Remove genuinely stale deps (merlin, duration, digestif, eio_main,
dune-configurator, printbox, printbox-text, tls-eio, ocamlformat,
bytesrw-eio) and add missing library declarations to dune files
(eio+logs in ocaml-oci/src, logs in ocaml-git/lib+bin).

Keep js_of_ocaml in space-ground (needed for modes js) and add it
to implicit_deps in lint since it's a compiler, not a library.

Adds 108 missing dependency declarations across 52 packages.
Most common missing dep was fmt (38 packages), followed by wire,
eio, and bytesrw. Also improves lint output with tty tables and
better subtree filtering display.

Rename make_superblock → superblock, make_inode_buf → inode_buf,
make_image → image, make_key → key in squashfs and streaming-aead.

Add doc comments for fuzz suite values and squashfs extended codec
values.

Strip get_/make_/find_/create_ from 138 function definitions and all
call sites across ocaml-pds, ocaml-pid1, ocaml-precommit,
ocaml-publicsuffix, ocaml-qemu, ocaml-requests, ocaml-retry, and
ocaml-rpmsg. Use Module.v for constructors per the E331 convention.

Standardize fuzz and test conventions across 30+ packages:

- E715/E718: Add fuzz.ml runners referencing Fuzz_*.suite instead of
calling Fuzz_*.run() directly; update dune files accordingly
- E725: Fix fuzz_paseto suite name from "crowbar" to "paseto"
- E600: Create .mli interfaces for test modules (test_firmware,
test_remoteproc, test_pbkdf2, test_paseto) with single-group suites
- E605: Add missing test files (test_skills, test_monitor, test_openamp,
test_xrpc_server) with proper module extraction from inline test.ml
- E415: Add pp pretty-printer to xrpc_server type t
- E405: Add doc comment for pp_sync_action in skills.mli
- E205: Replace Printf with Fmt in fuzz_paseto and gen_corpus
- E331: Rename make_key to key in fuzz_paseto

- Tlv.decode now stops gracefully on truncated data instead of raising
- Fuzz test for multi roundtrip deduplicates keys (last-write-wins)

- Change `run` signature to `string -> (string * test_case list) list -> unit`
matching Alcotest's grouping convention
- Fix `_name` bug: pass the name through to Alcotest.run_with_args
- Each fuzz module now exports `let suite = ("name", [test_case ...])`
- Entry points (fuzz.ml) collect suites: `Crowbar.run "pkg" [Fuzz_X.suite]`
- Remove stale `add_test`/`suite` API, keep only `test_case`/`run`
- Remove `let run () = ()` from fuzz_common.ml files
- Update merlint E725 rule to match new `let suite = ("name", ...)` pattern
- Update E725 test fixtures and expected output

- Restore cursor on exit via at_exit in Tty.Progress (fixes TTY corruption)
- Install SIGINT handler in monopam test for clean Ctrl-C
- Add 2s per-iteration timeout and 2s total budget to crowbar
- Group crowbar alcotest output by module prefix ("mdns: foo" → group "mdns")
- Skip fuzz runtest in afl context (enabled_if <> profile afl)
- Add merlint E725: enforce "module: description" fuzz test name convention

Add gen_corpus.ml with domain-appropriate seed data for hap, homebrew,
hostname, json-logs, jsonwt, ltp, and matter fuzz directories. Merge
matter's two fuzz executables (fuzz_tlv, fuzz_case) into a single fuzz
runner via fuzz.ml wrapper.

Add mono and ref_ fields to sources_registry entries, enabling nested
monorepos (mono=true) with recursive push/pull and replacing mono.lock
with ref pinning in sources.toml. Rename url→source and
default_url_base→origin with full backward compatibility.

Also fix pre-existing syntax errors and formatting in test files.

Add (enabled_if (= %{profile} afl)), (source_tree corpus), and
gen_corpus.exe deps to all 25 fuzz directories

Replace Printf/Format with Fmt. Use Fmt.failwith instead of failwith(Fmt.str).

Extract err_* helpers in ocaml-hap/lib/hap.ml for pair setup/verify
error patterns. Extract err_unknown_type_code in ocaml-matter/lib/tlv.ml.
Rename OnOff -> On_off and AdministratorCommissioning ->
Administrator_commissioning in ocaml-matter for Snake_case convention.

ocaml-hap, ocaml-homebrew, ocaml-hostname, ocaml-json-logs,
ocaml-jsonwt, ocaml-ltp, ocaml-matter

Migrate Printf.sprintf to Fmt.str, Format.fprintf to Fmt.pf, and
Format.pp_print_string to Fmt.string across bundle, gpt, hap, homebrew,
jsonwt, matter, mbr, meross, paseto, precommit, publicsuffix, qemu,
retry, sdnv, slack, sle, space-packet, spake2, sqlite, squashfs, tar,
tc, tcf, tcpcl, tm, tomlt, tty, uslp, vlog, wal, wire, yamlrw, yamlt,
osrelease, space, xdge, and crypto test runner.

