb5lm3kcrx2jacdpl26m1wrqsvc85w87ff7rxgp145s"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; 9668 9689 geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; 9669 9690 geohashTools = derive2 { name="geohashTools"; version="0.3.1"; sha256="0ks6ga1vsp5z7sy0xcq9nacffmfsx6yqdlnhqflsb8zb9qbygazf"; depends=[]; }; 9670 9691 geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; ··· 9688 9709 geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; 9689 9710 geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; 9690 9711 georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; 9691 - geos = derive2 { name="geos"; version="0.1.1"; sha256="18b52rmf8sgx2hxj50918v0ql8wlrnw6kyx3vrykb144cm98w6d5"; depends=[libgeos wk]; }; 9712 + geos = derive2 { name="geos"; version="0.1.2"; sha256="04ha875a416fdw2ki0iilal2blnblf0hdda5n5msa5gi70ycd3db"; depends=[libgeos wk]; }; 9692 9713 geosapi = derive2 { name="geosapi"; version="0.5-1"; sha256="0ny1nzhfwj9l3gyzls3ksikmjzx06a3420nb3l6b2711v9zymv45"; depends=[httr keyring openssl R6 XML]; }; 9693 9714 geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; 9694 9715 geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; ··· 9754 9775 ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; 9755 9776 ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; 9756 9777 ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; 9757 - ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.1.4"; sha256="0657qql1spnj6giyj7f1gi28fw06nl23qxrir88d49ddbv1rn8ab"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf stringr tibble]; }; 9778 + ggVennDiagram = derive2 { name="ggVennDiagram"; version="1.2.0"; sha256="1mjs488npnxd53nsw936iw2vzv7z38h8d02pm4lwrz4i83jg3www"; depends=[dplyr ggplot2 magrittr plotly purrr RVenn sf stringr tibble]; }; 9758 9779 ggalignment = derive2 { name="ggalignment"; version="1.0.0"; sha256="07f1l7pav36i2z75bvwcwkamw5i36fh5klh5djglxnq1a3v8jm79"; depends=[dplyr ggimage ggplot2 magrittr rlang]; }; 9759 9780 ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; 9760 9781 ggalluvial = derive2 { name="ggalluvial"; version="0.12.3"; sha256="0mkan9gxg3yxjism22yxbhvlh2lh7wpbrqpb355za790prcmjbh3"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; ··· 9764 9785 ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; 9765 9786 ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; 9766 9787 ggborderline = derive2 { name="ggborderline"; version="0.1.0"; sha256="02m7g0fmayp0zscj3x167n96cj6kn62a8nw67d42k6p74bard2sy"; depends=[ggplot2 scales]; }; 9767 - ggbreak = derive2 { name="ggbreak"; version="0.0.6"; sha256="13f60i6qs880mv7wh39c0wpakbid21jr2dxvvrx6kskqyf24b1jb"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; 9788 + ggbreak = derive2 { name="ggbreak"; version="0.0.7"; sha256="14cs0fni67gidkkaflqvckgqbi4hjwxpzwyv6p8h2dxy8n5m6x92"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; 9768 9789 ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; 9769 9790 ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; 9770 9791 ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ··· 9777 9798 ggdendro = derive2 { name="ggdendro"; version="0.1.22"; sha256="0skbj487b6f6pj2iz4yq2b9gbgb39cv5dyzhdl3w7ay1k0s5z9ph"; depends=[ggplot2 MASS]; }; 9778 9799 ggdist = derive2 { name="ggdist"; version="3.0.0"; sha256="08rkqagwx1673fyckv37fy7wf0yklsddpxbmx8k15v2rbfbac8d9"; depends=[distributional dplyr ggplot2 HDInterval rlang scales tibble tidyselect vctrs withr]; }; 9779 9800 ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; 9780 - gge = derive2 { name="gge"; version="1.6"; sha256="0l5xhbn3wdvsmr8gavj8r3yn8mcfw21pmzdfy4wygqa6jamcsr59"; depends=[nipals reshape2]; }; 9801 + gge = derive2 { name="gge"; version="1.7"; sha256="1lis0w4n0fns1fsl95p1pbvbqkb3vlwzb5pk5hqlzadjrnrs6gzw"; depends=[nipals reshape2]; }; 9781 9802 ggeasy = derive2 { name="ggeasy"; version="0.1.3"; sha256="0zp9jhm8vc1gpja5s6g92snd1jnskadafc226l51y8cps7lj8f6q"; depends=[ggplot2 rlang]; }; 9782 9803 ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; 9783 9804 ggeffects = derive2 { name="ggeffects"; version="1.1.1"; sha256="0xrb105kblkj3l9zlj9yy52rjlmx5x2aai1wwb5zvjr1f6nlc84l"; depends=[insight MASS sjlabelled]; }; 9784 9805 ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; 9785 9806 ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; 9807 + ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; }; 9786 9808 ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; 9787 9809 ggfittext = derive2 { name="ggfittext"; version="0.9.1"; sha256="0yckj6awx42yrlv7lfq9jplnzqv5lpvgmb0327bx14pc3q36055f"; depends=[ggplot2 shades stringi]; }; 9788 9810 ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; 9789 9811 ggforce = derive2 { name="ggforce"; version="0.3.3"; sha256="0bwzjbjl678xvc2ihm80dwn9pidwafqjdab3k299csys16s3na1a"; depends=[ggplot2 gtable MASS polyclip Rcpp RcppEigen rlang scales tidyselect tweenr withr]; }; 9790 9812 ggformula = derive2 { name="ggformula"; version="0.10.1"; sha256="1ph5jd8svk8hmshi894vmmpq3zwgdmf4yn3gmdlkad68z8jynhsp"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; 9791 - ggfortify = derive2 { name="ggfortify"; version="0.4.12"; sha256="13f3ggn94czw7xw5qxwrdncr2h7z7bvwgw8zxni8wkc8x3kbz5rd"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; 9813 + ggfortify = derive2 { name="ggfortify"; version="0.4.13"; sha256="0qls8pyndrlwx75wzlc0xmk04qq263d7065r3d6kvay7haa4nm40"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; 9792 9814 ggfun = derive2 { name="ggfun"; version="0.0.4"; sha256="07njcjcj212zxanq8x3nkh7mgvqmym08rx5s41rz9flhk9gkc9jr"; depends=[ggplot2 rlang]; }; 9793 9815 ggfx = derive2 { name="ggfx"; version="1.0.0"; sha256="1q9ppp88yj6lplj7wxnf18aa7a8f5iz35765bdfhsrkdxlrkny7h"; depends=[ggplot2 gtable magick ragg rlang]; }; 9794 9816 gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; 9795 9817 gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; 9796 9818 ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; 9797 9819 gggibbous = derive2 { name="gggibbous"; version="0.1.1"; sha256="1sy9d9hl04b13yz4563bzsdznjdh3xmikdrsqg8kdv8wn481lqbd"; depends=[ggplot2 scales]; }; 9798 - ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; 9799 9820 ggh4x = derive2 { name="ggh4x"; version="0.2.0"; sha256="0gv9ckkdqbcjknzsv8h3955wnikawdfypr279v74hvwyq86af29r"; depends=[ggplot2 gtable rlang scales vctrs]; }; 9800 9821 gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; }; 9801 9822 gghalves = derive2 { name="gghalves"; version="0.1.1"; sha256="1w4j8grir1i8ar7fdsk4f6czkl5j2wwn67y746mis2diwnzhcil3"; depends=[ggplot2 gtable]; }; ··· 9842 9863 ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; 9843 9864 ggplotify = derive2 { name="ggplotify"; version="0.1.0"; sha256="12mk3fa8fdjxj7xxz21jkr7h91w5wdgwjqhszcz1qffwsgb773qp"; depends=[ggplot2 gridGraphics yulab_utils]; }; 9844 9865 ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; 9845 - ggpmisc = derive2 { name="ggpmisc"; version="0.4.3"; sha256="0ff84ybj4648c1v05ng3l62g9n52igjwvm320qkfbdzdxzncpzik"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; 9866 + ggpmisc = derive2 { name="ggpmisc"; version="0.4.4"; sha256="01dnr2a33zmgi0gjsxlcz4hp68b18xsi8z1lkhgcla5im59qf9xi"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; 9846 9867 ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; 9847 9868 ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; 9848 9869 ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; ··· 9851 9872 ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; 9852 9873 ggpval = derive2 { name="ggpval"; version="0.2.4"; sha256="0zi3k79iy8pwnrgi9r9l4r9ghv1db9cxsagif8wsrlak4nr8akza"; depends=[data_table ggplot2]; }; 9853 9874 ggquickeda = derive2 { name="ggquickeda"; version="0.2.1"; sha256="1yql17wla60lg713cd4kr4906i4ngkvyg0s962zpri76g2z3acvv"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel ggstance gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; 9854 - ggquiver = derive2 { name="ggquiver"; version="0.2.0"; sha256="1hsayqxf4brck1rx97yyprw1axc83lksgf7mn3rh8hqx4h1f5f0f"; depends=[dplyr ggplot2]; }; 9875 + ggquiver = derive2 { name="ggquiver"; version="0.3.0"; sha256="1by2drrikssn0dckxgcdscvyqva7mfcpim6y0hrrqwjv6ld8a6q3"; depends=[ggplot2]; }; 9855 9876 ggraph = derive2 { name="ggraph"; version="2.0.5"; sha256="0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis withr]; }; 9856 9877 ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; 9857 9878 ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ··· 9866 9887 ggseg3d = derive2 { name="ggseg3d"; version="1.6.3"; sha256="1rpq2wgyyladz5nkngkvbf3cy4pw212dj1vfh7ksh0bxi7v1k6mh"; depends=[dplyr magrittr plotly scales tidyr]; }; 9867 9888 ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; 9868 9889 ggshadow = derive2 { name="ggshadow"; version="0.0.2"; sha256="08bnjl7zsa4kkjl4kadmwss84bngd36xqqly91lvv359qrzr9hzq"; depends=[ggplot2 glue rlang scales]; }; 9869 - ggside = derive2 { name="ggside"; version="0.1.2"; sha256="0p25ad26s44y9sdja1a3rgyp0qrhwxxajvszl21kfszl7qlc3pzj"; depends=[ggplot2 glue gtable rlang scales]; }; 9890 + ggside = derive2 { name="ggside"; version="0.1.3"; sha256="0jmdw7n2lxb70h1zrb7gh291bxhmf9xb9n4bmmiclkpdvy9wim64"; depends=[ggplot2 glue gtable rlang scales]; }; 9870 9891 ggsignif = derive2 { name="ggsignif"; version="0.6.3"; sha256="1ad774c7s7y4i00xd89lfigr9aybl94q98ch598k3rchanr4b1fa"; depends=[ggplot2]; }; 9871 9892 ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; }; 9872 9893 ggsoccer = derive2 { name="ggsoccer"; version="0.1.6"; sha256="1b3cx2ym3pknshrxmdgwzyx92c1hl6kyvxm2s8izlaa21z8v6z59"; depends=[ggplot2]; }; ··· 9919 9940 gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; 9920 9941 gitgadget = derive2 { name="gitgadget"; version="0.6.4"; sha256="1vfrxa9v39j661s5dv6p5kgrwyr1drhgi6nykpfcm34mvfsgwk83"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; 9921 9942 githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; 9922 - gitignore = derive2 { name="gitignore"; version="0.1.4"; sha256="15rpzb3szx6k5xwf89p3fyzdbk44ahyxgx35jza4ln3pl16hldz1"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; 9943 + gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; 9923 9944 gitlabr = derive2 { name="gitlabr"; version="2.0.0"; sha256="0snd1pscv09wn3vjvfbvf87dcd43i25m2x3ra8vw37c2zd8hj500"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; 9924 9945 gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; 9925 9946 givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; ··· 9981 10002 globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; 9982 10003 glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; 9983 10004 glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; 9984 - glpkAPI = derive2 { name="glpkAPI"; version="1.3.2"; sha256="1qwq6vbx1symly6k72xgj5qzqw7j6wdsgiflm649pdxnisfgzh00"; depends=[]; }; 10005 + glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; 9985 10006 glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; 9986 10007 glue = derive2 { name="glue"; version="1.4.2"; sha256="1bgpirdvjrf0da734clrixawvpdap4lpda4g89vais96589m8wwz"; depends=[]; }; 9987 10008 gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; ··· 10053 10074 gower = derive2 { name="gower"; version="0.2.2"; sha256="0c9n921wn4hhlvjq96r4nkk96s5788376cbldr7y7bwz348200iz"; depends=[]; }; 10054 10075 goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; 10055 10076 gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; 10056 - gpbStat = derive2 { name="gpbStat"; version="0.3.4"; sha256="0gfmqb8va6jyi3mx7k5jm3n6cgwghd17rzdsh0xp5dznpxrqim65"; depends=[]; }; 10077 + gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; 10057 10078 gpboost = derive2 { name="gpboost"; version="0.6.7"; sha256="1q2y4vb3lf0phpgag8mj6wigrkzij4hl5amx1fv7f8b4aypz55xx"; depends=[data_table Matrix R6 RJSONIO]; }; 10058 10079 gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; 10059 10080 gpg = derive2 { name="gpg"; version="1.2.3"; sha256="1dm68bkwgffb6304q1dzjdd9acih36j5pn8jwkh3a331g23g6jii"; depends=[askpass curl]; }; ··· 10066 10087 gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; 10067 10088 gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; 10068 10089 gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; 10090 + gpx = derive2 { name="gpx"; version="1.0.1"; sha256="0p7fcqswd9swsscf0pjza7jmvwc25k2hrbdhb42hy90q28rdpmqm"; depends=[lubridate rvest xml2]; }; 10069 10091 gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; 10070 10092 gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; 10071 10093 grImport = derive2 { name="grImport"; version="0.9-4"; sha256="0y9lsvfp1350das5v5d5pkv10z0n1crc7k4zn9inr94f9s4kjjr5"; depends=[XML]; }; ··· 10096 10118 graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; 10097 10119 graphql = derive2 { name="graphql"; version="1.5"; sha256="0zi1l93yk5rlgdy4j2nph14w0h8kgvnbzk9fi2jfys8s3fz54ksr"; depends=[jsonlite Rcpp]; }; 10098 10120 graphsim = derive2 { name="graphsim"; version="1.0.2"; sha256="09is0yr17vxr08zb3p240n0aapm63418dzx4ilwq08y8050jqqr7"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; 10099 - grates = derive2 { name="grates"; version="0.2.0"; sha256="10b1fazia9ari0czdscyl19kzma180ww7zlbwy1r4c26jylrwkba"; depends=[clock ellipsis rlang vctrs]; }; 10121 + grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; 10100 10122 gratia = derive2 { name="gratia"; version="0.6.0"; sha256="1425dq805a0hk1w243y0mzvdyqvi0n08ghwvsgfwdx3i0d066nba"; depends=[dplyr ggplot2 mgcv mvnfast patchwork purrr rlang tibble tidyr vctrs]; }; 10101 10123 graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; 10102 10124 gratis = derive2 { name="gratis"; version="0.2.1"; sha256="035jk2nc8xs0n3ak6k6i42h5gw2n57rrrarb1xwb17khg05dzk25"; depends=[doRNG dplyr foreach forecast GA magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; ··· 10141 10163 groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; 10142 10164 groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; 10143 10165 groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; 10144 - groupdata2 = derive2 { name="groupdata2"; version="1.5.0"; sha256="0ghfv6jwd2mhrgahmy7m197hrfifk86bxkcpwvixrwgzalkgx18j"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; 10166 + groupdata2 = derive2 { name="groupdata2"; version="2.0.0"; sha256="1s642fj0zwr6lw5dwf4y351igz0y2yl7g42wa8wi1wpa65p62553"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; 10145 10167 grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; 10146 10168 groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.2"; sha256="015av2087i0vxh3axl91crwvparhpc4w2p2j9fq7wylg1gsarraa"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; 10147 10169 groupr = derive2 { name="groupr"; version="0.1.0"; sha256="1gych92dpyxg2vfm3h6djw61d9z2n6q2kvbz1xpq1p0zcyiw16gy"; depends=[dplyr purrr rlang tibble tidyr vctrs]; }; ··· 10198 10220 gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; 10199 10221 gtools = derive2 { name="gtools"; version="3.9.2"; sha256="0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83"; depends=[]; }; 10200 10222 gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; 10201 - gtrendsR = derive2 { name="gtrendsR"; version="1.4.8"; sha256="00qzwlasi6l56raf4d7w3287qzhmq5j3aqi7zcxv11kl33nbnams"; depends=[anytime curl ggplot2 jsonlite]; }; 10223 + gtrendsR = derive2 { name="gtrendsR"; version="1.5.0"; sha256="15jpda67c81j9qsjcx1kffk0my198z7myafsdw91chj7hjzyw6kl"; depends=[anytime curl ggplot2 jsonlite]; }; 10202 10224 gtsummary = derive2 { name="gtsummary"; version="1.5.0"; sha256="19qi0w1ymvaw9m3l1ynj681q4bqhrnjn0ir8jg50ia5jql8mxpal"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; 10203 10225 guaguas = derive2 { name="guaguas"; version="0.2.0"; sha256="1b5bmjd3l9npmjlmd3qq3kxcrm1dqv8m60s89fcybjlaf0942ms8"; depends=[]; }; 10204 10226 guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; ··· 10224 10246 gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.2"; sha256="0wlr8iw9hb06va9nswiz5335gi9af2mg0gh5w13kkr8knz4c7d9f"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; 10225 10247 gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; 10226 10248 gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; 10227 - gwsem = derive2 { name="gwsem"; version="2.1.2"; sha256="0678p3xxbkdyz5gs097pjykk9cviyn9h16cbwfk5kpxxrs3ry3x3"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; 10249 + gwsem = derive2 { name="gwsem"; version="2.1.3"; sha256="0jvwgam7y2zxpcqc1idxjbfjva8rjjv13vlgsagcxryppahbk0n1"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; 10228 10250 gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; 10229 10251 h2o = derive2 { name="h2o"; version="3.34.0.3"; sha256="07lkj7ssxqbxp72l2g3bn3v2k22b0b9166z8r48ydskifagpnw1a"; depends=[jsonlite RCurl]; }; 10230 10252 h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; ··· 10296 10318 hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; 10297 10319 hdme = derive2 { name="hdme"; version="0.3.4"; sha256="0hm41zy4pxqh71bb2ahcnad6484qk4ak43sd43ix1jrqgrqczm5a"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; 10298 10320 hdnom = derive2 { name="hdnom"; version="6.0.0"; sha256="0wszxxfz5xkyqd3xgc9g3d5iwwsfkq9517bgp416h6l31ynxxrwn"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survAUC survival]; }; 10299 - hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; }; 10300 10321 hdpca = derive2 { name="hdpca"; version="1.1.5"; sha256="0xcakpnp363lz98y3h87p1yhj0gs3f94gx2i8kz4mcizn1ll5xbd"; depends=[boot lpSolve]; }; 10301 10322 hdrcde = derive2 { name="hdrcde"; version="3.4"; sha256="16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; 10302 10323 hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; ··· 10305 10326 healthyR = derive2 { name="healthyR"; version="0.1.6"; sha256="1px9c0i0qf0b85nbwjv0cccy2viqvi6c2pd1vx3s6yncj3vx3a5x"; depends=[cowplot dplyr ggplot2 ggrepel lifecycle lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; 10306 10327 healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.2"; sha256="1gvqanwzdimp093yvvrf2f542n3jgz1wah53bgsl954bd3vp4yaz"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr parsnip purrr recipes rlang rsample tibble tidyr timetk]; }; 10307 10328 healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; 10308 - healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.3"; sha256="03aafqdbr378nsfn326jzbwpahga2bkh3b5l532q36dlk1dbdc5n"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; 10329 + healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.4"; sha256="0ggksxsaawd6zpfhhaic99yrl0g2w81nmm147qldwsshd252xrym"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; 10309 10330 healthyverse = derive2 { name="healthyverse"; version="1.0.1"; sha256="088vf0va382341jri9y8p5ygdz76jv3fnjf6y0ldf535grifb3dc"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble]; }; 10310 10331 heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; 10311 10332 heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; ··· 10313 10334 heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; 10314 10335 heatmapFlex = derive2 { name="heatmapFlex"; version="0.1.2"; sha256="0va8ac2wf1mzm6zamhfpid3xkm7310c6b695c5wbc705nwijnd9q"; depends=[Biobase Heatplus RColorBrewer]; }; 10315 10336 heatmaply = derive2 { name="heatmaply"; version="1.3.0"; sha256="1w8yyzb68laxd4zxycvgmpqj5wnyidjgv1vbzbxndp9p92f2cp8a"; depends=[assertthat colorspace dendextend egg ggplot2 htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; 10316 - heatwaveR = derive2 { name="heatwaveR"; version="0.4.5"; sha256="0pcw305mxxy1abp4n9kh59gqd0axnlhhagnzzm5cfp2m5zs343iy"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; 10337 + heatwaveR = derive2 { name="heatwaveR"; version="0.4.6"; sha256="172qg8dgyn5lbwmyq8dxdccxr4aqaq6iixn5dqb4fy99ahgdbhyv"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; 10317 10338 heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; }; 10318 10339 heddlr = derive2 { name="heddlr"; version="0.6.0"; sha256="0ixmcgvfbq4hi3wv1fyzpwacmxmixsw5yq6mq5xygk6ji03m1v23"; depends=[rlang utf8 yaml]; }; 10319 10340 hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; ··· 10424 10445 hoa = derive2 { name="hoa"; version="2.1.4.1"; sha256="152vz6cddphmxvm7vi6f3b7jjpib0nsb6qv2k1wrmfrpvv3hgsxx"; depends=[statmod survival]; }; 10425 10446 hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; 10426 10447 hoardr = derive2 { name="hoardr"; version="0.5.2"; sha256="0m6wfs78jpxk2jnlqdbg5x7i993j70bvaxm643qhb8axwbq174c1"; depends=[digest R6 rappdirs]; }; 10427 - hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; }; 10428 10448 hockeystick = derive2 { name="hockeystick"; version="0.6.1"; sha256="17zf1i2qawmgxqvzgfj65c4gs037kn145l1i8f2ql36f417l471w"; depends=[dplyr ggplot2 lubridate patchwork readr rvest scales tibble tidyr]; }; 10429 10449 holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; 10430 10450 holland = derive2 { name="holland"; version="0.1.2-1"; sha256="0f5nr17rmx1m3g4aw6c1f82xdj2ll5nr8slm8ha80cg2i6a90v10"; depends=[MplusAutomation mvtnorm]; }; ··· 10481 10501 htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.4"; sha256="1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs"; depends=[htmltools jsonlite yaml]; }; 10482 10502 htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; 10483 10503 hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; 10484 - htsr = derive2 { name="htsr"; version="1.1.0"; sha256="0dndsdd8k5jfqgq1h9s58iw7ddqw09g9liyc06ahgykx8pfj9lcy"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; 10504 + htsr = derive2 { name="htsr"; version="1.1.2"; sha256="1zwak1cyx5vphshcr207pa5zz2y32zf3j9irmgd8si52m7fxb35h"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; 10485 10505 httk = derive2 { name="httk"; version="2.0.4"; sha256="0akddji209hw82lcvd7k63k4lzcx3jazycw2p1388b36nzm40w79"; depends=[data_table deSolve magrittr msm mvtnorm purrr survey truncnorm]; }; 10486 10506 httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; 10487 10507 httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; ··· 10532 10552 hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.0.1"; sha256="0n2qfw1060szqllvc8vhhv8yy69dhs6m6hh5rnymfhm2wg8994a3"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2]; }; 10533 10553 hyfo = derive2 { name="hyfo"; version="1.4.3"; sha256="012akh96qwafhgjba1gjwy0r14a6shcsk5b7n1hvw230s07zxd8r"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; 10534 10554 hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; 10535 - hyper2 = derive2 { name="hyper2"; version="2.0-0"; sha256="03mgz3b9idwm7m4c2zzyqin8p85pp3yhmaxsxsbkx5li2p66fhwn"; depends=[cubature EMC magrittr mathjaxr partitions Rcpp]; }; 10555 + hyper2 = derive2 { name="hyper2"; version="2.0-1"; sha256="0xvmca46sbyajr2glzss59ahh053cg45cgx98zwzjpkqj5l430wh"; depends=[cubature disordR EMC magrittr mathjaxr partitions Rcpp]; }; 10536 10556 hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; 10537 10557 hyperSpec = derive2 { name="hyperSpec"; version="0.100.0"; sha256="0m0ws6lm5q1555n0qhixj4fqq4bbcf7i7d73pg85z74a3058gk5s"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; 10538 10558 hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; ··· 10714 10734 iml = derive2 { name="iml"; version="0.10.1"; sha256="1wz6xqhvqkzj723nw7qrlwb1171wvvpxhv3pa8cq7vcbkiflq37r"; depends=[checkmate data_table Formula future future_apply ggplot2 keras Metrics prediction R6]; }; 10715 10735 immcp = derive2 { name="immcp"; version="0.9.2"; sha256="07q5dhz12pvy631jxans6q62kzqx9pil3ra72pgqlcxpndvv6f4w"; depends=[Boruta clusterProfiler corrr ggplot2 GSEABase GSVA igraph limma magrittr Matrix pbapply proxyC reshape2 RobustRankAggreg visNetwork]; }; 10716 10736 immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; 10717 - immunarch = derive2 { name="immunarch"; version="0.6.6"; sha256="0f6yrjxspcpz51d1q0b2xc3nhwg64z6h0y74jpshc9i15sxlbjb4"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo magrittr MASS patchwork pheatmap plyr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble UpSetR]; }; 10737 + immunarch = derive2 { name="immunarch"; version="0.6.7"; sha256="1dv983cnjyzwsfn7p174ab6rffpd1h24zy5w78mqapkyr0m95d98"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo jsonlite magrittr MASS patchwork pheatmap plyr purrr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble tidyselect UpSetR]; }; 10718 10738 immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; 10719 10739 imp4p = derive2 { name="imp4p"; version="1.2"; sha256="1ld8bjjrlij9m7xns7izibag9mndrfh21xgq1w7g3bh5ag9p9fs0"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; 10720 10740 impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; ··· 10757 10777 indicspecies = derive2 { name="indicspecies"; version="1.7.9"; sha256="1xza0ha42frz5wizf268j49y3201vpsm4kgj0czsw9wygzjl008f"; depends=[permute]; }; 10758 10778 indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; 10759 10779 indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; }; 10760 - individual = derive2 { name="individual"; version="0.1.6"; sha256="1gsmxjnhhk9npda6gzqiw8l12m33cr3s4nm7szfk0f39z7dl42sh"; depends=[R6 Rcpp testthat]; }; 10780 + individual = derive2 { name="individual"; version="0.1.7"; sha256="0by56qwxdgrb8f1x8d1yv5alf22m375a6gjcr3i31hvzn53ncc6w"; depends=[R6 Rcpp testthat]; }; 10761 10781 industRial = derive2 { name="industRial"; version="0.1.0"; sha256="0zgnykbr71pi3nii178ijmzd8ijwf3g8y8yz6g3jy4c0by7w676s"; depends=[dplyr ggplot2 lattice magrittr rlang SixSigma tidyr]; }; 10762 10782 inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; 10763 10783 ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ··· 10938 10958 isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; 10939 10959 isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; 10940 10960 isotracer = derive2 { name="isotracer"; version="1.0.4"; sha256="1zqn7clqrpy112kvi31f4qpv3y5j07jvngg143dryrn3j2j81yav"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; 10941 - isotree = derive2 { name="isotree"; version="0.3.0"; sha256="0ki7ckfij1ky79bwv1j3418dcyb8j9sj00im972wgqp0kr9qpm89"; depends=[Rcpp]; }; 10961 + isotree = derive2 { name="isotree"; version="0.3.9"; sha256="07jmf23iklcvvh705jy8pv3lqfw9qdrd073bcx8jmakzhga8rxa5"; depends=[Rcpp]; }; 10942 10962 ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; 10943 10963 isqg = derive2 { name="isqg"; version="1.3"; sha256="1988bc5n4b5mgxrfl1774vfgaw7rxm9vlaxnkx26phjzhlr1ix9h"; depends=[BH R6 Rcpp Rdpack]; }; 10944 10964 istacr = derive2 { name="istacr"; version="0.1.3"; sha256="14nhd3v8l827mb1fxfhsxklzxbf4316ijp2qkc99qp7ydmxbk0rd"; depends=[curl jsonlite]; }; ··· 10996 11016 jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; 10997 11017 jcp = derive2 { name="jcp"; version="1.1"; sha256="1b4z1h4ygf39cg870q08ahzi4ccrlrxp6g97y1qiff5pf9xyp1jc"; depends=[]; }; 10998 11018 jds_rmd = derive2 { name="jds.rmd"; version="0.3.0"; sha256="0xrs0xabh0m9ax9praiwj1l7z6mb53q53pqvcgwqw7xld6kkgzh7"; depends=[bookdown rmarkdown]; }; 10999 - jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; }; 11000 11019 jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; 11020 + jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; 11001 11021 jetpack = derive2 { name="jetpack"; version="0.5.0"; sha256="17dixhg5nwv2fhp7gvcc927kfxzj07x288g6ywbba1mphk9j5nam"; depends=[desc docopt remotes renv]; }; 11002 11022 jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; 11003 11023 jfa = derive2 { name="jfa"; version="0.6.0"; sha256="1kcwjdzz31firrdh5kz5h1wyq9faf5k4y3jg5d7gjw0rzzhfw662"; depends=[extraDistr]; }; 11004 11024 jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; 11005 11025 jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; 11006 11026 jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; 11027 + jinjar = derive2 { name="jinjar"; version="0.1.0"; sha256="1far987dcwm0akj61lww1n2p72v5n3gm9qmxgcd1n760rcziq35g"; depends=[checkmate cpp11 fs jsonlite rlang]; }; 11007 11028 jipApprox = derive2 { name="jipApprox"; version="0.1.3"; sha256="1dgawgvkpswv1mxjlqz4ip7vy2856fqvs24hkfl338jgap60grhp"; depends=[sampling]; }; 11008 11029 jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; 11009 11030 jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; ··· 11024 11045 joineRML = derive2 { name="joineRML"; version="0.4.5"; sha256="0rj6ag1qlz1iyia89pkxw8l2aj8msph17g7qkgc3g99v4i9rj2pp"; depends=[cobs doParallel foreach generics ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival