Merge pull request #116530 from adisbladis/poetry2nix-1_16_1

poetry2nix: 1.16.0 -> 1.16.1

pkgs/development/tools/poetry2nix/poetry2nix/default.nix

···
 }:
 let
   # Poetry2nix version
-  version = "1.16.0";
+  version = "1.16.1";
 
   inherit (poetryLib) isCompatible readTOML moduleName;
 

pkgs/development/tools/poetry2nix/poetry2nix/overrides.nix

···
     }
   );
 
+  fiona = super.fiona.overridePythonAttrs (
+    old: {
+      buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.gdal_2 ];
+      nativeBuildInputs = [
+        pkgs.gdal_2 # for gdal-config
+      ];
+    }
+  );
+
   gdal = super.gdal.overridePythonAttrs (
     old: {
       preBuild = (old.preBuild or "") + ''
···
     }
   );
 
+  grpcio = super.grpcio.overridePythonAttrs (old: {
+    nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ self.cython pkgs.pkg-config ];
+    buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.c-ares pkgs.openssl pkgs.zlib ];
+
+    outputs = [ "out" "dev" ];
+
+    GRPC_BUILD_WITH_BORING_SSL_ASM = "";
+    GRPC_PYTHON_BUILD_SYSTEM_OPENSSL = 1;
+    GRPC_PYTHON_BUILD_SYSTEM_ZLIB = 1;
+    GRPC_PYTHON_BUILD_SYSTEM_CARES = 1;
+    DISABLE_LIBC_COMPATIBILITY = 1;
+  });
+
+  grpcio-tools = super.grpcio-tools.overridePythonAttrs (old: {
+    outputs = [ "out" "dev" ];
+  });
+
   h3 = super.h3.overridePythonAttrs (
     old: {
       preBuild = (old.preBuild or "") + ''
···
 
   h5py = super.h5py.overridePythonAttrs (
     old:
-    if old.format != "wheel" then rec {
-      nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ pkgs.pkg-config ];
-      buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.hdf5 self.pkgconfig self.cython ];
-      configure_flags = "--hdf5=${pkgs.hdf5}";
-      postConfigure = ''
-        ${self.python.executable} setup.py configure ${configure_flags}
-      '';
-    } else old
+    if old.format != "wheel" then
+      (
+        let
+          mpi = pkgs.hdf5.mpi;
+          mpiSupport = pkgs.hdf5.mpiSupport;
+        in
+        {
+          nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ pkgs.pkg-config ];
+          buildInputs =
+            (old.buildInputs or [ ])
+            ++ [ pkgs.hdf5 self.pkgconfig self.cython ]
+            ++ lib.optional mpiSupport mpi
+          ;
+          propagatedBuildInputs =
+            old.propagatedBuildInputs
+            ++ lib.optionals mpiSupport [ self.mpi4py self.openssh ]
+          ;
+          preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else "";
+          HDF5_DIR = "${pkgs.hdf5}";
+          HDF5_MPI = if mpiSupport then "ON" else "OFF";
+          # avoid strict pinning of numpy
+          postPatch = ''
+            substituteInPlace setup.py \
+              --replace "numpy ==" "numpy >="
+          '';
+          pythonImportsCheck = [ "h5py" ];
+        }
+      ) else old
   );
 
   horovod = super.horovod.overridePythonAttrs (
···
     }
   );
 
+  munch = super.munch.overridePythonAttrs (
+    old: {
+      buildInputs = (old.buildInputs or [ ]) ++ [ self.pbr ];
+    }
+  );
+
   mysqlclient = super.mysqlclient.overridePythonAttrs (
     old: {
       buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.libmysqlclient ];
···
     }
   );
 
+  pygeos = super.pygeos.overridePythonAttrs (
+    old: {
+      buildInputs = (old.buildInputs or [ ]) ++ [ pkgs.geos ];
+      nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ pkgs.geos ];
+    }
+  );
+
   pygobject = super.pygobject.overridePythonAttrs (
     old: {
       nativeBuildInputs = (old.nativeBuildInputs or [ ]) ++ [ pkgs.pkg-config ];
···
 
   rmfuse = super.rmfuse.overridePythonAttrs (old: {
     propagatedBuildInputs = (old.propagatedBuildInputs or [ ]) ++ [ self.setuptools ];
+  });
+
+  rtree = super.rtree.overridePythonAttrs (old: {
+    propagatedNativeBuildInputs = (old.propagatedNativeBuildInputs or [ ]) ++ [ pkgs.libspatialindex ];
+    postPatch = ''
+      substituteInPlace rtree/finder.py --replace \
+        "find_library('spatialindex_c')" \
+        "'${pkgs.libspatialindex}/lib/libspatialindex_c${pkgs.stdenv.hostPlatform.extensions.sharedLibrary}'"
+    '';
   });
 
   scipy = super.scipy.overridePythonAttrs (