pyrox.dev
Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes
freebayes: add -fcommon workaround
authored by Bobby Rong and committed by GitHub 3b468e68 2ad9dfd5
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pkgs/applications/science/biology/freebayes/default.nix
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pkgs/applications/science/biology/freebayes/default.nix
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buildInputs = [ zlib bzip2 xz ];
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# Workaround build failure on -fno-common toolchains like upstream
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# gcc-10. Otherwise build fails as:
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# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
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# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
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NIX_CFLAGS_COMPILE = "-fcommon";
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installPhase = ''
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install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
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'';