pyrox.dev
lol
R: update list of broken packages (and some cosmetic)
+59
-4
+2
-3
pkgs/development/r-modules/README.md
+2
-3
pkgs/development/r-modules/README.md
···
12
12
{
13
13
14
14
rEnv = super.rWrapper.override {
15
-
packages = with self.rPackages; [
15
+
packages = with self.rPackages; [
16
16
devtools
17
17
ggplot2
18
18
reshape2
···
65
65
{
66
66
67
67
rEnv = super.rWrapper.override {
68
-
packages = with self.rPackages; [
68
+
packages = with self.rPackages; [
69
69
devtools
70
70
ggplot2
71
71
reshape2
···
106
106
```
107
107
108
108
If this exits fine, the expression is ok. If not, you have to edit `default.nix`
109
-
+55
pkgs/development/r-modules/default.nix
+55
pkgs/development/r-modules/default.nix
···
694
694
"acs" # build is broken
695
695
"agRee" # depends on broken package BRugs-0.8-6
696
696
"aLFQ" # depends on broken package bio3d-2.3-1
697
+
"anamiR" # depends on broken package RMySQL-0.10.11
698
+
"AneuFinder" # depends on broken package Rhtslib-1.6.0
697
699
"animation" # build is broken
698
700
"anim_plots" # depends on broken package animation-2.4
699
701
"annmap" # depends on broken package RMySQL-0.10.9
700
702
"apaStyle" # depends on broken package gdtools-0.1.3
701
703
"apaTables" # depends on broken package OpenMx-2.7.4
704
+
"aptg" # depends on broken package brranching-0.2.0
702
705
"ArrayExpressHTS" # build is broken
703
706
"arrayQualityMetrics" # build is broken
704
707
"auRoc" # depends on broken package OpenMx-2.7.4
708
+
"bamsignals" # depends on broken package Rhtslib-1.6.0
705
709
"BatchQC" # build is broken
710
+
"bayesCL" # build is broken
706
711
"bayou" # depends on broken package animation-2.4
707
712
"bedr" # build is broken
708
713
"BETS" # build is broken
709
714
"BiGGR" # depends on broken package rsbml-2.30.0
710
715
"bio3d" # build is broken
711
716
"bioassayR" # depends on broken package ChemmineR-2.24.2
717
+
"bioCancer" # depends on broken package covr-2.2.2
712
718
"biomformat" # depends on broken package r-rhdf5-2.16.0
713
719
"biotools" # depends on broken package rpanel-1.1-3
714
720
"birte" # build is broken
···
730
736
"categoryCompare" # depends on broken package RCytoscape-1.21.1
731
737
"Causata" # depends on broken package RMySQL-0.10.9
732
738
"cdcfluview" # depends on broken package V8-1.2
739
+
"CexoR" # depends on broken package Rhtslib-1.6.0
740
+
"ChAMP" # depends on broken package goseq-1.26.0
733
741
"ChemmineDrugs" # depends on broken package ChemmineR-2.24.2
734
742
"ChemmineR" # build is broken
735
743
"chinese_misc" # build is broken
···
759
767
"ctsem" # depends on broken package OpenMx-2.7.4
760
768
"cudaBayesreg" # build is broken
761
769
"cytofkit" # depends on broken package flowCore-1.38.2
770
+
"CytoML" # depends on broken package flowCore-1.40.6
762
771
"daff" # depends on broken package V8-1.2
763
772
"dagbag" # build is broken
764
773
"dagitty" # depends on broken package V8-1.2
765
774
"dagLogo" # depends on broken package MotIV-1.28.0
766
775
"DAISIE" # depends on broken package animation-2.4
776
+
"DataEntry" # build is broken
767
777
"dataMaid" # build is broken
768
778
"dataone" # build is broken
769
779
"datapack" # build is broken
···
772
782
"DCM" # build is broken
773
783
"DDD" # depends on broken package animation-2.4
774
784
"deBInfer" # depends on broken package PBSddesolve-1.12.2
785
+
"debrowser" # depends on broken package V8-1.4
775
786
"DecisionCurve" # build is broken
787
+
"DeepBlueR" # build is broken
776
788
"deepSNV" # build is broken
777
789
"DEGraph" # depends on broken package RCytoscape-1.21.1
778
790
"DEploid" # build is broken
···
795
807
"euroMix" # build is broken
796
808
"evobiR" # depends on broken package animation-2.4
797
809
"exifr" # build is broken
810
+
"ExperimentHubData" # build is broken
798
811
"exprso" # build is broken
799
812
"fastR" # build is broken
813
+
"fCCAC" # depends on broken package Rhtslib-1.6.0
800
814