Rename CamelCase internal modules to Snake_case per OCaml convention:
- ocaml-hap: TlvType→Tlv_type, HapError→Hap_error, CharType→Char_type
- ocaml-cookeio: SameSite→Same_site, DateParser→Date_parser
- ocaml-claudeio: PreToolUse→Pre_tool_use, PostToolUse→Post_tool_use,
UserPromptSubmit→User_prompt_submit, SubagentStop→Subagent_stop,
PreCompact→Pre_compact (wire format strings preserved)
- irmin: StringMap→String_map, PathSet→Path_set
- ocaml-block: ReadOnly→Read_only, WithCrc→With_crc

- E330: rename redundant module-prefixed functions (Calls.calls -> list_all,
Downloads.downloads -> list_all, Hash.hash -> v, Tag.tag -> name)
- E331: remove redundant get_/find_/make_ prefixes across freebox and hap
- E005: extract helpers from long functions in gpt.ml (validate_inputs,
prepare_partitions) and hap.ml (build_m5, verify_m6, srp_verify,
build_verify_m3, derive_session_keys, verify_m2)

E325 naming convention:
- freebox: find_correlated → correlated (returns list, not option)
- git: Config.get → Config.find (returns string option)
- hap: get_accessory_info → find_accessory_info, get_bool_value → find_bool_value

E330 redundant module prefix:
- freebox: auth_result → result, wifi_config → config
- git: Diff.diff_trees → trees, diff_commits → commits,
diff_tree_to_empty → tree_to_empty, diff_empty_to_tree → empty_to_tree,
Pack_index.pack_index_magic → magic, Remote.remote_head → head,
remote_matches_local → matches_local, Worktree.worktree_name → name
- hap: hap_request → request

E340 error patterns: crow/bin/main.ml err_* helpers
E300 variant naming: conpool AllPresets → All_presets, ListPresets → List_presets
E405 missing docs: freebox, hap, git, gpt .mli files

- E410: fix doc style for of_string_exn, v, inflate, bool_codec,
access_token_url and 5 repository.mli @param missing periods
- E415: add pp to Config, Index, Repository types
- E510: add Logs source to Subtree module
- E331 auto-fixes: Config rename get_all→all, get_bool→bool,
get_int→int, find_sections→sections, get_remotes→remotes,
get_remote→remote, get_branches→branches, get_user→user;
cascading updates in repository, tests, fuzz, monopam, precommit
- Auto-fixes in freebox, gpt, hap

Convert all packages from:
(source (uri https://tangled.org/handle/repo))
to:
(source (tangled handle/repo))

This uses dune 3.21's native tangled support for cleaner source
declarations. Also removes redundant homepage/bug_reports fields
that are auto-generated from tangled sources.

No centralized doc site available yet.

Comprehensive seed corpus for efficient AFL fuzzing:

Text/Protocol formats:
- cookeio: HTTP cookies (simple, full attributes, multi-value)
- jsonwt: JWT tokens (header, valid token)
- json-logs: JSON strings with escapes
- tomlt: TOML config files
- hostname: Domain names with ports
- xff: X-Forwarded-For headers, CIDR notation
- punycode: ASCII and Unicode domains
- mdns: DNS headers and queries

Binary formats:
- sdnv: RFC 6256 variable-length integers
- hap: HomeKit TLV encoding
- space-packet: CCSDS packet headers
- tc-1/tm-1: Telecommand/Telemetry frames
- sle: Space Link Extension TML headers
- tls: TLS records and handshake messages
- requests: HTTP/1.1 and HTTP/2 frames

Crypto:
- crypto: 32-byte keys
- csrf: CSRF tokens and secrets
- paseto: v3.local prefix and keys
- pbkdf2: passwords and salts
- spake2/srp: authentication parameters
- streaming-aead: keys, nonces, plaintext

Misc:
- sgp4: TLE satellite orbit data
- tty: ASCII, Unicode, ANSI escape sequences
- github-oauth: OAuth parameters
- rate-limit: IPv4/IPv6 addresses

Update comment headers to use standardized format:
- Quick check: dune build @fuzz
- With AFL: crow start --cpus=4

Remove verbose afl-fuzz commands and fuzz-afl aliases since
crow now handles building and running AFL instrumented fuzzers.