Merge pull request #252993 from veprbl/pr/bokeh_3_2_2

python3.pkgs.bokeh: 2.4.3 -> 3.2.2

pkgs/development/python-modules/bokeh/default.nix

···
-{ buildPythonPackage
+{ lib
+, stdenv
+, buildPythonPackage
 , fetchPypi
-, futures ? null
-, isPy27
-, isPyPy
+, fetchFromGitHub
+, pythonOlder
+, substituteAll
+, colorama
+, contourpy
 , jinja2
-, lib
 , mock
 , numpy
 , nodejs
 , packaging
+, pandas
 , pillow
-#, pytestCheckHook#
-, pytest
-, python-dateutil
+, tornado
+, pytestCheckHook
 , pyyaml
-, selenium
-, six
-, substituteAll
-, tornado
-, typing-extensions
-, pytz
-, flaky
-, networkx
+, setuptools
+, setuptools-git-versioning
+, xyzservices
 , beautifulsoup4
-, requests
+, channels
+, click
+, colorcet
+, coverage
+, firefox
+, geckodriver
+, isort
+, json5
 , nbconvert
-, icalendar
-, pandas
-, pythonImportsCheckHook
+, networkx
+, psutil
+, pygments
+, pygraphviz
+, pytest
+, pytest-asyncio
+, pytest-xdist
+, pytest-timeout
+, requests
+, scipy
+, selenium
+, toml
+, typing-extensions
 }:
 
 buildPythonPackage rec {
   pname = "bokeh";
   # update together with panel which is not straightforward
-  version = "2.4.3";
+  version = "3.2.2";
+  format = "pyproject";
+
+  disabled = pythonOlder "3.9";
 
   src = fetchPypi {
     inherit pname version;
-    hash = "sha256-7zOAEWGvN5Zlq3o0aE8iCYYeOu/VyAOiH7u5nZSHSwM=";
+    hash = "sha256-spWbhSTWnsTniGvDZAdEXwqS4fGVMNO/xARSNqG3pv8=";
+  };
+
+  src_test = fetchFromGitHub {
+    owner = "bokeh";
+    repo = pname;
+    rev = "refs/tags/${version}";
+    hash = "sha256-PK9iLOCcivr4oF9Riq73dzxGfxzWRk3bdrCCpRrTv5g=";
   };
 
   patches = [
···
     })
   ];
 
-  disabled = isPyPy || isPy27;
-
   nativeBuildInputs = [
-    pythonImportsCheckHook
-  ];
-
-  pythonImportsCheck = [
-    "bokeh"
+    colorama
+    nodejs
+    setuptools
+    setuptools-git-versioning
   ];
 
   nativeCheckInputs = [
-    mock
+    pytestCheckHook
+    beautifulsoup4
+    channels
+    click
+    colorcet
+    coverage
+    firefox
+    geckodriver
+    isort
+    json5
+    nbconvert
+    networkx
+    psutil
+    pygments
+    pygraphviz
     pytest
-    pillow
+    pytest-asyncio
+    pytest-xdist
+    pytest-timeout
+    requests
+    scipy
     selenium
-    pytz
-    flaky
-    networkx
-    beautifulsoup4
-    requests
-    nbconvert
-    icalendar
-    pandas
+    toml
+    typing-extensions
   ];
 
   propagatedBuildInputs = [
-    pillow
     jinja2
-    python-dateutil
-    six
+    contourpy
+    numpy
+    packaging
+    pandas
+    pillow
     pyyaml
     tornado
-    numpy
-    packaging
-    typing-extensions
-  ]
-  ++ lib.optionals ( isPy27 ) [
-    futures
+    xyzservices
   ];
 