"fdq" # depends on broken package gdtools-0.1.3
801
815
"Fgmutils" # depends on broken package gdtools-0.1.3
802
816
"flan" # build is broken
817
+
"flextable" # depends on broken package gdtools-0.1.4
803
818
"flowAI" # depends on broken package r-flowCore-1.38.2
804
819
"flowBeads" # depends on broken package r-flowCore-1.38.2
805
820
"flowBin" # depends on broken package r-flowCore-1.38.2
···
816
831
"flowMeans" # depends on broken package r-flowCore-1.38.2
817
832
"flowMerge" # depends on broken package r-flowCore-1.38.2
818
833
"flowPeaks" # build is broken
834
+
"flowPloidy" # depends on broken package flowCore-1.40.6
819
835
"flowQB" # depends on broken package r-flowCore-1.38.2
820
836
"flowQ" # depends on broken package flowCore-1.38.2
821
837
"FlowSOM" # depends on broken package r-flowCore-1.38.2
···
842
858
"gazepath" # build is broken
843
859
"gdtools" # build is broken
844
860
"GENE_E" # depends on broken package r-rhdf5-2.16.0
861
+
"GenoGAM" # build is broken
862
+
"genomation" # depends on broken package Rhtslib-1.6.0
845
863
"geojson" # depends on broken package r-protolite-1.5
846
864
"geojsonio" # depends on broken package V8-1.2
847
865
"geojsonlint" # depends on broken package V8-1.2
···
849
867
"gfer" # depends on broken package V8-1.2
850
868
"ggcyto" # depends on broken package r-flowCore-1.38.2
851
869
"ggghost" # depends on broken package animation-2.4
870
+
"ggimage" # depends on broken package gridGraphics-0.1-5
852
871
"ggiraph" # depends on broken package gdtools-0.1.3
853
872
"ggiraphExtra" # depends on broken package gdtools-0.1.3
854
873
"ggseas" # build is broken
874
+
"gmapR" # build is broken
855
875
"gmatrix" # depends on broken package cudatoolkit-8.0.61
856
876
"gMCP" # build is broken
857
877
"gmDatabase" # depends on broken package RMySQL-0.10.9
858
878
"gmum_r" # build is broken
859
879
"googleformr" # build is broken
880
+
"goseq" # build is broken
860
881
"gpg" # build is broken
861
882
"gpuR" # build is broken
862
883
"gputools" # depends on broken package cudatoolkit-8.0.61
863
884
"GraphPAC" # build is broken
885
+
"greengenes13_5MgDb" # build is broken
864
886
"gridGraphics" # build is broken
865
887
"GSCA" # depends on broken package r-rhdf5-2.16.0
866
888
"GUIDE" # depends on broken package rpanel-1.1-3
···
870
892
"harrietr" # build is broken
871
893
"HDF5Array" # depends on broken package r-rhdf5-2.16.0
872
894
"healthyFlowData" # depends on broken package r-flowCore-1.38.2
895
+
"hexSticker" # depends on broken package gridGraphics-0.1-5
873
896
"HierO" # build is broken
874
897
"HilbertVisGUI" # build is broken
875
898
"HiPLARM" # build is broken
876
899
"hisse" # depends on broken package animation-2.4
900
+
"hoardeR" # depends on broken package Rhtslib-1.6.0
877
901
"homomorpheR" # depends on broken package sodium-0.4
902
+
"HTSeqGenie" # depends on broken package gmapR-1.16.0
878
903
"HTSSIP" # depends on broken package r-rhdf5-2.16.0
879
904
"idm" # depends on broken package animation-2.4
880
905
"ifaTools" # depends on broken package OpenMx-2.7.4
···
882
907
"IHWpaper" # depends on broken package r-lpsymphony-1.0.2
883
908
"IlluminaHumanMethylation450k_db" # build is broken
884
909
"immunoClust" # depends on broken package r-flowCore-1.38.2
910
+
"imputeR" # depends on broken package ridge-2.2
885
911
"intansv" # build is broken
886
912
"interactiveDisplay" # build is broken
887
913
"ionicons" # depends on broken package rsvg-1.0
···
894
920
"KoNLP" # build is broken
895
921
"largeList" # build is broken
896
922
"largeVis" # build is broken
923
+
"lavaan_shiny" # depends on broken package OpenMx-2.7.10
897
924
"lawn" # depends on broken package V8-1.2
898
925
"LCMCR" # build is broken
926
+
"LeArEst" # depends on broken package opencpu-1.6.1
899
927
"lefse" # build is broken
900
928
"lfe" # build is broken
901
929
"lgcp" # depends on broken package rpanel-1.1-3
···
918
946