tibble]; }; 11025 11046 joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; }; 11026 11047 joinet = derive2 { name="joinet"; version="0.0.10"; sha256="1jjx1rvg2x9zdfdqsjk04hcn7qsf8g7pq8q0x9q83kd8sb1ikjk5"; depends=[cornet glmnet palasso]; }; 11027 - joint_Cox = derive2 { name="joint.Cox"; version="3.14"; sha256="1lc3dmhq2xbhc2vc2dgmww7y4961jvry1im8xvd1nj1m9w2vp0mg"; depends=[survival]; }; 11048 + joint_Cox = derive2 { name="joint.Cox"; version="3.15"; sha256="0g1ypwsnnm3068n7d3whmrlsc4c7banj49af1id7x174ibh20gqd"; depends=[survival]; }; 11028 11049 jointDiag = derive2 { name="jointDiag"; version="0.4"; sha256="18x6rxaxhz9hcp6rfmjlanbfsc5q61p6xcxixnc8ayyxbdq7q6rf"; depends=[]; }; 11029 11050 jointMeanCov = derive2 { name="jointMeanCov"; version="0.1.0"; sha256="1cai5g63n11dirn9fldzkqxcnkxc20ndr9ygrr9rk0s1qz8x63pb"; depends=[glasso]; }; 11030 11051 jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; ··· 11056 11077 jsonlite = derive2 { name="jsonlite"; version="1.7.2"; sha256="1lhzcpz9clwq04i5m6jzkvw9x03pwlqrixv4l9xzchjr8d84nd86"; depends=[]; }; 11057 11078 jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; 11058 11079 jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; 11059 - jsonvalidate = derive2 { name="jsonvalidate"; version="1.1.0"; sha256="1vxklvkva547mzbgi7hll46sfx274c6j4m70algygphz783x3dsx"; depends=[V8]; }; 11080 + jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.1"; sha256="1qp1wb4js0hpdlcp2z6amslm9hvbgbfr7b6jkp67bgcignqz3pf4"; depends=[V8]; }; 11060 11081 jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; 11061 11082 jti = derive2 { name="jti"; version="0.8.0"; sha256="15rx44psz5hbpqzlmwnmqzzdf6488n17mbhyh52wyaaa70gk9ndh"; depends=[igraph Rcpp RcppArmadillo sparta]; }; 11062 11083 jtools = derive2 { name="jtools"; version="2.1.4"; sha256="1zbzhr7bz735b8pvqjxhqnmh3sl12xvpz5fpkmjngvwi4yz5873r"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; ··· 11083 11104 karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; 11084 11105 karel = derive2 { name="karel"; version="0.1.0"; sha256="0ncjzfzm8a6vx2mswvck3j6vnpqhzrjd5gd371xa5cgi0w1figa9"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; 11085 11106 katex = derive2 { name="katex"; version="1.3.0"; sha256="07f381ja2pwgnjz9794zc6cg4qzr16zfm116f4dwjghyfblxs3qa"; depends=[V8]; }; 11086 - kayadata = derive2 { name="kayadata"; version="0.5.1"; sha256="0rpqdbk89q8dmpb5x5kiqwkmq9pbgmg8zs0hi46vlhsy38pbxh7m"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; 11107 + kayadata = derive2 { name="kayadata"; version="1.0.0"; sha256="1zmdwds1p430770426lhwhffissb44x27wqh1vbz7z52ma0h7l91"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; 11087 11108 kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; 11088 11109 kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; 11089 11110 kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; ··· 11227 11248 label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; 11228 11249 labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; 11229 11250 labeling = derive2 { name="labeling"; version="0.4.2"; sha256="0rfikd9gy70b8qz87q9axcwv8nmn9mbxfdwypxi0sghpfs9df8p0"; depends=[]; }; 11230 - labelled = derive2 { name="labelled"; version="2.8.0"; sha256="0fs8fhmk9j2nv2j87mpkmm0clz34f8kybnzn6pzqpcbwk0i2pcwg"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; 11251 + labelled = derive2 { name="labelled"; version="2.9.0"; sha256="0ffnhlr239nqcwb35m4hll21abnnhpmyy5wlxnyahrg0kqb0xb1n"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; 11231 11252 labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; 11232 11253 labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; 11233 11254 labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; ··· 11271 11292 lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; 11272 11293 lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; 11273 11294 latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; 11274 - latentcor = derive2 { name="latentcor"; version="1.1.0"; sha256="1galk0pdmaa6p2h738yzg16g4cvmxnrvyz4ybap66aq4f6a4z8jb"; depends=[chebpol doFuture doRNG fMultivar foreach future ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly rmarkdown]; }; 11295 + latentcor = derive2 { name="latentcor"; version="1.2.0"; sha256="1kqsiaz84cln6l6ajzn2grrc6bch7pfsrr39l2jvkmcnp8n5cimi"; depends=[chebpol fMultivar ggplot2 heatmaply MASS Matrix mnormt pcaPP plotly]; }; 11275 11296 latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; 11276 11297 latentnet = derive2 { name="latentnet"; version="2.10.5"; sha256="05yjf7a16imv1p2lg5dmfk183xll49crnkg0mbz4c4b39nksy85v"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; 11277 11298 later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; ··· 11338 11359 leafdown = derive2 { name="leafdown"; version="1.0.0"; sha256="1zvgbglrb4javazvyph7b48x3qab7kiziiya1a1wccdm9l6qh58w"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; 11339 11360 leafem = derive2 { name="leafem"; version="0.1.6"; sha256="0ml110rva6ca8ycy0mrivq3wsj0dvyi5f62i92948r7mk6kf0l6a"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; 11340 11361 leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; 11341 - leaflegend = derive2 { name="leaflegend"; version="0.4.0"; sha256="1qijjkh2vga6ip77hbkwh3h7z00ypl56b58wb4m3mc949wbx255z"; depends=[base64enc htmltools htmlwidgets leaflet]; }; 11362 + leaflegend = derive2 { name="leaflegend"; version="0.5.0"; sha256="1h4yjw3apzw0gbay6s6cxr7r6bxq8jvm4nfv3csh2qrdqlzsb6h9"; depends=[base64enc htmltools htmlwidgets leaflet]; }; 11342 11363 leaflet = derive2 { name="leaflet"; version="2.0.4.1"; sha256="07whi3zkz1lmbqx5ydpiya802ck22ny0s7gskwnx7r8xbwlkiw5h"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; 11343 11364 leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; 11344 11365 leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; ··· 11379 11400 leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; 11380 11401 leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; 11381 11402 lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; 11382 - lessR = derive2 { name="lessR"; version="4.0.5"; sha256="1f85z3dfaczlzp2ww3bvqcn1zj83v6h2llyyv20znihydr1ln3j2"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase viridisLite]; }; 11403 + lessR = derive2 { name="lessR"; version="4.0.6"; sha256="1qw99fnb1zsvhgcxfjhj8snv7lzwlazpl586x16f9y9y61897vbv"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; 11383 11404 lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; 11384 11405 lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; 11385 11406 letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; ··· 11407 11428 liayson = derive2 { name="liayson"; version="1.0.4"; sha256="0xxl2l24km563n649kxzr15q0f6ks7l5yab3ig229s50i6sbn8nd"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; 11408 11429 libbib = derive2 { name="libbib"; version="1.6.2"; sha256="1d6d4fc9bpj8lkkblqcccdcsf21136vdr38kzy91259z3525gvcg"; depends=[curl data_table pbapply stringr xml2]; }; 11409 11430 libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; 11410 - libgeos = derive2 { name="libgeos"; version="3.9.1-1"; sha256="0bx7cp1n2l1ayf3w2a0hhd12crfxii9c50gzagd9lc840xgdipsn"; depends=[]; }; 11431 + libgeos = derive2 { name="libgeos"; version="3.10.0-1"; sha256="0mvdz8lcmfriiy3rq9nwlrjy8lppfk174ibxnssmjzqmrqr035j4"; depends=[]; }; 11411 11432 libr = derive2 { name="libr"; version="1.2.1"; sha256="0gc799lcwprjj0myn0fyh65lybynn1hl3x04xs7zxq1ijbcs8j9q"; depends=[crayon data_table dplyr haven openxlsx Rcpp readr readxl tibble]; }; 11412 11433 librarian = derive2 { name="librarian"; version="1.8.1"; sha256="0bbgx9pdwcv64p6zdrw3m0893ar4bw6z90vhbgplp53l65cch548"; depends=[BiocManager remotes]; }; 11413 11434 librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; ··· 11424 11445 liftr = derive2 { name="liftr"; version="0.9.2"; sha256="0azi831c4f0vcq27a3q86vj90zvwrzcy4plhj9hqkk4qz8xw113x"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; 11425 11446 lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; 11426 11447 liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; 11427 - lightgbm = derive2 { name="lightgbm"; version="3.3.0"; sha256="1sgimzax84rag02gqv2qag2cg8mmhkv71xydawg7bkxk95dycbc2"; depends=[data_table jsonlite Matrix R6]; }; 11448 + lightgbm = derive2 { name="lightgbm"; version="3.3.1"; sha256="0hvpwirskzcd7ww47f9gllgl3wjvpghnwj8a41glpppwwaaxa0z4"; depends=[data_table jsonlite Matrix R6]; }; 11428 11449 lightr = derive2 { name="lightr"; version="1.6.0"; sha256="1d1xrsra3ng5g9vlsvdgimfyx6kqdazwv8i787qh3nbavxfqjmay"; depends=[future_apply progressr xml2]; }; 11429 11450 lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; 11430 11451 likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; 11431 11452 likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; 11432 11453 likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; 11433 - likelihoodR = derive2 { name="likelihoodR"; version="1.0.5"; sha256="15idzz2wsk55m5g70gcjkhqakx8knicdrsw8h87k7b1zygigds6q"; depends=[]; }; 11454 + likelihoodR = derive2 { name="likelihoodR"; version="1.0.6"; sha256="015g7crpfmzyiy16czknmv6ay3276kznby2y8h65y7mld4vzmcdj"; depends=[]; }; 11434 11455 likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; 11435 11456 lilikoi = derive2 { name="lilikoi"; version="2.0.4"; sha256="037iq4kqn9iwdq70hq1l7w1ak533ba43npnkr6yk6jnl7avf4bma"; depends=[car caret dplyr gbm ggplot2 glmnet h2o impute infotheo limma M3C Metrics MLmetrics pathifier pathview plyr preprocessCore pROC RCy3 reshape reticulate RWeka scales stringr survival survminer]; }; 11436 11457 lillies = derive2 { name="lillies"; version="0.2.9"; sha256="0ljqfl9w26z61fivzlr4sh371s418alzzkdlhghsq0w03871wd3h"; depends=[ddpcr dplyr knitr pracma progress rlang survival tidyr]; }; ··· 11442 11463 linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; 11443 11464 linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; 11444 11465 linbin = derive2 { name="linbin"; version="0.1.3"; sha256="04x97ah45qljpa4kg1iqz85w0q7936n4sq7vbzk2mx5m87p83czh"; depends=[]; }; 11466 + linconGaussR = derive2 { name="linconGaussR"; version="0.1"; sha256="10l7qajqa8f8yq3zbjmjxf0va2krq1rab42ihfhz2jyv3mn24xsi"; depends=[MASS Rcpp RcppArmadillo]; }; 11445 11467 lindia = derive2 { name="lindia"; version="0.9"; sha256="1qma8wr0fkwx03x971crkh8cfc8z4374py1r1wvszj9wzi4vfp5r"; depends=[ggplot2 gridExtra MASS]; }; 11446 11468 linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; 11447 11469 linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; ··· 11450 11472 lineup = derive2 { name="lineup"; version="0.38-3"; sha256="15m90cg700lq1w54adkmld876fpr41nhv1y0vqwbhwwfjgfxj700"; depends=[class qtl]; }; 11451 11473 lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; 11452 11474 lingmatch = derive2 { name="lingmatch"; version="1.0.2"; sha256="1986vi8r105wsd27vzy7wq9w0flgmgigssa3p0j7xmgr4kmjkks4"; depends=[Matrix Rcpp RcppParallel]; }; 11453 - lingtypology = derive2 { name="lingtypology"; version="1.1.6"; sha256="0f5cw3i5j1dzn2liksvzwq0b3y9kii8jbmlr2x3aa3wdgv4fvsx6"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; 11475 + lingtypology = derive2 { name="lingtypology"; version="1.1.7"; sha256="1ykbjzv139vdlpyf2ka59whz1x98ingsj2z09lz4f5f8dasp7fn7"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; 11454 11476 linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; 11455 11477 link2GI = derive2 { name="link2GI"; version="0.4-7"; sha256="0fl7m1r7iaihkym0k65gg2dqr03fra93zjwbddq14lsm1bx1hg7w"; depends=[devtools R_utils raster roxygen2 sf stringr]; }; 11456 11478 linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; ··· 11485 11507 liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; 11486 11508 live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; 11487 11509 livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; 11488 - liver = derive2 { name="liver"; version="1.9"; sha256="1pyv4s4sh4mhgh73g2l604855nvagpw0cqra5gy6zi7wj3zx632q"; depends=[class ggplot2]; }; 11510 + liver = derive2 { name="liver"; version="1.10"; sha256="0mmlaw8xn4fwwwxchi7mlvhcg4z04v6x472478qsmmf3vsbdjg3a"; depends=[class ggplot2]; }; 11489 11511 ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; 11490 11512 llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; 11491 11513 llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; ··· 11554 11576 loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; 11555 11577 loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; 11556 11578 log = derive2 { name="log"; version="1.1.0"; sha256="04cl8qb2ivdili89h4cghcjqywpkz85v48g2vkg6hdlimcd63wff"; depends=[cli crayon R6]; }; 11557 - log4r = derive2 { name="log4r"; version="0.3.2"; sha256="18r5g0817wfn0kmqwv6vf7r2vavi0xh6mqmxrh59y9w3c84npfhl"; depends=[]; }; 11579 + log4r = derive2 { name="log4r"; version="0.4.1"; sha256="0qxzmbrjasa766vgqxn7a2ifnpny7zchvb2b3mi8gkbznxlixyif"; depends=[]; }; 11558 11580 logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; 11559 11581 logNormReg = derive2 { name="logNormReg"; version="0.4-0"; sha256="10b6a7z2mq0vrpg3sy4m5g8xaw3zs5k0zsbngxqmjmln99big9ad"; depends=[]; }; 11560 11582 logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; }; ··· 11574 11596 logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; 11575 11597 logisticRR = derive2 { name="logisticRR"; version="0.3.0"; sha256="0i9x7rynxcybdnjqbjsny8jsl96mivzdazdgmcg72qrv8qfwpszl"; depends=[nnet]; }; 11576 11598 logitnorm = derive2 { name="logitnorm"; version="0.8.38"; sha256="01svs20dr0f1h66j5vn3ychjlgwzak96f8p9lmzd29anjlkm9x9q"; depends=[]; }; 11577 - logitr = derive2 { name="logitr"; version="0.3.0"; sha256="1h956s32sq3sgyaxq3ibpkp0l30fz2qgfqj2g5xc7sia8p0v8bqj"; depends=[MASS nloptr randtoolbox]; }; 11599 + logitr = derive2 { name="logitr"; version="0.4.0"; sha256="0j3p0lkwdj700nfjpkc7n4kf3xjz7ak69q8rziilpiqg7dxf1502"; depends=[MASS nloptr randtoolbox]; }; 11578 11600 loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; 11579 11601 logmult = derive2 { name="logmult"; version="0.7.3"; sha256="10dmvvwlaw8dn6h0343d8apn7rlc2b8nys3f38x9wlvd9xhhlwxm"; depends=[gnm qvcalc]; }; 11580 11602 lognorm = derive2 { name="lognorm"; version="0.1.9"; sha256="0mx7wgqpiprwvh5srf8z9f8glz2kgh8l15b2pydb4bvqx1m54kxa"; depends=[Matrix]; }; ··· 11603 11625 loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; 11604 11626 loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.0"; sha256="0bzsyj1z2abqp8k6mnn8x2sk28g8r55csfwkxy0gm35mclv7qzmv"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; 11605 11627 loon_shiny = derive2 { name="loon.shiny"; version="1.0.1"; sha256="0103n5bvabs8dv9dx8nq4lvf5wi7s3knfdifvr9hhvyb59iqkgaw"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; 11606 - loon_tourr = derive2 { name="loon.tourr"; version="0.1.2"; sha256="1n8abzwkm15kpxs6rnzw5d138595qvhs3i671wn9rn35bp1gxs4k"; depends=[loon loon_ggplot MASS tibble tourr]; }; 11628 + loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; 11607 11629 loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; 11608 11630 loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; }; 11609 11631 lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; ··· 11738 11760 makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; 11739 11761 makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; 11740 11762 makemyprior = derive2 { name="makemyprior"; version="1.0.0"; sha256="0l4xpalw13x07fr1g9h6dfcmb16dk712pp70mnshqjhy1vlq2ajp"; depends=[ggplot2 knitr MASS Matrix rlang rmarkdown shiny shinyBS shinyjs testthat visNetwork]; }; 11763 + makepipe = derive2 { name="makepipe"; version="0.0.4"; sha256="0j4iqwl2qqd4652c985yph9rv8847p6fipj1nrj2iwz77cnhg358"; depends=[cli R6 visNetwork]; }; 11741 11764 maketools = derive2 { name="maketools"; version="1.2.0"; sha256="1i2s48s0qfk9nwkkbx5hr0q7b0c8xziyrsg1klianmk9jqfngg36"; depends=[sys]; }; 11742 11765 malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; 11743 11766 malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; 11744 11767 malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.1"; sha256="0k0406pn65ars4d6zlirfdd7z3rl2z82vsx5p97gmxnjjp6gjdpa"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; 11745 - malaytextr = derive2 { name="malaytextr"; version="0.1.1"; sha256="1ra6grjapmx2yiy50prfxk87vx9p68i8b2ns93y9sj0nh1vdybmw"; depends=[dplyr magrittr rlang stringr]; }; 11768 + malaytextr = derive2 { name="malaytextr"; version="0.1.2"; sha256="0lal9x2syyc2qbzxy35dbmd4jyxxkqpbygg9x7nyh8vw8k7pf0jh"; depends=[dplyr magrittr rlang stringr]; }; 11746 11769 mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; 11747 11770 managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; 11748 11771 mand = derive2 { name="mand"; version="1.0"; sha256="0mjjzrij1yizdyv5z5jsf24xhdck478iwpjx5x4mz0mhxp3nazs3"; depends=[caret imager msma oro_dicom oro_nifti]; }; ··· 11755 11778 manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; 11756 11779 manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; 11757 11780 manymodelr = derive2 { name="manymodelr"; version="0.3.6"; sha256="0a444kn38qsc197f6625ds61c1aww1kwh9dvh3jppabdf691pnv5"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; 11758 - maotai = derive2 { name="maotai"; version="0.2.1"; sha256="1l4379slxshk7hrg2mjrihr2k5cq1rf112m6l9pqsr5aisvjq0ab"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; 11781 + maotai = derive2 { name="maotai"; version="0.2.2"; sha256="10s9fcfn6i0rkfhv8bq452ianjkah6srxa5fc2ymhqzm6m1r5b3j"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; 11759 11782 mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; 11760 11783 mapSpain = derive2 { name="mapSpain"; version="0.4.0"; sha256="043a79q2pc4c6w01pad2zyk3chjkv26vxhlvym30qq6ipdljl0sh"; depends=[countrycode giscoR rappdirs sf]; }; 11761 11784 mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; ··· 11769 11792 mapdeck = derive2 { name="mapdeck"; version="0.3.4"; sha256="0agbf6bs3z7gwx1dj9jqlq6cllq5b65x89lkplm5mwhr20lzwvhr"; depends=[BH colourvalues geojsonsf geometries googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; 11770 11793 mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; 11771 11794 mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; 11772 - mapi = derive2 { name="mapi"; version="1.0.1"; sha256="0qfwxrd0ya5amw7f96pfxf3f8m97s7vhaz62clqn083mw8ddaz2l"; depends=[data_table pbapply Rcpp sf]; }; 11795 + mapi = derive2 { name="mapi"; version="1.0.3"; sha256="0axypjmxr0kg8wqizywdh24n51xbfjdscis5kvs78044kds99sag"; depends=[data_table pbapply Rcpp sf]; }; 11773 11796 mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; 11774 11797 mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; 11775 11798 mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; ··· 11779 11802 mapr = derive2 { name="mapr"; version="0.5.2"; sha256="0qc1zqa2yqgy777wbm6lj37vzaaxaz0gdimr62wv9fyddkbkshk4"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; }; 11780 11803 maps = derive2 { name="maps"; version="3.4.0"; sha256="0ispkx1szgwxhr0zzhdzgqqwcgc6psg7vry4sj4rb89w76rcq63r"; depends=[]; }; 11781 11804 mapsFinland = derive2 { name="mapsFinland"; version="0.1.1"; sha256="0kx9r28lvc6bbl478i9gyy58kbp5hi7akysyld87fxk5x0601j19"; depends=[]; }; 11805 + mapsPERU = derive2 { name="mapsPERU"; version="0.1.3"; sha256="0s3qlvf1cwc4l2g1z6h30cijsnxdyyxiprms0lvs1fxx2kf64f7i"; depends=[tibble]; }; 11782 11806 mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; 11783 11807 mapsapi = derive2 { name="mapsapi"; version="0.5.0"; sha256="0cf9ycj1a0vik0j10nif69n7rirrvkan9md55mgicw4wmcn1rs6i"; depends=[bitops magrittr RgoogleMaps sf stars xml2]; }; 11784 11808 mapsf = derive2 { name="mapsf"; version="0.3.0"; sha256="0kyqzpk14k4qs4vqlzpsbl29wfkspd3c95mqvlzh1a8shw70jfrn"; depends=[classInt Rcpp sf]; }; ··· 11796 11820 marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; 11797 11821 margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; 11798 11822 marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; 11799 - mark = derive2 { name="mark"; version="0.3.0"; sha256="0zv1bm97r1w1b8sylvdgnkvylpl1bs4q53lyv4d8zd08lilw1q97"; depends=[magrittr]; }; 11823 + mark = derive2 { name="mark"; version="0.4.0"; sha256="1jv16pbfbnayah7lrrpdq602wicy0b9iclpnsvb9ixriq2cfhi4b"; depends=[magrittr]; }; 11800 11824 markdown = derive2 { name="markdown"; version="1.1"; sha256="06zwbrp14bri3470anadd7dvgmw06xf8df6v2pk64wx3f9sd934d"; depends=[mime xfun]; }; 11801 11825 markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; 11802 11826 marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; ··· 11971 11995 meditations = derive2 { name="meditations"; version="1.0.1"; sha256="0wnx3zadpngfch0sb0ifqvsmzl613639f1yazwsgvhk29mycx4ss"; depends=[]; }; 11972 11996 medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; }; 11973 11997 medrxivr = derive2 { name="medrxivr"; version="0.0.5"; sha256="19gakl39n2jch84sv35jkk4g2c0k4h3ch3l3hz1w5p94mn2jlgqr"; depends=[bib2df curl data_table dplyr httr jsonlite lubridate progress purrr rlang stringr tibble vroom]; }; 11974 - meerva = derive2 { name="meerva"; version="0.2-1"; sha256="07w52i1kpbcaykg2qywlzx86s5b4441v9qqblj1n6005zrjb9mlg"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; 11998 + meerva = derive2 { name="meerva"; version="0.2-2"; sha256="1q1q6ydn1zwv8vif14qs2zgijhrdrnpx1ibd5afp2lb6yn8qd61i"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; 11975 11999 meetupapi = derive2 { name="meetupapi"; version="0.1.0"; sha256="1iaxpfzgn478np9cjwz0zalfy1p7jwabnwpfv31svw052i8bs9yl"; depends=[dplyr httr magrittr purrr]; }; 11976 12000 mefa = derive2 { name="mefa"; version="3.2-8"; sha256="0agq3vk0dw7i6plz3killybsf8jb57fmlbh5zq1h8lgy1dqry55a"; depends=[]; }; 11977 12001 mefa4 = derive2 { name="mefa4"; version="0.3-8"; sha256="09y8mhmcd82gz582lskvy0yx6vh6jjyxmh7i35041knqcjyp6lpc"; depends=[Matrix]; }; ··· 12058 12082 metapower = derive2 { name="metapower"; version="0.2.2"; sha256="1r6mmdxxi83isjjyfzblwpzfgqdmfhbqmq49zm2b4jd0zvc0lfcx"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang testthat tidyr]; }; 12059 12083 metaprotr = derive2 { name="metaprotr"; version="1.2.2"; sha256="1iz5aqd8ha0h19sa58s7xd4h26lbqp68dxy93pxnx9bj3bv615b3"; depends=[ade4 dendextend dplyr ggforce ggrepel reshape2 stringr tidyverse]; }; 12060 12084 metarep = derive2 { name="metarep"; version="1.0.1"; sha256="0jnxx11jxj63ry0bkjlh9g2x2pr2qi24nql99iibz2ckbx8344p3"; depends=[meta]; }; 12061 - metasens = derive2 { name="metasens"; version="0.6-0"; sha256="05ghc5jajzl540knm0vzvlmp3nl0b0arm09wacxwid800sm2dzga"; depends=[meta]; }; 12085 + metasens = derive2 { name="metasens"; version="1.0-0"; sha256="1f0bjfm8bbmpgi1ng4k7g38hryzv9yyaw8r6rsxzafc31mcwm7vm"; depends=[meta]; }; 12062 12086 metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; 12063 12087 metathis = derive2 { name="metathis"; version="1.1.1"; sha256="0vac4sjlbz1cpdx0yc6q52mj174xay5j81cl5f4z2q9in0jy8f8b"; depends=[htmltools knitr magrittr purrr]; }; 12064 - metavcov = derive2 { name="metavcov"; version="2.1.1"; sha256="1ymna7w29aq539jlnfwm4pzrk6iba6a910d9q0ir944dg94r8vjk"; depends=[ggplot2 mice]; }; 12088 + metavcov = derive2 { name="metavcov"; version="2.1.2"; sha256="1jf4xig6lshf5kda4cj7w72121jp8bq52f4752bl8sxgnfqgfkr5"; depends=[ggplot2]; }; 12065 12089 metaviz = derive2 { name="metaviz"; version="0.3.1"; sha256="0jvv49rw66v7saj2y1q88rp6fyzq7473af5d3k77ymvjbpqyrbyz"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; 12066 12090 metawho = derive2 { name="metawho"; version="0.2.0"; sha256="1mflkrlnb1wk9vbbj621cy64s78q677d8fcnsi1ybh49k7sqmw20"; depends=[dplyr forestmodel magrittr metafor purrr rlang]; }; 12067 12091 meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; ··· 12071 12095 meteoland = derive2 { name="meteoland"; version="0.9.7"; sha256="0m2q451zgvimd3xx3h66c3blzp7r5waj8ddb9p8hg5aj3drq2l8p"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; 12072 12096 meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; 12073 12097 meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; 12098 + meteospain = derive2 { name="meteospain"; version="0.0.2"; sha256="15wmf5w8p7j0bmgmkjsyr6jb9ss941vhvgg2zl5bc3975z4czjyg"; depends=[assertthat crayon dplyr glue httr jsonlite lubridate magrittr purrr rlang sf stringr tidyr units vctrs xml2]; }; 12074 12099 methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; 12075 12100 metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; 12076 12101 metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; ··· 12133 12158 microPop = derive2 { name="microPop"; version="1.5"; sha256="1gikp20n2b50fkybbg2hmlfjdcm0imjwygjsjnyv3wrjzypm2i78"; depends=[deSolve]; }; 12134 12159 microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; }; 12135 12160 microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; 12136 - microbenchmark = derive2 { name="microbenchmark"; version="1.4-7"; sha256="1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6"; depends=[]; }; 12161 + microbenchmark = derive2 { name="microbenchmark"; version="1.4.8"; sha256="0gqkxf31my5dchv81yjnvk9gpziihc4p6dbvw01586xbi16vdbp1"; depends=[]; }; 12137 12162 microbial = derive2 { name="microbial"; version="0.0.19"; sha256="0pf8rdr7fdfalx28hqkfzrgwdia956d3cksz58bbf75hsiay8vak"; depends=[Biostrings broom dada2 DECIPHER DESeq2 dplyr edgeR ggplot2 ggpubr magrittr MASS phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; 12138 12163 microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; 12139 12164 microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; }; ··· 12146 12171 micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; 12147 12172 microplot = derive2 { name="microplot"; version="1.0-44"; sha256="1sx3544yvv5dxpgqw1582574z1vcxh9rc82x1z37ad7ayzxyyb1v"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; 12148 12173 microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; 12149 - microseq = derive2 { name="microseq"; version="2.1.4"; sha256="1cjwcg4mzsn2w3js2vhfjzbjax756xbwngw9fyjn1i4zfl0l8fbz"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; 12174 + microseq = derive2 { name="microseq"; version="2.1.5"; sha256="1asdy0njy5xcykd88jxa8s5hkrh6kab566h3nf9i93yw1i6kmwip"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; 12150 12175 microservices = derive2 { name="microservices"; version="0.1.2"; sha256="18inmqwdb2cz0i0q9rh7mm3bi0hg193kkipbzhgk0bk8i8gkdy84"; depends=[config desc dplyr glue purrr withr]; }; 12151 12176 microsimulation = derive2 { name="microsimulation"; version="1.3.5"; sha256="0fg3b1jq3igv6y76d97wjzwy7gxscbislfiv7kpc694i32hphygz"; depends=[ascii BH Rcpp]; }; 12152 12177 microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; ··· 12156 12181 midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; 12157 12182 midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; 12158 12183 mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; 12159 - migest = derive2 { name="migest"; version="2.0.0"; sha256="05rw0z149pafna8kjms33hk1bggrjhv4x3d4j4c55qih4kjs2m3i"; depends=[dplyr forcats ggplot2 magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; 12160 - migraph = derive2 { name="migraph"; version="0.7.1"; sha256="1r55s4drfc2nvlkmxry5x1nc9iasach4nvqj77pmj2r6hnxqd6dx"; depends=[dplyr ggplot2 ggraph gridExtra httr igraph jsonlite lubridate magrittr network purrr rlang stringr tibble tidygraph tidyr]; }; 12184 + migest = derive2 { name="migest"; version="2.0.1"; sha256="0za96d4zyjvxga3686sar4aff3h5s5wnykbfiqp364qdlvh1bd0v"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; 12185 + migraph = derive2 { name="migraph"; version="0.8.5"; sha256="03sxprzjh32b9q7c5d75vhycvjpw45iwgspn901m773419npw51g"; depends=[concaveman dplyr ggdendro ggforce ggplot2 ggraph gridExtra igraph magrittr network purrr RColorBrewer readxl rlang sna stringr tibble tidygraph tidyr]; }; 12161 12186 migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; 12162 12187 migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; 12163 12188 migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; ··· 12178 12203 miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; 12179 12204 miniMeta = derive2 { name="miniMeta"; version="0.2"; sha256="03r6xwcgchw42irqr8jy5hsbv8brk6f77h4zi9qhhz3zmkryjbw2"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; 12180 12205 miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; 12181 - minidown = derive2 { name="minidown"; version="0.2.0"; sha256="18s7p3fdiichz4jfx9v73ddx6gsbvh8n85v0jmnkmz4pkxx371dr"; depends=[htmltools