pyrox.dev
Merge pull request #151265 from SomeoneSerge/napari
Napari
authored by Guillaume Girol and committed by GitHub 4838bb1f fdc37848
+7
maintainers/maintainer-list.nix
+7
maintainers/maintainer-list.nix
···
11058
githubId = 26806;
11059
name = "Scott Olson";
11060
};
11061
+
SomeoneSerge = {
11062
+
email = "sergei.kozlukov@aalto.fi";
11063
+
matrix = "@ss:someonex.net";
11064
+
github = "SomeoneSerge";
11065
+
githubId = 9720532;
11066
+
name = "Sergei K";
11067
+
};
11068
sondr3 = {
11069
email = "nilsen.sondre@gmail.com";
11070
github = "sondr3";
+30
pkgs/development/python-modules/cachey/default.nix
+30
pkgs/development/python-modules/cachey/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, typing-extensions
5
+
, heapdict
6
+
, pytestCheckHook
7
+
, pythonOlder
8
+
}: buildPythonPackage rec {
9
+
pname = "cachey";
10
+
version = "0.2.1";
11
+
format = "setuptools";
12
+
disabled = pythonOlder "3.6";
13
+
src = fetchFromGitHub {
14
+
owner = "dask";
15
+
repo = pname;
16
+
rev = version;
17
+
sha256 = "sha256-5USmuufrrWtmgibpfkjo9NtgN30hdl8plJfythmxM4s=";
18
+
};
19
+
propagatedBuildInputs = [ typing-extensions heapdict ];
20
+
checkInputs = [ pytestCheckHook ];
21
+
pythonImportsCheck = [
22
+
"cachey"
23
+
];
24
+
meta = with lib; {
25
+
description = "Caching based on computation time and storage space";
26
+
homepage = "https://github.com/dask/cachey/";
27
+
license = licenses.bsd3;
28
+
maintainers = with maintainers; [ SomeoneSerge ];
29
+
};
30
+
}
+27
pkgs/development/python-modules/docstring-parser/default.nix
+27
pkgs/development/python-modules/docstring-parser/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools
5
+
, setuptools-scm
6
+
, wheel
7
+
, pytest
8
+
}: buildPythonPackage rec {
9
+
pname = "docstring-parser";
10
+
version = "0.12";
11
+
src = fetchFromGitHub {
12
+
owner = "rr-";
13
+
repo = "docstring_parser";
14
+
rev = "${version}";
15
+
sha256 = "sha256-hQuPJQrGvDs4dJrMLSR4sSnqy45xrF2ufinBG+azuCg=";
16
+
};
17
+
nativeBuildInputs = [ setuptools-scm ];
18
+
propagatedBuildInputs = [ pytest setuptools wheel ];
19
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
20
+
21
+
meta = with lib; {
22
+
description = "Parse Python docstrings in various flavors. ";
23
+
homepage = "https://github.com/rr-/docstring_parser";
24
+
license = licenses.mit;
25
+
maintainers = with maintainers; [ SomeoneSerge ];
26
+
};
27
+
}
+33
pkgs/development/python-modules/magicgui/default.nix
+33
pkgs/development/python-modules/magicgui/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools-scm
5
+
, pytestCheckHook
6
+
, pytest-mypy-plugins
7
+
, typing-extensions
8
+
, qtpy
9
+
, pyside2
10
+
, psygnal
11
+
, docstring-parser
12
+
}: buildPythonPackage rec {
13
+
pname = "magicgui";
14
+
version = "0.3.0";
15
+
src = fetchFromGitHub {
16
+
owner = "napari";
17
+
repo = "magicgui";
18
+
rev = "v${version}";
19
+
sha256 = "sha256-DvL1szk2RoCrpisjp0BVNL6qFZtYc2oYDenX59Cxbug=";
20
+
};
21
+
nativeBuildInputs = [ setuptools-scm ];
22
+
propagatedBuildInputs = [ typing-extensions qtpy pyside2 psygnal docstring-parser ];
23
+
checkInputs = [ pytestCheckHook pytest-mypy-plugins ];
24
+
