byarielm.fyi
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README.md
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README.md
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Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm.
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The below demonstrates the result of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package)
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library(scImmuCC)
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data(package="scImmuCC)
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count <- as.matrix(test_data) # Convert test data to matrix
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test <- scImmuCC_Layered(count = count ,Non_Immune = FALSE)
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Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm.
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The below demonstrates the result of Hierarchical annotation for some immune cells in the E-MTAB-11536 dataset (included in the package)
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<table style="backgroud-color: F8CECC;">
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<tr>
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library(scImmuCC)
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data(package="scImmuCC)
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count <- as.matrix(test_data) # Convert test data to matrix
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test <- scImmuCC_Layered(count = count ,Non_Immune = FALSE)
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</tr>
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</table>