knitr mime rmarkdown xfun]; }; 12206 + minidown = derive2 { name="minidown"; version="0.3.0"; sha256="1x0xsag8lbghnbgjlwd73m24cpvil75056pl3j2fhhsydbikhifw"; depends=[htmltools knitr mime rmarkdown xfun]; }; 12182 12207 minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; 12183 12208 minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; 12184 12209 minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; ··· 12267 12292 mkin = derive2 { name="mkin"; version="1.0.5"; sha256="1nxdzll5v8551sgq0whqs2270lzvw923rl0kxvxbcwnsz27z26da"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; 12268 12293 mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; 12269 12294 mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; 12270 - mlVAR = derive2 { name="mlVAR"; version="0.4.4"; sha256="0ib566qygm28lqhr3w9vzfxnpsmazlipzrfsdm3cw21wpz2lvxcr"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; 12295 + mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; 12271 12296 mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; 12272 12297 mlbench = derive2 { name="mlbench"; version="2.1-3"; sha256="157iqsld0wj8g8cbs7nh6p2x6kasmkhs3078hsmqac946gk2pydi"; depends=[]; }; 12273 12298 mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; ··· 12309 12334 mlr3misc = derive2 { name="mlr3misc"; version="0.9.4"; sha256="14lcpvxrrl68l3khmy5r266b7yjjlg97pz4xvha0ypx8hlpbqik2"; depends=[backports checkmate data_table digest R6]; }; 12310 12335 mlr3oml = derive2 { name="mlr3oml"; version="0.5.0"; sha256="1w4hjzzmy968mzgyg6ybcpq09n9zkhiwi2ccm41rvwaysl27rgfd"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; 12311 12336 mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.3.6-1"; sha256="00v39y50krmjbmk63j7kc8zgdkwi2m4l6r7j5913ghiy9f9394wc"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; 12312 - mlr3proba = derive2 { name="mlr3proba"; version="0.4.1"; sha256="1pq6ihbyz4czgykrdb0bss6h88dpprjc07xdgizrjhx7lpi61vm8"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; 12337 + mlr3proba = derive2 { name="mlr3proba"; version="0.4.2"; sha256="01k49spc52i8bnwi61b1knw0xnll4hgd489pswfdm7367yskhb2r"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; 12313 12338 mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; 12314 12339 mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.0"; sha256="0y04w96xk3m786aamqv9p91gqqyi19dc0shgkwlba32lkd5rqj0w"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; 12315 12340 mlr3tuning = derive2 { name="mlr3tuning"; version="0.9.0"; sha256="0i428kdbak81j1wlwmdf9y40hqi63azhyny802ms2z04wl8lwnvs"; depends=[bbotk checkmate data_table digest lgr mlr3 mlr3misc paradox R6]; }; ··· 12326 12351 mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; 12327 12352 mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; 12328 12353 mlxR = derive2 { name="mlxR"; version="4.2.0"; sha256="0pr564376q7pn0wbbw5q9mjfzdc0bpq1g4xj0bcdmb64binqllvb"; depends=[ggplot2]; }; 12329 - mma = derive2 { name="mma"; version="10.5-0"; sha256="1n4p67s8vyaz3vj8f24lccg2mr4lmbqka6aj862bnzai9vljrjvq"; depends=[car gbm gplots lattice plotrix survival]; }; 12354 + mma = derive2 { name="mma"; version="10.5-1"; sha256="0frkx85f2wxp2a7hlmgjw4zs2ryl7lk2ihlb5bby6qchza8i6hgy"; depends=[car gbm gplots lattice survival]; }; 12330 12355 mmabig = derive2 { name="mmabig"; version="3.0-0"; sha256="032xphcrcwp9n3i8rcn4ipvvjmgh9qwmkdml40rx9fhg43qr31n1"; depends=[car glmnet gplots mma survival]; }; 12331 12356 mmand = derive2 { name="mmand"; version="1.6.1"; sha256="19s6v083iry95akhc2ccj617sjcddalb6dp87j3lqjlgybxws62q"; depends=[Rcpp]; }; 12332 12357 mmap = derive2 { name="mmap"; version="0.6-19"; sha256="0s3vlwdcwifl2a2byr0f2cc4vmbdparc55x889a3h115ga7k91w2"; depends=[]; }; ··· 12434 12459 monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; 12435 12460 monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; 12436 12461 monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; 12437 - monobin = derive2 { name="monobin"; version="0.1.1"; sha256="139mlfiaf64g2arsh3b4zivppxgrk38i7iyw1qli1zc1rdqhfrf4"; depends=[dplyr Hmisc]; }; 12462 + monobin = derive2 { name="monobin"; version="0.2.0"; sha256="1ajxh0p685p143y2wjg2gp35dvxbyq6921x3kz3znl0c1x4z6hgs"; depends=[dplyr Hmisc]; }; 12438 12463 monobinShiny = derive2 { name="monobinShiny"; version="0.0.9"; sha256="0cd54zqj4y8ii2m5jhn5fz77zylfds030rhf709wlmgj96s0i750"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; 12439 12464 monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; 12440 12465 monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; ··· 12448 12473 mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; 12449 12474 moreparty = derive2 { name="moreparty"; version="0.2.1"; sha256="0p30skq5x3rz3xbp2izq44v5c0byw7cw2han6bardah7xniz3w2d"; depends=[foreach ggplot2 iml MASS measures party partykit pdp plyr rlang varImp vip]; }; 12450 12475 morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; 12451 - morphemepiece = derive2 { name="morphemepiece"; version="1.0.1"; sha256="1cja9lqzf90ixgr8b2j3mpgyxhynkcxmm8wl8kniifd2vp7ganbd"; depends=[dlr magrittr morphemepiece_data piecemaker purrr rlang stringr]; }; 12452 - morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.0.0"; sha256="1dnjav7s23ang120csjy2qkjzhplvgcnmfii7xk8viklsv27cgcl"; depends=[]; }; 12476 + morphemepiece = derive2 { name="morphemepiece"; version="1.1.0"; sha256="0mqi80b3j5v0ybi6j2kwc6gfm1b9sc06x81m52lmlf0wrxw2np0f"; depends=[dlr magrittr morphemepiece_data piecemaker purrr readr rlang stringr]; }; 12477 + morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.1.0"; sha256="1mc2isjv4zfsks6y46mnfqhm37p13rnhddzx1kwkp2jllhq0d3f9"; depends=[]; }; 12453 12478 morpheus = derive2 { name="morpheus"; version="1.0-1"; sha256="1zfx24ndlky0b6vg6an9vcjw955ms749dwb51x9gsj2m8vgrbpnn"; depends=[jointDiag MASS pracma]; }; 12454 12479 morphomap = derive2 { name="morphomap"; version="1.3"; sha256="12jqrabx8vgkrfwcv4845jbf79ibg5iqzzzr4x4vybb4b2p2wd2i"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce raster rgdal rgl Rvcg sp]; }; 12455 12480 morse = derive2 { name="morse"; version="3.3.1"; sha256="0p7a5p31i0lw0y84nk3ar2211rvlj5y96qq2lmmrrab17pcikg24"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; ··· 12503 12528 mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; 12504 12529 mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; 12505 12530 mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; 12506 - mrbin = derive2 { name="mrbin"; version="1.6.0"; sha256="19xb5assji5zlv93s2iig7nz5df47bmp5jc5iwg24z2sw367qjwl"; depends=[]; }; 12531 + mrbin = derive2 { name="mrbin"; version="1.6.1"; sha256="09rqvd9qakn2868f2l6f50gg0y8vwpp2pgkwp006jnk06bylrdfh"; depends=[]; }; 12507 12532 mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; 12508 12533 mrds = derive2 { name="mrds"; version="2.2.5"; sha256="1659nzdykl4mgfgyniwnwrn1a0m6wiz7c02ygwpm90bnz8f4g5y2"; depends=[mgcv numDeriv optimx Rsolnp]; }; 12509 12534 mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; ··· 12608 12633 multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; 12609 12634 multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; 12610 12635 multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; 12611 - multid = derive2 { name="multid"; version="0.1.0"; sha256="07nj420vfgk7whr9gvbb3cr4hy92cfwzbb9g63n5chw2wbf358d2"; depends=[dplyr glmnet]; }; 12636 + multid = derive2 { name="multid"; version="0.2.0"; sha256="1vkrrnj9dmgljxxy975pdisf8lwnn1bsfz5835pji2ivnrj0y66s"; depends=[dplyr glmnet pROC]; }; 12612 12637 multidplyr = derive2 { name="multidplyr"; version="0.1.0"; sha256="1a0ird0v7i09wd734i6cs31p14ixhrnv282br2k2q5akkpcxgfny"; depends=[callr crayon dplyr magrittr qs R6 rlang tibble vctrs]; }; 12613 12638 multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; 12614 12639 multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; ··· 12633 12658 multinomineq = derive2 { name="multinomineq"; version="0.2.1"; sha256="09h5nccfcrnl78rdxwsw5cqirfq40a6x4dmpkibc475z3xndk2rm"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; 12634 12659 multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; 12635 12660 multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; 12661 + multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; 12636 12662 multiplex = derive2 { name="multiplex"; version="2.9.6"; sha256="0dy34ijdk83gjmmwjwkdzpr0wzrcg4xpw5s08jv59af1asyrr3n7"; depends=[]; }; 12637 12663 multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; 12638 12664 multirich = derive2 { name="multirich"; version="2.1.3"; sha256="1vv4jhhq46wp6znfv9c47q9z4smn1c560wnbp77qfhiix098wzfj"; depends=[]; }; ··· 12666 12692 mutSignatures = derive2 { name="mutSignatures"; version="2.1.1"; sha256="0skw92633mwckkkgkncfv09wvnr910nf4wdbqz0a61cl7mxlsr25"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; 12667 12693 mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; 12668 12694 mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; 12669 - mutualinf = derive2 { name="mutualinf"; version="1.1.1"; sha256="07wlmdjn2q4g7dy2kz8mabkm8i9l18k4k2qxwm38q54436aacczc"; depends=[data_table]; }; 12695 + mutualinf = derive2 { name="mutualinf"; version="1.1.2"; sha256="01l3xvq1k5amw4cncni7fcl1v5x8fgwm0cn6mgc10kpwibadyh6d"; depends=[data_table runner]; }; 12670 12696 mvGPS = derive2 { name="mvGPS"; version="1.2.1"; sha256="0xbawr5fgqc5z7kz97smq1p3icvr9gjkwgb07nkqwri1isgk5rr4"; depends=[CBPS cobalt gbm geometry MASS matrixNormal Rdpack sp WeightIt]; }; 12671 12697 mvLSW = derive2 { name="mvLSW"; version="1.2.4"; sha256="04x0b8b7r4lmpmxvjckbvixd34nxjmj13in1gwdhf6gzn2k7p830"; depends=[fields wavethresh xts zoo]; }; 12672 12698 mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; ··· 12706 12732 mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; 12707 12733 mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; 12708 12734 mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; 12709 - mwaved = derive2 { name="mwaved"; version="1.1.7"; sha256="0g0yddsgdfyvqaj59qi6k3sknpbppdmgvq0rgnil5q8ki5skvgis"; depends=[Rcpp shiny]; }; 12735 + mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; }; 12710 12736 mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; 12711 12737 mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; 12712 12738 mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; ··· 12781 12807 ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; 12782 12808 ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; 12783 12809 ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; 12784 - ndtv = derive2 { name="ndtv"; version="0.13.1"; sha256="18d51xp62fis63p2prybhigxx03yhbrzs0k1yhh9j21548wzhb2l"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; 12785 12810 nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; }; 12786 12811 neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; 12787 12812 neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; ··· 12806 12831 nestr = derive2 { name="nestr"; version="0.1.1"; sha256="1azk3rjr9kkdqw1z5v49gmwd7i31jdmx332jpdnys6vwqci52zk0"; depends=[magrittr rlang tidyselect vctrs]; }; 12807 12832 net4pg = derive2 { name="net4pg"; version="0.1.0"; sha256="0aqagzrycgm6qnappbgi6pin10gnf9h3gj39wnncdsb2nf417ynr"; depends=[data_table graph magrittr Matrix]; }; 12808 12833 netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; 12809 - netCoin = derive2 { name="netCoin"; version="1.2.21"; sha256="15f75994z25c25kh6888b6nz2pcf3yg76f0iscz8bgp2jwcm7ym2"; depends=[haven igraph Matrix]; }; 12834 + netCoin = derive2 { name="netCoin"; version="2.0.20"; sha256="1kmv8sfzyh7cgp4s86rw4znjqpckgw8xiqs6a144g7k2vlfm28fk"; depends=[haven igraph Matrix rD3plot]; }; 12810 12835 netSEM = derive2 { name="netSEM"; version="0.5.1"; sha256="0k4ngl4p1v2rp1sf2x65m7p0cd6ha98fyx21b73ki0531q0d9fil"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; 12811 12836 netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; 12812 12837 netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; ··· 12818 12843 netgwas = derive2 { name="netgwas"; version="1.13"; sha256="156axkl61z0s3zm8plkcc3s46x0881mqnk94azl3p0nphblhmhcv"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; 12819 12844 netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; 12820 12845 netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; 12821 - netmeta = derive2 { name="netmeta"; version="2.0-0"; sha256="13fk5yj8fl9lwi871krkdgryr9jqbawvaffyhgrwbr89pjgvpzjs"; depends=[ggplot2 magic MASS meta metafor]; }; 12846 + netmeta = derive2 { name="netmeta"; version="2.0-1"; sha256="0yssxp42l2krrkb7cna7rgk80mzhl8lcmkn1r3i5ymckgnj8y9pz"; depends=[ggplot2 magic MASS meta metafor]; }; 12822 12847 netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; 12823 12848 netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; 12824 12849 netrankr = derive2 { name="netrankr"; version="1.1.0"; sha256="0l0c843gsckd2kdk3vgvlx6mzw6g8nspijywv9h032ggdwzbag6n"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; ··· 12862 12887 nflfastR = derive2 { name="nflfastR"; version="4.3.0"; sha256="1vg27m51q01m6rypaksr5dw7qg3i638dypm31v5gimbdkjmgs2j7"; depends=[cli curl dplyr fastrmodels furrr future glue janitor lifecycle mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; 12863 12888 nflreadr = derive2 { name="nflreadr"; version="1.1.1"; sha256="0icwsyk675s5ckgwrl73v4d1y0n43fgsmaibhkmvv7b6ric9n5b0"; depends=[cachem curl data_table memoise qs rappdirs Rcpp RcppParallel rlang]; }; 12864 12889 nflseedR = derive2 { name="nflseedR"; version="1.0.2"; sha256="061jd3mr06mxs5riwlph3a1hsk5jypws71jy9jzhhqnijdy96bki"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr progressr purrr readr rlang tibble tidyr]; }; 12865 - ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; }; 12890 + ngram = derive2 { name="ngram"; version="3.2.0"; sha256="1g57md4s73qpxzqxr8sgzvbkx3y4zmw4hfq6zsysnw4h2dbqxm1l"; depends=[]; }; 12866 12891 ngramr = derive2 { name="ngramr"; version="1.7.4"; sha256="11v7vl55bfh9fqdkggpxykglyjqdcnl53if0vki8al67qfwsh9i7"; depends=[cli dplyr ggplot2 httr lifecycle RCurl rjson rlang scales stringr textutils tibble tidyr xml2]; }; 12867 12892 ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; 12868 12893 ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; ··· 12886 12911 nimble = derive2 { name="nimble"; version="0.12.1"; sha256="1n37g22wj5zlvb8lgxh9gi7mk011lyrmg3kaibhcpj2858hz681m"; depends=[coda igraph R6]; }; 12887 12912 nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; 12888 12913 nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.0"; sha256="1qpwjzxgcmfqfp2ccjkngvjymqsyxvhvcs43vvynx30xgrj3nzdm"; depends=[nimble]; }; 12889 - nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.2"; sha256="0212aj3d760dnb04xlwh3zsf1mkv58lmlql8zp7mm7sgx12qg8yh"; depends=[nimble]; }; 12914 + nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.3"; sha256="1859qai1cyh82cxa8kccrn36flw045j4dggzixi2m3k029gvjh15"; depends=[nimble]; }; 12890 12915 nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.0"; sha256="15abjhgq8mi8c079hfzwjyl5glchx606hciq2lsirkrbyvc7b23n"; depends=[nimble]; }; 12891 12916 nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; 12892 12917 nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; ··· 12945 12970 nnfor = derive2 { name="nnfor"; version="0.9.6"; sha256="0bciy6k79g7abvj3pmmdc4wzg5mp11zgmdbx17x4by993p2clhw9"; depends=[forecast glmnet MASS neuralnet plotrix tsutils uroot]; }; 12946 12971 nngeo = derive2 { name="nngeo"; version="0.4.4"; sha256="0k189ih47n20g70y6sxff8dyjlyv09pc03ynwhm1d7pr3l8hxin4"; depends=[data_table lwgeom nabor s2 sf units]; }; 12947 12972 nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; 12948 - nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.1.7"; sha256="18lrbmxbazrwr50s0ci2zp3y8g50gwhlp1c7y0iz2vxc5f2j4m88"; depends=[Rcpp]; }; 12973 + nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.1.8"; sha256="0bwf96q4hb54my57bb540a8brpiqmrk0f6mms2bv9ci1624x0k80"; depends=[Rcpp]; }; 12949 12974 nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; 12950 12975 nnspat = derive2 { name="nnspat"; version="0.1.0"; sha256="01c0spr3i76n1ffhpp5qigmcbsqbscv6hzrrn3kgz0v5wr7j6ss2"; depends=[MASS Rdpack]; }; 12951 12976 nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; ··· 12953 12978 noaaoceans = derive2 { name="noaaoceans"; version="0.3.0"; sha256="0pxsddzkrprzjch173shhmd7c2h6rh5xzs3n5bbs97l51ni8m60m"; depends=[httr jsonlite rvest xml2]; }; 12954 12979 noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; 12955 12980 noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; 12956 - noctua = derive2 { name="noctua"; version="2.2.0"; sha256="0150i8rh4aw9bj6s5ysj7jg162fawi6zyq5kgj1lbnifmlk2nbz4"; depends=[data_table DBI paws uuid]; }; 12981 + noctua = derive2 { name="noctua"; version="2.3.0"; sha256="1py32s0qjya3rb6znx8vrlvc8bpqijchcc6dbyr53w8xfikiyd4i"; depends=[data_table DBI paws uuid]; }; 12957 12982 nodbi = derive2 { name="nodbi"; version="0.4.3"; sha256="03vb11iryhx18jdj4sbmh50l9h39pkzdp9d33117pbfvr61pzx32"; depends=[data_table jsonlite]; }; 12958 12983 node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; 12959 12984 nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; ··· 12965 12990 noisyCE2 = derive2 { name="noisyCE2"; version="1.1.0"; sha256="02zkkyys9qknwm39gz4j4pvlvkd5qlvxqaprklzsd40dgz39cwq4"; depends=[magrittr]; }; 12966 12991 noisySBM = derive2 { name="noisySBM"; version="0.1.4"; sha256="1zdkxr48kvpqs49figxxznq3d45nalja92lyal71m066s1blc6dg"; depends=[ggplot2 gtools RColorBrewer]; }; 12967 12992 noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; 12968 - nombre = derive2 { name="nombre"; version="0.3.0"; sha256="0ssi0xk3f327zs7zvyhcm20v537y6ikjnfjarjsz22dvn05dblma"; depends=[fracture pkgconfig]; }; 12993 + nombre = derive2 { name="nombre"; version="0.4.0"; sha256="0bc66vc8xxg8q2x7nh4si04qgb2gxzl61jf4k10vc6v8dsglk77k"; depends=[fracture]; }; 12969 12994 nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; 12970 - nominatimlite = derive2 { name="nominatimlite"; version="0.1.2"; sha256="1gczpbv6wx27zcgafnjcripyyix4faprak0qb90805kb7wzcjajc"; depends=[dplyr jsonlite sf tibble]; }; 12995 + nominatimlite = derive2 { name="nominatimlite"; version="0.1.4"; sha256="0kcmhfvslvffm7scv8na8z9l9jyzayy7bwgbzgjyqk21b9rcigc2"; depends=[dplyr jsonlite sf tibble]; }; 12971 12996 nomisr = derive2 { name="nomisr"; version="0.4.4"; sha256="1qa7k4fh7n2imf91nfcdg32dacraay343jv9sczs6qc37nadhdbg"; depends=[dplyr httr jsonlite readr rlang rsdmx snakecase tibble]; }; 12972 12997 nomnoml = derive2 { name="nomnoml"; version="0.2.3"; sha256="08zraip0v4jc51zv2zsvka6k8d1ry2ac9d70xpavfggbgmrmz987"; depends=[htmlwidgets lifecycle png rlang webshot]; }; 12973 12998 nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; ··· 13057 13082 nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; }; 13058 13083 nse = derive2 { name="nse"; version="1.20"; sha256="037z164m78hdbwgnaa10jq50ngg3n9iigmyd1r5gz6hgvsr5sbnf"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; 13059 13084 nse2r = derive2 { name="nse2r"; version="0.1.5"; sha256="1gwq8x3sn2f4p3yivmg2dljpdjcwsy2s6467pnwlcjdmr3sqgv2b"; depends=[httr jsonlite magrittr rvest xml2]; }; 13060 - nser = derive2 { name="nser"; version="1.3.3"; sha256="0l34z4arpwabgsc4qqxal19vqxdiwj94d3nb31milqk9jrs27kms"; depends=[dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; 13085 + nser = derive2 { name="nser"; version="1.3.4"; sha256="11pkabv3m4592l480mxkw91z58c91yi0n19yq5si0hv8rxgs592v"; depends=[dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; 13061 13086 nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; }; 13062 13087 nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; 13063 13088 nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; ··· 13101 13126 obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; 13102 13127 observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; 13103 13128 occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; 13104 - occCite = derive2 { name="occCite"; version="0.5.0"; sha256="09y1vqjshrh8mbw1xsmcfrcxy5ccx14gf6p5mfzlwm3ywsi84hcc"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; 13105 13129 occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; 13106 13130 ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; 13107 13131 oce = derive2 { name="oce"; version="1.4-0"; sha256="0224fgd51fchn8apdi6x0n3ycl6zdbwch9janmidqr0i01418d1v"; depends=[gsw Rcpp sf testthat]; }; ··· 13183 13207 oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; 13184 13208 oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; 13185 13209 ooplah = derive2 { name="ooplah"; version="0.1.0"; sha256="0hrbpidcrnvm14qdjhcz4j4im1caydxkj4k9zmqs7dq3wv10rgr9"; depends=[R6]; }; 13186 - opalr = derive2 { name="opalr"; version="3.0.1"; sha256="0vrwr749alj181hhb8n4474hdhzmpgh8q2ivx0bbllg73jx2myxg"; depends=[httr jsonlite labelled mime progress]; }; 13210 + opGMMassessment = derive2 { name="opGMMassessment"; version="0.2.0"; sha256="0mhqv8vqjnnjmn4ayykmvwkwh1k9y3xacna814c61jl14kg8jx0v"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; 13211 + opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; 13187 13212 opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.7.0"; sha256="0vk99psbbks136h3md73g7w3rwlx3mgkx2lahmv536kf8v4fj2bp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; 13188 13213 openCR = derive2 { name="openCR"; version="2.1.0"; sha256="1399kmvxhb4rhhdv8ishi1bwsjma1fflz5hpl9qjqpvirr1aazb2"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; 13189 13214 openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; ··· 13194 13219 openSkies = derive2 { name="openSkies"; version="1.1.5"; sha256="00lnd3xwryh8z2r4hl0xlr6mi57vnggrz3yqldvi9v7br8i54kjm"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; 13195 13220 openVA = derive2 { name="openVA"; version="1.0.13"; sha256="1hps67qlimhrjk3ymmr0jgqac8z6vilqgrchqp6z7vydqirfyp5l"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; 13196 13221 openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; 13197 - openair = derive2 { name="openair"; version="2.8-4"; sha256="0gh0vs8g8l03d3yyx4h7k12km7m9yn76369ydq0iq24g5wjjw89k"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; 13222 + openair = derive2 { name="openair"; version="2.8-5"; sha256="19d51pnxsy474vgzk6353ylpmdfaaw0262yp5wyad1snchbagwk9"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; 13198 13223 openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; 13199 13224 opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; 13200 13225 opencpu = derive2 { name="opencpu"; version="2.2.5"; sha256="1qlwx8iq30qfy2sh0v31pxg955bj4zs0r7v8yklbdwb3qw7kv30g"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; ··· 13305 13330 oskeyring = derive2 { name="oskeyring"; version="0.1.1"; sha256="04i5nbgwwwsi0g94kyyhh29jsfn9jzjn6ihpj0ah8vj6yama152b"; depends=[]; }; 13306 13331 osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; 13307 13332 osmdata = derive2 { name="osmdata"; version="0.1.8"; sha256="0cypc9ibqhg4yghyq6l9nv3j90ajy1ri7dlsc92bhpc5b7im107n"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp tibble xml2]; }; 13308 - osmextract = derive2 { name="osmextract"; version="0.3.1"; sha256="0b4488nphzjv8sp2y19sn930zfsd7lxqqnpzg612m39bzz84vcbr"; depends=[sf]; }; 13333 + osmextract = derive2 { name="osmextract"; version="0.4.0"; sha256="027mwp909xa2i32ibgig6kqazwy8kqyyqyjiyaqhpajm17kfb011"; depends=[httr jsonlite sf]; }; 13309 13334 osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; }; 13310 13335 osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; }; 13311 13336 osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; ··· 13327 13352 outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; 13328 13353 outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; 13329 13354 outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; 13330 - outliertree = derive2 { name="outliertree"; version="1.7.6"; sha256="1634wm2diawsppb8j3sfcnnp44ik5npmcx0lrd343a9c89xb7z98"; depends=[Rcereal Rcpp]; }; 13355 + outliertree = derive2 { name="outliertree"; version="1.7.6-1"; sha256="0hb44l5rr2acpv1szfrmj4gxh1zj25gw6zjvymh2vgk4i9aa20im"; depends=[Rcereal Rcpp]; }; 13331 13356 outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; 13332 13357 outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; }; 13333 13358 outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; }; ··· 13360 13385 pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; 13361 13386 pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; 13362 13387 pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; 13363 - pRecipe = derive2 { name="pRecipe"; version="0.1.0"; sha256="0lsycd7p2cg8p16x1426iwd1n97dpiizq2ggl7x4fl4q6gvazywr"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; 13388 + pRecipe = derive2 { name="pRecipe"; version="0.1.1"; sha256="05lhviyzsrfh1f7jfp77i9xk5nnj4k3kgynw8brxmkyjnr68rayf"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate maps ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; 13364 13389 pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; 13365 13390 pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; 13366 13391 pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; ··· 13485 13510 partitionComparison = derive2 { name="partitionComparison"; version="0.2.5"; sha256="0wzg2r4c61fd3cp8kwsc313gwcizh5aavw361lc9gqn57p1kml1j"; depends=[lpSolve Rdpack]; }; 13486 13511 partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; 13487 13512 partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; 13488 - partitions = derive2 { name="partitions"; version="1.10-2"; sha256="1bckdl6alqi6y7ri3qr2pz9zzqgs167c73bhnwbq4jk0mpxwbgg6"; depends=[gmp mathjaxr polynom sets]; }; 13513 + partitions = derive2 { name="partitions"; version="1.10-4"; sha256="1ik7cj2yfybx4v847nvnjrbkd0k66pfqqv6lkygfnlrldi0r205i"; depends=[gmp mathjaxr polynom sets]; }; 13489 13514 partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; 13490 13515 partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; 13491 13516 party = derive2 { name="party"; version="1.3-9"; sha256="12ch2q5my2r5l84zdndr3w0y50wa4r8snj2xpxg2hsb3p3yzx899"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; ··· 13527 13552 paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; 13528 13553 paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; 13529 13554 paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.12"; sha256="0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42"; depends=[paws_common]; }; 13530 - paws_common = derive2 { name="paws.common"; version="0.3.13"; sha256="15sj7yw4hj76minr00xhgzkg1rwb7gsr2ib9q4d053i5f3jcy54a"; depends=[base64enc digest httr jsonlite xml2]; }; 13555 + paws_common = derive2 { name="paws.common"; version="0.3.14"; sha256="013yiki3bjx0np577wy17ikfxdr2hiv6sd10anv281r108kldm1x"; depends=[base64enc digest httr jsonlite xml2]; }; 13531 13556 paws_compute = derive2 { name="paws.compute"; version="0.1.12"; sha256="1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky"; depends=[paws_common]; }; 13532 13557 paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; 13533 13558 paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; ··· 13547 13572 pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; }; 13548 13573 pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; }; 13549 13574 pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-1"; sha256="1iwc5iw6q7r6p08yngczqlbqk779nsx2rmxc3fajzl6d73rprshl"; depends=[pbdMPI rlecuyer]; }; 13550 - pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-5"; sha256="1v8iv1pzs4j3ics9k9h4xjkv6z1ma2xbqy003xk2lqax6srqi02d"; depends=[]; }; 13575 + pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-6"; sha256="0yy3x3l04vx13jbjbvkvsc8jdbf0abndjfknszdx3bi18b2chi4r"; depends=[]; }; 13551 13576 pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; 13552 13577 pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; 13553 13578 pbkrtest = derive2 { name="pbkrtest"; version="0.5.1"; sha256="1if7msv9i7jhg1as1f7m81a95dnwhwj3yfs24bqr0f6r0ch4b8xj"; depends=[broom dplyr knitr lme4 magrittr MASS Matrix numDeriv]; }; ··· 13562 13587 pcSteiner = derive2 { name="pcSteiner"; version="1.0.0"; sha256="14rw7xb6n46ddiyara4i0296p4c16bljrj0j7g3rlnspb95vzvwr"; depends=[igraph]; }; 13563 13588 pca3d = derive2 { name="pca3d"; version="0.10.2"; sha256="0xpln78zdh6q7xff6pj2jaq2kafrijmlikmpnsfar2fzgkaw7jx6"; depends=[ellipse