pyrox.dev
Merge pull request #248595 from tjni/macs2
macs2: 2.2.8 -> 2.2.9.1
authored by OTABI Tomoya and committed by GitHub 7ff55787 91bdaeb6
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pkgs/applications/science/biology/macs2/default.nix
+20
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pkgs/applications/science/biology/macs2/default.nix
···
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{ lib, python3, fetchPypi }:
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python3.pkgs.buildPythonPackage rec {
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pname = "macs2";
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version = "2.2.8";
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format = "pyproject";
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src = fetchPypi {
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pname = lib.toUpper pname;
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inherit version;
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hash = "sha256-KgpDasidj4yUoeQQaQA3dg5eN5Ka1xnFRpbnTvhKmOA=";
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};
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postPatch = ''
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# prevent setup.py from installing numpy
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substituteInPlace setup.py \
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--replace "subprocess.call([sys.executable, \"-m\", 'pip', 'install', f'numpy{numpy_requires}'],cwd=cwd)" "0"
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'';
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nativeBuildInputs = with python3.pkgs; [
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cython
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setuptools
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];
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propagatedBuildInputs = with python3.pkgs; [ numpy ];
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nativeCheckInputs = [
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python3.pkgs.unittestCheckHook
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];
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unittestFlagsArray = [
···
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{ lib, python3, fetchpatch, fetchPypi }:
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python3.pkgs.buildPythonPackage rec {
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pname = "macs2";
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version = "2.2.9.1";
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format = "pyproject";
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src = fetchPypi {
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pname = lib.toUpper pname;
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inherit version;
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hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
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};
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patches = [
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# https://github.com/macs3-project/MACS/pull/590
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(fetchpatch {
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name = "remove-pip-build-dependency.patch";
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url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
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hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
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})
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];
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nativeBuildInputs = with python3.pkgs; [
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cython
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numpy
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setuptools
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wheel
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];
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propagatedBuildInputs = with python3.pkgs; [
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numpy
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];
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__darwinAllowLocalNetworking = true;
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nativeCheckInputs = with python3.pkgs; [
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unittestCheckHook
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];
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unittestFlagsArray = [