{ lib, stdenv, fetchFromGitHub, cmake, libcxx, zlib, nix-update-script, }: let version = "0.31.3"; in stdenv.mkDerivation { pname = "splitcode"; inherit version; src = fetchFromGitHub { owner = "pachterlab"; repo = "splitcode"; tag = "v${version}"; hash = "sha256-EEYjBo52jPCSnv5WSGsXhfZEjsBCHdGerVPOZfShXBU="; }; nativeBuildInputs = [ cmake ]; buildInputs = [ libcxx zlib ]; doCheck = true; checkPhase = '' mkdir func_tests cp $src/func_tests/* ./func_tests/ bash ./func_tests/runtests.sh ''; passthru.updateScript = nix-update-script { }; meta = { description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads"; homepage = "https://github.com/pachterlab/splitcode"; license = lib.licenses.bsd2; platforms = lib.platforms.all; maintainers = with lib.maintainers; [ zimward ]; mainProgram = "splitcode"; badPlatforms = [ # Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31 "aarch64-linux" ]; }; }