rgl]; }; 13564 13589 pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; 13565 - pcaL1 = derive2 { name="pcaL1"; version="1.5.4"; sha256="1myl12537bxwmyicm8v891rflq8g6bhz9j0gcjcqgf9z80y52ayc"; depends=[]; }; 13590 + pcaL1 = derive2 { name="pcaL1"; version="1.5.5"; sha256="1m7lnry6pibmsicqlny1kzv2lhv3bi92x3abwf892praskhjlgzk"; depends=[]; }; 13566 13591 pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; 13567 13592 pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; 13568 13593 pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; ··· 13584 13609 pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; 13585 13610 pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; 13586 13611 pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; 13587 - pct = derive2 { name="pct"; version="0.9.1"; sha256="0chqvaa8cfv3s3zf940hzca90967raakxndyxcg08acysvfq6fir"; depends=[boot readr sf stplanr]; }; 13588 13612 pcts = derive2 { name="pcts"; version="0.15"; sha256="1wl3hgj0sn9128vwcqin37jn5ww3na4g7r1isj39j6m2v76s3ndk"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; 13589 13613 pdR = derive2 { name="pdR"; version="1.7"; sha256="05rnyb9znb71ilr9kf62x30knby1rm0p4ain220wvb62vkz054d7"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; 13590 13614 pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; ··· 13620 13644 pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; 13621 13645 pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; 13622 13646 pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; 13623 - pedmut = derive2 { name="pedmut"; version="0.2.0"; sha256="0851r4yl5n1mf8pk3nik5kcnv12ffxc1hl1wxp6b81qz5lbfwxaf"; depends=[]; }; 13647 + pedmod = derive2 { name="pedmod"; version="0.1.0"; sha256="1gkln7z1dbyhl44r2mp5s4sk8az0yyzpwqq8sa9z6pa3zhw55gf7"; depends=[BH Rcpp RcppArmadillo testthat]; }; 13648 + pedmut = derive2 { name="pedmut"; version="0.3.0"; sha256="0w42jhgrkf5f1baz2jb94fyccm0wx94vg0g1px4p39jvpknz9d6a"; depends=[]; }; 13624 13649 pedprobr = derive2 { name="pedprobr"; version="0.5.0"; sha256="1hl2v98rfj71ggz75p8yfjhds12g88mgp9hzckk16ykdyggrrc7v"; depends=[pedmut pedtools]; }; 13625 13650 pedquant = derive2 { name="pedquant"; version="0.1.7"; sha256="0hy6dz00bgfncndkqhz2ikrmcn08s86cqcyjaj7cnpivlpwvph4i"; depends=[curl data_table ggplot2 gridExtra httr jsonlite plotly readr readxl rvest scales stringi TTR xml2 zoo]; }; 13626 13651 pedsuite = derive2 { name="pedsuite"; version="1.0.4"; sha256="0cg19aln0j9grjh53yckyvzspsclqcrzm0ch2b0854bjbnrzmxz1"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr]; }; ··· 13657 13682 performance = derive2 { name="performance"; version="0.8.0"; sha256="1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2"; depends=[bayestestR datawizard insight]; }; 13658 13683 performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; 13659 13684 pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; 13660 - periscope = derive2 { name="periscope"; version="0.6.3"; sha256="0iq0pklipli54bdgl8wl0mnm7a6ik90j0gwqks237phly23njwal"; depends=[DT ggplot2 lubridate shiny shinyBS shinydashboard writexl]; }; 13685 + periscope = derive2 { name="periscope"; version="1.0.0"; sha256="0idf6bwl1n03padgzvid4bkyq00qb59bi3dg0hpvax5fvyjfm9hh"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; 13661 13686 perm = derive2 { name="perm"; version="1.0-0.2"; sha256="182ac1y91yzb34zwdcmx5fdfr5z0cha0gx2bgk36gwxhgfc994kj"; depends=[]; }; 13662 13687 permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; }; 13663 13688 permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; 13664 13689 permPATH = derive2 { name="permPATH"; version="1.2"; sha256="074knhcn88nzisfl20ais71micnnjqbm5lqp6jfkqj176r2af7cq"; depends=[R2HTML xtable]; }; 13665 13690 permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; 13666 13691 permubiome = derive2 { name="permubiome"; version="1.3.1"; sha256="0a4swfkmqqr8a1psc6rlnxnpm43fj42gjkikcqy8d84wrfz2wrr9"; depends=[dabestr ggplot2 gridExtra Matrix rlang]; }; 13667 - permuco = derive2 { name="permuco"; version="1.1.0"; sha256="1mp3yp4p1b382c31a3jcmq1n90zvb1lggacb3zdblpmz1yrj4v1c"; depends=[Matrix permute]; }; 13692 + permuco = derive2 { name="permuco"; version="1.1.1"; sha256="09n0q0p98bcbsp9n6hf4i6jfpnp0j0f97idz2bc8jp2qx5pcr7am"; depends=[Matrix permute Rcpp]; }; 13668 13693 permutations = derive2 { name="permutations"; version="1.0-9"; sha256="1701jah8i9frw3cbqlri2l56lansw54l3pp9h1fy36a8ahhcllkg"; depends=[magic numbers partitions]; }; 13669 13694 permute = derive2 { name="permute"; version="0.9-5"; sha256="0ra8p5mf2590azrkas8z2ry7mif77xqxd29n4zgyi5vll225726j"; depends=[]; }; 13670 13695 permutes = derive2 { name="permutes"; version="2.2"; sha256="0cmpngzl76v7mjdwk9b70a60gycsx9kw7laxswdh6j9wi0jcpp2a"; depends=[plyr]; }; ··· 13807 13832 pivottabler = derive2 { name="pivottabler"; version="1.5.3"; sha256="0j19y4pq0y6li21fwf1sdbzy16gddjlllj9laaslsxp76zc1sjnl"; depends=[data_table dplyr htmltools htmlwidgets R6]; }; 13808 13833 piwikproR = derive2 { name="piwikproR"; version="0.3.1"; sha256="110lyvl7dspqki5yv95j6jvxswyfd962iidsh1hraqvhs4k44s9q"; depends=[digest dplyr fs httr lubridate magrittr purrr readr rjson rlang stringr tibble]; }; 13809 13834 pixarfilms = derive2 { name="pixarfilms"; version="0.2.1"; sha256="1qycg7ar9l3myj14xvidxrm9svdf5xmw7ss0m33q266nzwssiqpk"; depends=[tibble]; }; 13835 + pixelclasser = derive2 { name="pixelclasser"; version="1.0.0"; sha256="155igzq6wsy5nvx5vxkykh9z8q1winb6sl9z473d5jqj78yq3icx"; depends=[jpeg tiff]; }; 13810 13836 pixelpuzzle = derive2 { name="pixelpuzzle"; version="1.0.0"; sha256="1bgy9anhgmjfy97816g2ns5pg5vsm7dwdn5l01m2zma6qnq01knm"; depends=[beepr cli stringr]; }; 13811 13837 pixels = derive2 { name="pixels"; version="0.1.1"; sha256="1vvahrajm8ys5vgfc0iyzj2a6vzvgaakkj6i0m2sy40l2w44dn0q"; depends=[htmlwidgets miniUI shiny]; }; 13812 13838 pixiedust = derive2 { name="pixiedust"; version="0.9.1"; sha256="1jy3xr4wpfs8j3giyia1kwrb5nlmqjbjwvj9qpax6izmcdk4srz2"; depends=[broom checkmate htmltools knitr labelVector magrittr reshape2 scales]; }; ··· 13868 13894 plot3logit = derive2 { name="plot3logit"; version="3.1.0"; sha256="0iwhaly6lzpfaanyy1qayl6faihw5rkcnh21czdr1g0f9rjimyrb"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; 13869 13895 plotDK = derive2 { name="plotDK"; version="0.1.0"; sha256="0lyhhc8yjxj3jhw72pn7i565z64mifi5iyc375yavs7axlcsl2nr"; depends=[dplyr ggplot2 mapproj plotly purrr rlang]; }; 13870 13896 plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; 13897 + plotKML = derive2 { name="plotKML"; version="0.8-2"; sha256="1hdyvff76k40lrzw4vq8azdpxzxxabgkgxixkqvnw5cda362nyfh"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; }; 13871 13898 plotMCMC = derive2 { name="plotMCMC"; version="2.0.1"; sha256="0vxw6kbs1xvzi3sklxac9q1j4cbr8alr9c8fwifwyvpzpdk48ihf"; depends=[coda gplots lattice]; }; 13872 13899 plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; 13873 13900 plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; ··· 13933 13960 poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; 13934 13961 pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; 13935 13962 pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; 13936 - podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; }; 13937 13963 poems = derive2 { name="poems"; version="1.0.1"; sha256="15987nz7gx94lrkyizg0jdzkjnib5hykla7xrkg5fi0i6cch40bl"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; 13938 13964 pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; 13939 13965 poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; 13940 13966 poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; 13941 13967 pointRes = derive2 { name="pointRes"; version="2.0.0"; sha256="17rrdcpvd8v95g5vmbyq5gjpcc3rfbq3m6ajzc56fcizcqd4xx52"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; 13942 - pointblank = derive2 { name="pointblank"; version="0.8.0"; sha256="1fzi0jp6ldpq91jjnnv15d45bkq8qklpkka2jay3x6q1nv32clgf"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; 13968 + pointblank = derive2 { name="pointblank"; version="0.9.0"; sha256="15f2v6dvbz34vwy1gdc32p511k1klrcjwyvrfk614niz8fygd256"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; 13943 13969 pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; 13944 13970 pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; 13945 13971 poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; ··· 13997 14023 poolr = derive2 { name="poolr"; version="1.0-0"; sha256="1319q7047pm0giqqkiz1wswpvixwirz1bcn27chvzirp3n4pgxdx"; depends=[mathjaxr]; }; 13998 14024 poorman = derive2 { name="poorman"; version="0.2.5"; sha256="05h7rjgri0b5a1jd0388p7lqvvg0y8z6g42f9bxc80jg1z730axr"; depends=[]; }; 13999 14025 pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; 14026 + popEpi = derive2 { name="popEpi"; version="0.4.9"; sha256="1a79n3rry85qa52cn7zbhwbsyjgw7b72l97pw3p9sf2lgvacvxr1"; depends=[data_table Epi survival]; }; 14000 14027 popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; 14001 14028 popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; 14002 14029 popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; }; ··· 14008 14035 poppr = derive2 { name="poppr"; version="2.9.3"; sha256="0f8gw14vz4p6jvxa8w3fp84pm1k980mk5sfbj82qmmj236rfvyx9"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas polysat progressr rlang shiny vegan]; }; 14009 14036 popsom = derive2 { name="popsom"; version="5.2"; sha256="0zy50bssxpnlpvf72iiab7yfnfs2b4avd38pjilyi197dgcy2pj5"; depends=[fields ggplot2 hash]; }; 14010 14037 poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; 14011 - populR = derive2 { name="populR"; version="0.1.1"; sha256="0hw7j08css008f0c1lz7xhv47sbxj096qw4md7x46yahpgfsa0c6"; depends=[sf]; }; 14038 + populR = derive2 { name="populR"; version="0.1.2"; sha256="0n7czp5s7yxdwsbsm4xai0mnlyx5cac4f9w2imhyczh1843wwnf0"; depends=[rlang sf]; }; 14012 14039 populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; 14013 14040 porridge = derive2 { name="porridge"; version="0.2.1"; sha256="03ay6nwq0x3vvpicb50zk2l14hfa6hi51j6cc559p6gzcwf70pj1"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; 14014 14041 portalr = derive2 { name="portalr"; version="0.3.8"; sha256="1fb3kvpky47bxmf6q91j98pncym0siki7lh7x96l1lqyhg2si5s4"; depends=[clipr clisymbols crayon dplyr forecast gh httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; ··· 14123 14150 prevR = derive2 { name="prevR"; version="3.4.1"; sha256="02qfyc5j7rgvwl7a5pr1l41jmgjxxsrc674xfm08hcydwda5clq1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; 14124 14151 prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; 14125 14152 prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; 14126 - previsionio = derive2 { name="previsionio"; version="11.3.0"; sha256="07faylaf1r1kfxsdn3229bz31mjmkmagvw126p24iykwd7cpd3sg"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; 14153 + previsionio = derive2 { name="previsionio"; version="11.3.1"; sha256="13ypvlw2lz41v85rp7nqsv43n27far7jllf5ni4kvmpxw0xwi52c"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; 14127 14154 prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; 14128 14155 prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; }; 14129 14156 priceR = derive2 { name="priceR"; version="0.1.6"; sha256="1c2yxjrd9v5i76hc5dn0hc6k2shy9cs32mvhr579w7n990ksjw23"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; ··· 14139 14166 prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; 14140 14167 printr = derive2 { name="printr"; version="0.2"; sha256="0lf538m7skrd7cmy0n118y5s0qk48q0xgqvqag20j34if1h44r4a"; depends=[knitr]; }; 14141 14168 prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; 14169 + prioritizr = derive2 { name="prioritizr"; version="7.1.1"; sha256="1d2nsbixfn6nk6icb78kiddpgpn7z2gvinmd19laqdj7a3lbknax"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf slam sp tibble uuid withr]; }; 14142 14170 prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.4"; sha256="0027nbkvp8b2w4cciabiqjdyxhjwh47k7dc36p79mkqfarh04rgv"; depends=[raster sp]; }; 14143 14171 prioritylasso = derive2 { name="prioritylasso"; version="0.2.5"; sha256="1myci7akab1fg7p72q1hrchkixs7q5lagdsfpmdbvd13yy4q3h5z"; depends=[glmnet survival]; }; 14144 14172 prism = derive2 { name="prism"; version="0.2.0"; sha256="0gl6qmpgfdxn90aw10z4xj4ijcwj9mr0s9ahm28niinr9y89gzxk"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; ··· 14175 14203 profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; 14176 14204 profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; 14177 14205 profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; 14178 - profoc = derive2 { name="profoc"; version="0.8.4"; sha256="1i06gv1gp64905bhmsar57a6p4cfp3sznynbavxk0hfc4xx933r4"; depends=[Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; 14206 + profoc = derive2 { name="profoc"; version="0.8.5"; sha256="0i41qdgwj9ajgp7a6gl558cbf30hjk12278inbr60jhhd92gaa69"; depends=[Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; 14179 14207 profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; 14180 14208 proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; 14181 14209 profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; ··· 14227 14255 provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; 14228 14256 proxirr = derive2 { name="proxirr"; version="0.1"; sha256="1lb32fdfswdrczylhfz5f0aawg7rkxzzsav37m551makn6a26k49"; depends=[]; }; 14229 14257 proxy = derive2 { name="proxy"; version="0.4-26"; sha256="0k8sr24mjfvxp12sf1j9228ah3ngy15nqmm0jw14x5s32f1assv7"; depends=[]; }; 14230 - proxyC = derive2 { name="proxyC"; version="0.2.1"; sha256="1j8zsxdnpi8bywd7hhm47icgl1jhfyd8myj78bqgk7warai6m3iq"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; 14258 + proxyC = derive2 { name="proxyC"; version="0.2.2"; sha256="107z7di0xkil58pf051abp8v729rg4gk47bp9a1h5z1xwp132fnh"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; 14231 14259 prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; 14232 14260 prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; 14233 14261 prt = derive2 { name="prt"; version="0.1.4"; sha256="0adbznxacdfqd9hvp5x45vckh6vxlz2fvhqdqikmfy99k9gzcd4c"; depends=[assertthat backports cli crayon data_table fansi fst pillar rlang tibble vctrs]; }; ··· 14271 14299 psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; 14272 14300 psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; 14273 14301 psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; 14274 - psychonetrics = derive2 { name="psychonetrics"; version="0.9"; sha256="1z6k6j5r08swgqbc9132c4pp42aqyrmvl8185bw94zhyivpgkrar"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo roptim tidyr VCA]; }; 14302 + psychonetrics = derive2 { name="psychonetrics"; version="0.10"; sha256="09jv7ladas5yfj51nv323z2hgyamd6q40vi07wfypimpi3h4szyh"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; 14275 14303 psychotools = derive2 { name="psychotools"; version="0.7-0"; sha256="11gybrf9d90nbqfm76qr2z9y4bn498j1csg5zir38k5inpw5bk3x"; depends=[]; }; 14276 14304 psychotree = derive2 { name="psychotree"; version="0.15-4"; sha256="0ni8ajl0hzl4spm71c0myhv16an00j0brb4gyzg2fgkqs6rm34l2"; depends=[Formula partykit psychotools]; }; 14277 14305 psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; ··· 14392 14420 qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; 14393 14421 qrLMM = derive2 { name="qrLMM"; version="2.1"; sha256="1viyllsd08dwgd5z930ml1nrcc9saaa18i5sx0bska8b0s7qh414"; depends=[ald lqr mvtnorm psych quantreg]; }; 14394 14422 qrNLMM = derive2 { name="qrNLMM"; version="3.1"; sha256="15gr3wg8d4kh5fl006p4ddfsxzx7wypniwk5h2dai5c3ag7ki59c"; depends=[ald lqr mvtnorm progress psych quantreg]; }; 14395 - qra = derive2 { name="qra"; version="0.2.6"; sha256="004zski4a3p7fc804zlhf79piaw5k9cb0fz9qqhnl654ygqgkx6p"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; 14423 + qra = derive2 { name="qra"; version="0.2.7"; sha256="0wx0lz8a7qc1fdpvgyfhpbryy7wk7yi90ii2yirh57dvpyfq54m0"; depends=[ggplot2 knitr lattice latticeExtra lme4 rmarkdown]; }; 14396 14424 qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; 14397 14425 qrandom = derive2 { name="qrandom"; version="1.2.4"; sha256="0a75pz9bhy6bqxlz02bgkgi83hrq06p9ah7qf8n0pdc2rh3sy1cx"; depends=[curl jsonlite Rmpfr]; }; 14398 14426 qrcm = derive2 { name="qrcm"; version="3.0"; sha256="0y1na936vk5qsir5plzjrbv39jpnq01qplza32z31x6y28is2fz9"; depends=[pch survival]; }; ··· 14457 14485 quantreg = derive2 { name="quantreg"; version="5.86"; sha256="01fnp6ndh7npxj76xlynndacsgmcfr9kgh2waw0clx3mmwlwilbi"; depends=[conquer Matrix MatrixModels SparseM]; }; 14458 14486 quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; 14459 14487 quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; 14460 - quantregGrowth = derive2 { name="quantregGrowth"; version="1.3-0"; sha256="0wba52277fxg0d8m5d6c2cajak7nzrrrx49asj4rwijns8i9kc3c"; depends=[quantreg]; }; 14488 + quantregGrowth = derive2 { name="quantregGrowth"; version="1.3-1"; sha256="00avyjpbwh3y3pmncppkwl4545s2m1x77nllpih7sry4wds7rkj7"; depends=[quantreg]; }; 14461 14489 quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; 14462 14490 quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; 14463 14491 quarks = derive2 { name="quarks"; version="1.0.9"; sha256="02yjmbv0lm940g74d4q6xhmv158ghis9n9s84g09j3q8wzkgmsld"; depends=[rugarch]; }; ··· 14480 14508 quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; 14481 14509 quiddich = derive2 { name="quiddich"; version="1.0.0"; sha256="10kiyn1all58klyygmz6zw0w9nfl9vq19qybmkqh410rd5ryjz3p"; depends=[ape]; }; 14482 14510 quietR = derive2 { name="quietR"; version="0.1.0"; sha256="1f923dllhchgf49bp2d9186v3cxzdya6i56ww6cj0n0mh8gfi27z"; depends=[]; }; 14483 - quincunx = derive2 { name="quincunx"; version="0.1.1"; sha256="1qlf5w5c8bbg0fb0jicmkqyvq58znmc2g9xamgy8pb1m6pl3cdhj"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; 14511 + quincunx = derive2 { name="quincunx"; version="0.1.4"; sha256="1gpkhg1mvk66d2srbmacxpmpp30bvz048n2b1v61gz1f99lqmx29"; depends=[concatenate dplyr glue httr lubridate magrittr memoise progress purrr rlang rvest stringr tibble tidyjson tidyr vroom writexl]; }; 14484 14512 quint = derive2 { name="quint"; version="2.1.0"; sha256="0rivacjccr3gdw5w4mzdjyrhw4lpww9665pwyrm845w165h9bi53"; depends=[Formula partykit rpart]; }; 14485 14513 quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; }; 14486 14514 quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; ··· 14512 14540 r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; 14513 14541 r4ss = derive2 { name="r4ss"; version="1.36.1"; sha256="03xin7avdbg5ayrcdbw5rx9sh6ingjq2kv3405h01vqf1jhkfsxk"; depends=[coda corpcor gdata gplots gtools kableExtra pso truncnorm]; }; 14514 14542 r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; 14515 - r5r = derive2 { name="r5r"; version="0.5.0"; sha256="1d5gm0jhhhfl8dl9pw0zmxpj7yagjc1yp2k7702mri8yz76c69xv"; depends=[checkmate curl data_table httr jdx raster rJava sf sfheaders]; }; 14543 + r5r = derive2 { name="r5r"; version="0.6.0"; sha256="0wzkv7m44vrc9zrffvjxlqnf97cjc40kzjfm6w24xz7ic54glc4z"; depends=[checkmate curl data_table httr raster rJava sf sfheaders]; }; 14516 14544 r6extended = derive2 { name="r6extended"; version="0.1.2"; sha256="1kq1j5rx57053mslj8jx1s0wjvhis7x3y264zw44q4k2x48q9wxs"; depends=[digest hellno magrittr R6]; }; 14517 14545 r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; 14518 14546 rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; ··· 14534 14562 rCRM = derive2 { name="rCRM"; version="0.1.1"; sha256="03p2v1wb7hsvfhdcgawaz8vd2i8kh30dj8mjydlaywxyks6i5caz"; depends=[Rcpp RcppEigen]; }; 14535 14563 rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; 14536 14564 rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; 14537 - rD3plot = derive2 { name="rD3plot"; version="1.0.22"; sha256="0s0968jvsicfaw4ankhbd2ylnk2k2ghfxmf2y30aqvjqz2czfzp6"; depends=[igraph]; }; 14565 + rD3plot = derive2 { name="rD3plot"; version="1.0.25"; sha256="1ilkd3ixkqpdi7hy6sdss53s40w640n7c7v7nb8khqlpfghkrpch"; depends=[igraph]; }; 14538 14566 rDEA = derive2 { name="rDEA"; version="1.2-6"; sha256="0045crn7azsy3ggzr28vw5jd4f5aw5nj16cjnjxy2md3skfbc3zw"; depends=[maxLik slam truncnorm truncreg]; }; 14539 14567 rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; 14540 14568 rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; 14541 14569 rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; 14542 14570 rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; 14543 14571 rEDM = derive2 { name="rEDM"; version="1.9.3"; sha256="03919425xd1dl2fwybq4rpbv5lcqm4qfk23mxszm3jgdhxb2i1s6"; depends=[Rcpp RcppThread]; }; 14544 - rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; 14572 + rEMM = derive2 { name="rEMM"; version="1.1.0"; sha256="18bpskhrafj0b5rnzisrsk5x5gifqn7dpawcsgdrg7rbnz7y1wzr"; depends=[cluster clusterGeneration igraph MASS proxy]; }; 14545 14573 rENA = derive2 { name="rENA"; version="0.2.3"; sha256="067xpw1mgb2y15ld4qc6mnf4b9k7nw8am9qz4ms980wyfp4ffjmj"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; 14546 14574 rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; 14547 14575 rFIA = derive2 { name="rFIA"; version="0.3.2"; sha256="0q1256frfd485bs3zay99ndlvz0x26286hy5vys364jdfjv25zda"; depends=[bit64 data_table dplyr dtplyr ggplot2 lifecycle rlang sf stringr tidyr tidyselect]; }; ··· 14595 14623 rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; 14596 14624 rSPDE = derive2 { name="rSPDE"; version="0.6.3"; sha256="07dgdiygj39c1ykd910pb6dhnivbmi14b5g70pwpxjab7l9dzaw4"; depends=[Matrix]; }; 14597 14625 rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; 14626 + rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; 14598 14627 rTG = derive2 { name="rTG"; version="0.2.2"; sha256="0f1syh2v8a0klcz7rvi8nrn1qv8rjl69ssrliqnh2zpy7c6ck9xs"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; 14599 14628 rTRNG = derive2 { name="rTRNG"; version="4.23.1-1"; sha256="0jlkr57afkg6axkdk020rd3nybx1qzwvy1hjgfw8fwvm79x0kpr7"; depends=[Rcpp RcppParallel]; }; 14600 14629 rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; ··· 14607 14636 rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; 14608 14637 rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; 14609 14638 ra4bayesmeta = derive2 { name="ra4bayesmeta"; version="1.0-7"; sha256="07fcjqw8w787pcfzjxxwq6160433ms6xk9qrvvm8ybxd7n0f5i44"; depends=[bayesmeta]; }; 14610 - rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; }; 14611 14639 rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; 14612 14640 raceland = derive2 { name="raceland"; version="1.1.1"; sha256="1sb56id7h1nm34a7kf6abfxwh4kmnnzc51x23cijq6fd3jm4ggnr"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; 14613 14641 racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; ··· 14628 14656 radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; 14629 14657 radsafer = derive2 { name="radsafer"; version="2.2.5"; sha256="08088mifqlhkg8qrly2v1idvzl96fg2zymn812yqwppxjgcymzbz"; depends=[dplyr ggplot2 ggthemes magrittr qpdf RadData readr rlang scatterplot3d stringr utf8]; }; 14630 14658 rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; 14631 - ragg = derive2 { name="ragg"; version="1.1.3"; sha256="0ppypfq1vipwjngmiwdx1sj6x7m41v3dlnbsixdlnrf2nx82kxb2"; depends=[systemfonts textshaping]; }; 14659 + ragg = derive2 { name="ragg"; version="1.2.0"; sha256="1wbk7vny8435ii3aak586imd0dgh4ri55kqypx5b10x6ygp32avb"; depends=[systemfonts textshaping]; }; 14632 14660 rags2ridges = derive2 { name="rags2ridges"; version="2.2.5"; sha256="0aqfm8f58xrq81bd80parkwj28i6m0bxdpq6qp1iy3qyxsq5as64"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; 14633 14661 ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; 14634 14662 ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; ··· 14639 14667 rainfarmr = derive2 { name="rainfarmr"; version="0.1"; sha256="1gasnmyjnis6vv0krx6299ck2a6v9v1fgqajzqdpjaz2fsxn245i"; depends=[]; }; 14640 14668 rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; 14641 14669 ralger = derive2 { name="ralger"; version="2.2.4"; sha256="1j0np7h051dglva3dj9b64fagr99hvpsza1q2fnc7g3x1ki7mgni"; depends=[crayon curl dplyr robotstxt rvest stringi stringr tidyr xml2]; }; 14642 - ramchoice = derive2 { name="ramchoice"; version="1.1"; sha256="1im9r95109919hfmici6avdqxh3a375wmg2lfy75z1gjivvcygbr"; depends=[MASS]; }; 14670 + ramchoice = derive2 { name="ramchoice"; version="2.0"; sha256="113kyqpq2yhlvf4wyz9a8cqcqlg7rv9q5hv3lfxlgifsa7jvgnjm"; depends=[MASS]; }; 14643 14671 ramcmc = derive2 { name="ramcmc"; version="0.1.2"; sha256="1a4r8010bsz5lzpznmr6akxjiif35kaylp2h72ky7gg4qn0bhpxz"; depends=[Rcpp RcppArmadillo]; }; 14644 14672 rameritrade = derive2 { name="rameritrade"; version="0.1.5"; sha256="1yp655zy1zn86x49adg3wwq8jvflm64a8gyaf9f3w75ihjy470bf"; depends=[dplyr httr jsonlite lubridate magrittr urltools]; }; 14645 14673 ramify = derive2 { name="ramify"; version="0.3.3"; sha256="0cxmkxhshg0vrcxai2gbm4iih04f44liv5nh5jiq85hjz8qbhdi2"; depends=[]; }; ··· 14669 14697 randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; 14670 14698 randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; 14671 14699 randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; 14672 - randtoolbox = derive2 { name="randtoolbox"; version="1.30.1"; sha256="0qg20ar6qns858jdzqhmfq7yji81czhr6cim257958gqpj66sn95"; depends=[rngWELL]; }; 14700 + randtoolbox = derive2 { name="randtoolbox"; version="1.31.1"; sha256="1b9vjzqg014hxp1vfb62m01d7xim5vmpbyxzlbll49bqas0jx69h"; depends=[rngWELL]; }; 14673 14701 rangeBuilder = derive2 { name="rangeBuilder"; version="1.5"; sha256="17wyf9ljgdbpxgl9gy6f1279h88k0rjfcarw7kgp145bm3c36jwf"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; 14674 14702 rangeMapper = derive2 { name="rangeMapper"; version="2.0.2"; sha256="00wnjvmqkqjdw1r60z95ax0zh5wsvclk5qqwwwv50d0p9kjv4939"; depends=[data_table DBI exactextractr future future_apply glue magrittr progressr raster RSQLite sf]; }; 14675 14703 rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.4"; sha256="102z7ysbw0i1mbnwg0v3h0i094ksw91q84a53qyxndq4m6f557aj"; depends=[dplyr jsonlite MASS raster rgbif rgdal rgeos shiny sp spatstat spocc spThin]; }; ··· 14696 14724 rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; 14697 14725 rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; 14698 14726 rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; 14699 - rasciidoc = derive2 { name="rasciidoc"; version="3.1.3"; sha256="0ff41czw8mmg2rf2k8swssnm305wrqc0jn674in36s9mizdqiwdy"; depends=[checkmate document fritools gert highr knitr reticulate]; }; 14727 + rasciidoc = derive2 { name="rasciidoc"; version="3.1.4"; sha256="0wy16zaz4b8yjjb9vwxwz327z3r56nmsxr63rfcammfflz0hv3d9"; depends=[checkmate document fritools gert highr knitr reticulate]; }; 14700 14728 rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; 14701 14729 rassta = derive2 { name="rassta"; version="1.0.1"; sha256="03abcgg5310avlwmphr6inw1dnyj2g9rp1jzry9wfi3yshpf15b4"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; 14702 14730 raster = derive2 { name="raster"; version="3.5-2"; sha256="0wixw1ixnmcmkwczpj8m90c76727zira2rl4ighashggydkm2mlr"; depends=[Rcpp sp terra]; }; ··· 14754 14782 rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; 14755 14783 rbmn = derive2 { name="rbmn"; version="0.9-4"; sha256="039scbjzigj9ks62l8yagfpr3bpslvxg1nqv22pyw8jay8i6993g"; depends=[MASS]; }; 14756 14784 rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; 14757 - rbooster = derive2 { name="rbooster"; version="1.0.2"; sha256="0y2lk73nmfghaafhgrbc5i4kg2p7wbky1qlvyaas5v5aqps3smqk"; depends=[earth Hmisc rpart]; }; 14785 + rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; 14758 14786 rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; 14759 14787 rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; 14760 14788 rbscCI = derive2 { name="rbscCI"; version="0.1.0"; sha256="12r1f4yy5hx0sx1q77yzq3wxhbx8zgj9d1jfpa1hagvwcyd8bdxb"; depends=[BH Rcpp]; }; ··· 14768 14796 rcarbon = derive2 { name="rcarbon"; version="1.4.2"; sha256="04s1gqrfa5hy93jnqj5sqii49gz7mq7nm23jnd0iwl48f847vka1"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; 14769 14797 rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; 14770 14798 rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; 14799 + rcbayes = derive2 { name="rcbayes"; version="0.1.0"; sha256="00pr7fh33nsl84m5p32a010pyw2cgyjlqsjrlz3hlwwggwlfw1rw"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; 