byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
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··· 46 46 47 47 count <- as.matrix(count) 48 48 49 - test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) ##if your data have non-immune cell, Nn_Immune = TRUE 49 + test <- scImmuCC_Layered(test_data,Non_Immune=FALSE) ##if your data have non-immune cell, NOn_Immune = TRUE 50 50 51 51 </div> 52 52 The annotation results will be output in your current running directory。