"MBESS" # depends on broken package OpenMx-2.7.4
919
947
"mBvs" # build is broken
920
948
"mcaGUI" # build is broken
949
+
"mcPAFit" # build is broken
921
950
"mdsr" # depends on broken package RMySQL-0.10.9
922
951
"Mediana" # depends on broken package gdtools-0.1.3
923
952
"melviewr" # build is broken
···
928
957
"metagear" # build is broken
929
958
"MetaIntegrator" # depends on broken package RMySQL-0.10.9
930
959
"metaSEM" # depends on broken package OpenMx-2.7.4
960
+
"methylKit" # depends on broken package Rhtslib-1.6.0
931
961
"MigClim" # build is broken
932
962
"minimist" # depends on broken package V8-1.2
933
963
"miscF" # depends on broken package BRugs-0.8-6
934
964
"mixlink" # build is broken
935
965
"MLSeq" # build is broken
936
966
"mmnet" # build is broken
967
+
"MODIStsp" # build is broken
937
968
"MonetDBLite" # build is broken
938
969
"mongolite" # build is broken
939
970
"monogeneaGM" # depends on broken package animation-2.4
···
960
991
"ndjson" # build is broken
961
992
"ndtv" # depends on broken package animation-2.4
962
993
"NetRep" # depends on broken package r-RhpcBLASctl-0.15-148
994
+
"networkBMA" # build is broken
963
995
"nlts" # build is broken
996
+
"normr" # depends on broken package Rhtslib-1.6.0
964
997
"NORRRM" # build is broken
965
998
"odbc" # build is broken
966
999
"officer" # depends on broken package gdtools-0.1.3
···
970
1003
"OpenMx" # build is broken
971
1004
"optbdmaeAT" # build is broken
972
1005
"optBiomarker" # depends on broken package rpanel-1.1-3
1006
+
"optrcdmaeAT" # build is broken
973
1007
"ora" # depends on broken package ROracle-1.3-1
974
1008
"OUwie" # depends on broken package animation-2.4
975
1009
"PAA" # build is broken
976
1010
"paleotree" # depends on broken package animation-2.4
1011
+
"PathoStat" # depends on broken package BatchQC-1.2.1
977
1012
"PathSelectMP" # build is broken
978
1013
"PatternClass" # build is broken
979
1014
"PBD" # depends on broken package animation-2.4
···
990
1025
"PGA" # build is broken
991
1026
"PGPC" # depends on broken package ChemmineR-2.24.2
992
1027
"ph2bye" # depends on broken package animation-2.4
1028
+
"PharmacoGx" # build is broken
993
1029
"PhyInformR" # depends on broken package animation-2.4
994
1030
"phylocurve" # depends on broken package animation-2.4
995
1031
"phyloseq" # depends on broken package r-rhdf5-2.16.0
···
999
1035
"PING" # depends on broken package PICS-2.16.0
1000
1036
"plateCore" # depends on broken package r-flowCore-1.38.2
1001
1037
"plfMA" # build is broken
1038
+
"plink" # build is broken
1002
1039
"podkat" # build is broken
1003
1040
"PottsUtils" # depends on broken package BRugs-0.8-6
1004
1041
"powell" # build is broken
···
1036
1073
"raptr" # depends on broken package PBSmapping-2.69.76
1037
1074
"RbioRXN" # depends on broken package ChemmineR-2.24.2
1038
1075
"Rblpapi" # build is broken
1076
+
"RCAS" # depends on broken package Rhtslib-1.6.0
1039
1077
"Rchemcpp" # depends on broken package ChemmineR-2.24.2
1040
1078
"rchess" # depends on broken package V8-1.2
1079
+
"RchivalTag" # depends on broken package PBSmapping-2.69.76
1041
1080
"RchyOptimyx" # depends on broken package r-flowCore-1.38.2
1042
1081
"RcmdrPlugin_FuzzyClust" # build is broken
1043
1082
"RcmdrPlugin_PcaRobust" # build is broken
···
1050
1089
"rcqp" # build is broken
1051
1090
"rcrypt" # build is broken
1052
1091
"RCytoscape" # build is broken
1092
+
"rdataretriever" # build is broken
1053
1093
"rDEA" # build is broken
1054
1094
"RDieHarder" # build is broken
1055
1095
"REBayes" # depends on broken package Rmosek-1.2.5.1
···
1065
1105
"Rgnuplot" # build is broken
1066
1106
"rgp" # build is broken
1067
1107
"rgpui" # depends on broken package rgp-0.4-1
1108
+
"rgsepd" # depends on broken package goseq-1.26.0
1068
1109
"rhdf5" # build is broken
1069
1110
"RhpcBLASctl" # build is broken
1111
+
"Rhtslib" # build is broken
1070
1112
"ridge" # build is broken
1071
1113
