{ lib, stdenv, fetchzip, jdk21, testers, wrapGAppsHook3, igv, }: stdenv.mkDerivation (finalAttrs: { pname = "igv"; version = "2.19.7"; src = fetchzip { url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor finalAttrs.version}/IGV_${finalAttrs.version}.zip"; sha256 = "sha256-IkzaQAM+s1boEKo/3ShtbUhihrhxLQCTz8/0lzAyYJA="; }; installPhase = '' mkdir -pv $out/{share,bin} cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igv.sh sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools sed -i 's#\bjava\b#${jdk21}/bin/java#g' $out/share/igvtools ln -s $out/share/igv.sh $out/bin/igv ln -s $out/share/igvtools $out/bin/igvtools chmod +x $out/bin/igv chmod +x $out/bin/igvtools ''; nativeBuildInputs = [ wrapGAppsHook3 ]; passthru.tests.version = testers.testVersion { package = igv; }; meta = { homepage = "https://www.broadinstitute.org/igv/"; description = "Visualization tool for interactive exploration of genomic datasets"; license = lib.licenses.mit; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.mimame lib.maintainers.rollf ]; }; })