pyrox.dev
deeptools: 3.5.5 -> 3.5.6
Diff: https://github.com/deeptools/deepTools/compare/refs/tags/3.5.5...3.5.6
+16
-19
pkgs/by-name/de/deeptools/package.nix
+16
-19
pkgs/by-name/de/deeptools/package.nix
···
1
{
2
lib,
3
-
python3,
4
fetchFromGitHub,
5
}:
6
7
-
python3.pkgs.buildPythonApplication rec {
8
pname = "deeptools";
9
-
version = "3.5.5";
10
pyproject = true;
11
12
src = fetchFromGitHub {
13
owner = "deeptools";
14
repo = "deepTools";
15
tag = version;
16
-
hash = "sha256-2kSlL7Y5f/FjVtStnmz+GlTw2oymrtxOCaXlqgbQ7FU=";
17
};
18
19
-
nativeBuildInputs = with python3.pkgs; [
20
setuptools
21
];
22
23
-
propagatedBuildInputs = with python3.pkgs; [
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numpy
25
numpydoc
26
-
scipy
27
py2bit
28
-
pybigwig
29
-
pysam
30
-
matplotlib
31
plotly
32
deeptoolsintervals
33
-
importlib-metadata
34
];
35
36
-
nativeCheckInputs = with python3.pkgs; [
37
pytestCheckHook
38
];
39
40
-
preCheck = ''
41
-
export PATH="$out/bin:$PATH"
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-
'';
43
-
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disabledTestPaths = [
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# tests trip on `len(sys.argv) == 1`
46
"deeptools/test/test_bigwigAverage.py"
···
49
"deeptools/test/test_multiBamSummary.py"
50
];
51
52
-
meta = with lib; {
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homepage = "https://deeptools.readthedocs.io/en/develop";
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description = "Tools for exploring deep DNA sequencing data";
55
longDescription = ''
···
60
publication-ready visualizations to identify enrichments and for functional
61
annotations of the genome.
62
'';
63
-
license = with licenses; [
64
mit
65
bsd3
66
];
67
-
maintainers = with maintainers; [ scalavision ];
68
};
69
}
···
1
{
2
lib,
3
+
python3Packages,
4
fetchFromGitHub,
5
+
addBinToPathHook,
6
}:
7
8
+
python3Packages.buildPythonApplication rec {
9
pname = "deeptools";
10
+
version = "3.5.6";
11
pyproject = true;
12
13
src = fetchFromGitHub {
14
owner = "deeptools";
15
repo = "deepTools";
16
tag = version;
17
+
hash = "sha256-dxXlOvOjF4KSc5YO+1A5hlp95sfeyPSbmp93tihm7Vo=";
18
};
19
20
+
build-system = with python3Packages; [
21
setuptools
22
];
23
24
+
dependencies = with python3Packages; [
25
numpy
26
+
scipy
27
+
matplotlib
28
+
pysam
29
numpydoc
30
+
pybigwig
31
py2bit
32
plotly
33
deeptoolsintervals
34
];
35
36
+
nativeCheckInputs = with python3Packages; [
37
pytestCheckHook
38
+
addBinToPathHook
39
];
40
41
disabledTestPaths = [
42
# tests trip on `len(sys.argv) == 1`
43
"deeptools/test/test_bigwigAverage.py"
···
46
"deeptools/test/test_multiBamSummary.py"
47
];
48
49
+
meta = {
50
homepage = "https://deeptools.readthedocs.io/en/develop";
51
description = "Tools for exploring deep DNA sequencing data";
52
longDescription = ''
···
57
publication-ready visualizations to identify enrichments and for functional
58
annotations of the genome.
59
'';
60
+
license = with lib.licenses; [
61
mit
62
bsd3
63
];
64
+
maintainers = with lib.maintainers; [ scalavision ];
65
};
66
}