"rjade" # depends on broken package V8-1.2
1072
1114
"rJPSGCS" # build is broken
···
1079
1121
"rmapshaper" # depends on broken package V8-1.2
1080
1122
"rMAT" # build is broken
1081
1123
"Rmosek" # build is broken
1124
+
"rmumps" # build is broken
1082
1125
"RMySQL" # build is broken
1126
+
"rnaturalearth" # depends on broken package sf-0.4-1
1083
1127
"RnavGraph" # build is broken
1084
1128
"rnetcarto" # build is broken
1129
+
"ROI_plugin_clp" # depends on broken package clpAPI-1.2.7
1085
1130
"ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3
1086
1131
"ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26
1087
1132
"ROracle" # build is broken
···
1092
1137
"Rphylopars" # depends on broken package animation-2.4
1093
1138
"Rpoppler" # build is broken
1094
1139
"RQuantLib" # build is broken
1140
+
"Rsampletrees" # build is broken
1095
1141
"RSAP" # build is broken
1096
1142
"rsbml" # build is broken
1097
1143
"RSCABS" # build is broken
···
1110
1156
"s2" # build is broken
1111
1157
"sapFinder" # build is broken
1112
1158
"sbrl" # build is broken
1159
+
"SC3" # depends on broken package scater-1.2.0
1113
1160
"scater" # depends on broken package r-rhdf5-2.16.0
1114
1161
"scran" # depends on broken package r-rhdf5-2.16.0
1115
1162
"SDD" # depends on broken package rpanel-1.1-3
···
1117
1164
"seasonalview" # build is broken
1118
1165
"Sejong" # build is broken
1119
1166
"SemiCompRisks" # build is broken
1167
+
"semPlot" # depends on broken package OpenMx-2.7.10
1120
1168
"semtree" # depends on broken package OpenMx-2.7.4
1121
1169
"seqbias" # build is broken
1122
1170
"SeqGrapheR" # build is broken
···
1129
1177
"SimInf" # build is broken
1130
1178
"simsalapar" # build is broken
1131
1179
"smapr" # depends on broken package r-rhdf5-2.16.0
1180
+
"SMITE" # depends on broken package goseq-1.26.0
1132
1181
"SnakeCharmR" # build is broken
1133
1182
"sodium" # build is broken
1134
1183
"soilphysics" # depends on broken package rpanel-1.1-3
···
1146
1195
"subspaceMOA" # depends on broken package animation-2.4
1147
1196
"svglite" # depends on broken package gdtools-0.1.3
1148
1197
"sybilSBML" # build is broken
1198
+
"SymTS" # build is broken
1149
1199
"synthACS" # depends on broken package acs-2.0
1150
1200
"tcpl" # depends on broken package RMySQL-0.10.9
1151
1201
"TDA" # build is broken
1152
1202
"TED" # depends on broken package animation-2.4
1153
1203
"tesseract" # build is broken
1204
+
"texPreview" # depends on broken package magick-0.4
1154
1205
"textreadr" # build is broken
1155
1206
"textTinyR" # build is broken
1156
1207
"TFBSTools" # depends on broken package CNEr-1.8.3
1208
+
"tilegramsR" # depends on broken package sf-0.4-1
1157
1209
"TKF" # depends on broken package animation-2.4
1158
1210
"tmap" # depends on broken package V8-1.2
1159
1211
"tmaptools" # depends on broken package V8-1.2
1160
1212
"tofsims" # build is broken
1161
1213
"toxboot" # depends on broken package RMySQL-0.10.9
1162
1214
"TransView" # build is broken
1215
+
"treatSens" # build is broken
1163
1216
"treeplyr" # depends on broken package animation-2.4
1164
1217
"TSMySQL" # depends on broken package RMySQL-0.10.9
1165
1218
"uaparserjs" # depends on broken package V8-1.2
···
1168
1221
"umx" # depends on broken package OpenMx-2.7.4
1169
1222
"userfriendlyscience" # depends on broken package OpenMx-2.7.4
1170
1223
"V8" # build is broken
1224
+
"VariantTools" # depends on broken package gmapR-1.16.0
1171
1225
"VBmix" # build is broken
1172
1226
"vcfR" # build is broken
1173
1227
"vdiffr" # depends on broken package gdtools-0.1.3
1174
1228
"vmsbase" # depends on broken package PBSmapping-2.69.76
1175
1229
"wallace" # depends on broken package V8-1.2
1176
1230
"wand" # build is broken
1231
+
"WebGestaltR" # depends on broken package PythonInR-0.1-3
1177
1232
"webp" # build is broken
1178
1233
"wordbankr" # depends on broken package RMySQL-0.10.9
1179
1234
"x13binary" # build is broken