pyrox.dev
Merge pull request #236565 from natsukium/aragorn/update
aragorn: 1.2.38 -> 1.2.41
+34
-10
pkgs/applications/science/biology/aragorn/default.nix
+34
-10
pkgs/applications/science/biology/aragorn/default.nix
···
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-
{ lib, stdenv, fetchurl }:
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stdenv.mkDerivation rec {
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version = "1.2.38";
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pname = "aragorn";
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src = fetchurl {
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url = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/${pname}${version}.tgz";
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sha256 = "09i1rg716smlbnixfm7q1ml2mfpaa2fpn3hwjg625ysmfwwy712b";
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};
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buildPhase = ''
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$CC -O3 -ffast-math -finline-functions -o aragorn aragorn${version}.c
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'';
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installPhase = ''
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mkdir -p $out/bin && cp aragorn $out/bin
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mkdir -p $out/man/1 && cp aragorn.1 $out/man/1
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'';
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meta = with lib; {
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description = "Detects tRNA, mtRNA, and tmRNA genes in nucleotide sequences";
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homepage = "http://mbio-serv2.mbioekol.lu.se/ARAGORN/";
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license = licenses.gpl2;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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}
···
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{ lib
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, stdenv
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, fetchurl
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, installShellFiles
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}:
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let
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man = fetchurl {
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url = "https://web.archive.org/web/20230608093053if_/http://www.ansikte.se/ARAGORN/Downloads/aragorn.1";
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hash = "sha256-bjD22dpkQZcGR0TwMxdpaed4VZZO2NUOoAw4o66iyS4=";
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};
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in
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stdenv.mkDerivation (finalAttrs: {
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version = "1.2.41";
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pname = "aragorn";
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src = fetchurl {
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url = "http://www.ansikte.se/ARAGORN/Downloads/aragorn${finalAttrs.version}.c";
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hash = "sha256-kqMcxcCwrRbU17AZkZibd18H0oFd8TX+bj6riPXpf0o=";
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};
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dontUnpack = true;
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+
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nativeBuildInputs = [
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installShellFiles
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];
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+
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buildPhase = ''
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runHook preBuild
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+
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$CC -O3 -ffast-math -finline-functions -o aragorn $src
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+
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runHook postBuild
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'';
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installPhase = ''
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runHook preInstall
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+
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mkdir -p $out/bin && cp aragorn $out/bin
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installManPage ${man}
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+
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runHook postInstall
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'';
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meta = with lib; {
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description = "Detects tRNA, mtRNA, and tmRNA genes in nucleotide sequences";
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+
homepage = "http://www.ansikte.se/ARAGORN/";
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+
license = licenses.gpl3Plus;
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maintainers = [ maintainers.bzizou ];
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platforms = platforms.unix;
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};
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+
})