pyrox.dev
lol
Merge pull request #313266 from natsukium/biopandas/update
python311Packages.biopandas: 0.4.1 -> 0.5.0
authored by
Fabian Affolter
and committed by
GitHub
0a644a5d
8c11d6ea
+31
-30
+31
-30
pkgs/development/python-modules/biopandas/default.nix
+31
-30
pkgs/development/python-modules/biopandas/default.nix
···
1
-
{ lib
2
-
, buildPythonPackage
3
-
, fetchFromGitHub
4
-
, looseversion
5
-
, mmtf-python
6
-
, nose
7
-
, numpy
8
-
, pandas
9
-
, pythonRelaxDepsHook
1
+
{
2
+
lib,
3
+
buildPythonPackage,
4
+
fetchFromGitHub,
5
+
setuptools,
6
+
looseversion,
7
+
mmtf-python,
8
+
numpy,
9
+
pandas,
10
+
pynose,
11
+
pytestCheckHook,
12
+
pythonRelaxDepsHook,
10
13
}:
11
14
12
15
buildPythonPackage rec {
13
16
pname = "biopandas";
14
-
version = "0.4.1";
15
-
format = "setuptools";
17
+
version = "0.5.0";
18
+
pyproject = true;
16
19
17
20
src = fetchFromGitHub {
18
21
owner = "BioPandas";
19
22
repo = "biopandas";
20
23
rev = "refs/tags/v${version}";
21
-
hash = "sha256-PRdemBo+bB2xJWmF2NylFTfNwEEo67i6XSaeDAFmQ/c=";
24
+
hash = "sha256-1c78baBBsDyvAWrNx5mZI/Q75wyXv0DAwAdWm3EwX/I=";
22
25
};
23
26
24
-
nativeBuildInputs = [
25
-
pythonRelaxDepsHook
26
-
];
27
+
nativeBuildInputs = [ pythonRelaxDepsHook ];
28
+
29
+
pythonRelaxDeps = [ "looseversion" ];
27
30
28
-
pythonRelaxDeps = [
29
-
"looseversion"
30
-
];
31
+
build-system = [ setuptools ];
31
32
32
-
propagatedBuildInputs = [
33
+
dependencies = [
33
34
numpy
34
35
pandas
35
36
mmtf-python
···
37
38
];
38
39
39
40
nativeCheckInputs = [
40
-
nose
41
+
pynose
42
+
pytestCheckHook
41
43
];
42
44
43
-
checkPhase = ''
44
-
runHook preCheck
45
-
46
-
nosetests
45
+
disabledTests = [
46
+
# require network access
47
+
"test_mmcif_pdb_conversion"
48
+
"test_fetch_pdb"
49
+
"test_write_mmtf_bp"
50
+
"test_write_mmtf"
51
+
"test_b_factor_shift"
52
+
];
47
53
48
-
runHook postCheck
49
-
'';
50
-
51
-
pythonImportsCheck = [
52
-
"biopandas"
53
-
];
54
+
pythonImportsCheck = [ "biopandas" ];
54
55
55
56
meta = {
56
57
description = "Working with molecular structures in pandas DataFrames";