byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
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Update scImmuCC.R

authored by Yingjiang17 and committed by GitHub cbebb619 f40debfb

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scImmuCC.R
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R/scImmuCC.R
··· 15 15 scImmuCC_Layered <- function(count,Non_Immune=TRUE){ 16 16 17 17 # if (!requireNamespace("GSVA", quietly = TRUE)) { 18 - BiocManager::install("GSVA") 18 + # BiocManager::install("GSVA") 19 19 # } 20 20 # if (!requireNamespace("Seurat", quietly = TRUE)){ 21 - install.packages("Seurat") 21 + # install.packages("Seurat") 22 22 # } 23 23 data("./data/layer1_genelist.rda",package="scImmuCC") 24 24 data("./data/Tcell_genelist.rda",package="scImmuCC")