doCheck = false; # Reports "Fatal Python error"
25
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
26
+
27
+
meta = with lib; {
28
+
description = "Build GUIs from python functions, using magic. (napari/magicgui)";
29
+
homepage = "https://github.com/napari/magicgui";
30
+
license = licenses.mit;
31
+
maintainers = with maintainers; [ SomeoneSerge ];
32
+
};
33
+
}
+33
pkgs/development/python-modules/napari-console/default.nix
+33
pkgs/development/python-modules/napari-console/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools-scm
5
+
, pytestCheckHook
6
+
, pytest
7
+
, ipython
8
+
, ipykernel
9
+
, qtconsole
10
+
, napari-plugin-engine
11
+
, imageio
12
+
}: buildPythonPackage rec {
13
+
pname = "napari-console";
14
+
version = "0.0.4";
15
+
src = fetchFromGitHub {
16
+
owner = "napari";
17
+
repo = pname;
18
+
rev = "v${version}";
19
+
sha256 = "sha256-aVdYOzkZ+dqB680oDjNCg6quXU+QgUZI09E/MSTagyA=";
20
+
};
21
+
nativeBuildInputs = [ setuptools-scm ];
22
+
# setup.py somehow requires pytest
23
+
propagatedBuildInputs = [ pytest ipython ipykernel napari-plugin-engine imageio qtconsole ];
24
+
chechInputs = [ pytestCheckHook ];
25
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
26
+
27
+
meta = with lib; {
28
+
description = "A plugin that adds a console to napari";
29
+
homepage = "https://github.com/napari/napari-console";
30
+
license = licenses.bsd3;
31
+
maintainers = with maintainers; [ SomeoneSerge ];
32
+
};
33
+
}
+26
pkgs/development/python-modules/napari-plugin-engine/default.nix
+26
pkgs/development/python-modules/napari-plugin-engine/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools-scm
5
+
, pytestCheckHook
6
+
}: buildPythonPackage rec {
7
+
pname = "napari-plugin-engine";
8
+
version = "0.2.0";
9
+
src = fetchFromGitHub {
10
+
owner = "napari";
11
+
repo = pname;
12
+
rev = "v${version}";
13
+
sha256 = "sha256-cKpCAEYYRq3UPje7REjzhEe1J9mmrtXs8TBnxWukcNE=";
14
+
};
15
+
nativeBuildInputs = [ setuptools-scm ];
16
+
checkInputs = [ pytestCheckHook ];
17
+
doCheck = false;
18
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
19
+
20
+
meta = with lib; {
21
+
description = "A fork of pluggy for napari - plugin management package";
22
+
homepage = "https://github.com/napari/napari-plugin-engine";
23
+
license = licenses.mit;
24
+
maintainers = with maintainers; [ SomeoneSerge ];
25
+
};
26
+
}
+30
pkgs/development/python-modules/napari-svg/default.nix
+30
pkgs/development/python-modules/napari-svg/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools-scm
5
+
, pytestCheckHook
6
+
, vispy
7
+
, napari-plugin-engine
8
+
, imageio
9
+
}: buildPythonPackage rec {
10
+
pname = "napari-svg";
11
+
version = "0.1.5";
12
+
src = fetchFromGitHub {
13
+
owner = "napari";
14
+
repo = pname;
15
+
rev = "v${version}";
16
+
sha256 = "sha256-20NLi6JTugP+hxqF2AnhSkuvhkGGbeG+tT3M2SZbtRc=";
17
+
};
18
+
nativeBuildInputs = [ setuptools-scm ];
19
+
propagatedBuildInputs = [ vispy napari-plugin-engine imageio ];
20
+
checkInputs = [ pytestCheckHook ];
21
+
doCheck = false; # Circular dependency: napari
22
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
23
+
24
+
meta = with lib; {
25
+
