pyrox.dev
Merge pull request #305638 from Kupac/fix_rsbml
rPackages.rsbml: fix build
authored by Justin Bedő and committed by GitHub 0d3377a6 78c337ec
+58
pkgs/by-name/li/libsbml/package.nix
+58
pkgs/by-name/li/libsbml/package.nix
···
···
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{
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lib,
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stdenv,
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fetchFromGitHub,
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fetchpatch,
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cmake,
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pkg-config,
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bzip2,
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libxml2,
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swig,
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}:
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stdenv.mkDerivation (attrs: {
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pname = "libsbml";
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version = "5.20.2";
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src = fetchFromGitHub {
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owner = "sbmlteam";
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repo = "libsbml";
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rev = "v${attrs.version}";
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hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";
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};
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patches = [
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# This should be in next release, remember to remove fetchpatch
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(fetchpatch {
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name = "fix-xmlerror-conversion.patch";
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url = "https://github.com/sbmlteam/libsbml/pull/358.patch";
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hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";
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})
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];
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nativeBuildInputs = [
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cmake
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pkg-config
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swig
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];
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buildInputs = [
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bzip2.dev
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libxml2
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];
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# libSBML doesn't always make use of pkg-config
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cmakeFlags = [
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"-DLIBXML_INCLUDE_DIR=${lib.getDev libxml2}/include/libxml2"
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"-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"
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"-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"
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"-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"
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];
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meta = with lib; {
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description = "Library for manipulating Systems Biology Markup Language (SBML)";
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homepage = "https://github.com/sbmlteam/libsbml";
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license = licenses.lgpl21Only;
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maintainers = [maintainers.kupac];
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platforms = platforms.all;
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};
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})
+2
pkgs/development/r-modules/default.nix
+2
pkgs/development/r-modules/default.nix
···
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LOMAR = [ pkgs.gmp.dev ];
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lpsymphony = with pkgs; [ pkg-config gfortran gettext ];
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lwgeom = with pkgs; [ proj geos gdal ];
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rvg = [ pkgs.libpng.dev ];
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MAGEE = [ pkgs.zlib.dev pkgs.bzip2.dev ];
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magick = [ pkgs.imagemagick.dev ];
···
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gdtools = [ pkgs.pkg-config ];
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archive = [ pkgs.libarchive];
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gdalcubes = with pkgs; [ proj.dev gdal sqlite.dev netcdf ];
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SuperGauss = [ pkgs.pkg-config pkgs.fftw.dev];
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specklestar = [ pkgs.fftw.dev ];
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cartogramR = [ pkgs.fftw.dev ];
···
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LOMAR = [ pkgs.gmp.dev ];
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lpsymphony = with pkgs; [ pkg-config gfortran gettext ];
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lwgeom = with pkgs; [ proj geos gdal ];
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rsbml = [ pkgs.pkg-config ];
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rvg = [ pkgs.libpng.dev ];
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MAGEE = [ pkgs.zlib.dev pkgs.bzip2.dev ];
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magick = [ pkgs.imagemagick.dev ];
···
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gdtools = [ pkgs.pkg-config ];
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archive = [ pkgs.libarchive];
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gdalcubes = with pkgs; [ proj.dev gdal sqlite.dev netcdf ];
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rsbml = [ pkgs.libsbml ];
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SuperGauss = [ pkgs.pkg-config pkgs.fftw.dev];
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specklestar = [ pkgs.fftw.dev ];
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cartogramR = [ pkgs.fftw.dev ];