pyrox.dev
lol
mirtk: 2.0.0 -> unstable-2022-07-22
+39
-13
+39
-13
pkgs/development/libraries/science/biology/mirtk/default.nix
+39
-13
pkgs/development/libraries/science/biology/mirtk/default.nix
···
1
-
{ lib, stdenv, gtest, fetchFromGitHub, cmake, boost, eigen, python3, vtk_8, zlib, tbb }:
1
+
{ lib
2
+
, stdenv
3
+
, fetchFromGitHub
4
+
, cmake
5
+
, python3
6
+
, boost
7
+
, eigen
8
+
, libGLU
9
+
, fltk
10
+
, itk
11
+
, vtk
12
+
, zlib
13
+
, tbb
14
+
}:
2
15
3
16
stdenv.mkDerivation rec {
4
-
version = "2.0.0";
5
17
pname = "mirtk";
18
+
version = "unstable-2022-07-22";
6
19
7
20
src = fetchFromGitHub {
8
21
owner = "BioMedIA";
9
22
repo = "MIRTK";
10
-
rev = "v${version}";
11
-
sha256 = "0i2v97m66ir5myvi5b123r7zcagwy551b73s984gk7lksl5yiqxk";
23
+
rev = "973ce2fe3f9508dec68892dbf97cca39067aa3d6";
24
+
hash = "sha256-vKgkDrbyGOcbaYlxys1duC8ZNG0Y2nqh3TtSQ06Ox0Q=";
12
25
fetchSubmodules = true;
13
26
};
14
27
···
16
29
"-DWITH_VTK=ON"
17
30
"-DBUILD_ALL_MODULES=ON"
18
31
"-DWITH_TBB=ON"
32
+
"-DWITH_ITK=ON"
33
+
"-DWITH_GIFTICLIB=ON"
34
+
"-DWITH_NIFTILIB=ON"
19
35
];
20
36
21
-
doCheck = true;
22
-
23
-
checkPhase = ''
24
-
ctest -E '(Polynomial|ConvolutionFunction|Downsampling|EdgeTable|InterpolateExtrapolateImage)'
37
+
# tries to download data during configuration
38
+
postPatch = ''
39
+
substituteInPlace Packages/DrawEM/CMakeLists.txt --replace "include(Atlases.cmake)" ""
25
40
'';
26
-
# testPolynomial - segfaults for some reason
27
-
# testConvolutionFunction, testDownsampling - main not called correctly
28
-
# testEdgeTable, testInterpolateExtrapolateImageFunction - setup fails
41
+
42
+
# tests don't seem to be maintained and gtest fails to link with BUILD_TESTING=ON;
43
+
# unclear if specific to Nixpkgs
44
+
doCheck = false;
29
45
30
46
postInstall = ''
31
47
install -Dm644 -t "$out/share/bash-completion/completions/mirtk" share/completion/bash/mirtk
32
48
'';
33
49
34
-
nativeBuildInputs = [ cmake gtest ];
35
-
buildInputs = [ boost eigen python3 vtk_8 zlib tbb ];
50
+
nativeBuildInputs = [ cmake ];
51
+
buildInputs = [
52
+
boost
53
+
eigen
54
+
fltk
55
+
itk
56
+
libGLU.dev
57
+
python3
58
+
tbb
59
+
vtk
60
+
zlib
61
+
];
36
62
37
63
meta = with lib; {
38
64
homepage = "https://github.com/BioMedIA/MIRTK";