description = "A plugin for writing svg files from napari";
26
+
homepage = "https://github.com/napari/napari-svg";
27
+
license = licenses.bsd3;
28
+
maintainers = with maintainers; [ SomeoneSerge ];
29
+
};
30
+
}
+75
pkgs/development/python-modules/napari/default.nix
+75
pkgs/development/python-modules/napari/default.nix
···
···
1
+
{ lib
2
+
, mkDerivationWith
3
+
, buildPythonPackage
4
+
, fetchFromGitHub
5
+
, setuptools-scm
6
+
, superqt
7
+
, typing-extensions
8
+
, tifffile
9
+
, napari-plugin-engine
10
+
, pint
11
+
, pyyaml
12
+
, numpydoc
13
+
, dask
14
+
, magicgui
15
+
, docstring-parser
16
+
, appdirs
17
+
, imageio
18
+
, pyopengl
19
+
, cachey
20
+
, napari-svg
21
+
, psutil
22
+
, napari-console
23
+
, wrapt
24
+
, pydantic
25
+
, tqdm
26
+
, jsonschema
27
+
, scipy
28
+
, wrapQtAppsHook
29
+
}: mkDerivationWith buildPythonPackage rec {
30
+
pname = "napari";
31
+
version = "0.4.12";
32
+
src = fetchFromGitHub {
33
+
owner = "napari";
34
+
repo = pname;
35
+
rev = "v${version}";
36
+
sha256 = "sha256-0QSI0mgDjF70/X58fE7uWwlBUCGY5gsvbCm4oJkp2Yk=";
37
+
};
38
+
nativeBuildInputs = [ setuptools-scm wrapQtAppsHook ];
39
+
propagatedBuildInputs = [
40
+
napari-plugin-engine
41
+
cachey
42
+
napari-svg
43
+
napari-console
44
+
superqt
45
+
magicgui
46
+
typing-extensions
47
+
tifffile
48
+
pint
49
+
pyyaml
50
+
numpydoc
51
+
dask
52
+
docstring-parser
53
+
appdirs
54
+
imageio
55
+
pyopengl
56
+
psutil
57
+
wrapt
58
+
pydantic
59
+
tqdm
60
+
jsonschema
61
+
scipy
62
+
];
63
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
64
+
dontUseSetuptoolsCheck = true;
65
+
postFixup = ''
66
+
wrapQtApp $out/bin/napari
67
+
'';
68
+
69
+
meta = with lib; {
70
+
description = "A fast, interactive, multi-dimensional image viewer for python";
71
+
homepage = "https://github.com/napari/napari";
72
+
license = licenses.bsd3;
73
+
maintainers = with maintainers; [ SomeoneSerge ];
74
+
};
75
+
}
+35
pkgs/development/python-modules/psygnal/default.nix
+35
pkgs/development/python-modules/psygnal/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, wheel
5
+
, setuptools
6
+
, setuptools-scm
7
+
, pytestCheckHook
8
+
, pytest-mypy-plugins
9
+
, pytest-cov
10
+
, pytest
11
+
, mypy
12
+
, typing-extensions
13
+
}: buildPythonPackage rec
14
+
{
15
+
pname = "psygnal";
16
+
version = "0.2.0";
17
+
src = fetchFromGitHub {
18
+
owner = "tlambert03";
19
+
repo = pname;
20
+
rev = "v${version}";
21
+
sha256 = "sha256-SiG2ywNEw3aNrRXyEMFTnvHKtKowO8yqoCaNI8PT4/Y=";
22
+
};
23
+
buildInputs = [ setuptools-scm ];
24
+
propagatedBuildInputs = [ typing-extensions ];
25
+
checkInputs = [ pytestCheckHook pytest-cov pytest-mypy-plugins ];
26
+
doCheck = false; # mypy checks are failing
27
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
28
+
29
+
meta = with lib; {
30
+
description = "Pure python implementation of Qt Signals";
31
+
homepage = "https://github.com/tlambert03/psygnal";
32
+
license = licenses.bsd3;
33
+
maintainers = with maintainers; [ SomeoneSerge ];
34
+
};
35
+
}
+29
pkgs/development/python-modules/pytest-mypy-plugins/default.nix
+29
pkgs/development/python-modules/pytest-mypy-plugins/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, chevron
