byarielm.fyi / scImmuCC
Hierarchical annotation of immune cells in scRNA-Seq data based on ssGSEA algorithm. Fork for large datasets with QOL improvements.
fork atom

Update seurat_maps.R

authored by Yingjiang17 and committed by GitHub 2a7ffd5b f943308c

options
unified split
Changed files
+2 -1
R
seurat_maps.R
+2 -1
R/seurat_maps.R
··· 35 35 seurat.data <- ScaleData(seurat.data, features = all.genes) 36 36 37 37 #Perform linear dimensional reductionPerform linear dimensional reduction 38 - counts <- seurat.data[["RNA"]]@counts 38 + #counts <- seurat.data[["RNA"]]@counts 39 + counts <- seurat.data[["RNA"]]$counts 39 40 cells <- length(counts[2,]) 40 41 if(cells>50){ 41 42 seurat.data <- RunPCA(seurat.data, features = VariableFeatures(object = seurat.data))