byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
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authored by Yingjiang17 and committed by GitHub 517b0f62 f0450fb5

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seurat_maps.R
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R/seurat_maps.R
··· 35 35 if(cells>50){ 36 36 seurat.data <- RunPCA(seurat.data, features = VariableFeatures(object = seurat.data)) 37 37 }else{ 38 - seurat.data <- RunPCA(seurat.data,npcs = cells-1, features = VariableFeatures(object = seurat.data)) 38 + seurat.data <- RunPCA(seurat.data,npcs = (cells-1), features = VariableFeatures(object = seurat.data)) 39 39 } 40 40 41 41 head(seurat.data@reductions$pca@cell.embeddings)