14771 14800 rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; 14772 14801 rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; 14773 14802 rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; ··· 14842 14871 readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; 14843 14872 readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; 14844 14873 readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; 14845 - readabs = derive2 { name="readabs"; version="0.4.9"; sha256="0qqfks7ar2zv67rd8ni5dz15a85x82xpjvhw9iazdcfcmp5aj8dl"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; 14874 + readabs = derive2 { name="readabs"; version="0.4.10"; sha256="1sbv34v2b0ibml9fhbkpg4yyb5pmggbfn0iibxb47pdj08srf4cq"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; 14846 14875 readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; 14847 14876 readbulk = derive2 { name="readbulk"; version="1.1.3"; sha256="0rqz0r5ygwgfqkzv2130sciz3j2p888c2005wsk1m5403syi78an"; depends=[jsonlite plyr]; }; 14848 14877 reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; ··· 14950 14979 rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; 14951 14980 relaimpo = derive2 { name="relaimpo"; version="2.2-6"; sha256="1v2zvakzrnc89dshhpkrikfwa7l786sk5vnz4khil5f53biahm4r"; depends=[boot corpcor MASS mitools survey]; }; 14952 14981 relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; 14953 - relations = derive2 { name="relations"; version="0.6-9"; sha256="0vq4wawj9k3a9n70i7y6c7k2jylmyczsi6iqssydn5z5h48m15fj"; depends=[cluster sets slam]; }; 14982 + relations = derive2 { name="relations"; version="0.6-10"; sha256="13h6snbbczwk4zcpsmbbrxvhy6dwv1pm2zwfh0cz2sr7djhb0q5n"; depends=[cluster sets slam]; }; 14954 14983 relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; 14955 14984 reldist = derive2 { name="reldist"; version="1.6-6"; sha256="09vips7spcz0fahrpy0bl15hk43zgnq74h189hmygyi41l95aywa"; depends=[Hmisc mgcv]; }; 14956 14985 relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; ··· 14963 14992 relliptical = derive2 { name="relliptical"; version="0.1.0"; sha256="122gv5pckx87hsczfqsac6nwh54a6y1ka066aab2zlrhrlx0wx2y"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo RcppEigen RcppNumerical Rdpack Ryacas0]; }; 14964 14993 relsurv = derive2 { name="relsurv"; version="2.2-5"; sha256="0bqmr493jdk3vkw386gs2bk688bja5yg14ax1rb88bf6i6fqqcy8"; depends=[date survival]; }; 14965 14994 rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; 14995 + rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; 14966 14996 remap = derive2 { name="remap"; version="0.2.1"; sha256="0fvi0scrjcghkfamdilfyqqn0v9zlgpjdkqwk4ylhpb85x5pv534"; depends=[sf units]; }; 14967 14997 rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; 14968 14998 rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; ··· 14975 15005 renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; 14976 15006 rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; 14977 15007 renv = derive2 { name="renv"; version="0.14.0"; sha256="194hcxikdnna526bvyz9y60ccmmm9fib5g0w9dqivrg0fld23lyh"; depends=[]; }; 15008 + repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; 14978 15009 repana = derive2 { name="repana"; version="1.23.2"; sha256="1wic76sln37qjdrviaz689c5gjf4pc3ffdgvzcvjh0kjvl7d8jfh"; depends=[config DBI dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi]; }; 14979 15010 repeated = derive2 { name="repeated"; version="1.1.2"; sha256="19kcsj96i1zpnwfan3gz5vrzc2gqlah0wrdr9vb4vvacz45wcdfq"; depends=[rmutil]; }; 14980 15011 repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; ··· 15063 15094 rfacts = derive2 { name="rfacts"; version="0.1.1"; sha256="1qkc619vhph6lgrf59kbz9cda2vqwfvb5b9mm2f11qqy310ha9aj"; depends=[digest fs tibble xml2]; }; 15064 15095 rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.0"; sha256="1s7awczna9dxdq97sr5fsbs4qv7rx4wi2z3inwdp33md1bvyq4i7"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; 15065 15096 rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; 15097 + rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; }; 15066 15098 rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; 15067 15099 rfishbase = derive2 { name="rfishbase"; version="3.1.9"; sha256="0mviki09ydgbnd5mgbikvijxjfg7jrf836campnlz0b9xvk32kb8"; depends=[arkdb curl DBI dbplyr dplyr gh magrittr memoise progress purrr readr rlang RSQLite stringr]; }; 15068 15100 rfishdraw = derive2 { name="rfishdraw"; version="0.1.0"; sha256="0204s8jy6shr694hacrq4j0lia9l59rk8kc75sdw87c09q7kjld2"; depends=[ggplot2 jsonlite]; }; 15069 15101 rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; 15070 15102 rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; 15071 - rflexscan = derive2 { name="rflexscan"; version="0.4.0"; sha256="1hp8crrs0f534j60db1byi3jcn815kl1i7afrzh6ww48mxnmxrhj"; depends=[igraph Rcpp rgdal sp]; }; 15103 + rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; 15072 15104 rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; 15073 15105 rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; 15074 15106 rfordummies = derive2 { name="rfordummies"; version="0.1.5"; sha256="1glzc20sbv90fbazy3wh6drqd5dkh47s3fjqzgm78dkmj6gp9hdv"; depends=[openxlsx]; }; ··· 15198 15230 rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; 15199 15231 rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; 15200 15232 rmarkdown = derive2 { name="rmarkdown"; version="2.11"; sha256="0xcpg9d009a71p5i6jczw02qcp907p5d52lp6vclrsp7019jawck"; depends=[evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; 15201 - rmatio = derive2 { name="rmatio"; version="0.15.0"; sha256="1lrr6lga8inai3d0sicvyj2km4rc46qrr827m0lzjf7687i7mjxm"; depends=[Matrix]; }; 15233 + rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; 15202 15234 rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; 15203 15235 rmcorr = derive2 { name="rmcorr"; version="0.4.4"; sha256="1g70savkj04mphmk4636k5jkrk3cbjs8np1r4ayki50n4zzb6p0j"; depends=[psych RColorBrewer]; }; 15204 15236 rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; ··· 15238 15270 rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; 15239 15271 rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; 15240 15272 rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; 15241 - rngWELL = derive2 { name="rngWELL"; version="0.10-6"; sha256="0pjjcs9pqj7mf0mhb2cwd0aanqpwnm65bm86hk6mi2vw8rgnj2vv"; depends=[]; }; 15273 + rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; 15242 15274 rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; 15243 15275 rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; 15244 15276 rnn = derive2 { name="rnn"; version="1.4.0"; sha256="0k960jylbvg8r453430d8dpdzydkk3yr5np8rxkay79533ikrcgy"; depends=[shiny sigmoid]; }; 15245 15277 rnoaa = derive2 { name="rnoaa"; version="1.3.4"; sha256="1yrasq4wgi5q783zyv00xxqzv0r8mrzdv9q7mkabawdmpxji3f1y"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; 15278 + rnpn = derive2 { name="rnpn"; version="1.2.3"; sha256="13dkl66x9lpm7ycql53by6vln24q8lira2sjd4rvpxghjy1czfva"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; 15246 15279 rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; 15247 15280 rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; 15248 15281 roadoi = derive2 { name="roadoi"; version="0.7.1"; sha256="1diprwir4agp2ifcgfsla1kd5m0y5cnc7ixhh6pqdvlgax5wx96w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; ··· 15252 15285 robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; 15253 15286 robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; 15254 15287 robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; 15288 + robcp = derive2 { name="robcp"; version="0.3.3"; sha256="0mdg61k76dz5a7wggdlq8cfym8bvzl5ybm7hhc8kvyllmmvvb1y9"; depends=[Rcpp]; }; 15255 15289 roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; 15256 15290 robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; 15257 15291 robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; ··· 15269 15303 robslopes = derive2 { name="robslopes"; version="1.0.2"; sha256="04767ggjjsgm31ysk5xw8jvdnjdbk4fmrrsi83ksz746kl0xafzp"; depends=[Rcpp RcppArmadillo]; }; 15270 15304 robsurvey = derive2 { name="robsurvey"; version="0.1.1"; sha256="0rf2sd7maz565hlgpyhvkswqyck01hif4mg5isbnnky9n3nc98pi"; depends=[survey]; }; 15271 15305 robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; 15272 - robust = derive2 { name="robust"; version="0.5-0.0"; sha256="1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42"; depends=[fit_models lattice MASS robustbase rrcov]; }; 15306 + robust = derive2 { name="robust"; version="0.6-0"; sha256="1nq21ka5qyyyx84vcpycwk553z9a0s94hlgqaqzghmxnygdhg7sf"; depends=[fit_models lattice MASS robustbase rrcov]; }; 15273 15307 robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; 15274 15308 robustDA = derive2 { name="robustDA"; version="1.2"; sha256="0kxdqvv17dgnlqp0hkazwfqsg3h4g9gw1w57blwpay67xp4d1jyx"; depends=[MASS mclust Rsolnp]; }; 15275 15309 robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; ··· 15292 15326 rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; 15293 15327 rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; 15294 15328 roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; 15295 - rock = derive2 { name="rock"; version="0.4.3"; sha256="0rnvjjl1w0d5x688za63yj2dnldr988529h05rpbhyg6gwfgq42a"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; 15329 + rock = derive2 { name="rock"; version="0.5.1"; sha256="1abyr9i2p1xjll6cry8hmbgskwr10ki4r0zw29qg8iz2rpxl0zpp"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; 15296 15330 rockchalk = derive2 { name="rockchalk"; version="1.8.144"; sha256="07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb"; depends=[carData kutils lme4 MASS]; }; 15297 15331 rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; 15298 15332 roclang = derive2 { name="roclang"; version="0.1.2"; sha256="139m7biiidcbc3a9nnp5qpdysszrzldhf6dp64rfshp3rjpfssiq"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; ··· 15306 15340 rollRegres = derive2 { name="rollRegres"; version="0.1.3"; sha256="1rf6hdbndindq6kr5yzyqq4jy1c11shfdvjb8mwm957dd0kbs3rx"; depends=[checkmate Rcpp RcppArmadillo]; }; 15307 15341 rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; 15308 15342 rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; 15309 - rollinglda = derive2 { name="rollinglda"; version="0.1.0"; sha256="13lpjamki3yk0ngfkzx985y04ahj8762slji29vjrlcc72lsmgd5"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; 15343 + rollinglda = derive2 { name="rollinglda"; version="0.1.1"; sha256="1sk6szcqsr3nbkwnsdjpsk1fcyk7s4h2zsm02rmbi1h0r0yxb0zr"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; 15310 15344 rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; 15311 15345 roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; 15312 15346 rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; ··· 15327 15361 rorcid = derive2 { name="rorcid"; version="0.7.0"; sha256="1d0s5w48ksyj152nc4xq5w0nsimab8jc5fgspdwnbas2g8a52igr"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; 15328 15362 rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; 15329 15363 rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; 15330 - rosetta = derive2 { name="rosetta"; version="0.3.6"; sha256="1f3wmngx8k3b99qgzy7lzm5pgqk4rmkw1pfhk5a9vhlsibik8h27"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rio rmdpartials ufs viridis]; }; 15364 + rosetta = derive2 { name="rosetta"; version="0.3.8"; sha256="1krc2254z1sy5gi8alvq12bmvmcm16ynpngvasxab09jjfgjsp17"; depends=[car diptest ggplot2 ggrepel gridExtra kableExtra knitr lavaan lme4 multcompView pander plyr psych pwr rio rmdpartials ufs viridis]; }; 15331 15365 rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; 15332 15366 rosm = derive2 { name="rosm"; version="0.2.5"; sha256="10n3yzhk29i3mzbcg6nkjqgvwc9n53ax0d7imn9l4a9msa06as07"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; 15333 15367 rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; ··· 15444 15478 rsprite2 = derive2 { name="rsprite2"; version="0.1.0"; sha256="0pflmdm83gskfbxha7r28w1w7xs2k8shp6w3py5mjjpklm2rn8ny"; depends=[checkmate Rdpack]; }; 15445 15479 rsq = derive2 { name="rsq"; version="2.2"; sha256="1hjzk5mvva4b0r2r8bisg915iz32aiynp8w57d2xikdfb90nw5h0"; depends=[Deriv lme4 MASS Matrix nlme]; }; 15446 15480 rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; }; 15447 - rstac = derive2 { name="rstac"; version="0.9.1-4"; sha256="162y6lbn62r1lmn7x20klw293vj63bq8q1zm3zlyvgaq2im9y8h3"; depends=[crayon httr jsonlite magrittr]; }; 15481 + rstac = derive2 { name="rstac"; version="0.9.1-5"; sha256="08lnz49wba6w1rjrrpm3jpbd4vimhzn4215d049xc4zxqd0h6vbc"; depends=[crayon httr jsonlite lifecycle magrittr]; }; 15448 15482 rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; 15449 15483 rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; 15450 15484 rstan = derive2 { name="rstan"; version="2.21.2"; sha256="0jh58qfrksd2j9w2zy4bajryivgp36m3xdb9mjrjqbk1ib9h83p3"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; }; ··· 15454 15488 rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; 15455 15489 rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; 15456 15490 rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; 15457 - rstoat = derive2 { name="rstoat"; version="1.0.0"; sha256="0chlkvdxkwa8fr1kh3rasph5x837v39jwjvwwcwf6fvqmfbgmfpn"; depends=[curl httr jsonlite keyring]; }; 15491 + rstoat = derive2 { name="rstoat"; version="1.0.1"; sha256="10ksslz675dgpd8ri4d6ranpabl9940g127i7sbhvccdgvz2j44i"; depends=[curl httr jsonlite keyring]; }; 15458 15492 rstpm2 = derive2 { name="rstpm2"; version="1.5.2"; sha256="0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; 15459 15493 rstream = derive2 { name="rstream"; version="1.3.6"; sha256="1mr869hff5wdpw6a7x71366y8dxf9vljbb11fssfkhcf7hm2ipnj"; depends=[]; }; 15460 15494 rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.7"; sha256="1b93hakw5wn8fp99zp22rm8yd27m1884ig1xx5bbcifgxanvic57"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; ··· 15463 15497 rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; 15464 15498 rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; }; 15465 15499 rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; 15500 + rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; 15466 15501 rsvg = derive2 { name="rsvg"; version="2.1.2"; sha256="10p6aps2rsvhf4xgngl9x20cf2wqbzhlpjds8biyihvj58c1q8nn"; depends=[]; }; 15467 - rsyncrosim = derive2 { name="rsyncrosim"; version="1.2.9"; sha256="0hjlgqd4fzsbhh1vrg35kd536d721svg6856npb26zsyvza6nyaj"; depends=[DBI raster RSQLite]; }; 15502 + rsyncrosim = derive2 { name="rsyncrosim"; version="1.3.2"; sha256="1f66mx4s765jsmvgvff3sizp3xmqhc4ipj0j70igyj381xxa937x"; depends=[DBI gtools lifecycle raster RSQLite]; }; 15468 15503 rsyntax = derive2 { name="rsyntax"; version="0.1.2"; sha256="1a0249bzl47vwqivi7rdwfq7b2wx7pxpyps49q0ldn6a0askhhij"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; 15469 15504 rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; 15470 15505 rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; ··· 15495 15530 rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; 15496 15531 rts = derive2 { name="rts"; version="1.1-3"; sha256="1lnfqmi49lmk7zhmgyl1z9hlfxh3gg373wj81x7vw9964564r4wg"; depends=[raster RCurl sp terra xts zoo]; }; 15497 15532 rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; }; 15498 - rtsdata = derive2 { name="rtsdata"; version="0.1.2"; sha256="0h0zk8vy21xh0n6pcipgml0b0f4pfi94q6hjdqkxd3xsa6a5scra"; depends=[alfred anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; 15533 + rtsdata = derive2 { name="rtsdata"; version="0.1.3"; sha256="0ylw8m0wf6jvjl3zirns6qk71lwsrljnvz5dn1ngvp7c1x7y1wn9"; depends=[anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; 15499 15534 rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; 15500 - rtsplot = derive2 { name="rtsplot"; version="0.1.3"; sha256="0va6ir0bmpnw4ibvfh2j4z01flg72dpxn7q10sdsdj304hb0g4in"; depends=[quantmod RColorBrewer xts zoo]; }; 15535 + rtsplot = derive2 { name="rtsplot"; version="0.1.4"; sha256="1zgndf2g39zp67b0ibcy9ib33r0mb7pwmqpy92gb31a0hvckzdj7"; depends=[quantmod RColorBrewer xts zoo]; }; 15501 15536 rtweet = derive2 { name="rtweet"; version="0.7.0"; sha256="05pbvxm2vmf6935b9s6663k3aifnkr3m52wh2jvnplmrwyrfpn9n"; depends=[httpuv httr jsonlite magrittr progress Rcpp tibble]; }; 15502 15537 rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; 15503 15538 rtypeform = derive2 { name="rtypeform"; version="2.1.0"; sha256="02qnsw2nd3fnyr0gbmx3690b78k899dxf04g4bqpjlg9y38g1cnr"; depends=[assertthat dplyr glue httr jsonlite lubridate purrr rlang tibble tidyr]; }; ··· 15518 15553 runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; 15519 15554 rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; 15520 15555 rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; 15521 - rust = derive2 { name="rust"; version="1.3.12"; sha256="06brscgys7256irp2dp731dafjv7m1f5i9w03fix9m1x9d4rc9cf"; depends=[Rcpp RcppArmadillo]; }; 15556 + rust = derive2 { name="rust"; version="1.3.13"; sha256="0j17jcg16vdqzga8szg3fhkir9ls7mbbf1zqfp4nymwy3mkmvhm5"; depends=[Rcpp RcppArmadillo]; }; 15522 15557 ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; 15523 15558 rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; 15524 15559 ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; ··· 15526 15561 rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; 15527 15562 rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; 15528 15563 rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; 15529 - rvcheck = derive2 { name="rvcheck"; version="0.2.0"; sha256="09gx29q882vh4q1qbb8z8lc3pgmpn7bk8skzcm85mrf3x3vgvkpa"; depends=[BiocManager yulab_utils]; }; 15564 + rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; 15530 15565 rversions = derive2 { name="rversions"; version="2.1.1"; sha256="1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr"; depends=[curl xml2]; }; 15531 15566 rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; 15532 15567 rvest = derive2 { name="rvest"; version="1.0.2"; sha256="1905vxgnj3q09l1wf6rwxpbpydznp06nbkrclnc05j2415z4gfw9"; depends=[httr lifecycle magrittr rlang selectr tibble xml2]; }; ··· 15553 15588 ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; 15554 15589 rym = derive2 { name="rym"; version="1.0.5"; sha256="0brh8hm3x21swypnzj3bbbf7njgarsj4804fp5lcqlr4nadzx26y"; depends=[httr purrr stringr]; }; 15555 15590 ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; 15591 + rytstat = derive2 { name="rytstat"; version="0.1.0"; sha256="1wwqhdcb2l8sbn9xps4my0haqkg6d9dky49p0pm9q6sakgy53ayx"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; 15556 15592 rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; 15557 15593 rzmq = derive2 { name="rzmq"; version="0.9.8"; sha256="0lqwxi9ckydvrmmkwy3mhqd28gyajijznbbb4j23mnmi0aspwnl1"; depends=[]; }; 15558 15594 s2 = derive2 { name="s2"; version="1.0.7"; sha256="0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410"; depends=[Rcpp wk]; }; ··· 15604 15640 salso = derive2 { name="salso"; version="0.2.23"; sha256="19b3g37nm3nj255vpjgbzmwvyzybb8a3wff9qax6nw5fx9hb6zas"; depends=[]; }; 15605 15641 salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; 15606 15642 sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; 15607 - samc = derive2 { name="samc"; version="1.4.1"; sha256="0g6fqwyfjsb3pdws9vb2mnqv2967spiqzwin6bw94az1shmvpdnc"; depends=[gdistance Matrix raster Rcpp RcppEigen]; }; 15643 + samc = derive2 { name="samc"; version="2.0.0"; sha256="1xpk0ivcdydy1vsz1qxjx0p6sarz0ry8nh8wa1ca7nvl6pkq5r7j"; depends=[gdistance Matrix raster Rcpp RcppEigen RcppThread]; }; 15608 15644 samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; }; 15609 15645 sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; 15610 15646 sampleSelection = derive2 { name="sampleSelection"; version="1.2-12"; sha256="1am1w8c24f27gcdmrk3b4wp9j5awghnw9s9lphnkm10pl31881dy"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; 15647 + sampleVADIR = derive2 { name="sampleVADIR"; version="1.0.0"; sha256="1fxqjbczw5wpdx19rmlc2jwsk8nlkbbpdagn9z1xkfba3xli9f1w"; depends=[lubridate splitstackshape]; }; 15611 15648 sampler = derive2 { name="sampler"; version="0.2.4"; sha256="12jjx3ci1yss8dj64bjdmz73cyjfkwb7b9zk4zm48lqv78k6wlv7"; depends=[dplyr purrr reshape tidyr]; }; 15612 15649 samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; }; 15613 15650 samplesize4surveys = derive2 { name="samplesize4surveys"; version="4.1.1"; sha256="0v332xb4vkkjr3nwf3231aqgzsj7mqld9ffkla1nj52lxay2ji75"; depends=[dplyr magrittr TeachingSampling timeDate]; }; ··· 15683 15720 scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; 15684 15721 scSorter = derive2 { name="scSorter"; version="0.0.2"; sha256="04gnw9i4j8sk3fjh74idk0d6wflw17z1c3afz6wir5pc4y3lzn2j"; depends=[]; }; 15685 15722 scTenifoldKnk = derive2 { name="scTenifoldKnk"; version="1.0.1"; sha256="0d6gcr0qrm7mc36n2lihl7bq9vj40dblqswznbwvxichv8kc5svz"; depends=[MASS Matrix pbapply RSpectra scTenifoldNet]; }; 15686 - scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.2.4"; sha256="1gnikgfaf74d4sjdjjl34lwy9lcws4haff6x59x8bnjj7k7q219q"; depends=[MASS Matrix pbapply RSpectra]; }; 15723 + scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.3"; sha256="02ijwi487pfwhgdmpals2snx5dvdnkbkyp9g1yldw12a9v8rz8q7"; depends=[MASS Matrix pbapply RhpcBLASctl RSpectra]; }; 15687 15724 scUtils = derive2 { name="scUtils"; version="0.1.0"; sha256="09c4vwrjj4r0nfcwb8q0a243m0v5wa3qisdlcy7ik58gyxp02zv8"; depends=[assertthat dplyr ggplot2 Matrix scales viridis viridisLite]; }; 15688 15725 scaffolder = derive2 { name="scaffolder"; version="0.0.1"; sha256="1va1mlhqv5qn0hm81ypdir9llr68222qxjp3jink69zpaskfbdib"; depends=[reticulate]; }; 15689 15726 scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; ··· 15698 15735 scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; 15699 15736 scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; 15700 15737 scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; 15738 + scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.1.0"; sha256="1xs1rzi6j3yrj4j4yjhlj24nkxdnc4xgpwrdv9p0bzwc4gcarw1j"; depends=[htmlwidgets]; }; 15701 15739 scattermore = derive2 { name="scattermore"; version="0.7"; sha256="18nzlprmphkvjg946h10h2qq0wbkmv2526p8di6k2xl4gccq0qpk"; depends=[ggplot2 scales]; }; 15702 15740 scatterpie = derive2 { name="scatterpie"; version="0.1.7"; sha256="1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z"; depends=[ggforce ggfun ggplot2 rlang tidyr]; }; 15703 15741 scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; }; ··· 15905 15943 servr = derive2 { name="servr"; version="0.23"; sha256="1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4"; depends=[httpuv jsonlite mime xfun]; }; 15906 15944 sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; 15907 15945 session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; 15908 - sessioninfo = derive2 { name="sessioninfo"; version="1.1.1"; sha256="0j5f3l58fynxx3v0w62vqpii7miabszgljpja36xx9s8hikh8sqn"; depends=[cli withr]; }; 15946 + sessioninfo = derive2 { name="sessioninfo"; version="1.2.0"; sha256="1pq7ihd1qxigbdj7r9y00vpi20r4jjcr8b9h33hgjfixmlwggsxd"; depends=[cli]; }; 15909 15947 set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; 15910 15948 set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; }; 15911 15949 setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; ··· 15918 15956 sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; 15919 15957 sfaR = derive2 { name="sfaR"; version="0.1.0"; sha256="1lgazgj6xfg0syspw6wzmd4xyczydhdgghpaf9kgrqvqfkaqcf8p"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; 15920 15958 sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; 15921 - sfarrow = derive2 { name="sfarrow"; version="0.4.0"; sha256="0c03dq6m2yc0dfj2kmqlxdxjv94fkhr7v4dlaw1jxha0fpd1p1l6"; depends=[arrow dplyr jsonlite sf]; }; 15959 + sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; 15922 15960 sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; 15923 15961 sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; 15924 15962 sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; ··· 15940 15978 sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; 15941 15979 sgmcmc = derive2 { name="sgmcmc"; version="0.2.5"; sha256="0lq79c7i6bklh8c63wx3k6h9mk8s1abbr0hc41drcm96bbbg0aal"; depends=[reticulate tensorflow]; }; 15942 15980 sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; 15981 + sgo = derive2 { name="sgo"; version="0.9.0"; sha256="0rpxsc59skf1zphnvin5hjmz858d47xl3sq0z83zkka9h4fiwsp6"; depends=[]; }; 15943 15982 sgof = derive2 { name="sgof"; version="2.3.2"; sha256="020kc6h9iw4qhb9pdi7wk8vcy54dp10x0z3nlq3gwwbj1l9izc44"; depends=[poibin]; }; 15944 15983 sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; 15945 15984 sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; ··· 15973 16012 shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; 15974 16013 shiny_pwa = derive2 { name="shiny.pwa"; version="0.2.1"; sha256="120wqqy7fh7nm2bib3dq02a92jb3lykkl7qayiw6bnax8sdr18yw"; depends=[htmltools readr shiny urltools]; }; 15975 16014 shiny_react = derive2 { name="shiny.react"; version="0.2.3"; sha256="19k1rvq47s56cipxqbalgzmhwdxw3ic5bd9qqnvsw75ynbhpa959"; depends=[glue htmltools jsonlite logger rlang shiny]; }; 15976 - shiny_reglog = derive2 { name="shiny.reglog"; version="0.2.0.2"; sha256="09zj7qivfb34bqghj3qa0ksw3k8bpd01bzs99rvds746gc08njj4"; depends=[DBI dbplyr dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; 16015 + shiny_reglog = derive2 { name="shiny.reglog"; version="0.4.1"; sha256="1azhcz2ffrc82f9yfqfivb9m2alanl4wx1i8q8pyympqw09gg5zy"; depends=[DBI dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; 15977 16016 shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; 15978 16017 shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.2"; sha256="0ndjp8c3c8kci8rzhj4bg1zpgwzcilgbjplx0sr2hii87lpi0v2j"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; 15979 16018 shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; ··· 15986 16025 shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; 15987 16026 shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; 15988 16027 shinyFiles = derive2 { name="shinyFiles"; version="0.9.0"; sha256="0rsijlx16vd74r7bd8s9zipy71kgpw19v9s85kxj5bmwc6njmbai"; depends=[fs htmltools jsonlite shiny tibble]; }; 16028 + shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.6"; sha256="0q3yjkb7gnf15l2bh5wp1y1z6rn6apxd731wr8b82qbsdm68q5sm"; depends=[htmltools jsonlite shiny shinyjs]; }; 15989 16029 shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; 15990 16030 shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; 15991 16031 shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; ··· 16038 16078 shinypanel = derive2 { name="shinypanel"; version="0.1.4"; sha256="0hdfpjfhyqj7ym3bwg5xmhnawl98q7mfl2wj950ysajqi88l91pr"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; 16039 16079 shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; 16040 16080 shinypivottabler = derive2 { name="shinypivottabler"; version="1.0"; sha256="04mdzd0j9y1w0iifpgd870haj5b9q8sdmkj4lws0svhkli3ym097"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; 16081 + shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; 16041 16082 shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; }; 16042 16083 shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; 16043 16084 shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; ··· 16062 16103 shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; 16063 16104 shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; 16064 16105 shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; 16065 - shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.2"; sha256="0bzjr1mgz75k81ni149wg2mcrdvig9h4mcm3n2f7l98c3rizvk24"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; 16106 + shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.3"; sha256="130x6rpvrng25l6mx3fskcvv9jyjzbvl6da35bvsw2j88qd3fra2"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; 16066 16107 shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; 16067 16108 shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; 16068 16109 shutterplot = derive2 { name="shutterplot"; version="0.1.0"; sha256="129jv20m0dinb07lwiz9fxv4z7sxshcmjab2g0p5vrv8jlp9a0yv"; depends=[]; }; ··· 