Merge pull request #246497 from natsukium/meeko/update

python310Packages.meeko: 0.4.0 -> 0.5.0

pkgs/development/python-modules/meeko/default.nix

···
 { lib
 , buildPythonPackage
 , fetchFromGitHub
+, fetchpatch
 , numpy
 , pytestCheckHook
 , pythonOlder
···
 
 buildPythonPackage rec {
   pname = "meeko";
-  version = "0.4.0";
+  version = "0.5.0";
   format = "setuptools";
 
   disabled = pythonOlder "3.5";
···
     owner = "forlilab";
     repo = "Meeko";
     rev = "refs/tags/v${version}";
-    hash = "sha256-BCkKRwz3jK5rNAMtKcGxuvfdIFxRRJpABcedyd1zSKE=";
+    hash = "sha256-pngFu6M63W26P7wd6FUNLuf0NikxtRtVR/pnR5PR6Wo=";
   };
 
-  postPatch = ''
-    substituteInPlace setup.py \
-      --replace "python_requires='>=3.5.*'" "python_requires='>=3.5'"
-  '';
+  patches = [
+    # https://github.com/forlilab/Meeko/issues/60
+    (fetchpatch {
+      name = "fix-unknown-sidechains.patch";
+      url = "https://github.com/forlilab/Meeko/commit/28c9fbfe3b778aa1bd5e8d7e4f3e6edf44633a0c.patch";
+      hash = "sha256-EJbLnbKTTOsTxKtLiU7Af07yjfY63ungGUHbGvrm0AU=";
+    })
+    (fetchpatch {
+      name = "add-test-data.patch";
+      url = "https://github.com/forlilab/Meeko/commit/57b52e3afffb82685cdd1ef1bf6820d55924b97a.patch";
+      hash = "sha256-nLnyIjT68iaY3lAEbH9EJ5jZflhxABBwDqw8kaRKf3k=";
+    })
+  ];
 
   propagatedBuildInputs = [
     # setup.py only requires numpy but others are needed at runtime