pyrox.dev
lol
pymol: fix build
+24
-2
pkgs/by-name/py/pymol/package.nix
+24
-2
pkgs/by-name/py/pymol/package.nix
···
2
2
stdenv,
3
3
lib,
4
4
fetchFromGitHub,
5
+
fetchpatch,
5
6
makeDesktopItem,
6
7
cmake,
7
8
python3Packages,
···
57
58
58
59
# A script is already created by the `[project.scripts]` directive
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# in `pyproject.toml`.
60
-
patches = [ ./script-already-exists.patch ];
61
+
patches = [
62
+
./script-already-exists.patch
63
+
64
+
# Fix python3.13 and numpy 2 compatibility
65
+
(fetchpatch {
66
+
url="https://github.com/schrodinger/pymol-open-source/commit/fef4a026425d195185e84d46ab88b2bbd6d96cf8.patch";
67
+
hash = "sha256-F/5UcYwgHgcMQ+zeigedc1rr3WkN9rhxAxH+gQfWKIY=";
68
+
})
69
+
(fetchpatch {
70
+
url="https://github.com/schrodinger/pymol-open-source/commit/97cc1797695ee0850621762491e93dc611b04165.patch";
71
+
hash = "sha256-H2PsRFn7brYTtLff/iMvJbZ+RZr7GYElMSINa4RDYdA=";
72
+
})
73
+
# Fixes failing test testLoadPWG
74
+
(fetchpatch {
75
+
url="https://github.com/schrodinger/pymol-open-source/commit/17c6cbd96d52e9692fd298daec6c9bda273a8aad.patch";
76
+
hash = "sha256-dcYRzUhiaGlR3CjQ0BktA5L+8lFyVdw0+hIz3Li7gDQ=";
77
+
})
78
+
];
61
79
62
80
postPatch = ''
63
81
substituteInPlace setup.py \
64
82
--replace-fail "self.install_libbase" '"${placeholder "out"}/${python3Packages.python.sitePackages}"'
83
+
84
+
substituteInPlace pyproject.toml \
85
+
--replace-fail '"cmake>=3.13.3",' ""
65
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'';
66
87
67
88
env.PREFIX_PATH = lib.optionalString (!stdenv.hostPlatform.isDarwin) "${msgpack}";
···
74
95
];
75
96
76
97
buildInputs = [
77
-
python3Packages.numpy_1
98
+
python3Packages.numpy
78
99
python3Packages.pyqt5
79
100
qt5.qtbase
80
101
glew
···
115
136
python3Packages.msgpack
116
137
pillow
117
138
pytestCheckHook
139
+
requests
118
140
];
119
141
120
142
# some tests hang for some reason