5
+
, pyyaml
6
+
, mypy
7
+
, pytest
8
+
, decorator
9
+
, regex
10
+
}:
11
+
12
+
buildPythonPackage rec {
13
+
pname = "pytest-mypy-plugins";
14
+
version = "1.9.2";
15
+
src = fetchFromGitHub {
16
+
owner = "typeddjango";
17
+
repo = pname;
18
+
rev = version;
19
+
sha256 = "sha256-Me5P4Q2M+gGEWlUVgQ0L048rVUOlUzVMgZZcqZPeE4Q=";
20
+
};
21
+
propagatedBuildInputs = [ chevron pyyaml mypy pytest decorator regex ];
22
+
23
+
meta = with lib; {
24
+
description = "pytest plugin for testing mypy types, stubs, and plugins";
25
+
homepage = "https://github.com/TypedDjango/pytest-mypy-plugins";
26
+
license = licenses.mit;
27
+
maintainers = with maintainers; [ SomeoneSerge ];
28
+
};
29
+
}
+31
pkgs/development/python-modules/superqt/default.nix
+31
pkgs/development/python-modules/superqt/default.nix
···
···
1
+
{ lib
2
+
, buildPythonPackage
3
+
, fetchFromGitHub
4
+
, setuptools-scm
5
+
, pyqt5
6
+
, typing-extensions
7
+
, pytest
8
+
, pytestCheckHook
9
+
}: buildPythonPackage rec {
10
+
pname = "superqt";
11
+
version = "0.2.5-1";
12
+
src = fetchFromGitHub {
13
+
owner = "napari";
14
+
repo = pname;
15
+
rev = "v${version}";
16
+
sha256 = "sha256-rkTiCJ8mIogS9SDmLPiaAyhhuBx3kk6rXjCc19zbwiM=";
17
+
};
18
+
format = "pyproject";
19
+
nativeBuildInputs = [ setuptools-scm ];
20
+
propagatedBuildInputs = [ pyqt5 typing-extensions ];
21
+
checkInputs = [ pytestCheckHook pytest ];
22
+
doCheck = false; # Segfaults...
23
+
SETUPTOOLS_SCM_PRETEND_VERSION = version;
24
+
25
+
meta = with lib; {
26
+
description = "Missing widgets and components for Qt-python (napari/superqt)";
27
+
homepage = "https://github.com/napari/superqt";
28
+
license = licenses.bsd3;
29
+
maintainers = with maintainers; [ SomeoneSerge ];
30
+
};
31
+
}
+2
pkgs/top-level/all-packages.nix
+2
pkgs/top-level/all-packages.nix
+22
pkgs/top-level/python-packages.nix
+22
pkgs/top-level/python-packages.nix
···
1396
1397
cachetools = callPackage ../development/python-modules/cachetools { };
1398
1399
cachy = callPackage ../development/python-modules/cachy { };
1400
1401
cadquery = callPackage ../development/python-modules/cadquery {
···
2350
docloud = callPackage ../development/python-modules/docloud { };
2351
2352
docstring-to-markdown = callPackage ../development/python-modules/docstring-to-markdown { };
2353
2354
docopt = callPackage ../development/python-modules/docopt { };
2355
···
4731
4732
magic = callPackage ../development/python-modules/magic { };
4733
4734
magic-wormhole = callPackage ../development/python-modules/magic-wormhole { };
4735
4736
magic-wormhole-mailbox-server = callPackage ../development/python-modules/magic-wormhole-mailbox-server { };
···
5204
5205
nanotime = callPackage ../development/python-modules/nanotime { };
5206
5207
nassl = callPackage ../development/python-modules/nassl { };
5208
5209
nats-python = callPackage ../development/python-modules/nats-python { };
···
6289
6290
psycopg2cffi = callPackage ../development/python-modules/psycopg2cffi { };
6291
6292
ptable = callPackage ../development/python-modules/ptable { };
6293
6294
ptest = callPackage ../development/python-modules/ptest { };
···
7638
