python3Packages.scikit-posthocs: init at 0.7.0

pkgs/development/python-modules/scikit-posthocs/0001-increased-abs-tolerance-for-wilcoxon-test.patch

···
+From 02266a00ce0eb6a089e7efe07816da1aa5152fc9 Mon Sep 17 00:00:00 2001
+From: Maksim Terpilovskii <[e-mail]>
+Date: Sun, 31 Jul 2022 12:25:14 +0300
+Subject: [PATCH] increased abs tolerance for wilcoxon test
+
+---
+ tests/test_posthocs.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py
+index 956d808..8cc65e4 100644
+--- a/tests/test_posthocs.py
++++ b/tests/test_posthocs.py
+@@ -471,7 +471,7 @@ class TestPosthocs(unittest.TestCase):
+                               [2.857818e-06, 1.230888e-05, 1]])
+ 
+         results = sp.posthoc_wilcoxon(self.df.sort_index(), val_col = 'pulse', group_col = 'kind')
+-        self.assertTrue(np.allclose(results, r_results))
++        self.assertTrue(np.allclose(results, r_results, atol=1e-4))
+ 
+ 
+     def test_posthoc_scheffe(self):
+-- 
+2.36.1
+

pkgs/development/python-modules/scikit-posthocs/0002-Update-test_posthocs.py.patch

···
+From 5416ffba3ab01aebab3909400b5a9e847022898e Mon Sep 17 00:00:00 2001
+From: Maksim Terpilovskii <[e-mail]>
+Date: Thu, 16 Mar 2023 00:20:02 +0300
+Subject: [PATCH] Update test_posthocs.py
+
+---
+ tests/test_posthocs.py | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/tests/test_posthocs.py b/tests/test_posthocs.py
+index 8cc65e4..42ca5f3 100644
+--- a/tests/test_posthocs.py
++++ b/tests/test_posthocs.py
+@@ -71,7 +71,7 @@ class TestPosthocs(unittest.TestCase):
+         a = splt.sign_plot(x, flat=True, labels=False)
+         with self.assertRaises(ValueError):
+             splt.sign_plot(x.astype(float), flat=True, labels=False)
+-        self.assertTrue(isinstance(a, ma._subplots.Axes))
++        self.assertTrue(isinstance(a, ma._axes.Axes))
+ 
+     def test_sign_plot_nonflat(self):
+ 
+@@ -85,7 +85,7 @@ class TestPosthocs(unittest.TestCase):
+         with self.assertRaises(ValueError):
+             splt.sign_plot(x.astype(np.int64), labels=False)
+ 
+-        self.assertTrue(isinstance(a, ma._subplots.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))
++        self.assertTrue(isinstance(a, ma._axes.Axes) and isinstance(cbar, mpl.colorbar.ColorbarBase))
+ 
+     # Outliers tests
+     def test_outliers_iqr(self):
+-- 
+2.36.1
+

pkgs/development/python-modules/scikit-posthocs/default.nix

···
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, setuptools
+, wheel
+, matplotlib
+, numpy
+, pandas
+, scipy
+, seaborn
+, statsmodels
+, pytestCheckHook
+, seaborn-data
+}:
+
+buildPythonPackage rec {
+  pname = "scikit-posthocs";
+  version = "0.7.0";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "maximtrp";
+    repo = "scikit-posthocs";
+    rev = "v${version}";
+    hash = "sha256-IkvAc684AWEK427OGAa4qVy6leWmd3b8Dnhd5bYAt5I=";
+  };
+
+  patches = [
+    # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/02266a00ce0eb6a089e7efe07816da1aa5152fc9
+    ./0001-increased-abs-tolerance-for-wilcoxon-test.patch
+    # Fixed on master: https://github.com/maximtrp/scikit-posthocs/commit/5416ffba3ab01aebab3909400b5a9e847022898e
+    ./0002-Update-test_posthocs.py.patch
+  ];
+
+  nativeBuildInputs = [
+    setuptools
+    wheel
+  ];
+
+  propagatedBuildInputs = [
+    matplotlib
+    numpy
+    pandas
+    scipy
+    seaborn
+    statsmodels
+  ];
+
+  preCheck = ''
+    # tests require to write to home directory
+    export SEABORN_DATA=${seaborn-data.exercise}
+  '';
+  nativeCheckInputs = [
+    pytestCheckHook
+  ];
+  pythonImportsCheck = [ "scikit_posthocs" ];
+
+  meta = with lib; {
+    description = "Multiple Pairwise Comparisons (Post Hoc) Tests in Python";
+    homepage = "https://github.com/maximtrp/scikit-posthocs";
+    changelog = "https://github.com/maximtrp/scikit-posthocs/releases/tag/v${version}";
+    license = licenses.mit;
+    maintainers = with maintainers; [ mbalatsko ];
+  };
+}

pkgs/top-level/python-packages.nix

···
 
   scikit-optimize = callPackage ../development/python-modules/scikit-optimize { };
 
+  scikit-posthocs = callPackage ../development/python-modules/scikit-posthocs { };
+
   scikit-rf = callPackage ../development/python-modules/scikit-rf { };
 
   scikits-odes = callPackage ../development/python-modules/scikits-odes { };