byarielm.fyi
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README.md
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README.md
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The below demonstrates the result of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package)
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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library(scImmuCC)
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library(scImmuCC)
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data(package="scImmuCC)
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data(test_data,package="scImmuCC") # load the test data
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The following is a quick tutorial on how to use scImmuCC to annotate immune cell types in scRNA-Seq.
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<div style="backgroud-color: #f5f5f5; padding: 10px">
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library(scImmuCC)
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count <- read.csv(file=filename) #read your scRNA-Seq file
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count <- as.matrix(count)
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count <- read.csv(file=filename) ##read your scRNA-Seq file
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count <- as.matrix(count)
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test <- scImmuCC_Layered(test_data,Non_Immune=FALSE)
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#if your data have non-immune cell, Nn_Immune = TRUE
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##if your data have non-immune cell, Nn_Immune = TRUE
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</div>
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The annotation results will be output in your current running directory。
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