pyrox.dev
lol
rPackages: autoset bioconductor ver to match R ver
BioConductor releases are tied to specific R releases.
Updating the package set now automatically selects the
correct version of bioconductor to match the current version of
R.
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pkgs/development/r-modules/generate-r-packages.R
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pkgs/development/r-modules/generate-r-packages.R
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#!/usr/bin/env Rscript
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library(data.table)
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library(parallel)
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library(BiocManager)
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cl <- makeCluster(10)
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biocVersion <- 3.12
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biocVersion <- BiocManager:::.version_map()
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biocVersion <- biocVersion[biocVersion$R == getRversion()[, 1:2],c("Bioc", "BiocStatus")]
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if ("release" %in% biocVersion$BiocStatus) {
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biocVersion <- as.numeric(as.character(biocVersion[biocVersion$BiocStatus == "release", "Bioc"]))
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} else {
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biocVersion <- max(as.numeric(as.character(biocVersion$Bioc)))
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}
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snapshotDate <- Sys.Date()-1
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mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")