-  # This test suite is a complete pain. Somehow it can't find its fixtures.
-  doCheck = false;
+  doCheck = false; # need more work
+  pytestFlagsArray = "tests/test_defaults.py";
+  pythonImportsCheck = [ "bokeh" ];
+  preCheck = ''
+    cp -rv ''${src_test}/tests/* ./tests/
+  '';
 
   meta = {
     description = "Statistical and novel interactive HTML plots for Python";

pkgs/development/python-modules/bokeh/hardcode-nodejs-npmjs-paths.patch

···
-diff --git a/bokeh/util/compiler.py b/bokeh/util/compiler.py
-index a752aad7d..8af05ff63 100644
---- a/bokeh/util/compiler.py
-+++ b/bokeh/util/compiler.py
-@@ -442,8 +442,8 @@ def _detect_nodejs():
-     raise RuntimeError('node.js v%s or higher is needed to allow compilation of custom models ' % version +
+diff -ru a/src/bokeh/util/compiler.py b/src/bokeh/util/compiler.py
+--- a/src/bokeh/util/compiler.py
++++ b/src/bokeh/util/compiler.py
+@@ -411,8 +411,8 @@
+     raise RuntimeError(f'node.js v{version_repr} or higher is needed to allow compilation of custom models ' +
                         '("conda install nodejs" or follow https://nodejs.org/en/download/)')
  
 -_nodejs = None
···
 +_nodejs = "@node_bin@"
 +_npmjs = "@npm_bin@"
  
- def _nodejs_path():
+ def _nodejs_path() -> str:
      global _nodejs

pkgs/development/python-modules/intake/default.nix

···
 
 buildPythonPackage rec {
   pname = "intake";
-  version = "0.7.0";
+  version = "unstable-2023-08-24";
   format = "setuptools";
 
   disabled = pythonOlder "3.7";
···
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
-    rev = "refs/tags/${version}";
-    hash = "sha256-2LUblA8eVCOfVJ6BJayralNiv6EFt6MzR5ptKksVNA4=";
+    rev = "81b1567a2030adfb22b856b4f63cefe35de68983";
+    hash = "sha256-S2PoUN0Bao5VULfHhgbXXowopPLm/njAHO3dIM8ILno=";
   };
 
   propagatedBuildInputs = [
···
       --replace "'pytest-runner'" ""
   '';
 
+  __darwinAllowLocalNetworking = true;
+
   preCheck = ''
     export HOME=$(mktemp -d);
     export PATH="$PATH:$out/bin";
···
     "test_ndarray"
     "test_python"
     # Timing-based, flaky on darwin and possibly others
-    "TestServerV1Source.test_idle_timer"
+    "test_idle_timer"
     # arrow-cpp-13 related
     "test_read"
     "test_pickle"

pkgs/development/python-modules/livelossplot/default.nix

···
 
 buildPythonPackage rec {
   pname = "livelossplot";
-  version = "0.5.4";
+  version = "0.5.5";
 
   disabled = pythonOlder "3.6";
 
-  # version number in source is wrong in this release
-  postPatch = ''substituteInPlace ${pname}/version.py --replace "0.5.3" "0.5.4"'';
-
   src = fetchFromGitHub {
     owner  = "stared";
     repo   = pname;
     rev    = "v${version}";
-    sha256 = "IV6YAidoqVoKvpy+LNNHTPpobiDoGX59bHqJcBtaydk=";
+    sha256 = "sha256-YU8vX4SubI6txmC/i5fOjcvWfuDFm8+SPmie8Eb1qRs=";
   };
 
   propagatedBuildInputs = [ bokeh ipython matplotlib numpy ];

pkgs/development/python-modules/panel/default.nix

···
 
 buildPythonPackage rec {
   pname = "panel";
-  version = "0.14.4";
+  version = "1.2.2";
 
   format = "wheel";
 
···
   # tries to fetch even more artifacts
   src = fetchPypi {
     inherit pname version format;
-    hash = "sha256-3U/PL8cnbNPw3xEM56YZesQEDXTE79yMCSsjdxwfUU0=";
+    hash = "sha256-RMRjxcUp6MTs001wdNfC/e6diOcgtqrSaVIOSQfPgTs=";
   };
 
   nativeBuildInputs = [