pytest-mpl = callPackage ../development/python-modules/pytest-mpl { };
7639
7640
pytest-mypy = callPackage ../development/python-modules/pytest-mypy { };
7641
7642
pytest-openfiles = callPackage ../development/python-modules/pytest-openfiles { };
7643
···
9368
supervise_api = callPackage ../development/python-modules/supervise_api { };
9369
9370
supervisor = callPackage ../development/python-modules/supervisor { };
9371
9372
sure = callPackage ../development/python-modules/sure { };
9373
···
1396
1397
cachetools = callPackage ../development/python-modules/cachetools { };
1398
1399
+
cachey = callPackage ../development/python-modules/cachey { };
1400
+
1401
cachy = callPackage ../development/python-modules/cachy { };
1402
1403
cadquery = callPackage ../development/python-modules/cadquery {
···
2352
docloud = callPackage ../development/python-modules/docloud { };
2353
2354
docstring-to-markdown = callPackage ../development/python-modules/docstring-to-markdown { };
2355
+
2356
+
docstring-parser = callPackage ../development/python-modules/docstring-parser { };
2357
2358
docopt = callPackage ../development/python-modules/docopt { };
2359
···
4735
4736
magic = callPackage ../development/python-modules/magic { };
4737
4738
+
magicgui = callPackage ../development/python-modules/magicgui { };
4739
+
4740
magic-wormhole = callPackage ../development/python-modules/magic-wormhole { };
4741
4742
magic-wormhole-mailbox-server = callPackage ../development/python-modules/magic-wormhole-mailbox-server { };
···
5210
5211
nanotime = callPackage ../development/python-modules/nanotime { };
5212
5213
+
napari = callPackage ../development/python-modules/napari {
5214
+
inherit (pkgs.libsForQt5) mkDerivationWith wrapQtAppsHook;
5215
+
};
5216
+
5217
+
napari-console = callPackage ../development/python-modules/napari-console { };
5218
+
5219
+
napari-plugin-engine = callPackage ../development/python-modules/napari-plugin-engine { };
5220
+
5221
+
napari-svg = callPackage ../development/python-modules/napari-svg { };
5222
+
5223
nassl = callPackage ../development/python-modules/nassl { };
5224
5225
nats-python = callPackage ../development/python-modules/nats-python { };
···
6305
6306
psycopg2cffi = callPackage ../development/python-modules/psycopg2cffi { };
6307
6308
+
psygnal = callPackage ../development/python-modules/psygnal { };
6309
+
6310
ptable = callPackage ../development/python-modules/ptable { };
6311
6312
ptest = callPackage ../development/python-modules/ptest { };
···
7656
pytest-mpl = callPackage ../development/python-modules/pytest-mpl { };
7657
7658
pytest-mypy = callPackage ../development/python-modules/pytest-mypy { };
7659
+
7660
+
pytest-mypy-plugins = callPackage ../development/python-modules/pytest-mypy-plugins { };
7661
7662
pytest-openfiles = callPackage ../development/python-modules/pytest-openfiles { };
7663
···
9388
supervise_api = callPackage ../development/python-modules/supervise_api { };
9389
9390
supervisor = callPackage ../development/python-modules/supervisor { };
9391
+
9392
+
superqt = callPackage ../development/python-modules/superqt { };
9393
9394
sure = callPackage ../development/python-modules/sure { };
9395