16084 16125 sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; 16085 16126 sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; 16086 16127 sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; 16087 - sigminer = derive2 { name="sigminer"; version="2.1.0"; sha256="16vd0ian51ny0yaa6v36klalr5grva368g26cn4y8ddicgrj2rhv"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; 16128 + sigminer = derive2 { name="sigminer"; version="2.1.1"; sha256="1fk2z6ry7agbwd8vjc3k9lgsv7qr2m75q9c02cy4742yflcayvsz"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; 16088 16129 sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; 16089 16130 signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; 16090 16131 signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; ··· 16142 16183 simplecolors = derive2 { name="simplecolors"; version="0.1.1"; sha256="1m0lrvkjqjqq7kynjl8j1cn7kqzfjx6gzgjpjk1gvar2g4ip0a8h"; depends=[colorspace dplyr forcats ggplot2 magrittr stringr]; }; 16143 16184 simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; 16144 16185 simplegraphdb = derive2 { name="simplegraphdb"; version="2021.03.10"; sha256="0573hrv23nimmf3d8dgdynii79h84a3mfr4xxk3cggxhsxpfmb2i"; depends=[DBI rjson RSQLite]; }; 16186 + simplermarkdown = derive2 { name="simplermarkdown"; version="0.0.3"; sha256="1670x6fxqgdz471n12b9smfqrfpz282vcax1jsssficgw748lyw4"; depends=[rjson]; }; 16145 16187 simplevis = derive2 { name="simplevis"; version="4.6.0"; sha256="0mfcfin3hq4aai0mc6drmw9asd02xc74pbvyvy1yr3fpf9888nsd"; depends=[dplyr DT forcats ggplot2 htmltools janitor kimisc leaflet leaflet_extras leafpop lubridate magrittr plotly purrr readr rlang scales sf shiny shinycssloaders snakecase stringr tibble tidyr tidyselect viridis]; }; 16146 16188 simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; 16147 16189 simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; ··· 16207 16249 sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; 16208 16250 skpr = derive2 { name="skpr"; version="1.0.0"; sha256="1p8wwan29jgc4p9pk0x19wwqnvy012bhci6s49za1wzvzxh6w7ia"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; 16209 16251 skynet = derive2 { name="skynet"; version="1.4.0"; sha256="1ir8sw99fvdy8zp7ncgdnggr8hv1ph21kvdi9my42vlsh2fqi5ja"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; }; 16252 + skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; 16210 16253 slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; 16211 16254 slam = derive2 { name="slam"; version="0.1-48"; sha256="1ppsvkph4v1dffxgp12a4wnr9arj7pkmh4qv0and3f6nbz9k42qa"; depends=[]; }; 16212 16255 slanter = derive2 { name="slanter"; version="0.2-0"; sha256="024dkman0r5qzc215gw0ds932vdaz8krrhv64fjw9pni37ixc3mf"; depends=[Matrix pheatmap pracma]; }; ··· 16267 16310 smoothSurv = derive2 { name="smoothSurv"; version="2.3"; sha256="0rxgps184hl49g8gpa7hjvdl2i01qkghmvlv8blwwr9rfk19aq1s"; depends=[survival]; }; 16268 16311 smoothedLasso = derive2 { name="smoothedLasso"; version="1.6"; sha256="0007i40a12jgavgd95fbpiil1s331qd05ww6v19l49lbnlk3ldxg"; depends=[Matrix Rdpack]; }; 16269 16312 smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; 16313 + smoothic = derive2 { name="smoothic"; version="0.1.0"; sha256="11bi3xyw1ia1p8hqfz4rcp1qxz0lkpwl1yc8m12819mgsliswgn8"; depends=[]; }; 16270 16314 smoothie = derive2 { name="smoothie"; version="1.0-3"; sha256="1ari4av4vsydaxg56vsfifc50kxsqy8xlxl7by32capc6pcjwvq8"; depends=[]; }; 16271 16315 smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; 16272 16316 smoothr = derive2 { name="smoothr"; version="0.2.2"; sha256="1z1ha67b4fw6mkmvs2g80mc1id215rkzvz7bpzk1jdp6fibqpr2b"; depends=[raster rgeos sf units]; }; 16273 16317 smoothtail = derive2 { name="smoothtail"; version="2.0.5"; sha256="1sqkwniz9m03k23nba9ndmdm0g03mdshzm8risr6wz98jcqjilrk"; depends=[logcondens]; }; 16274 16318 smoots = derive2 { name="smoots"; version="1.1.3"; sha256="09a3f8prplzl7bsmfxbgni2bx4z3xsmx9sdr7jzmx3janlhlf6c5"; depends=[future future_apply progress progressr Rcpp RcppArmadillo]; }; 16275 16319 smotefamily = derive2 { name="smotefamily"; version="1.3.1"; sha256="062yps71bqnyff1hzqb7yvigvqg2lnc24r9gfp8m3zhvmyprk3cp"; depends=[dbscan FNN igraph]; }; 16276 - smovie = derive2 { name="smovie"; version="1.1.3"; sha256="0gani6ywckvp4p72drl87vlvwcszzn5n71iqrwdgnyyr6r69ax7b"; depends=[rpanel]; }; 16320 + smovie = derive2 { name="smovie"; version="1.1.4"; sha256="12l24ilkgpsxq4gs4yp8g2cdws6az0x06s5yzi1qqkym8n86a4f3"; depends=[rpanel]; }; 16277 16321 smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; 16278 16322 sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; 16279 16323 smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; ··· 16290 16334 snht = derive2 { name="snht"; version="1.0.5"; sha256="0k8w1118b2qrf5zfi902gm6zf7b1mwv7py7wg57vsibh2r2ra8ah"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; }; 16291 16335 snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; 16292 16336 snotelr = derive2 { name="snotelr"; version="1.0.4"; sha256="0ni2hmlbxvhs9mwbf679yysd9gkj4fknfdwi7a6b32jsf0v6mg92"; depends=[httr magrittr memoise RSelenium rvest shiny wdman xml2]; }; 16293 - snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; }; 16337 + snow = derive2 { name="snow"; version="0.4-4"; sha256="1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44"; depends=[]; }; 16294 16338 snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; }; 16295 16339 snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; 16296 16340 snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; ··· 16310 16354 social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; 16311 16355 socialh = derive2 { name="socialh"; version="0.1.0"; sha256="03ms1plsrs7lhxh4fb2kwrhayly4f53q61czzycjmbfp83fg1xmj"; depends=[data_table dplyr magrittr]; }; 16312 16356 socialmixr = derive2 { name="socialmixr"; version="0.1.8"; sha256="0zhinhjv1ablhdyz41a1ii1s3mzqg8f2ns7xcjnlwa9fx364x5a2"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; 16313 - sociome = derive2 { name="sociome"; version="2.0.0"; sha256="1r49v4ajjv2v10478bmbjv3hnyzi9srw6q04x4gl0fnqch45hn6p"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; 16357 + sociome = derive2 { name="sociome"; version="2.1.0"; sha256="0dh20mx3jbyy2bkrdz1w0sihdfhpfvc5p0i0x9q0azcpln51rv5k"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; 16314 16358 socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; 16315 16359 sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; 16316 - sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; 16360 + sodium = derive2 { name="sodium"; version="1.2.0"; sha256="0x4jb3cf1nv1spz1jc9xp8hly2b4a7nj48xr4s33jnfcpdjkmn5q"; depends=[]; }; 16317 16361 sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; 16318 16362 softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; 16319 16363 softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; 16320 16364 soilDB = derive2 { name="soilDB"; version="2.6.5"; sha256="1h5zmcv8vqq05svz3wnfrg2wszlzw285s6imd32ik10laidlz4yd"; depends=[aqp curl data_table DBI plyr raster reshape2 sp xml2]; }; 16321 16365 soilassessment = derive2 { name="soilassessment"; version="0.2.1"; sha256="14hqwxpqb19g5r7abar40kprfilzxi24mg083gypvxzs48pb6gn8"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP Hmisc kernlab maptools nnet qrnn quantregForest randomForest ranger raster rgdal rpart soiltexture sp]; }; 16366 + soilhypfit = derive2 { name="soilhypfit"; version="0.1-3"; sha256="0vnm54dy0h28r4wbb3rn66cii9j0fd900q70nlriwl43gcc33q3j"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; 16322 16367 soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; 16323 16368 soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; 16324 16369 sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; ··· 16373 16418 spMC = derive2 { name="spMC"; version="0.3.11"; sha256="06lfc4hk5kn1f1fak0ckpnad0c5b0yxb20cnm0j0hyxpv0qbxhj1"; depends=[]; }; 16374 16419 spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; 16375 16420 spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; 16376 - spNetwork = derive2 { name="spNetwork"; version="0.2.0"; sha256="1bw6nsg27j6sh8x616fgsvjlqp3k5hjfiyh93r9504a74j0ja5fn"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; 16421 + spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; 16377 16422 spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; 16378 16423 spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; 16379 16424 spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; ··· 16395 16440 spamtree = derive2 { name="spamtree"; version="0.2.1"; sha256="06j0qjhdjgpbad82gq6zgp6vbh6rdpnbpnkj0836lmi1180x7fay"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; 16396 16441 spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; 16397 16442 spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; 16398 - spant = derive2 { name="spant"; version="1.14.0"; sha256="1l5n8f1zpw8km03i783qisg2c1mnl300qp74rrmysp8chj04w628"; depends=[abind complexplus fields foreach irlba jsonlite magrittr MASS matrixcalc minpack_lm mmand nloptr nnls numDeriv plyr pracma ptw readr RNifti RNiftyReg signal smoother stringr tibble]; }; 16443 + spant = derive2 { name="spant"; version="1.15.0"; sha256="1kr5ainz31r8fl052id8i4v9ybswp7mk5jxhh7pim9df3ndxfsi5"; depends=[abind complexplus fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; 16399 16444 sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; 16400 16445 spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; 16401 16446 sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; ··· 16420 16465 sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; 16421 16466 sparseLRMatrix = derive2 { name="sparseLRMatrix"; version="0.1.0"; sha256="0b1qczhzbr67k5ayj7avmibyzvfg4jc67mb2m2lvifsf9wrqlqxb"; depends=[Matrix RSpectra]; }; 16422 16467 sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; 16423 - sparseMVN = derive2 { name="sparseMVN"; version="0.2.1.1"; sha256="0ikh1i4vid6r4sx9pdjqc5wbh4xdj966mr0b7jb1vjw18wrzad8q"; depends=[Matrix]; }; 16468 + sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; 16424 16469 sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; 16425 16470 sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; 16426 16471 sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; ··· 16499 16544 spectre = derive2 { name="spectre"; version="1.0.2"; sha256="1n5z7970pzhavdf7qhxsb7gzz8dsrwa1pwyxf8n6sxvmdbk8v2z1"; depends=[ggplot2 Rcpp RcppProgress testthat]; }; 16500 16545 spectrolab = derive2 { name="spectrolab"; version="0.0.16"; sha256="0qfzkf8dm5r5sbadipcqvfs1965l365g9000rgl9713v9lmshmy6"; depends=[RColorBrewer shiny shinyjs]; }; 16501 16546 sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; 16502 - speech = derive2 { name="speech"; version="0.1.3"; sha256="0ff66fc6pvlvwy6n7dp5jkzjbbgc43rwbnk5khq7xbq9zfpfcjgj"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tabulizer tibble tidyr tm]; }; 16547 + speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; 16503 16548 speedglm = derive2 { name="speedglm"; version="0.3-3"; sha256="0f37w4lj8dpcg1sfkd7cv6qpdkanmb97mnd8zih2fxzv8bpd0rfh"; depends=[MASS Matrix]; }; 16549 + speedycode = derive2 { name="speedycode"; version="0.1.0"; sha256="1bmhc7x8smjs3d880ah9h6phb3igrd95b31wyg3pgzdb6lh8xa13"; depends=[dplyr purrr stringr]; }; 16504 16550 spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; 16505 16551 speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; 16506 16552 spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; ··· 16584 16630 sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; 16585 16631 sps = derive2 { name="sps"; version="0.1.1"; sha256="1vrhdpmm1da793qvj1k4rda9ssg4k094j2vy9dxhz2zcnillqpl9"; depends=[]; }; 16586 16632 spsComps = derive2 { name="spsComps"; version="0.3.1"; sha256="0wkbxpav823kczqqk8kmax21zpi99bx2gisnqmmqvbb7lsjdlram"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; 16587 - spsUtil = derive2 { name="spsUtil"; version="0.2.0"; sha256="1s9x4fkdc2l0wjl00wcw94xbpqnda7bdfrqdrwzkq27364dx0m35"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; 16633 + spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; 16588 16634 spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; 16589 16635 spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; 16590 16636 spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; ··· 16604 16650 sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; 16605 16651 sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; }; 16606 16652 squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; 16607 - squashinformr = derive2 { name="squashinformr"; version="0.2.4"; sha256="1b70vbi4q17hz5w5f9x3d7sw43jcpkxd3jq43ic7i0ll91i80ami"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; 16653 + squashinformr = derive2 { name="squashinformr"; version="0.2.5"; sha256="1403h52il9kyf16cm44lvib8sgdq0njrqsci8ng5ngryg2h2lacc"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; 16608 16654 squeezy = derive2 { name="squeezy"; version="1.0"; sha256="0ihlgdnfissi0kaw7gwiihrp7kw5447kbwnb7rb1l2jacs60v41n"; depends=[glmnet Matrix multiridge mvtnorm]; }; 16609 16655 squid = derive2 { name="squid"; version="0.1.2"; sha256="1sf7q9pp68inr4ikaxm51f31gwxq9ixrsismrnnsby3agq6nsmkb"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; 16610 16656 sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; 16611 - srcr = derive2 { name="srcr"; version="1.0.0"; sha256="1wk18a1c0pf6mq3k78qi7fhivahx2q22rcs2ajsdj73b0993wnbm"; depends=[DBI dplyr jsonlite]; }; 16657 + srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; 16612 16658 sregsurvey = derive2 { name="sregsurvey"; version="0.1.0"; sha256="0bsiwhp6c8kv2kgdpwiafydgr1cia5y3c786qgil1b9wnswzxnj5"; depends=[caret dplyr gamlss gamlss_dist TeachingSampling]; }; 16613 16659 srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; 16614 16660 srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; ··· 16621 16667 ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; 16622 16668 sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; 16623 16669 ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; 16624 - ssdtools = derive2 { name="ssdtools"; version="0.3.6"; sha256="0np59vj37cdq413g77girc03n6gmjfjgln3mvqb1xb7x005ziqji"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; 16670 + ssdtools = derive2 { name="ssdtools"; version="0.3.7"; sha256="1mxkbf7skxg073nmy195c78fh8mimxnycnlx921y3pb9vrplsn2a"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; 16625 16671 sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; 16626 16672 ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; 16627 16673 ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ··· 16684 16730 starter = derive2 { name="starter"; version="0.1.6"; sha256="1f7vmbiynaflbjd1pr8g1zmgxlkgyi1hb33xbah503qrz5iclfpf"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; 16685 16731 startup = derive2 { name="startup"; version="0.15.0"; sha256="05a5drjzmc969yn5y62gy1ja469nqrcbicycvjmlgrrfcj7918mi"; depends=[]; }; 16686 16732 startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; 16733 + starvars = derive2 { name="starvars"; version="1.1.8"; sha256="0l081xw1ad7b4qgdr6wywhqvq4icrpcid5khwck58i1v95qsq3is"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; 16687 16734 starvz = derive2 { name="starvz"; version="0.6.0"; sha256="0qmgijlj00rqkf47m06zf8p6gm94fylm7wamrip1zmf23mr7fhvk"; depends=[arrow BH car data_tree dplyr flexmix ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; 16688 16735 starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; 16689 16736 stat_extend = derive2 { name="stat.extend"; version="0.1.4"; sha256="1m3bjwgb0g0c445xy9b29yibnf8ldjfnyd0i519dxnh31b6k8vy9"; depends=[sets]; }; ··· 16712 16759 statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; 16713 16760 statpsych = derive2 { name="statpsych"; version="1.0.0"; sha256="0rakzsbafhp5xps9bbb4pljv4c49ij1rwz64z0q5jjglc95kw55s"; depends=[mathjaxr Rdpack]; }; 16714 16761 statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; 16762 + stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; 16715 16763 statsExpressions = derive2 { name="statsExpressions"; version="1.2.0"; sha256="0d95iv3k260mzsw3krp8vggz8xx7n1l5s8jdhiq1z4vr8mz41gcd"; depends=[BayesFactor correlation datawizard dplyr effectsize insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; 16716 16764 statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; 16717 16765 statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; ··· 16729 16777 stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; 16730 16778 stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; 16731 16779 stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; 16780 + stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; 16732 16781 stepp = derive2 { name="stepp"; version="3.2.2"; sha256="1iyj1f9gzn44xllhm9y1j0ynfz4q48d2l8ic4mjvzc3p4z8cnpmz"; depends=[car rstudioapi scales survival]; }; 16733 16782 steps = derive2 { name="steps"; version="1.2.1"; sha256="04n5m7a5yp3karhiwgcl6fzfp85iad2xymdwp1kyqbagx2acyrka"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; 16734 16783 stevedata = derive2 { name="stevedata"; version="0.5.0"; sha256="1cfq1fdyv8cxk4h1r7dgbypia3ih31svw3r024bkfzw986jqvzk0"; depends=[]; }; 16735 - stevedore = derive2 { name="stevedore"; version="0.9.3"; sha256="00zs2bl5h40rwbhnynjw2jbxlixjnk14rxn9chypqg5zgx9pqg2s"; depends=[crayon curl jsonlite yaml]; }; 16736 - stevemisc = derive2 { name="stevemisc"; version="1.2.0"; sha256="0dxql12ci68vm4dz839ds7ifz9g5p4gc7lqxpw98i37yabhqmpz5"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble]; }; 16784 + stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; 16785 + stevemisc = derive2 { name="stevemisc"; version="1.3.0"; sha256="0dkmq6510r36pihj2g8c4iya5j3sbsnq9gp5i72dqj9fwsx242ca"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; 16737 16786 stevetemplates = derive2 { name="stevetemplates"; version="0.6.0"; sha256="1xwf4c2g5n4av19xxj1vm3gv2200kqnzvxh7qzkbgs8b6s9ivly7"; depends=[rmarkdown]; }; 16738 16787 stfit = derive2 { name="stfit"; version="0.99.8"; sha256="0js09v04ik5m3d9iz9waq0yigvg2g6n75m4zm5dc0nz3yr1irb88"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; 16739 16788 stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; ··· 16763 16812 stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; 16764 16813 stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; 16765 16814 stokes = derive2 { name="stokes"; version="1.0-8"; sha256="0hdw7yyakbn78prxyydv09j2k3xj2fwy0v2nxw3n7mm2qgkjggg9"; depends=[magrittr mathjaxr partitions permutations spray]; }; 16766 - stopwords = derive2 { name="stopwords"; version="2.2"; sha256="1f862y30c4r0phamlp7shzkpxg0vh3i410xy0336w310hv3wqsxn"; depends=[ISOcodes]; }; 16815 + stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; 16767 16816 storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; 16768 16817 storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; 16769 16818 stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; 16770 - stplanr = derive2 { name="stplanr"; version="0.8.4"; sha256="0mkkaz47a3cfbi4jqm930j8dyg3y5j9njqp9za121arsyv0jp3zf"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; 16771 16819 stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; 16772 16820 stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; }; 16773 16821 str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; ··· 16833 16881 subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; }; 16834 16882 subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; 16835 16883 subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; 16836 - subtee = derive2 { name="subtee"; version="0.3-7.1"; sha256="0cvqpmwkw6bzygvkd3842sikfm3lbrhch317pc3n4z0ffz3w2xxn"; depends=[ggplot2 MASS matrixStats survival]; }; 16884 + subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; }; 16837 16885 subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; 16838 16886 sudachir = derive2 { name="sudachir"; version="0.1.0"; sha256="09ry00c3yhrz8fiyxdxgj9r3x7kldsl6fv35mmi5ysc2549kbcfb"; depends=[cli dplyr glue magrittr purrr reticulate rlang tibble tidyselect]; }; 16839 16887 suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; ··· 16856 16904 superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; 16857 16905 superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; 16858 16906 superml = derive2 { name="superml"; version="0.5.3"; sha256="1k0hcjspv0q6wg0yarvgjs7ql7d587nijicmz3lfhpph2n3hghvb"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; 16907 + supernova = derive2 { name="supernova"; version="2.4.4"; sha256="122srb8mbpgywcl8ggv33dlpl64489r3r3mcsrpvly29c2i7qx4f"; depends=[backports cli ggplot2 magrittr pillar purrr rlang stringr tibble vctrs]; }; 16859 16908 superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; 16860 16909 supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; 16861 16910 suppdata = derive2 { name="suppdata"; version="1.1-7"; sha256="1kga3jczxa9wjazl7gcks2p521y7c2y1518v7wk48sm7yri6sm4p"; depends=[httr jsonlite rcrossref xml2]; }; ··· 17012 17061 systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; }; 17013 17062 syt = derive2 { name="syt"; version="0.2.0"; sha256="1pfl3d6laa075z88fqgjnrsn21lgjsak0bjdws09b9knc0ifgfsz"; depends=[Matrix partitions]; }; 17014 17063 syuzhet = derive2 { name="syuzhet"; version="1.0.6"; sha256="16iccqdbw02iw82nah6kwz3gwfghi864j2y698n4b9dyc386ijzv"; depends=[dplyr dtt NLP rlang textshape tidyr zoo]; }; 17015 - tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.1"; sha256="019b96ny4ja2x3vl9sps2dw8shgwvqh19ajsmxc9dc5pv2nx49cs"; depends=[dplyr R_utils survival]; }; 17064 + tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.2"; sha256="01lmjhzcchps8fm15wiq7gm3mf0s99fqzghbwarsldj7ywvz7adh"; depends=[dplyr R_utils survival]; }; 17016 17065 tRnslate = derive2 { name="tRnslate"; version="0.0.3"; sha256="0sm0cqxylsxmnhqs1c8w81d6q2sj7nmm86mds59kiyspy9m67sbc"; depends=[]; }; 17017 17066 tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.7"; sha256="1j06rc5s6jpz8i116m98ygc75sx6lk8jd9gw6fb8q342mbbmqh8h"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; 17018 17067 tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; ··· 17025 17074 table_glue = derive2 { name="table.glue"; version="0.0.2"; sha256="01yskmc604jdy6givddm0nhr9ylf7p68v2xz1p2mqylhws1lszph"; depends=[glue stringi]; }; 17026 17075 table1 = derive2 { name="table1"; version="1.4.2"; sha256="1cw85nj6w9fk66wjbyz08ya6g027cfj3brb0sx7ar0n7zyc8rhb4"; depends=[Formula htmltools knitr yaml]; }; 17027 17076 table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; 17077 + tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; 17028 17078 tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; 17029 17079 tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; 17030 17080 tableone = derive2 { name="tableone"; version="0.13.0"; sha256="0ihk29gcbqvvif2y8aalgnpq8y87irrp8z6ik4iaxh2xb6ksawqw"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; ··· 17042 17092 tabularaster = derive2 { name="tabularaster"; version="0.7.0"; sha256="061nc82svcz37lvwsx549rn6s2q6x75wjs0j9k8zcvlzr5wyyfgi"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; 17043 17093 tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; 17044 17094 tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; 17045 - tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; }; 17046 - tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; }; 17047 17095 tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; 17048 - tabxplor = derive2 { name="tabxplor"; version="1.0.1"; sha256="0n2hk0b288b2bqfhqv1yps9n150aml7vmkr6ic7cffc95dcvxqss"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; 17096 + tabxplor = derive2 { name="tabxplor"; version="1.0.2"; sha256="0gwnw4psgz5byfrpvm3s5bfc13fwmw0wh8fafrr8rpbwm8gy33fy"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; 17049 17097 tacmagic = derive2 { name="tacmagic"; version="0.3.1"; sha256="1rayyavjppi5dbcmb4yb2nf85ch2li766sdllfsirb19bb3d4c2d"; depends=[pracma R_matlab]; }; 17050 17098 tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; 17051 17099 tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; ··· 17059 17107 tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.0"; sha256="08whj66nf3idqvjnzgni5iqyqakbdwvrapdixx0zff7q8qbkar8z"; depends=[dplyr]; }; 17060 17108 tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; 17061 17109 tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; 17062 - tarchetypes = derive2 { name="tarchetypes"; version="0.3.1"; sha256="05m27inf7sbf96z3qfaj1659pwifysav85gp2r9w8jk45da6wm49"; depends=[digest fs rlang targets tibble tidyselect vctrs withr]; }; 17063 - targets = derive2 { name="targets"; version="0.8.0"; sha256="0lcn4la6qh3ljks8s7q9il2hm2lzfhf5wzi5igxs9d0xlqxr2r8n"; depends=[callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; 17110 + tarchetypes = derive2 { name="tarchetypes"; version="0.3.2"; sha256="0nwxzda3nbb3m7hjyffdizdgjspzw9zmmz26gxzkgvgpz820g4p9"; depends=[digest fs rlang targets tibble tidyselect vctrs withr]; }; 17111 + targeted = derive2 { name="targeted"; version="0.2.0"; sha256="0xcw2xcvp4yz37djl2m7fwr61hfrarbrr05rcnbqkjs3y4q5p99g"; depends=[data_table digest futile_logger future_apply lava optimx progressr Rcpp RcppArmadillo]; }; 17112 + targets = derive2 { name="targets"; version="0.8.1"; sha256="09qdb9v2wzklva3g7d3cxhl2720nsxc9qn5j7v731mgb7k2l5qv9"; depends=[callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; 17064 17113 tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; 17065 17114 tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; 17066 17115 tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; ··· 17091 17140 tcpl = derive2 { name="tcpl"; version="2.0.2"; sha256="0xic4jy8ldawmkvvwckiyy57ai5wif9yn7hyfndbxr6mvjl3rbbc"; depends=[data_table DBI numDeriv RColorBrewer RMySQL sqldf]; }; 17092 17141 tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; 17093 17142 tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; 17094 - td = derive2 { name="td"; version="0.0.4"; sha256="1wv34bn86rxm2ljwz9sdy4zdssjy7mwwk56y2civji34821119q6"; depends=[RcppSimdJson]; }; 17143 + td = derive2 { name="td"; version="0.0.5"; sha256="1wbhrz0yv1zv974xbz17k25dgb30afbhgk5xa8g928zfw9hbvrqa"; depends=[RcppSimdJson]; }; 17095 17144 tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; 17096 17145 tdaunif = derive2 { name="tdaunif"; version="0.1.0"; sha256="0a24lqiimp54fmj4zi7bakxral8ny60n25h9arwl6m00c7cn98pl"; depends=[]; }; 17097 17146 tdigest = derive2 { name="tdigest"; version="0.3.0"; sha256="17axsir4xig3vm3sc2gziy9n0p80b14vg52nwys23bzkfp0n63bm"; depends=[magrittr]; }; ··· 17151 17200 texreg = derive2 { name="texreg"; version="1.37.5"; sha256="0cb3kvxfi9k9g958fkb73cgqdxx3h9bz2cnaakic4wgrkv27mk2c"; depends=[httr]; }; 17152 17201 text = derive2 { name="text"; version="0.9.10"; sha256="1ramsv2pbg57yyxp5qjkls82gl5icda6f5116hr0w5s0w3jpajmj"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr parsnip purrr recipes reticulate rlang rsample stringr tibble tidyr tokenizers tune workflows yardstick]; }; 17153 17202 text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; 17154 - text2map = derive2 { name="text2map"; version="0.1.0"; sha256="1hr3wj9j86siixqa37kgjp21j3hrgk3afb9f88s5qxv2zrgjd37m"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; 17203 + text2map = derive2 { name="text2map"; version="0.1.1"; sha256="1kwbb9bp3ikksh24i69gclmanyqri3xn7rdbf1x93lhj7fxzbxrs"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; 17155 17204 text2sdg = derive2 { name="text2sdg"; version="0.1.0"; sha256="1a4ms4bha7h8mrbjzv5rb3s4gc1s5s22x5c97ss82r9pdb2ynvck"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; 17156 17205 text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; 17157 17206 text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; 17158 - textTinyR = derive2 { name="textTinyR"; version="1.1.5"; sha256="0j3qy3f66bv839ybw1g17g9ygr099fgmxgdpi5l7md6mv1b7nlgs"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; 17207 + textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; 17159 17208 textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; 17160 17209 textcat = derive2 { name="textcat"; version="1.0-7"; sha256="1m31alkzy13acgf4ahnzpbyazflhpmry369vqdvn5f86wcsls833"; depends=[slam tau]; }; 17161 17210 textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; ··· 17230 17279 tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; }; 17231 17280 tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; 17232 17281 tictoc = derive2 { name="tictoc"; version="1.0.1"; sha256="0197f540fkcxx5blx9jjnbvwgdnsdv55znmvgdizdp8pqhsib6m0"; depends=[]; }; 17233 - tidyBdE = derive2 { name="tidyBdE"; version="0.2.1"; sha256="1ygkr9l23s96l9x7wr12xbvgjkx9h9dljkl522a1j5x8l06yf6rc"; depends=[dplyr ggplot2 readr scales tibble]; }; 17282 + tidyBdE = derive2 { name="tidyBdE"; version="0.2.2"; sha256="041hwm73galrwjr4xnwzw5pzwp54g88w0464gmszrhs27lhhsr06"; depends=[dplyr ggplot2 readr scales tibble]; }; 17234 17283 tidyCpp = derive2 { name="tidyCpp"; version="0.0.5"; sha256="1ad10m831k0askr15yv6drmjh7rlg0py1ib8zmpsgj57v5s9wx3p"; depends=[]; }; 17235 17284 tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.3.1"; sha256="107bfyjakqfiimnwdyl2nhvx1fjpzv693akvi5l0cai6vjs007wj"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr purrr RColorBrewer rlang tibble tidyr viridis]; }; 17236 17285 tidyLPA = derive2 { name="tidyLPA"; version="1.0.8"; sha256="0jrvd92q20kzz83lid9vvdh0l3l1kbc4m77cim261gzra1p7w5y0"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; ··· 17279 17328 tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; 17280 17329 tidyselect = derive2 { name="tidyselect"; version="1.1.1"; sha256="0ss8mq05mwif64cj8zmrfx0ljgy3n0fvyv7f37782shr8rknmsqq"; depends=[ellipsis glue purrr rlang vctrs]; }; 17281 17330 tidyseurat = derive2 { name="tidyseurat"; version="0.3.0"; sha256="19f6046z1apmj11cp481rgv53mv25izwrpijy6s4xv5iqgpczb1n"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect]; }; 17331 + tidysmd = derive2 { name="tidysmd"; version="0.1.0"; sha256="0hbjcccs36i2cip6k56hv39awdxiljv322zlidlphkab7h95xiqc"; depends=[dplyr ellipsis glue purrr rlang smd tidyr tidyselect]; }; 17282 17332 tidysq = derive2 { name="tidysq"; version="1.1.2-1"; sha256="14gsm4hlm9vd85wpsgvk2w5hzmjayxs5ryh1j8zx2rsp98ypxrcm"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; 17283 17333 tidystats = derive2 { name="tidystats"; version="0.5"; sha256="0shvrrqd5c89d4pncbqa80kzzf9v31drm170hiivjscldphkk43h"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; 17334 + tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; 17284 17335 tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; 17285 17336 tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; 17286 17337 tidytable = derive2 { name="tidytable"; version="0.6.5"; sha256="1k8zl5hxbmizas8lhcp5nzqis7wikn9bbdjwjkc6cpzbpr722bd3"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; ··· 17337 17388 tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; 17338 17389 tinyarray = derive2 { name="tinyarray"; version="2.2.6"; sha256="0k99i0k1l5bjh08pgsxcanq74zw7hraawc679km6bblhh7yag2az"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; 17339 17390 tinylabels = derive2 { name="tinylabels"; version="0.2.1"; sha256="1gvj8l6lvhjxx6fpk825jdgwq34ikm4wmjicyn486spxjc81bw85"; depends=[]; }; 17340 - tinyscholar = derive2 { name="tinyscholar"; version="0.1.3"; sha256="0m2m6x7z6vx1b4cri3si445rw9dj66mh164q7an26d20y2yfk1cb"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; 17391 + tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; 17341 17392 tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; 17342 17393 tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; 17343 17394 tinytex = derive2 { name="tinytex"; version="0.34"; sha256="16z6v06pmvg02rbxkqyiidasg1dryy759zabnqjw6y85nybr618x"; depends=[xfun]; }; ··· 17403 17454 torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; }; 17404 17455 torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; 17405 17456 torchvision = derive2 { name="torchvision"; version="0.4.0"; sha256="0ndncq6qn54lp681khlhrwhywjnhi2wwirhysjhjyky6n2y378i4"; depends=[abind fs jpeg png rappdirs rlang torch zip]; }; 17406 - tosca = derive2 { name="tosca"; version="0.3-1"; sha256="0rxf3hh2kn1hg70mabv1xljw9v4rf0zr7phyxrb69mbphcwgdbj4"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; 17457 + tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; 17407 17458 tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; 17408 17459 tosr = derive2 { name="tosr"; version="0.1.0"; sha256="0ifqzddivb5xn1pm32hi0ys3lcb2ncv7ka8vl4pzmhq0yx05a7dg"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; 17409 17460 totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; ··· 17531 17582 trustOptim = derive2 { name="trustOptim"; version="0.8.7.3"; sha256="11cx90zq9987i7kc86kxbip6c75bmw51shlwq2x9ywhybzk8vxl8"; depends=[Matrix Rcpp RcppEigen]; }; 17532 17583 trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; 17533 17584 truthiness = derive2 { name="truthiness"; version="1.2.5"; sha256="0cssqlrilx2lglr2f53yysqgf604g4y326ijf8avlg6v5l6hlcr1"; depends=[dplyr DT emmeans ez forcats ggplot2 lme4 magrittr MASS ordinal purrr Rdpack readr rmarkdown tibble tidyr]; }; 17534 - tryCatchLog = derive2 { name="tryCatchLog"; version="1.2.4"; sha256="163mjif6819s53wn818siymmzc7n0xyd031s9c5n5irgs3dicfqj"; depends=[]; }; 17585 + tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; 17535 17586 ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; 17536 17587 tsBSS = derive2 { name="tsBSS"; version="1.0.0"; sha256="04nsbifc6zkilqifj6iwc0vf2z84y8wcbf8pndgkzi039kk6c385"; depends=[boot BSSprep forecast ICtest JADE Rcpp RcppArmadillo xts zoo]; }; 17537 17588 tsDyn = derive2 { name="tsDyn"; version="10-1.2"; sha256="0wwp18qaxljdy1zqww1qw9fa9ycvgwcf6j52cpx3v2f2177x7snc"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; ··· 17539 17590 tsPI = derive2 { name="tsPI"; version="1.0.3"; sha256="00p7275iq8qn6c6dpqjr5s9fzc0a6njqqi9gvqnh5s9lfx9mbk1v"; depends=[KFAS]; }; 17540 17591 tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; 17541 17592 tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-4"; sha256="07ymkrik1vwblcj5i0crihbrrxkrn8xjkap3lrzxy4vidgqalw3f"; depends=[]; }; 17542 - tsapp = derive2 { name="tsapp"; version="1.0.3"; sha256="1k2r8nnqbkgrhgdqg45y0svzqj521wl6vbss23yypwh1gcbddzn9"; depends=[fftwtools Matrix vars]; }; 17593 + tsapp = derive2 { name="tsapp"; version="1.0.4"; sha256="1x3f10rdg3ihq5cx6w1zyz3irv1wsgx6admz5qv3zwwlk0z6cwpx"; depends=[fftwtools hdm Matrix vars]; }; 17543 17594 tsbox = derive2 { name="tsbox"; version="0.3.1"; sha256="0vm6w6y9j2xgzappqjv6p40nl0lrbx3jzqjya9ahhapaklhb1hx3"; depends=[anytime data_table]; }; 17544 17595 tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; 17545 17596 tscopula = derive2 { name="tscopula"; version="0.2.1"; sha256="01zxwncr5azprcqm801qsa3v0c5hffycm4rxkqbxkaz11wvijhj3"; depends=[arfima FitAR FKF ltsa Matrix rvinecopulib xts zoo]; }; ··· 17558 17609 tsfngm = derive2 { name="tsfngm"; version="0.1.0"; sha256="1wx1imbvnc2bjvfal45zhgpz296fiydqffb0rk428xpjgp2dj6p7"; depends=[]; }; 17559 17610 tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; 17560 17611 tsiR = derive2 { name="tsiR"; version="0.4.3"; sha256="0xzcfdad1z8336wnsrk9sy21psd898wwkdkndq7dshqwp2rj2kxl"; depends=[ggplot2 kernlab reshape2]; }; 17561 - tsibble = derive2 { name="tsibble"; version="1.0.1"; sha256="07c412jkybv3bw056f6xd7f5f7231qgynck31r396dqnq6aydbgp"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; 17612 + tsibble = derive2 { name="tsibble"; version="1.1.0"; sha256="0m0hjm09y0ja3fb0nnss2692nkr9ck33n95kp6pmzglx389h7m19"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; 17562 17613 tsibbledata = derive2 { name="tsibbledata"; version="0.3.0"; sha256="1lz3kx0r8h9d1flp3j0fsllrk4d7m312pk4w4jdv5p4l5f2sqmnx"; depends=[tsibble]; }; 17563 17614 tsibbletalk = derive2 { name="tsibbletalk"; version="0.1.0"; sha256="14j1gpimvlz9cgxgl1n68ngkqx4w2ai92782ifrpvc57lqy9cs7v"; depends=[crosstalk dendextend dplyr glue lubridate plotly R6 rlang shiny tsibble vctrs]; }; 17564 17615 tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; ··· 17614 17665 tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; 17615 17666 tvmediation = derive2 { name="tvmediation"; version="1.0.0"; sha256="16djg3ibn1i68lzwby8242qa90347iq1i9ha4nyzacaf7mjd4ysl"; depends=[dplyr ggplot2 kedd locpol]; }; 17616 17667 tvthemes = derive2 { name="tvthemes"; version="1.1.1"; sha256="0j24hhpjab1220bmspd6a0pa2295gpyyrcxs1rxjnsr5vgn90fcq"; depends=[extrafont ggplot2 glue magick scales]; }; 17617 - twang = derive2 { name="twang"; version="2.4"; sha256="1d6ql65yymy02jq8xqkkfr5xc72scc2pm87346l9gzqc1sqfi523"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; 17668 + twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; 17618 17669 twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; 17619 17670 twangMediation = derive2 { name="twangMediation"; version="1.0"; sha256="0fkj94r6ca59kziknv8pgr4lklxyylfabvhkc3swbmg3cqix3jda"; depends=[gbm gridExtra lattice latticeExtra survey twang]; }; 17620 17671 twangRDC = derive2 { name="twangRDC"; version="1.0"; sha256="03z2c18nq6iwwb3si7wjc56npdyray3xsy6k6ifvbalib2ibv2f1"; depends=[data_table ggplot2 MatrixModels xgboost]; }; ··· 17639 17690 typed = derive2 { name="typed"; version="0.0.1"; sha256="096rzsxjdycf55jx33cxk1284rzb2vcxvp298y4q6v9x0w36php3"; depends=[waldo]; }; 17640 17691 typehint = derive2 { name="typehint"; version="0.1.2"; sha256="1n37qgphzf7lckrgfc8w3fq82zrjcvadx034qx8hrmbh4dynsl2s"; depends=[crayon rlist stringr]; }; 17641 17692 types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; 17642 - tzdb = derive2 { name="tzdb"; version="0.1.2"; sha256="1sl8nacx2i1h9vcvggiyzwd2zwvgrvfvsv3xa9072br62gkpay2c"; depends=[cpp11]; }; 17693 + tzdb = derive2 { name="tzdb"; version="0.2.0"; sha256="1afmav7s29fb5cd920h6vrzg9cvc4jsidfalxpvhlh1b8mfr0df3"; depends=[cpp11]; }; 17643 17694 tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; 17644 17695 u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; 17645 17696 uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; 17697 + uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; }; 17646 17698 uGMAR = derive2 { name="uGMAR"; version="3.4.0"; sha256="1n8ishsldfmqdbxz719gakrngrqr9bj7fzddq2ri86yj9krfgas1"; depends=[Brobdingnag gsl pbapply]; }; 17647 17699 uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; 17648 17700 uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; ··· 17713 17765 untb = derive2 { name="untb"; version="1.7-4"; sha256="1i7m4vfslsix98dwx4jlrsldm7fhhfp25gr7aapcxqxms7ryaby6"; depends=[Brobdingnag partitions polynom]; }; 17714 17766 unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; 17715 17767 unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; 17716 - updog = derive2 { name="updog"; version="2.0.2"; sha256="0xyr4kckg185slwrq46j1qp6z0h965zk6yy55zw2h3wd3gm0cbwa"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo reshape2]; }; 17768 + updog = derive2 { name="updog"; version="2.1.1"; sha256="0d5jimrsl30abi2y6023dvrnwcvygn73rzbk8agrklalg260razx"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; 17717 17769 uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; 17718 17770 uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; }; 17719 17771 upsetjs = derive2 { name="upsetjs"; version="1.9.0"; sha256="0xyy3022810yw0yb8n0cn1gaapizyq1vxadj5inrry5azk8a1kig"; depends=[htmlwidgets magrittr]; }; ··· 17738 17790 usefun = derive2 { name="usefun"; version="0.4.8"; sha256="0jbwfr04y65rlc2aa6483w9qcdqa4bmcx76j4rp9fracfszjb1hg"; depends=[dplyr]; }; 17739 17791 usemodels = derive2 { name="usemodels"; version="0.1.0"; sha256="17cnjg7vw3f2jxkqlfvxh6kn891h49waf5k5a5vb4yaa2ay6nhp3"; depends=[cli dplyr purrr recipes rlang tidyr tune]; }; 17740 17792 usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; }; 17741 - usethis = derive2 { name="usethis"; version="2.1.0"; sha256="1s40rbr2z9bilsldp8pv5abrr7n0ixyxi2qqbf4hfhs14rhigncy"; depends=[cli clipr crayon curl desc ellipsis fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; 17793 + usethis = derive2 { name="usethis"; version="2.1.3"; sha256="1gwvirp53pa0zychd7d47d56a2vfdzz7l3p61l8m9n270ac7bc1d"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; 17742 17794 usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; 17743 17795 ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; 17744 17796 uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; ··· 17756 17808 utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; 17757 17809 utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; 17758 17810 utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; 17759 - uuid = derive2 { name="uuid"; version="0.1-4"; sha256="0gm9ii7ncvllxbvyk6srsiinjmqyj7lmh84w43x4nhqpvafj9q4q"; depends=[]; }; 17811 + uuid = derive2 { name="uuid"; version="1.0-2"; sha256="0yiqlrvsh93k361a89gn6jrnlp6gicnil733if0kw4lqw8zimv8b"; depends=[]; }; 17760 17812 uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; 17761 17813 uwot = derive2 { name="uwot"; version="0.1.10"; sha256="08vxh085wnrxgwy35ksb4cr7ccjvd98pyr2zlgarqryfgc1bdqbf"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; 17762 17814 vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; ··· 17792 17844 varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; 17793 17845 varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; 17794 17846 varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; 17795 - varTestnlme = derive2 { name="varTestnlme"; version="1.1.0"; sha256="0zg88lapxik6imvhla14gwk4l025hhp1jrzkqwgv8510fnr130k9"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix matrixcalc merDeriv msm mvtnorm nlme quadprog saemix]; }; 17847 + varTestnlme = derive2 { name="varTestnlme"; version="1.1.1"; sha256="02i15pr6jaanqb3a4vbpsgd7zkgcmkgmdsf6cbkx6mh0zib7mpj3"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix merDeriv msm mvtnorm nlme quadprog saemix]; }; 17796 17848 varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; 17797 17849 varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; 17798 17850 varbvs = derive2 { name="varbvs"; version="2.5-16"; sha256="0pji7vqpbih01y7n0q6zpxhfszznzig4z3hmmpr4jqpdplv13x8d"; depends=[lattice latticeExtra Matrix nor1mix Rcpp]; }; ··· 18000 18052 wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; 18001 18053 wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; 18002 18054 wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; 18003 - wcde = derive2 { name="wcde"; version="0.0.2"; sha256="0jd7ffj0w3c200zrg3garb4ifpzj784j164vzc00brs80lnlnb57"; depends=[countrycode dplyr forcats lemon magrittr progress purrr readr stringr tibble tidyr tidyverse]; }; 18055 + wcde = derive2 { name="wcde"; version="0.0.3"; sha256="0nj3p2wbx2canpn1wfm6jw8p5ymwfyihvyy8hm9svmw5xk10kir8"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; 18004 18056 wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; }; 18005 18057 wdm = derive2 { name="wdm"; version="0.2.2"; sha256="1pidlfp67x3wnmkp0qgna4vz29qx09xsy7gfbqzrjqkdi7q1dihi"; depends=[Rcpp]; }; 18006 18058 wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; ··· 18078 18130 wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; 18079 18131 wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; 18080 18132 winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; 18081 - winch = derive2 { name="winch"; version="0.0.6"; sha256="1mjkbji4618f4sf4hj2lsc6r62pjlvzsvncql9ihcjj52mih9j29"; depends=[procmaps]; }; 18133 + winch = derive2 { name="winch"; version="0.0.7"; sha256="0h9xf4qpc1xk04q92dn4n1pjvlwz2sxg0rcv6nkwyp9qj67m6h88"; depends=[procmaps]; }; 18082 18134 windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; }; 18083 - windex = derive2 { name="windex"; version="2.0.2"; sha256="1zcxddf9dfkjdrlg5j2n34nmpia5vhw2s0hb28pf3wf4m1z2vrf9"; depends=[ape geiger phangorn scatterplot3d]; }; 18135 + windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; 18084 18136 windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; 18085 18137 winfapReader = derive2 { name="winfapReader"; version="0.1-3"; sha256="1g5z9kg5ws9cdixky2y0c7dw3f7lmh3ykjxrh3jjmkm75gzgs7p0"; depends=[lubridate]; }; 18086 18138 wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; ··· 18135 18187 wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; 18136 18188 wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; 18137 18189 wrGraph = derive2 { name="wrGraph"; version="1.3.0"; sha256="1zw9c3dl5lwksggvxsch1a9brzy7a5m6yi513h4fxf31njpc5s7g"; depends=[lattice RColorBrewer wrMisc]; }; 18138 - wrMisc = derive2 { name="wrMisc"; version="1.6.2"; sha256="1wpd1pa19b5ly4fixsfavr7rpsq8a0bcw4r6wbn5cwmdl66dsknp"; depends=[MASS]; }; 18190 + wrMisc = derive2 { name="wrMisc"; version="1.7.0"; sha256="0yhrgybvhi500m8hfcf52id3xfvbmgjl6kfg0qa7ll4bfjvzrfqx"; depends=[MASS]; }; 18139 18191 wrProteo = derive2 { name="wrProteo"; version="1.4.3"; sha256="1gqmj8lmc37brbzlzci37zpn9v6shs4ahy65kbx25zgdw19bdd1n"; depends=[knitr limma wrMisc]; }; 18140 18192 wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; 18141 18193 wrangle = derive2 { name="wrangle"; version="0.5.2"; sha256="1b6qgwdjvwbrarp9ylgkb5ia1p5a5g7ws0jyqrwc6hii8z5yj2qb"; depends=[dplyr lazyeval magrittr rlang tidyr]; }; ··· 18263 18315 zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; 18264 18316 zebu = derive2 { name="zebu"; version="0.1.3.0"; sha256="1rlcrvhic110h8r0mqwhkzq8w566jfymxpcwv63bvs7fd8j98vsv"; depends=[foreach ggplot2 iterators plyr reshape2]; }; 18265 18317 zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; 18266 - zen4R = derive2 { name="zen4R"; version="0.5"; sha256="074isxa7i4867cb849ibiw67l8j1f201j4ys7y7w7lb87gyaf8x2"; depends=[httr jsonlite keyring R6 xml2]; }; 18318 + zen4R = derive2 { name="zen4R"; version="0.5-1"; sha256="08h1f5jld8qgn96d1ckd6g7hbkcm8djr1jjd7x6ji396sbf9jvcw"; depends=[httr jsonlite keyring R6 xml2]; }; 18267 18319 zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; 18268 18320 zenplots = derive2 { name="zenplots"; version="1.0.4"; sha256="1r105ay0p00wfly8z54dg18i1fq7ppvxzri49i7zrlimqawzv19s"; depends=[graph loon MASS PairViz]; }; 18269 18321 zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; ··· 18306 18358 AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; 18307 18359 BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; 18308 18360 BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.1"; sha256="0pfildzmqdwnj6h2k692ym9i37lwc65jqgjcx6h3cz8spcmzxm8y"; depends=[carData caTools coda dplyr ggplot2 ggridges HDInterval reshape2 rlang ROCR texreg tidyr]; broken = true; }; 18309 - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-18"; sha256="0gdvna1a43p419hrs78afas9w7xhiqaqr4yivbkjms3l9cr5zb87"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; broken = true; }; 18310 18361 CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; 18311 - DMCfun = derive2 { name="DMCfun"; version="2.0.0"; sha256="130j380sqy8p0yiw0x3ax3krh0n178bad1v1y9rsg6i973m654am"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; broken = true; }; 18312 18362 DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; 18363 + EGAnet = derive2 { name="EGAnet"; version="0.9.8"; sha256="1mdvp67wnbgmdhdwlgq8p20vhbv4m3fyvdw3zrcxy9zd8mchjydh"; depends=[dplyr GGally glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot]; broken = true; }; 18313 18364 EPP = derive2 { name="EPP"; version="0.3.3"; sha256="0wwiz9i6azy60vhgqs0d4pwd2w5gxp8wj724lw6zmldnk3n6vb0k"; depends=[assertthat curl deldir dplyr flexclust leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp tibble]; broken = true; }; 18314 18365 EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; broken = true; }; 18315 18366 Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; 18316 - FORTLS = derive2 { name="FORTLS"; version="1.0.3"; sha256="0awc485r5vzxmd966gp4qrjqmiv4mvq7bfd5sa9s75vdvzcwvxf1"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen scales sp tidyr vroom]; broken = true; }; 18317 18367 GEVACO = derive2 { name="GEVACO"; version="1.0.0"; sha256="0rslnxqbj1pbbnp849pdn6l9dyfib9w19a1q3fw7kdjfir76gk6a"; depends=[nlme RLRsim]; broken = true; }; 18318 18368 GLIDE = derive2 { name="GLIDE"; version="1.0.2"; sha256="1z5h8br6aig24g5gsh8h6npm269id3h5gjjyf5avs4v08b51rpcv"; depends=[doParallel foreach MASS]; broken = true; }; 18319 18369 GPSeqClus = derive2 { name="GPSeqClus"; version="1.0.0"; sha256="1zxihac4hd2b1vvrb36v2c6lhn8pfs8q4zgzi2flyb0dnb5di09r"; depends=[geosphere leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; broken = true; }; ··· 18326 18376 LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.4"; sha256="08v160s9znvv808wcw7319p3dk189bmpypg2wkdzzgkdby4gj3fr"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; broken = true; }; 18327 18377 MAFDash = derive2 { name="MAFDash"; version="0.1.0"; sha256="0xk9zbdwmm597jck8v3w76d2s72k6amv8ya94y7jbnik60ndwnda"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly RColorBrewer reshape2 rmarkdown TCGAbiolinks]; broken = true; }; 18328 18378 MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; 18379 + MIMSunit = derive2 { name="MIMSunit"; version="0.11.0"; sha256="03mzjf86qs9kqpqn9vqspfv4jkx52s3yvgr3nk1p28w5qhdi2nq5"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr tibble xts]; broken = true; }; 18329 18380 MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; 18330 18381 MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; 18331 18382 MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; 18383 + MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.5"; sha256="1nd6sgqxx76yz6fyvdlvqvk7bg7dq8w4laamkabnzha35fsz567y"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; broken = true; }; 18332 18384 MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; 18333 18385 MoBPS = derive2 { name="MoBPS"; version="1.6.54"; sha256="1r15ag7c56bi54mby8kxb74l5v4qihdj7cr3i5vg8p5qpmvsff8m"; depends=[]; broken = true; }; 18334 18386 Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; ··· 18338 18390 OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; 18339 18391 OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; 18340 18392 POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; 18393 + Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; 18341 18394 QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; 18342 18395 RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; 18343 18396 RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; broken = true; }; 18397 + RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; 18344 18398 RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; 18345 18399 RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; 18346 18400 SDLfilter = derive2 { name="SDLfilter"; version="2.1.1"; sha256="1lyigd578ngsmqpkbbf6jv7lnffnccydlcd6vk9nvvynnx5x8r5a"; depends=[data_table dplyr ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; broken = true; }; 18347 18401 SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; 18348 18402 StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; 18349 18403 TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; 18404 + TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; broken = true; }; 18350 18405 TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; 18351 18406 Tushare = derive2 { name="Tushare"; version="0.1.3"; sha256="12aabkwlifc82yiym3yijpfpjhmhfwpw8mz4fb11qm6n4igr1yhg"; depends=[data_table forecast httr tidyverse]; broken = true; }; 18352 18407 TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; broken = true; }; 18353 18408 UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.1"; sha256="0626cix3v5j2nflqy6g0dc2101pif3p8x3r62d5kmn1si5p171gn"; depends=[data_table dplyr here magrittr questionr tidyverse]; broken = true; }; 18354 18409 UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; 18410 + XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; 18355 18411 adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; 18412 + aghq = derive2 { name="aghq"; version="0.2.1"; sha256="0c4yk2vcycxryrs0g5jnfsbwr0f2nwq660mmx3vsfsdqml2qdv5w"; depends=[Matrix mvQuad polynom rlang]; broken = true; }; 18356 18413 amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; 18357 18414 anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; 18358 18415 aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; 18359 18416 artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; 18417 + aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; 18360 18418 ausplotsR = derive2 { name="ausplotsR"; version="1.2.6"; sha256="1vnf1rhg5frv1kc5bdssvljww6bw2q1cj29y4304851fifk8l502"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils simba sp vegan]; broken = true; }; 18361 18419 batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; 18362 18420 biblio = derive2 { name="biblio"; version="0.0.2"; sha256="1yx90cmkcm5vran3n0p8l3hz9sqny7bhzgvnlsa8f4fddh0ah78p"; depends=[stringr yamlme]; broken = true; }; 18363 18421 binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; 18422 + boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; 18364 18423 caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; 18365 18424 cjbart = derive2 { name="cjbart"; version="0.1.0"; sha256="1lpqwm6py0xwmcj87crk9ivd96wy3kzfhkinv064d6dx5n4m4fax"; depends=[BART ggplot2 rlang tidyr]; broken = true; }; 18425 + compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; 18366 18426 connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; 18367 18427 contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; 18368 18428 cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; 18369 18429 danstat = derive2 { name="danstat"; version="0.1.0"; sha256="1wb4v4s9qc7qna7jgd1kk0xvyaqmxhnmjvr5wlk5jjl355lhjxbc"; depends=[httr jsonlite readr]; broken = true; }; 18430 + dataReporter = derive2 { name="dataReporter"; version="1.0.0"; sha256="12rwjd46h35cydvfx5qhb4rssqpm94b628zr06gy9nhwydnajn5x"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; broken = true; }; 18370 18431 diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; 18371 18432 dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; 18372 18433 dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; 18373 18434 dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; 18374 18435 elo = derive2 { name="elo"; version="2.1.1"; sha256="1i6qcw2plw12v065142kx58d911zr1gcsd1xic152zxvh89nmhxx"; depends=[pROC Rcpp]; broken = true; }; 18375 18436 endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; 18437 + evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; 18376 18438 expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; 18439 + fabisearch = derive2 { name="fabisearch"; version="0.0.3.6"; sha256="0gaw9hk7il4fsc0mklb3pfxl6kg7amydvqar8m2524hcb7ar835z"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; broken = true; }; 18377 18440 feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; 18378 18441 fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; 18379 18442 fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.1"; sha256="19ppb1m655z3n7h4wcd5bwjciw4ynjbi883ki50mr5di3zy64n4r"; depends=[limSolve quadprog]; broken = true; }; 18380 - garma = derive2 { name="garma"; version="0.9.8"; sha256="07c0pv8dpp0ll6zxx4k60r47nfx7i3iv1ygjq5vvb3had9hcad0f"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; broken = true; }; 18381 18443 gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; 18382 - gen3sis = derive2 { name="gen3sis"; version="1.3"; sha256="1s0214a0fp356fw0mqlddlgsqpw4prkkfhrzdkqkv3nqswcx1x08"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; broken = true; }; 18383 18444 gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; 18445 + ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; 18384 18446 glinvci = derive2 { name="glinvci"; version="1.1.4"; sha256="0s8qmrqajsrmzp30xgi49n96ks22dxxa0c5psqkw67n66h39njlh"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; broken = true; }; 18385 18447 gorica = derive2 { name="gorica"; version="0.1.1"; sha256="06022nkdqmd653bxi81ks4lq5gx3j9jxbwkx1wjmmj4ph6qabkmn"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; broken = true; }; 18386 18448 graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; 18387 18449 happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; broken = true; }; 18450 + hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; 18388 18451 healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; 18452 + hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; 18389 18453 incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; 18390 18454 ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; 18455 + jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; 