pyrox.dev
lol
python311Packages.scikit-survival: 0.21.0 -> 0.22.1; fix build
disable test_coxnet on darwin aarch64 due to 2e-05 floating point mismatch
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pkgs/development/python-modules/scikit-survival/default.nix
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pkgs/development/python-modules/scikit-survival/default.nix
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buildPythonPackage rec {
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pname = "scikit-survival";
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version = "0.21.0";
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format = "setuptools";
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version = "0.22.1";
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pyproject = true;
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-rcdEtlmD3O2BQuwxRlOJ/HOEBdWJBRJR5UR6rZoeArw=";
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hash = "sha256-Ft0Hg5iF9Sb9VSOsFMgfAvc4Nsam216kzt5Xv2iykv8=";
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};
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nativeBuildInputs = [
···
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nativeCheckInputs = [ pytestCheckHook ];
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# treat numpy versions as lower bounds, same as setuptools build
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postPatch = ''
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sed -i 's/numpy==/numpy>=/' pyproject.toml
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'';
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# Hack needed to make pytest + cython work
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# https://github.com/NixOS/nixpkgs/pull/82410#issuecomment-827186298
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preCheck = ''
···
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"test_pandas_inputs"
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"test_survival_svm"
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"test_tree"
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];
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] ++ lib.optional (stdenv.isDarwin && stdenv.isAarch64)
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# floating point mismatch on aarch64
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# 27079905.88052468 to far from 27079905.880496684
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"test_coxnet"
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;
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meta = with lib; {
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broken = (stdenv.isLinux && stdenv.isAarch64);
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description = "Survival analysis built on top of scikit-learn";
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homepage = "https://github.com/sebp/scikit-survival";
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license = licenses.gpl3Only;