tjh.dev
1{ stdenv
2, buildPythonPackage
3, fetchPypi
4, cython
5, lockfile
6, cachecontrol
7, decorator
8, ipython
9, matplotlib
10, natsort
11, numpy
12, pandas
13, scipy
14, hdmedians
15, scikitlearn
16, pytest
17, coverage
18, python
19, isPy3k
20}:
21
22buildPythonPackage rec {
23 version = "0.5.5";
24 pname = "scikit-bio";
25 disabled = !isPy3k;
26
27 src = fetchPypi {
28 inherit pname version;
29 sha256 = "9fa813be66e88a994f7b7a68b8ba2216e205c525caa8585386ebdeebed6428df";
30 };
31
32 buildInputs = [ cython ];
33 checkInputs = [ coverage ];
34 propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikitlearn ];
35
36 # remove on when version > 0.5.4
37 postPatch = ''
38 sed -i "s/numpy >= 1.9.2, < 1.14.0/numpy/" setup.py
39 sed -i "s/pandas >= 0.19.2, < 0.23.0/pandas/" setup.py
40 '';
41
42 # cython package not included for tests
43 doCheck = false;
44
45 checkPhase = ''
46 ${python.interpreter} -m skbio.test
47 '';
48
49 meta = with stdenv.lib; {
50 homepage = http://scikit-bio.org/;
51 description = "Data structures, algorithms and educational resources for bioinformatics";
52 license = licenses.bsd3;
53 maintainers = [ maintainers.costrouc ];
54 };
55}