18391 18456 jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; 18392 18457 lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; 18393 18458 libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; ··· 18398 18463 miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; 18399 18464 mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; 18400 18465 nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; 18466 + ndtv = derive2 { name="ndtv"; version="0.13.1"; sha256="18d51xp62fis63p2prybhigxx03yhbrzs0k1yhh9j21548wzhb2l"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; broken = true; }; 18401 18467 ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; 18402 18468 oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; 18469 + occCite = derive2 { name="occCite"; version="0.5.0"; sha256="09y1vqjshrh8mbw1xsmcfrcxy5ccx14gf6p5mfzlwm3ywsi84hcc"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; broken = true; }; 18403 18470 pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; 18471 + pct = derive2 { name="pct"; version="0.9.1"; sha256="0chqvaa8cfv3s3zf940hzca90967raakxndyxcg08acysvfq6fir"; depends=[boot readr sf stplanr]; broken = true; }; 18404 18472 pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; 18405 - plotKML = derive2 { name="plotKML"; version="0.8-1"; sha256="0a6hrhcsw4zm1y8ksvhf3h9pz0gm0k2fn5r7gsmnxix9p5iv7rkx"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sf sp spacetime stars stringr XML zoo]; broken = true; }; 18406 18473 pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; 18407 18474 pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; 18475 + podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; 18408 18476 polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; 18409 - popEpi = derive2 { name="popEpi"; version="0.4.8"; sha256="1gc7kyik0209pc8mvl6c69lzb3dnkif0mby4l4pq8zfdz73lmi06"; depends=[data_table Epi survival]; broken = true; }; 18410 - prioritizr = derive2 { name="prioritizr"; version="7.0.1"; sha256="1902anqfii32mh12y6777bgv6z50cis8h5zwvzlhk8gbwj8ffs6g"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf slam sp tibble uuid withr]; broken = true; }; 18411 18477 psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; 18412 18478 qbld = derive2 { name="qbld"; version="1.0.1"; sha256="0agx32f2pf1hzs3and40zd7kfkjml7qjbnn0im4dr2v10h1jz6c0"; depends=[knitr mcmcse Rcpp RcppArmadillo RcppDist rmarkdown stableGR]; broken = true; }; 18413 18479 qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; 18414 18480 rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; 18481 + rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; broken = true; }; 18415 18482 rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; 18416 18483 rdomains = derive2 { name="rdomains"; version="0.1.9"; sha256="0pfz438qiz8mqh391nlhz2q2r8830y5i0sg1ajhppj1hq2cgqqbg"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; broken = true; }; 18417 18484 rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; 18418 - rnpn = derive2 { name="rnpn"; version="1.2.2"; sha256="1vijss973b6qxwvljrjcggjhv4wbssazn153phbidjy44kfyw3ky"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; broken = true; }; 18419 - robcp = derive2 { name="robcp"; version="0.3.2"; sha256="081dxq8hcaa7xdz6n5ri4lchx30ma7c844bcirkankkmpz73igcv"; depends=[Rcpp]; broken = true; }; 18420 18485 seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; 18421 18486 shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; 18422 18487 simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; ··· 18424 18489 slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; 18425 18490 soilphysics = derive2 { name="soilphysics"; version="4.0"; sha256="0b4fkc1plmafjdlad7s4pvca6lafmrswwpfddvsh73734s7cslmq"; depends=[boot fields MASS shiny shinydashboard]; broken = true; }; 18426 18491 spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; 18427 - starvars = derive2 { name="starvars"; version="1.1.7"; sha256="0m8f104s49k2wh89c7k8pz1c5x4xm7qy9hf90fk2kh84nw6jxnbs"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; broken = true; }; 18428 - stats19 = derive2 { name="stats19"; version="1.4.3"; sha256="1kbc02c8h7mqdx8sx6c5qhj2c8wx12jcq9vyqxr9zyj4mjx5ayqs"; depends=[readr sf]; broken = true; }; 18492 + stplanr = derive2 { name="stplanr"; version="0.8.4"; sha256="0mkkaz47a3cfbi4jqm930j8dyg3y5j9njqp9za121arsyv0jp3zf"; depends=[curl data_table dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; broken = true; }; 18429 18493 stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; broken = true; }; 18430 18494 supc = derive2 { name="supc"; version="0.2.5"; sha256="1qj7a1zcj3mf0a40anifjyq851yjksygrpj4vsf0dm4yfwl5viwx"; depends=[BH Rcpp]; broken = true; }; 18431 - supernova = derive2 { name="supernova"; version="2.4.2"; sha256="0xbly0jbzhffd3zrgp1rnlr7miyzwk6zagw7lbnhn5l4nq9n6hx7"; depends=[backports cli ggplot2 magrittr pillar purrr rlang stringr tibble vctrs]; broken = true; }; 18432 18495 swissparl = derive2 { name="swissparl"; version="0.2.1"; sha256="0181ls1gw68kfz3yqf8m2nwhah87i9m164rlbycy1kxq9adi93cs"; depends=[crayon dplyr ggplot2 httr jsonlite lubridate magrittr purrr stringr tibble tidyr]; broken = true; }; 18433 - targeted = derive2 { name="targeted"; version="0.1.1"; sha256="09y4lhwfh7rzk343hc2pjr334x3978q6vyhsvpana0db8plas7aw"; depends=[futile_logger lava optimx Rcpp RcppArmadillo]; broken = true; }; 18434 - uFTIR = derive2 { name="uFTIR"; version="0.1.3"; sha256="188zw6hcdp62idczkx454xya90alnpk5bzpv9756lg129r6j4rlk"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; 18496 + tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; 18497 + tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; 18435 18498 unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; 18436 18499 usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; 18437 18500 viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; };
+57 -2
pkgs/development/r-modules/default.nix
··· 338 338 phytools = [ pkgs.which ]; 339 339 PKI = [ pkgs.openssl.dev ]; 340 340 png = [ pkgs.libpng.dev ]; 341 - proj4 = [ pkgs.proj ]; 342 341 protolite = [ pkgs.protobuf ]; 343 342 R2SWF = with pkgs; [ zlib libpng freetype.dev ]; 344 343 RAppArmor = [ pkgs.libapparmor ]; ··· 450 449 RDieHarder = [ pkgs.gsl ]; 451 450 QF = [ pkgs.gsl ]; 452 451 PICS = [ pkgs.gsl ]; 452 + RcppCWB = [ pkgs.pkg-config ]; 453 + rrd = [ pkgs.pkg-config ]; 454 + trackViewer = [ pkgs.zlib.dev ]; 455 + themetagenomics = [ pkgs.zlib.dev ]; 456 + NanoMethViz = [ pkgs.zlib.dev ]; 453 457 }; 454 458 455 459 packagesWithBuildInputs = { ··· 572 576 sparkwarc = [ pkgs.zlib.dev ]; 573 577 RoBMA = [ pkgs.jags ]; 574 578 rGEDI = with pkgs; [ libgeotiff.dev libaec zlib.dev hdf5.dev ]; 579 + rawrr = [ pkgs.mono ]; 580 + HDF5Array = [ pkgs.zlib.dev ]; 581 + FLAMES = [ pkgs.zlib.dev ]; 582 + ncdfFlow = [ pkgs.zlib.dev ]; 583 + proj4 = [ pkgs.proj.dev ]; 584 + rtmpt = [ pkgs.gsl ]; 585 + mixcat = [ pkgs.gsl ]; 586 + libstableR = [ pkgs.gsl ]; 587 + landsepi = [ pkgs.gsl ]; 588 + flan = [ pkgs.gsl ]; 589 + econetwork = [ pkgs.gsl ]; 590 + crandep = [ pkgs.gsl ]; 591 + catSurv = [ pkgs.gsl ]; 592 + ccfindR = [ pkgs.gsl ]; 593 + SPARSEMODr = [ pkgs.gsl ]; 594 + RKHSMetaMod = [ pkgs.gsl ]; 595 + LCMCR = [ pkgs.gsl ]; 596 + BNSP = [ pkgs.gsl ]; 597 + scModels = [ pkgs.mpfr.dev ]; 598 + multibridge = [ pkgs.mpfr.dev ]; 599 + RcppCWB = with pkgs; [ pcre.dev glib.dev ]; 600 + RmecabKo = [ pkgs.mecab ]; 601 + PoissonBinomial = [ pkgs.fftw.dev ]; 602 + rrd = [ pkgs.rrdtool ]; 603 + flowWorkspace = [ pkgs.zlib.dev ]; 575 604 }; 576 605 577 606 packagesRequiringX = [ ··· 805 834 "CoTiMA" 806 835 "TBRDist" 807 836 "Rogue" 837 + "fixest" 838 + "paxtoolsr" 839 + "systemPipeShiny" 808 840 ]; 809 841 810 842 packagesToSkipCheck = [ ··· 818 850 "av" 819 851 "rgl" 820 852 "NetLogoR" 821 - "proj4" 822 853 "x13binary" 854 + "valse" 855 + "HierO" 823 856 824 857 # Impure network access during build 825 858 "waddR" 859 + "tiledb" 860 + "x13binary" 861 + "switchr" 826 862 827 863 # ExperimentHub dependents, require net access during build 828 864 "DuoClustering2018" ··· 845 881 "muscData" 846 882 "org_Mxanthus_db" 847 883 "scpdata" 884 + "nullrangesData" 848 885 ]; 849 886 850 887 otherOverrides = old: new: { ··· 1183 1220 ''; 1184 1221 }); 1185 1222 1223 + arrow = old.arrow.overrideDerivation (attrs: { 1224 + preConfigure = '' 1225 + patchShebangs configure 1226 + ''; 1227 + }); 1228 + 1229 + proj4 = old.proj4.overrideDerivation (attrs: { 1230 + preConfigure = '' 1231 + substituteInPlace configure \ 1232 + --replace "-lsqlite3" "-L${lib.makeLibraryPath [ pkgs.sqlite ]} -lsqlite3" 1233 + ''; 1234 + }); 1235 + 1236 + rrd = old.rrd.overrideDerivation (attrs: { 1237 + preConfigure = '' 1238 + patchShebangs configure 1239 + ''; 1240 + }); 1186 1241 }; 1187 1242 in 1188 1243 self
+2 -2
pkgs/development/tools/analysis/rr/zen_workaround.nix
··· 2 2 3 3 /* The python script shouldn't be needed for users of this kernel module. 4 4 https://github.com/rr-debugger/rr/blob/master/scripts/zen_workaround.py 5 - The module itself is called "zen_workaround" (a bit generic unfortunatelly). 5 + The module itself is called "zen_workaround" (a bit generic unfortunately). 6 6 */ 7 7 stdenv.mkDerivation rec { 8 8 pname = "rr-zen_workaround"; ··· 39 39 homepage = "https://github.com/rr-debugger/rr/wiki/Zen#kernel-module"; 40 40 license = licenses.gpl2; 41 41 maintainers = [ maintainers.vcunat ]; 42 - platforms = platforms.linux; 42 + platforms = [ "x86_64-linux" ]; 43 43 broken = versionOlder kernel.version "4.19"; # 4.14 breaks and 4.19 works 44 44 }; 45 45 }
+5 -1
pkgs/development/tools/database/pgcli/default.nix
··· 46 46 47 47 checkInputs = [ pytestCheckHook mock ]; 48 48 49 - disabledTests = lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; 49 + disabledTests = [ 50 + # tests that expect output from an older version of cli-helpers 51 + "test_format_output" 52 + "test_format_output_auto_expand" 53 + ] ++ lib.optionals stdenv.isDarwin [ "test_application_name_db_uri" ]; 50 54 51 55 meta = with lib; { 52 56 description = "Command-line interface for PostgreSQL";
-4
pkgs/development/tools/metal-cli/default.nix
··· 13 13 14 14 vendorSha256 = "sha256-ifSfeJjrZI1Hrsq64zAGBiLVc8GKvq+Ddg26gQooyTs="; 15 15 16 - postInstall = '' 17 - ln -s $out/bin/metal-cli $out/bin/metal 18 - ''; 19 - 20 16 doCheck = false; 21 17 22 18 meta = with lib; {
+2 -2
pkgs/development/tools/vagrant/default.nix
··· 5 5 let 6 6 # NOTE: bumping the version and updating the hash is insufficient; 7 7 # you must use bundix to generate a new gemset.nix in the Vagrant source. 8 - version = "2.2.18"; 8 + version = "2.2.19"; 9 9 url = "https://github.com/hashicorp/vagrant/archive/v${version}.tar.gz"; 10 - sha256 = "sha256-NQiwkGuDLXMXyNNiIHmOwnS3IefvY9DPmRxo8Z2drpA="; 10 + sha256 = "sha256-Tw5rHUZuJt6taCxNSEPo9koBLrpL6RUGrmxtNNPZyPk="; 11 11 12 12 deps = bundlerEnv rec { 13 13 name = "${pname}-${version}";
+12 -12
pkgs/development/tools/vagrant/gemset.nix
··· 64 64 platforms = []; 65 65 source = { 66 66 remotes = ["https://rubygems.org"]; 67 - sha256 = "1iykfw2j6dd26rhgid3a17zghrmbmi68ppf3a7cdkvii68p4f37a"; 67 + sha256 = "15yrwawhvkjvfg0dsf8z81876ddj6161q0wh5s7pw4sim8z8pspr"; 68 68 type = "gem"; 69 69 }; 70 - version = "0.85.0"; 70 + version = "0.88.0"; 71 71 }; 72 72 ffi = { 73 73 groups = ["default"]; 74 74 platforms = []; 75 75 source = { 76 76 remotes = ["https://rubygems.org"]; 77 - sha256 = "1wgvaclp4h9y8zkrgz8p2hqkrgr4j7kz0366mik0970w532cbmcq"; 77 + sha256 = "0ssxcywmb3flxsjdg13is6k01807zgzasdhj4j48dm7ac59cmksn"; 78 78 type = "gem"; 79 79 }; 80 - version = "1.15.3"; 80 + version = "1.15.4"; 81 81 }; 82 82 gssapi = { 83 83 dependencies = ["ffi"]; ··· 127 127 platforms = []; 128 128 source = { 129 129 remotes = ["https://rubygems.org"]; 130 - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; 130 + sha256 = "0vdd1kii40qhbr9n8qx71k2gskq6rkl8ygy8hw5hfj8bb5a364xf"; 131 131 type = "gem"; 132 132 }; 133 - version = "1.8.10"; 133 + version = "1.8.11"; 134 134 }; 135 135 listen = { 136 136 dependencies = ["rb-fsevent" "rb-inotify"]; ··· 138 138 platforms = []; 139 139 source = { 140 140 remotes = ["https://rubygems.org"]; 141 - sha256 = "1dq7yd4s9accpjiq0f92sgikw3whc5wnjn065laggkpqcqgx75gh"; 141 + sha256 = "0ncfhdkjiwq9l1pm87ax2pa20kz2j0dz56vi74cnr5a6cfk0qb5p"; 142 142 type = "gem"; 143 143 }; 144 - version = "3.6.0"; 144 + version = "3.7.0"; 145 145 }; 146 146 little-plugger = { 147 147 groups = ["default"]; ··· 190 190 platforms = []; 191 191 source = { 192 192 remotes = ["https://rubygems.org"]; 193 - sha256 = "0dlxwc75iy0dj23x824cxpvpa7c8aqcpskksrmb32j6m66h5mkcy"; 193 + sha256 = "1z5wvk6qi4ws1kjh7xn1rfirqw5m72bwvqacck1fjpbh33pcrwxv"; 194 194 type = "gem"; 195 195 }; 196 - version = "3.2021.0704"; 196 + version = "3.2021.0901"; 197 197 }; 198 198 multi_json = { 199 199 groups = ["default"]; ··· 274 274 platforms = []; 275 275 source = { 276 276 remotes = ["https://rubygems.org"]; 277 - sha256 = "1rmm9ym3qxysrmvgnrad28llnzj6wj9ljir8zaw9myas7m8vhvsq"; 277 + sha256 = "0wpn2m28qs7s95nqg67dn5vpyh05q7d0w6sm4svhflm41cd0akr4"; 278 278 type = "gem"; 279 279 }; 280 - version = "0.2.6"; 280 + version = "0.2.7"; 281 281 }; 282 282 rexml = { 283 283 groups = ["default"];
+7 -4
pkgs/games/opendungeons/cmakepaths.patch
··· 1 - --- ../CMakeLists.txt 2 - +++ ../CMakeLists.txt 3 - @@ -31,12 +31,12 @@ 4 - set(OD_PLUGINS_CFG_PATH ".") 1 + diff --git a/CMakeLists.txt b/CMakeLists.txt 2 + index f8ff3c28..b57ee337 100644 3 + --- a/CMakeLists.txt 4 + +++ b/CMakeLists.txt 5 + @@ -30,13 +30,13 @@ if(WIN32) 6 + set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}) 5 7 else() 6 8 # Set binary and data install locations if we want to use the installer 7 9 - set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}/games CACHE PATH "Absolute path to the game binary directory") 8 10 + set(OD_BIN_PATH ${CMAKE_INSTALL_PREFIX}/bin CACHE PATH "Absolute path to the game binary directory") 9 11 set(OD_DATA_PATH ${CMAKE_INSTALL_PREFIX}/share/games/${PROJECT_NAME} CACHE PATH "Absolute path to the game data directory") 10 12 set(OD_SHARE_PATH ${CMAKE_INSTALL_PREFIX}/share CACHE PATH "Absolute path to the shared data directory (desktop file, icons, etc.)") 13 + set(OD_MAN_PATH ${OD_SHARE_PATH}/man CACHE PATH "Absolute path to the manpages directory") 11 14 # Set the plugins.cfg file path to a common but architecture-dependent location. 12 15 # Because the plugins.cfg Ogre plugins path path may vary depending on the architecture used. 13 16 - set(OD_PLUGINS_CFG_PATH /etc/${PROJECT_NAME} CACHE PATH "Absolute path to the Ogre plugins.cfg file")
+3 -4
pkgs/games/opendungeons/default.nix
··· 2 2 3 3 stdenv.mkDerivation rec { 4 4 pname = "opendungeons"; 5 - version = "0.7.1"; 5 + version = "unstable-2021-11-06"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "OpenDungeons"; 9 9 repo = "OpenDungeons"; 10 - rev = version; 11 - sha256 = "0nipb2h0gn628yxlahjgnfhmpfqa19mjdbj3aqabimdfqds9pryh"; 10 + rev = "c180ed1864eab5fbe847d1dd5c5c936c4e45444e"; 11 + sha256 = "0xf7gkpy8ll1h59wyaljf0hr8prg7p4ixz80mxqwcnm9cglpgn63"; 12 12 }; 13 13 14 14 patches = [ ./cmakepaths.patch ]; 15 15 16 16 nativeBuildInputs = [ cmake pkg-config ]; 17 17 buildInputs = [ ogre cegui boost sfml openal ois ]; 18 - NIX_LDFLAGS = "-lpthread"; 19 18 20 19 meta = with lib; { 21 20 description = "An open source, real time strategy game sharing game elements with the Dungeon Keeper series and Evil Genius";
+1 -1
pkgs/os-specific/linux/ddcci/default.nix
··· 38 38 license = licenses.gpl2Plus; 39 39 maintainers = with maintainers; [ ]; 40 40 platforms = platforms.linux; 41 - broken = kernel.kernelOlder "5.1"; 41 + broken = kernel.kernelOlder "5.1" || kernel.kernelAtLeast "5.15"; 42 42 }; 43 43 }
+1 -1
pkgs/os-specific/linux/ena/default.nix
··· 41 41 license = licenses.gpl2Only; 42 42 maintainers = [ maintainers.eelco ]; 43 43 platforms = platforms.linux; 44 - broken = kernel.kernelOlder "4.5"; 44 + broken = kernel.kernelOlder "4.5" || kernel.kernelAtLeast "5.15"; 45 45 }; 46 46 }
+1 -1
pkgs/os-specific/linux/evdi/default.nix
··· 33 33 platforms = platforms.linux; 34 34 license = with licenses; [ lgpl21Only gpl2Only ]; 35 35 homepage = "https://www.displaylink.com/"; 36 - broken = kernel.kernelOlder "4.19" || stdenv.isAarch64; 36 + broken = kernel.kernelOlder "4.19" || kernel.kernelAtLeast "5.15" || stdenv.isAarch64; 37 37 }; 38 38 }
+1
pkgs/os-specific/linux/kvmfr/default.nix
··· 28 28 license = licenses.gpl2Plus; 29 29 maintainers = with maintainers; [ j-brn ]; 30 30 platforms = [ "x86_64-linux" ]; 31 + broken = kernel.kernelOlder "5.3"; 31 32 }; 32 33 }
+1 -1
pkgs/os-specific/linux/rtl8188eus-aircrack/default.nix
··· 36 36 homepage = "https://github.com/aircrack-ng/rtl8188eus"; 37 37 license = licenses.gpl2Only; 38 38 maintainers = with maintainers; [ fortuneteller2k ]; 39 - broken = kernel.isHardened; 39 + broken = kernel.kernelAtLeast "5.15" || kernel.isHardened; 40 40 }; 41 41 }
+3 -3
pkgs/os-specific/linux/rtl8192eu/default.nix
··· 6 6 7 7 in stdenv.mkDerivation rec { 8 8 pname = "rtl8192eu"; 9 - version = "${kernel.version}-4.4.1.20210403"; 9 + version = "${kernel.version}-4.4.1.20211023"; 10 10 11 11 src = fetchFromGitHub { 12 12 owner = "Mange"; 13 13 repo = "rtl8192eu-linux-driver"; 14 - rev = "ab35c7e9672f37d75b7559758c99f6d027607687"; 15 - sha256 = "sha256-sTIaye4oWNYEnNuXlrTLobaFKXzBLsfJXdJuc10EdJI="; 14 + rev = "744bbe52976e51895fce2c1d4075f97a98dca2b2"; 15 + sha256 = "1ayb3fljvpljwcgi47h8vj2d2w5imqyjxc7mvmfrvmilzg5d5cj7"; 16 16 }; 17 17 18 18 hardeningDisable = [ "pic" ];
+1 -1
pkgs/os-specific/linux/rtl8812au/default.nix
··· 50 50 license = licenses.gpl2Only; 51 51 platforms = platforms.linux; 52 52 maintainers = with maintainers; [ fortuneteller2k ]; 53 - broken = kernel.kernelOlder "4.10" || kernel.isHardened; 53 + broken = kernel.kernelOlder "4.10" || kernel.kernelAtLeast "5.15" || kernel.isHardened; 54 54 }; 55 55 }
+3 -3
pkgs/os-specific/linux/rtl8814au/default.nix
··· 2 2 3 3 stdenv.mkDerivation { 4 4 pname = "rtl8814au"; 5 - version = "${kernel.version}-unstable-2021-05-18"; 5 + version = "${kernel.version}-unstable-2021-10-25"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "morrownr"; 9 9 repo = "8814au"; 10 - rev = "388786c864f9b1437fc4d934b1eccf6d7f1e1355"; 11 - sha256 = "sha256-2EnheODPFWTGN/fz45LWRSOGeV6pTENEUrehahj+PJ4="; 10 + rev = "d36c0874716b0776ac6c7dcd6110598ef0f6dd53"; 11 + sha256 = "0lk3ldff489ggbqmlfi4zvnp1cvxj1b06m0fhpzai82070klzzmj"; 12 12 }; 13 13 14 14 buildInputs = kernel.moduleBuildDependencies;
+4 -4
pkgs/os-specific/linux/rtl8821au/default.nix
··· 2 2 3 3 stdenv.mkDerivation rec { 4 4 pname = "rtl8821au"; 5 - version = "${kernel.version}-unstable-2021-05-18"; 5 + version = "${kernel.version}-unstable-2021-11-05"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "morrownr"; 9 - repo = "8821au"; 10 - rev = "6f6a9d5772bb2b75f18374c01c82c6b3e8e3244d"; 11 - sha256 = "sha256-RqtLR3sNcLXhUrNloSTRKubL1SVwzbVe73AsBYYSXNE="; 9 + repo = "8821au-20210708"; 10 + rev = "dd9f442d86535fb749ab06f38f97160484d9f04b"; 11 + sha256 = "0d90zd45b8934wxy51q1x39lx4n3i28zjm6jcq98wkm4lypgphxv"; 12 12 }; 13 13 14 14 nativeBuildInputs = [ bc nukeReferences ];
+3 -3
pkgs/os-specific/linux/rtl8821cu/default.nix
··· 2 2 3 3 stdenv.mkDerivation rec { 4 4 pname = "rtl8821cu"; 5 - version = "${kernel.version}-unstable-2021-05-19"; 5 + version = "${kernel.version}-unstable-2021-10-21"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "morrownr"; 9 9 repo = "8821cu"; 10 - rev = "2430c354c9b15fa6193a263c99ce57211d50c66f"; 11 - sha256 = "sha256-PkrpwebZYh/hBukqDQf6pxfbkVyA+CpYtte5pmzgLtw="; 10 + rev = "4e2d84c5e70245f850877f355e8bf293f252f61c"; 11 + sha256 = "1j32psvfgzfs5b1pdff6xk76iz7j8scakji6zm3vgqb2ssbxx1k1"; 12 12 }; 13 13 14 14 hardeningDisable = [ "pic" ];
+3 -3
pkgs/os-specific/linux/rtl88x2bu/default.nix
··· 2 2 3 3 stdenv.mkDerivation rec { 4 4 pname = "rtl88x2bu"; 5 - version = "${kernel.version}-unstable-2021-05-18"; 5 + version = "${kernel.version}-unstable-2021-11-04"; 6 6 7 7 src = fetchFromGitHub { 8 8 owner = "morrownr"; 9 9 repo = "88x2bu"; 10 - rev = "80b03962e33f86f99e898305d8d597140503de03"; 11 - sha256 = "sha256-C7XOpKgwxM9UbfW3wHteInTmAUM3FFqN1MHMKxP8gBA="; 10 + rev = "745d134080b74b92389ffe59c03dcfd6658f8655"; 11 + sha256 = "0f1hsfdw3ar78kqzr4hi04kpp5wnx0hd29f9rm698k0drxaw1g44"; 12 12 }; 13 13 14 14 hardeningDisable = [ "pic" ];
+1
pkgs/os-specific/linux/rtl88xxau-aircrack/default.nix
··· 48 48 license = licenses.gpl2Only; 49 49 maintainers = [ maintainers.jethro ]; 50 50 platforms = [ "x86_64-linux" "i686-linux" ]; 51 + broken = kernel.kernelAtLeast "5.15"; 51 52 }; 52 53 }
+1 -1
pkgs/os-specific/linux/xmm7360-pci/default.nix
··· 24 24 license = licenses.isc; 25 25 maintainers = with maintainers; [ flokli hexa ]; 26 26 platforms = platforms.linux; 27 - broken = kernel.kernelAtLeast "5.14"; 27 + broken = kernel.kernelOlder "4.10" || kernel.kernelAtLeast "5.14"; 28 28 }; 29 29 }
+2 -2
pkgs/servers/mail/sympa/default.nix
··· 61 61 in 62 62 stdenv.mkDerivation rec { 63 63 pname = "sympa"; 64 - version = "6.2.64"; 64 + version = "6.2.66"; 65 65 66 66 src = fetchFromGitHub { 67 67 owner = "sympa-community"; 68 68 repo = pname; 69 69 rev = version; 70 - sha256 = "sha256-7bBOhx6sDyln37OEgRLJwgu0rklJm872hINog2EJ/+E="; 70 + sha256 = "sha256-rD6sYsEsAyu+4Vy2wMtWCtlzXoLeZgeu9hkoxOvwiP4="; 71 71 }; 72 72 73 73 configureFlags = [
+1 -1
pkgs/servers/openafs/1.8/module.nix
··· 56 56 license = licenses.ipl10; 57 57 platforms = platforms.linux; 58 58 maintainers = with maintainers; [ maggesi spacefrogg ]; 59 - broken = versionOlder kernel.version "3.18" || kernel.isHardened; 59 + broken = versionOlder kernel.version "3.18" || kernel.kernelAtLeast "5.15" || kernel.isHardened; 60 60 }; 61 61 }
+1 -1
pkgs/servers/openafs/1.9/module.nix
··· 58 58 license = licenses.ipl10; 59 59 platforms = platforms.linux; 60 60 maintainers = [ maintainers.maggesi maintainers.spacefrogg ]; 61 - broken = versionOlder kernel.version "3.18" || kernel.isHardened; 61 + broken = versionOlder kernel.version "3.18" || kernel.kernelAtLeast "5.15" || kernel.isHardened; 62 62 }; 63 63 }
+8 -1
pkgs/shells/zsh/default.nix
··· 1 - { lib, stdenv, fetchurl, ncurses, pcre, buildPackages }: 1 + { lib, stdenv, fetchurl, fetchpatch, ncurses, pcre, buildPackages }: 2 2 3 3 let 4 4 version = "5.8"; ··· 21 21 patches = [ 22 22 # fix location of timezone data for TZ= completion 23 23 ./tz_completion.patch 24 + # This commit will be released with the next version of zsh 25 + (fetchpatch { 26 + name = "fix-git-stash-drop-completions.patch"; 27 + url = "https://github.com/zsh-users/zsh/commit/754658aff38e1bdf487c58bec6174cbecd019d11.patch"; 28 + sha256 = "sha256-ud/rLD+SqvyTzT6vwOr+MWH+LY5o5KACrU1TpmL15Lo="; 29 + excludes = [ "ChangeLog" ]; 30 + }) 24 31 ]; 25 32 26 33 buildInputs = [ ncurses pcre ];
+2 -2
pkgs/tools/misc/diffoscope/default.nix
··· 9 9 # Note: when upgrading this package, please run the list-missing-tools.sh script as described below! 10 10 python3Packages.buildPythonApplication rec { 11 11 pname = "diffoscope"; 12 - version = "188"; 12 + version = "190"; 13 13 14 14 src = fetchurl { 15 15 url = "https://diffoscope.org/archive/diffoscope-${version}.tar.bz2"; 16 - sha256 = "sha256-kB3EnmnQYqal4cdzwArH+QdHe5wnUOnbjbQAz52g1Us="; 16 + sha256 = "sha256-iZ9OJESNlGgsYTO9jbzEX5sCz8Rrhs7cecJEy7j4U+c="; 17 17 }; 18 18 19 19 outputs = [ "out" "man" ];
+2 -4
pkgs/tools/misc/synth/default.nix
··· 4 4 , pkg-config 5 5 , openssl 6 6 , stdenv 7 - , CoreFoundation 7 + , AppKit 8 8 , Security 9 - , SystemConfiguration 10 9 }: 11 10 12 11 rustPlatform.buildRustPackage rec { ··· 25 24 nativeBuildInputs = [ pkg-config ]; 26 25 27 26 buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ 28 - CoreFoundation 27 + AppKit 29 28 Security 30 - SystemConfiguration 31 29 ]; 32 30 33 31 # requires unstable rust features
+3 -3
pkgs/tools/networking/amass/default.nix
··· 5 5 6 6 buildGoModule rec { 7 7 pname = "amass"; 8 - version = "3.14.2"; 8 + version = "3.14.3"; 9 9 10 10 src = fetchFromGitHub { 11 11 owner = "OWASP"; 12 12 repo = "Amass"; 13 13 rev = "v${version}"; 14 - sha256 = "sha256-tyM9MscitFgV6XW7hwSrZfdYAv+08yN09ibA6OnUidA="; 14 + sha256 = "sha256-bDDd0QvXvXngHx4GJFeWhv1yQmPj2IFDSuOB7pJDl3I="; 15 15 }; 16 16 17 - vendorSha256 = "sha256-Ty1feBGgn5w6BXTEqdzWRzmUuUqRZaE4GiQrRMB3yrM="; 17 + vendorSha256 = "sha256-lM/UWrljJHks+by4kUjlk0f39j/Qo+5+kxUVgrsO0zE="; 18 18 19 19 outputs = [ "out" "wordlists" ]; 20 20
+1
pkgs/tools/package-management/auditwheel/default.nix
··· 52 52 bsd3 # from https://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-projects/pax-utils/lddtree.py 53 53 ]; 54 54 maintainers = with maintainers; [ davhau ]; 55 + platforms = platforms.linux; 55 56 }; 56 57 }
+11 -9
pkgs/top-level/all-packages.nix
··· 3544 3544 sydbox = callPackage ../os-specific/linux/sydbox { }; 3545 3545 3546 3546 synth = callPackage ../tools/misc/synth { 3547 - inherit (darwin.apple_sdk.frameworks) CoreFoundation Security SystemConfiguration; 3547 + inherit (darwin.apple_sdk.frameworks) AppKit Security; 3548 3548 }; 3549 3549 3550 3550 syscall_limiter = callPackage ../os-specific/linux/syscall_limiter {}; ··· 3872 3872 inherit (darwin.apple_sdk.frameworks) Carbon IOKit; 3873 3873 }; 3874 3874 3875 - cemu = qt5.callPackage ../applications/science/math/cemu { }; 3875 + cemu = qt5.callPackage ../applications/science/math/cemu { 3876 + stdenv = gcc9Stdenv; 3877 + }; 3876 3878 3877 3879 isolyzer = callPackage ../tools/cd-dvd/isolyzer { }; 3878 3880 ··· 20228 20230 go = buildPackages.go_1_16; 20229 20231 }; 20230 20232 # go_1_17 has go module changes which may not be portable 20231 - # across different go versions and/or platforms, 20232 - # it also requires >=10.13 stdenv on darwin which 20233 - # is not currently available for x86_64-darwin 20233 + # across different go versions and/or platforms: 20234 + # https://github.com/NixOS/nixpkgs/issues/144667 20234 20235 # 20235 20236 # do not uncomment this without approval from the go CODEOWNERS 20236 20237 #buildGo117Package = callPackage ../development/go-packages/generic { ··· 20246 20247 go = buildPackages.go_1_16; 20247 20248 }; 20248 20249 # go_1_17 has go module changes which may not be portable 20249 - # across different go versions and/or platforms, 20250 - # it also requires >=10.13 stdenv on darwin which 20251 - # is not currently available for x86_64-darwin 20250 + # across different go versions and/or platforms: 20251 + # https://github.com/NixOS/nixpkgs/issues/144667 20252 20252 # 20253 20253 # do not uncomment this without approval from the go CODEOWNERS 20254 20254 #buildGo117Module = callPackage ../development/go-modules/generic { ··· 25930 25930 25931 25931 dupd = callPackage ../tools/misc/dupd { }; 25932 25932 25933 + jconvolver = callPackage ../applications/audio/jconvolver { }; 25934 + 25933 25935 jdupes = callPackage ../tools/misc/jdupes { }; 25934 25936 25935 25937 jed = callPackage ../applications/editors/jed { }; ··· 30188 30190 openarena = callPackage ../games/openarena { }; 30189 30191 30190 30192 opendungeons = callPackage ../games/opendungeons { 30191 - ogre = ogre1_9; 30193 + ogre = ogre1_10; 30192 30194 }; 30193 30195 30194 30196 openlierox = callPackage ../games/openlierox { };
+3 -4
pkgs/top-level/python-packages.nix
··· 5676 5676 5677 5677 pipdate = callPackage ../development/python-modules/pipdate { }; 5678 5678 5679 - pip-tools = callPackage ../development/python-modules/pip-tools { 5680 - git = pkgs.gitMinimal; 5681 - inherit (pkgs) glibcLocales; 5682 - }; 5679 + pip-tools = callPackage ../development/python-modules/pip-tools { }; 5683 5680 5684 5681 pipx = callPackage ../development/python-modules/pipx { }; 5685 5682 ··· 9775 9772 watchgod = callPackage ../development/python-modules/watchgod { }; 9776 9773 9777 9774 waterfurnace = callPackage ../development/python-modules/waterfurnace { }; 9775 + 9776 + watermark = callPackage ../development/python-modules/watermark { }; 9778 9777 9779 9778 wavedrom = callPackage ../development/python-modules/wavedrom { }; 9780 9779
+1 -1
pkgs/top-level/release-r.nix
··· 4 4 5 5 $ hydra-eval-jobs -I . pkgs/top-level/release-r.nix 6 6 */ 7 - { supportedSystems ? [ "x86_64-linux" "x86_64-darwin" "aarch64-linux" ] }: 7 + { supportedSystems ? [ "x86_64-linux" "aarch64-linux" ] }: 8 8 9 9 with import ./release-lib.nix { inherit supportedSystems; }; 10 10