pyrox.dev
Merge pull request #236902 from bcdarwin/update-heudiconv
python310Packages.heudiconv: 0.12.2 -> 0.13.1
authored by
Mario Rodas
and committed by
GitHub
66a607d7
078daf8d
+22
-17
pkgs/development/python-modules/heudiconv/default.nix
+22
-17
pkgs/development/python-modules/heudiconv/default.nix
···
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{ lib
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, buildPythonPackage
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, fetchPypi
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, isPy27
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, pytest
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, mock
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, pythonOlder
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, pytestCheckHook
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, datalad
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, git
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, dcm2niix
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, nibabel
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, pydicom
···
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}:
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buildPythonPackage rec {
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version = "0.12.2";
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version = "0.13.1";
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pname = "heudiconv";
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format = "pyproject";
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disabled = isPy27;
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disabled = pythonOlder "3.7";
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src = fetchPypi {
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inherit pname version;
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#sha256 = "0gzqqa4pzhywdbvks2qjniwhr89sgipl5k7h9hcjs7cagmy9gb05";
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sha256 = "sha256-cYr74mw7tXRJRr8rXlu1UMZuU3YXXfDzhuc+vaa+7PQ=";
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sha256 = "sha256-UUBRC6RToj4XVbJnxG+EKdue4NVpTAW31RNm9ieF1lU=";
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};
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postPatch = ''
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# doesn't exist as a separate package with Python 3:
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substituteInPlace heudiconv/info.py --replace "'pathlib'," ""
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'';
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propagatedBuildInputs = [
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dcm2niix nibabel pydicom nipype dcmstack etelemetry filelock
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nibabel
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pydicom
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nipype
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dcmstack
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etelemetry
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filelock
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];
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nativeCheckInputs = [ dcm2niix pytest mock ];
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nativeCheckInputs = [
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datalad
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dcm2niix
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pytestCheckHook
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git
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];
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# test_monitor and test_dlad require 'inotify' and 'datalad' respectively,
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# and these aren't in Nixpkgs
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checkPhase = "pytest -k 'not test_dlad and not test_monitor' heudiconv/tests";
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preCheck = ''export HOME=$(mktemp -d)'';
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meta = with lib; {
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homepage = "https://heudiconv.readthedocs.io";
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description = "Flexible DICOM converter for organizing imaging data";
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changelog = "https://github.com/nipy/heudiconv/releases/tag/v${version}";
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license = licenses.asl20;
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maintainers = with maintainers; [ bcdarwin ];
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};