pyrox.dev
fiji: init at 20201104-1356
+77
pkgs/applications/graphics/fiji/default.nix
+77
pkgs/applications/graphics/fiji/default.nix
···
···
1
+
{ stdenv
2
+
, lib
3
+
, fetchurl
4
+
, makeWrapper
5
+
, autoPatchelfHook
6
+
, jdk11
7
+
, makeDesktopItem
8
+
, copyDesktopItems
9
+
, runtimeShell
10
+
}:
11
+
stdenv.mkDerivation rec {
12
+
pname = "fiji";
13
+
version = "20201104-1356";
14
+
15
+
src = fetchurl {
16
+
url = "https://downloads.imagej.net/${pname}/archive/${version}/${pname}-nojre.tar.gz";
17
+
sha256 = "1jv4wjjkpid5spr2nk5xlvq3hg687qx1n5zh8zlw48y1y09c4q7a";
18
+
};
19
+
20
+
dontBuild = true;
21
+
22
+
nativeBuildInputs = [ autoPatchelfHook makeWrapper copyDesktopItems ];
23
+
buildInputs = [ stdenv.cc.cc.lib ];
24
+
25
+
desktopItems = [
26
+
(makeDesktopItem {
27
+
name = "fiji";
28
+
exec = "fiji %F";
29
+
icon = "fiji";
30
+
mimeType = "image/*;";
31
+
comment = "Scientific Image Analysis";
32
+
desktopName = "Fiji Is Just ImageJ";
33
+
genericName = "Fiji Is Just ImageJ";
34
+
categories = "Education;Science;ImageProcessing;";
35
+
terminal = false;
36
+
startupNotify = true;
37
+
extraEntries = ''
38
+
Version=1.0
39
+
TryExec=fiji
40
+
X-GNOME-FullName=Fiji Is Just ImageJ
41
+
StartupWMClass=fiji-Main
42
+
'';
43
+
})
44
+
];
45
+
46
+
installPhase = ''
47
+
runHook preInstall
48
+
49
+
mkdir -p $out/{bin,fiji,share/pixmaps}
50
+
51
+
cp -R * $out/fiji
52
+
rm -f $out/fiji/jars/imagej-updater-*.jar
53
+
54
+
# Disgusting hack to stop a local desktop entry being created
55
+
cat <<EOF > $out/bin/.fiji-launcher-hack
56
+
#!${runtimeShell}
57
+
exec \$($out/fiji/ImageJ-linux64 --dry-run "\$@")
58
+
EOF
59
+
chmod +x $out/bin/.fiji-launcher-hack
60
+
61
+
makeWrapper $out/bin/.fiji-launcher-hack $out/bin/fiji \
62
+
--prefix PATH : ${lib.makeBinPath [ jdk11 ]} \
63
+
--set JAVA_HOME ${jdk11.home}
64
+
65
+
ln $out/fiji/images/icon.png $out/share/pixmaps/fiji.png
66
+
67
+
runHook postInstall
68
+
'';
69
+
70
+
meta = with lib; {
71
+
homepage = "https://imagej.net/software/fiji/";
72
+
description = "batteries-included distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis";
73
+
platforms = [ "x86_64-linux" ];
74
+
license = with lib.licenses; [ gpl2Plus gpl3Plus bsd2 publicDomain ];
75
+
maintainers = with maintainers; [ zane ];
76
+
};
77
+
}
+2
pkgs/top-level/all-packages.nix
+2
pkgs/top-level/all-packages.nix